BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12319
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RHW|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RHW|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab And Ivermectin
pdb|3RI5|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RI5|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Picrotoxin
pdb|3RIA|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIA|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Iodide.
pdb|3RIF|A Chain A, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|B Chain B, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|C Chain C, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|D Chain D, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate.
pdb|3RIF|E Chain E, C. Elegans Glutamate-Gated Chloride Channel (Glucl) In
Complex With Fab, Ivermectin And Glutamate
Length = 347
Score = 30.4 bits (67), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 116 NSVSK-IDRVSRILFPASFGLLNLFYW 141
N +SK +D +SR LFP F + N+ YW
Sbjct: 309 NDISKRVDLISRALFPVLFFVFNILYW 335
>pdb|3A5C|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5C|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|D Chain D, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|E Chain E, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|F Chain F, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|L Chain L, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|M Chain M, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3A5D|N Chain N, Inter-Subunit Interaction And Quaternary Rearrangement
Defined By The Central Stalk Of Prokaryotic V1-Atpase
pdb|3J0J|D Chain D, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|E Chain E, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
pdb|3J0J|F Chain F, Fitted Atomic Models Of Thermus Thermophilus V-Atpase
Subunits Into Cryo-Em Map
Length = 478
Score = 30.0 bits (66), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHP--KSYVSEDEEDEQTNIHK 59
+ +ATI E A V K +IP L D+ R HP P Y++E + +H+
Sbjct: 287 MYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELHR 345
>pdb|3GQB|B Chain B, Crystal Structure Of The A3b3 Complex From V-atpase
pdb|3GQB|D Chain D, Crystal Structure Of The A3b3 Complex From V-atpase
Length = 464
Score = 30.0 bits (66), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 2 SFFYC-IATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHP--KSYVSEDEEDEQTNIH 58
+ Y +ATI E A V K +IP L D+ R HP P Y++E + +H
Sbjct: 285 GYMYTDLATIYERAGVVEGKKGSVTQIPILSMPDDDRTHPIPDLTGYITEGQIQLSRELH 344
Query: 59 K 59
+
Sbjct: 345 R 345
>pdb|2OFC|A Chain A, The Crystal Structure Of Sclerotium Rolfsii Lectin
pdb|2OFC|B Chain B, The Crystal Structure Of Sclerotium Rolfsii Lectin
pdb|2OFD|A Chain A, The Crystal Structure Of Sclerotium Rolfsii Lectin In
Complex With N-Acetyl-D-Galactosamine
pdb|2OFD|B Chain B, The Crystal Structure Of Sclerotium Rolfsii Lectin In
Complex With N-Acetyl-D-Galactosamine
pdb|2OFE|A Chain A, The Crystal Structure Of Sclerotium Rolfsii Lectin In
Complex With N- Acetyl-D-Glucosamine
pdb|2OFE|B Chain B, The Crystal Structure Of Sclerotium Rolfsii Lectin In
Complex With N- Acetyl-D-Glucosamine
Length = 142
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 67 CSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSRE 109
+ + + K +IV L+ DE +V N++Y ++ +E +RE
Sbjct: 65 TATFGVHNYKRWCDIVTNLAADETGMVINQQYYSQKNREEARE 107
>pdb|3K6S|B Chain B, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|D Chain D, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|F Chain F, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K6S|H Chain H, Structure Of Integrin Alphaxbeta2 Ectodomain
pdb|3K71|B Chain B, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|D Chain D, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|F Chain F, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K71|H Chain H, Structure Of Integrin Alphax Beta2 Ectodomain
pdb|3K72|B Chain B, Structure Of Integrin Alphax Beta2
pdb|3K72|D Chain D, Structure Of Integrin Alphax Beta2
Length = 687
Score = 26.9 bits (58), Expect = 4.4, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 7 IATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEED-----------EQT 55
+ +L FA F G G++ +++ ++ R H Y +E D +
Sbjct: 233 VTRLLVFATDDGFHFAGDGKLGAILTPNDGRCHLEDNLYKRSNEFDYPSVGQLAHKLAEN 292
Query: 56 NIHKI-KVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLV 93
NI I V R+ YE T + + V +LS D N+V
Sbjct: 293 NIQPIFAVTSRMVKTYEKLTEIIPKSAVGELSEDSSNVV 331
>pdb|4FL6|A Chain A, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
pdb|4FL6|B Chain B, Crystal Structure Of The Complex Of The 3-Mbt Repeat
Domain Of L3mbtl3 And Unc1215
Length = 332
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 5 YCIATILEFAA----VHYFTKTGSGEIPFLVSSDEIRVHP-----------HPKSYVSED 49
YC+ T+ E +H+ + + F V++D + +HP HP E+
Sbjct: 54 YCVLTVAEVCGYRIKLHFDGYSDCYD--FWVNADALDIHPVGWCEKTGHKLHPPKGYKEE 111
Query: 50 EEDEQTNIHKIKVDYRVCSVYEIRTLKVCPN 80
E + QT + K S++E + + V P+
Sbjct: 112 EFNWQTYLKTCKAQAAPKSLFENQNITVIPS 142
>pdb|3UT1|A Chain A, Crystal Structure Of The 3-Mbt Repeat Domain Of L3mbtl3
Length = 324
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 17/91 (18%)
Query: 5 YCIATILEFAA----VHYFTKTGSGEIPFLVSSDEIRVHP-----------HPKSYVSED 49
YC+ T+ E +H+ + + F V++D + +HP HP E+
Sbjct: 54 YCVLTVAEVCGYRIKLHFDGYSDCYD--FWVNADALDIHPVGWCEKTGHKLHPPKGYKEE 111
Query: 50 EEDEQTNIHKIKVDYRVCSVYEIRTLKVCPN 80
E + QT + K S++E + + V P+
Sbjct: 112 EFNWQTYLKTCKAQAAPKSLFENQNITVIPS 142
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,896,174
Number of Sequences: 62578
Number of extensions: 181877
Number of successful extensions: 381
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 377
Number of HSP's gapped (non-prelim): 12
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)