BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12319
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q24352|GBRAL_DROME Gamma-aminobutyric acid receptor alpha-like OS=Drosophila
melanogaster GN=Grd PE=1 SV=1
Length = 686
Score = 55.8 bits (133), Expect = 1e-07, Method: Composition-based stats.
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 98 YRKKREQEVSREGYQF-HINSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFVWKDP 156
Y ++ E E R+G + NSVSKIDR SRI+FP F L+N+FYW Y++ + P
Sbjct: 623 YYRREEMEARRKGKRTPQYNSVSKIDRASRIVFPLLFILINVFYWYGYLSRSSRILANTP 682
Score = 46.6 bits (109), Expect = 7e-05, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 43/81 (53%), Gaps = 17/81 (20%)
Query: 1 MSFFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKI 60
+SF + ATIL+FA VHY+TK GSGE F++ +E+ D E ++ +
Sbjct: 460 LSFGFIFATILQFAVVHYYTKYGSGECYFII--EEL------------DSESGESETEPL 505
Query: 61 KVDYRVCS---VYEIRTLKVC 78
D+R + +YE+ L +C
Sbjct: 506 TSDFRGSTESKIYEVIPLSMC 526
>sp|P19969|GBRA5_RAT Gamma-aminobutyric acid receptor subunit alpha-5 OS=Rattus
norvegicus GN=Gabra5 PE=2 SV=1
Length = 464
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 67/145 (46%), Gaps = 23/145 (15%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G + D + K + + E + N
Sbjct: 328 YAFVFSALIEFATVNYFTKRG-------WAWDGKKALEAAK--IKKKERELILN------ 372
Query: 63 DYRVCSVYEIRTLKVCPNIV-DQLSTDEVNLVANEKYRKKREQEV-SREGYQFHINSVSK 120
+ + + L PNI +QL N V R E+ S++ Y NS+SK
Sbjct: 373 --KSTNAFTTGKLTHPPNIPKEQLPGGTGNAVGTASIRASEEKTSESKKTY----NSISK 426
Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
ID++SRI+FP FG NL YW +Y+
Sbjct: 427 IDKMSRIVFPILFGTFNLVYWATYL 451
>sp|P19150|GBRA1_CHICK Gamma-aminobutyric acid receptor subunit alpha-1 OS=Gallus gallus
GN=GABRA1 PE=2 SV=1
Length = 455
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 60/144 (41%), Gaps = 23/144 (15%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G KS V E + + + K
Sbjct: 321 YAFVFSALIEFATVNYFTKRGYAW--------------DGKSVVPEKPKKVKDPLIKKNN 366
Query: 63 DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVAN-EKYRKKREQEVSREGYQFHINSVSKI 121
Y + PNI + A E K E + + F NSVSKI
Sbjct: 367 TYTAAAT------SYTPNIARDPGLATIAKSATIEPKEVKPETKPAEPKKTF--NSVSKI 418
Query: 122 DRVSRILFPASFGLLNLFYWISYI 145
DR+SRI FP FG+ NL YW +Y+
Sbjct: 419 DRLSRIAFPLLFGIFNLVYWATYL 442
>sp|Q08E50|GBRA5_BOVIN Gamma-aminobutyric acid receptor subunit alpha-5 OS=Bos taurus
GN=GABRA5 PE=2 SV=1
Length = 462
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 66/143 (46%), Gaps = 21/143 (14%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G + D + K + + E + N
Sbjct: 328 YAFVFSALIEFATVNYFTKRG-------WAWDGKKALEAAK--IKKKERELTIN------ 372
Query: 63 DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKID 122
+ + Y + PNI + + ++ + + + +++ Y NS+SKID
Sbjct: 373 --KSTNAYTTGKMTHPPNIPKEQTPAGTTNASSASVKPEDKASENKKTY----NSISKID 426
Query: 123 RVSRILFPASFGLLNLFYWISYI 145
++SRI+FP FG NL YW +Y+
Sbjct: 427 KMSRIIFPLLFGTFNLVYWATYL 449
>sp|P10063|GBRA2_BOVIN Gamma-aminobutyric acid receptor subunit alpha-2 OS=Bos taurus
GN=GABRA2 PE=2 SV=1
Length = 451
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G KS V++ ++++ + + +
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKASVMIQNNA 366
Query: 63 DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
+ Y K V I +T E N KK E + + F NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416
Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
IDR+SRI+FP FG NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441
>sp|Q5R6B2|GBRA1_PONAB Gamma-aminobutyric acid receptor subunit alpha-1 OS=Pongo abelii
GN=GABRA1 PE=2 SV=1
Length = 456
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G + D V P E+ ++ IK
Sbjct: 321 YAFVFSALIEFATVNYFTKRG-------YAWDGKSVVP---------EKPKKVKDPLIKK 364
Query: 63 DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGY----QFHINSV 118
+ + Y PN L+ + L K +EV E + NSV
Sbjct: 365 N----NTYAPTATSYTPN----LAGGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSV 416
Query: 119 SKIDRVSRILFPASFGLLNLFYWISYI 145
SKIDR+SRI FP FG+ NL YW +Y+
Sbjct: 417 SKIDRLSRIAFPLLFGIFNLIYWATYL 443
>sp|Q5RCC5|GBRA2_PONAB Gamma-aminobutyric acid receptor subunit alpha-2 OS=Pongo abelii
GN=GABRA2 PE=2 SV=2
Length = 451
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G KS V++ ++++ + + +
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKASVMIQNNA 366
Query: 63 DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
+ Y K V I +T E N KK E + + F NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416
Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
IDR+SRI+FP FG NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441
>sp|P23576|GBRA2_RAT Gamma-aminobutyric acid receptor subunit alpha-2 OS=Rattus
norvegicus GN=Gabra2 PE=2 SV=1
Length = 451
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G KS V++ ++++ + + +
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKGSVMIQNNA 366
Query: 63 DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
+ Y K V I +T E N KK E + + F NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416
Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
IDR+SRI+FP FG NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441
>sp|P47869|GBRA2_HUMAN Gamma-aminobutyric acid receptor subunit alpha-2 OS=Homo sapiens
GN=GABRA2 PE=2 SV=2
Length = 451
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G KS V++ ++++ + + +
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKASVMIQNNA 366
Query: 63 DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
+ Y K V I +T E N KK E + + F NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416
Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
IDR+SRI+FP FG NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441
>sp|P26048|GBRA2_MOUSE Gamma-aminobutyric acid receptor subunit alpha-2 OS=Mus musculus
GN=Gabra2 PE=1 SV=1
Length = 451
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/145 (29%), Positives = 66/145 (45%), Gaps = 26/145 (17%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G KS V++ ++++ + + +
Sbjct: 321 YAFVFSALIEFATVNYFTKRGWAW--------------DGKSVVNDKKKEKGSVMIQNNA 366
Query: 63 DYRVCSVYEIRTLK--VCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK 120
+ Y K V I +T E N KK E + + F NSVSK
Sbjct: 367 YAVAVANYAPNLSKDPVLSTISKSATTPEPN--------KKPENKPAEAKKTF--NSVSK 416
Query: 121 IDRVSRILFPASFGLLNLFYWISYI 145
IDR+SRI+FP FG NL YW +Y+
Sbjct: 417 IDRMSRIVFPVLFGTFNLVYWATYL 441
>sp|P08219|GBRA1_BOVIN Gamma-aminobutyric acid receptor subunit alpha-1 OS=Bos taurus
GN=GABRA1 PE=1 SV=1
Length = 456
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G + D V P E+ ++ IK
Sbjct: 321 YAFVFSALIEFATVNYFTKRG-------YAWDGKSVVP---------EKPKKVKDPLIKK 364
Query: 63 DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGY----QFHINSV 118
+ + Y PN L+ + L K +EV E + NSV
Sbjct: 365 N----NTYAPTATSYTPN----LARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSV 416
Query: 119 SKIDRVSRILFPASFGLLNLFYWISYI 145
SKIDR+SRI FP FG+ NL YW +Y+
Sbjct: 417 SKIDRLSRIAFPLLFGIFNLVYWATYL 443
>sp|P14867|GBRA1_HUMAN Gamma-aminobutyric acid receptor subunit alpha-1 OS=Homo sapiens
GN=GABRA1 PE=1 SV=3
Length = 456
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 28/147 (19%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G KS V E + + + K
Sbjct: 321 YAFVFSALIEFATVNYFTKRGYAW--------------DGKSVVPEKPKKVKDPLIKKN- 365
Query: 63 DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGY----QFHINSV 118
+ Y PN L+ + L K +EV E + NSV
Sbjct: 366 -----NTYAPTATSYTPN----LARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSV 416
Query: 119 SKIDRVSRILFPASFGLLNLFYWISYI 145
SKIDR+SRI FP FG+ NL YW +Y+
Sbjct: 417 SKIDRLSRIAFPLLFGIFNLVYWATYL 443
>sp|Q4R534|GBRA1_MACFA Gamma-aminobutyric acid receptor subunit alpha-1 OS=Macaca
fascicularis GN=GABRA1 PE=2 SV=1
Length = 456
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G + D V P E+ ++ IK
Sbjct: 321 YAFVFSALIEFATVNYFTKRG-------YAWDGKSVVP---------EKPKKVKDPLIKK 364
Query: 63 DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGY----QFHINSV 118
+ + Y PN L+ + L K +EV E + NSV
Sbjct: 365 N----NTYAPTATSYTPN----LARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSV 416
Query: 119 SKIDRVSRILFPASFGLLNLFYWISYI 145
SKIDR+SRI FP FG+ NL YW +Y+
Sbjct: 417 SKIDRLSRIAFPLLFGIFNLVYWATYL 443
>sp|P62813|GBRA1_RAT Gamma-aminobutyric acid receptor subunit alpha-1 OS=Rattus
norvegicus GN=Gabra1 PE=1 SV=1
Length = 455
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G + D V P E+ ++ IK
Sbjct: 320 YAFVFSALIEFATVNYFTKRG-------YAWDGKSVVP---------EKPKKVKDPLIKK 363
Query: 63 DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGY----QFHINSV 118
+ + Y PN L+ + L K +EV E + NSV
Sbjct: 364 N----NTYAPTATSYTPN----LARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSV 415
Query: 119 SKIDRVSRILFPASFGLLNLFYWISYI 145
SKIDR+SRI FP FG+ NL YW +Y+
Sbjct: 416 SKIDRLSRIAFPLLFGIFNLVYWATYL 442
>sp|P62812|GBRA1_MOUSE Gamma-aminobutyric acid receptor subunit alpha-1 OS=Mus musculus
GN=Gabra1 PE=1 SV=1
Length = 455
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/147 (29%), Positives = 64/147 (43%), Gaps = 28/147 (19%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G + D V P E+ ++ IK
Sbjct: 320 YAFVFSALIEFATVNYFTKRG-------YAWDGKSVVP---------EKPKKVKDPLIKK 363
Query: 63 DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGY----QFHINSV 118
+ + Y PN L+ + L K +EV E + NSV
Sbjct: 364 N----NTYAPTATSYTPN----LARGDPGLATIAKSATIEPKEVKPETKPPEPKKTFNSV 415
Query: 119 SKIDRVSRILFPASFGLLNLFYWISYI 145
SKIDR+SRI FP FG+ NL YW +Y+
Sbjct: 416 SKIDRLSRIAFPLLFGIFNLVYWATYL 442
>sp|P16305|GBRA6_MOUSE Gamma-aminobutyric acid receptor subunit alpha-6 OS=Mus musculus
GN=Gabra6 PE=1 SV=3
Length = 453
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 63/149 (42%), Gaps = 22/149 (14%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNI----- 57
F + + ++EFAAV+YFT S + + + + P S+ E Q I
Sbjct: 311 FAFVFSALIEFAAVNYFTNLQSQK-----AERQAQTAATPPVAKSKASESLQAEIVVHSD 365
Query: 58 HKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINS 117
K + R+ S+ TL + P+ + ++ + VS
Sbjct: 366 SKYHLKKRISSL----TLPIVPSSEASKALSRTPIL--------KSTPVSPPLLLPATGG 413
Query: 118 VSKIDRVSRILFPASFGLLNLFYWISYIT 146
SKID+ SRILFP +F NL YWI Y++
Sbjct: 414 TSKIDQYSRILFPVAFAGFNLVYWIVYLS 442
>sp|P20236|GBRA3_RAT Gamma-aminobutyric acid receptor subunit alpha-3 OS=Rattus
norvegicus GN=Gabra3 PE=1 SV=1
Length = 493
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 67/144 (46%), Gaps = 10/144 (6%)
Query: 3 FFYCIATILEFAAVHYFTK-TGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIK 61
+ + + ++EFA V+YFTK + + E + + E++ K + + T + +
Sbjct: 346 YAFVFSALIEFATVNYFTKRSWAWEGKKVPEALEMK-----KKTPAAPTKKTSTTFNIVG 400
Query: 62 VDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKI 121
Y + + + ++ ++A+ K ++ + Y NSVSK+
Sbjct: 401 TTYPINLALDTEFSTISKAAAAPSASSTPTVIASPKTTYVQDSPAETKTY----NSVSKV 456
Query: 122 DRVSRILFPASFGLLNLFYWISYI 145
D++SRI+FP F + NL YW +Y+
Sbjct: 457 DKISRIIFPVLFAIFNLVYWATYV 480
>sp|P34903|GBRA3_HUMAN Gamma-aminobutyric acid receptor subunit alpha-3 OS=Homo sapiens
GN=GABRA3 PE=2 SV=1
Length = 492
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 11/144 (7%)
Query: 3 FFYCIATILEFAAVHYFTK-TGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIK 61
+ + + ++EFA V+YFTK + + E + + E++ K + + T + +
Sbjct: 346 YAFVFSALIEFATVNYFTKRSWAWEGKKVPEALEMK-----KKTPAAPAKKTSTTFNIVG 400
Query: 62 VDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKI 121
Y + + + S+ ++A+ K ++ + Y NSVSK+
Sbjct: 401 TTYPINLAKDTEFSTISKGAAPSASSTP-TIIASPKATYVQDSPTETKTY----NSVSKV 455
Query: 122 DRVSRILFPASFGLLNLFYWISYI 145
D++SRI+FP F + NL YW +Y+
Sbjct: 456 DKISRIIFPVLFAIFNLVYWATYV 479
>sp|Q8BHJ7|GBRA5_MOUSE Gamma-aminobutyric acid receptor subunit alpha-5 OS=Mus musculus
GN=Gabra5 PE=2 SV=1
Length = 463
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 64/144 (44%), Gaps = 22/144 (15%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKV 62
+ + + ++EFA V+YFTK G + D + K + + E + N
Sbjct: 328 YAFVFSALIEFATVNYFTKRG-------WAWDGKKALEAAK--IKKKERELILN------ 372
Query: 63 DYRVCSVYEIRTLKVCPNIV-DQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKI 121
+ + + L PNI +Q N + + S++ Y NS+SKI
Sbjct: 373 --KSTNAFTTGKLTHPPNIPKEQPPAGTANAPTVSIKASEEKTAESKKTY----NSISKI 426
Query: 122 DRVSRILFPASFGLLNLFYWISYI 145
D++SRI+FP FG NL YW +Y+
Sbjct: 427 DKMSRIVFPILFGTFNLVYWATYL 450
>sp|P31644|GBRA5_HUMAN Gamma-aminobutyric acid receptor subunit alpha-5 OS=Homo sapiens
GN=GABRA5 PE=1 SV=1
Length = 462
Score = 46.6 bits (109), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 27/146 (18%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIK- 61
+ + + ++EFA V+YFTK G + E I K +
Sbjct: 328 YAFVFSALIEFATVNYFTKRGWAW--------------------DGKKALEAAKIKKKRE 367
Query: 62 -VDYRVCSVYEIRTLKVCPNIV-DQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVS 119
+ + + + + PNI +Q N + + + S++ Y NS+S
Sbjct: 368 VILNKSTNAFTTGKMSHPPNIPKEQTPAGTSNTTSVSVKPSEEKTSESKKTY----NSIS 423
Query: 120 KIDRVSRILFPASFGLLNLFYWISYI 145
KID++SRI+FP FG NL YW +Y+
Sbjct: 424 KIDKMSRIVFPVLFGTFNLVYWATYL 449
>sp|P10064|GBRA3_BOVIN Gamma-aminobutyric acid receptor subunit alpha-3 OS=Bos taurus
GN=GABRA3 PE=2 SV=1
Length = 492
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 116 NSVSKIDRVSRILFPASFGLLNLFYWISYI 145
NSVSK+D++SRI+FP F + NL YW +Y+
Sbjct: 450 NSVSKVDKISRIIFPVLFAIFNLVYWATYV 479
>sp|Q9JLF1|GBRT_MOUSE Gamma-aminobutyric acid receptor subunit theta OS=Mus musculus
GN=Gabrq PE=2 SV=1
Length = 638
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 109 EGYQFHI---NSVSKIDRVSRILFPASFGLLNLFYWISYI 145
EG+ F + N V K+DR SR LFP SFGL N+ YW+ ++
Sbjct: 598 EGFSFQLFKPNRVPKVDRWSRFLFPLSFGLFNVVYWLYHV 637
>sp|P26049|GBRA3_MOUSE Gamma-aminobutyric acid receptor subunit alpha-3 OS=Mus musculus
GN=Gabra3 PE=1 SV=1
Length = 492
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 24/30 (80%)
Query: 116 NSVSKIDRVSRILFPASFGLLNLFYWISYI 145
NSVSK+D++SRI+FP F + NL YW +Y+
Sbjct: 450 NSVSKVDKISRIIFPVLFAIFNLVYWATYV 479
>sp|P30191|GBRA6_RAT Gamma-aminobutyric acid receptor subunit alpha-6 OS=Rattus
norvegicus GN=Gabra6 PE=2 SV=1
Length = 453
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/147 (29%), Positives = 66/147 (44%), Gaps = 18/147 (12%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIH---K 59
F + + ++EFAAV+YFT S + + P KS +E E E +H K
Sbjct: 311 FAFVFSALIEFAAVNYFTNLQSQKAE--RQAQTAAKPPVAKSKTTESLEAEIV-VHSDSK 367
Query: 60 IKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVS 119
+ R+ S+ TL + P S++ +++ V+ I S
Sbjct: 368 YHLKKRISSL----TLPIVP------SSEASKVLSRTPILP--STPVTPPLLLPAIGGTS 415
Query: 120 KIDRVSRILFPASFGLLNLFYWISYIT 146
KID+ SRILFP +F NL YWI Y++
Sbjct: 416 KIDQYSRILFPVAFAGFNLVYWIVYLS 442
>sp|Q8QZW7|GBRP_MOUSE Gamma-aminobutyric acid receptor subunit pi OS=Mus musculus
GN=Gabrp PE=2 SV=1
Length = 440
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 39/63 (61%)
Query: 83 DQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWI 142
D ++ ++ + A++K++ +++SR F I + S +DR S++LFP F L N+FYW
Sbjct: 376 DNVNYSDLTMKASDKFKFVFREKISRIIDYFTIQNPSNVDRYSKLLFPLIFMLANVFYWA 435
Query: 143 SYI 145
Y+
Sbjct: 436 YYM 438
>sp|Q16445|GBRA6_HUMAN Gamma-aminobutyric acid receptor subunit alpha-6 OS=Homo sapiens
GN=GABRA6 PE=2 SV=2
Length = 453
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 22/149 (14%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNI----- 57
F + + ++EFAAV+YFT + + + + + P +S+ E + I
Sbjct: 311 FAFVFSALIEFAAVNYFTNLQTQK-----AKRKAQFAAPPTVTISKATEPLEAEIVLHPD 365
Query: 58 HKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINS 117
K + R+ S+ +L + +S+ E N V + + V+
Sbjct: 366 SKYHLKKRITSL----SLPI-------VSSSEANKVLT-RAPILQSTPVTPPPLSPAFGG 413
Query: 118 VSKIDRVSRILFPASFGLLNLFYWISYIT 146
SKID+ SRILFP +F NL YW+ Y++
Sbjct: 414 TSKIDQYSRILFPVAFAGFNLVYWVVYLS 442
>sp|Q90845|GBRA6_CHICK Gamma-aminobutyric acid receptor subunit alpha-6 OS=Gallus gallus
GN=GABRA6 PE=2 SV=1
Length = 465
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/150 (27%), Positives = 64/150 (42%), Gaps = 22/150 (14%)
Query: 3 FFYCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYV-SEDE----EDEQTNI 57
F + + ++EFAAV+YFT + + + V +EDE D N+
Sbjct: 311 FAFVFSALIEFAAVNYFTNLQTQRAMRKAARAAALAAALSAATVPAEDEIVSHSDSNCNL 370
Query: 58 HKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYR-KKREQEVSREGYQFHIN 116
K RV SV + DQ + E ++V+N + + +
Sbjct: 371 KK-----RVNSV---------TSQADQ--SPEASIVSNSASQCQPVSAPPPAPPAPPPVG 414
Query: 117 SVSKIDRVSRILFPASFGLLNLFYWISYIT 146
SKID+ SRILFP +F NL YW+ Y++
Sbjct: 415 GTSKIDQYSRILFPVAFAGFNLVYWVVYLS 444
>sp|Q8N1C3|GBRG1_HUMAN Gamma-aminobutyric acid receptor subunit gamma-1 OS=Homo sapiens
GN=GABRG1 PE=2 SV=2
Length = 465
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 108 REGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYI 145
REG + HI ++KID SRI FP +F L NL YW+ Y+
Sbjct: 428 REG-RIHIR-IAKIDSYSRIFFPTAFALFNLVYWVGYL 463
>sp|P23574|GBRG1_RAT Gamma-aminobutyric acid receptor subunit gamma-1 OS=Rattus
norvegicus GN=Gabrg1 PE=2 SV=1
Length = 465
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 108 REGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYI 145
REG + HI ++KID SRI FP +F L NL YW+ Y+
Sbjct: 428 REG-RIHIR-IAKIDSYSRIFFPTAFALFNLVYWVGYL 463
>sp|Q9D6F4|GBRA4_MOUSE Gamma-aminobutyric acid receptor subunit alpha-4 OS=Mus musculus
GN=Gabra4 PE=2 SV=1
Length = 552
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 116 NSVSKIDRVSRILFPASFGLLNLFYWISYIT 146
+ SKID+ +RILFP +FG N+ YW+ Y++
Sbjct: 511 SGTSKIDKYARILFPVTFGAFNMVYWVVYLS 541
>sp|Q9R0Y8|GBRG1_MOUSE Gamma-aminobutyric acid receptor subunit gamma-1 OS=Mus musculus
GN=Gabrg1 PE=2 SV=2
Length = 465
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 108 REGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYI 145
REG + HI ++KID SRI FP +F L NL YW+ Y+
Sbjct: 428 REG-RIHIR-IAKIDSYSRIFFPTAFALFNLVYWVGYL 463
>sp|O09028|GBRP_RAT Gamma-aminobutyric acid receptor subunit pi OS=Rattus norvegicus
GN=Gabrp PE=2 SV=1
Length = 440
Score = 42.7 bits (99), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 38/63 (60%)
Query: 83 DQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWI 142
D ++ ++ + A++K++ +++ R F I + S +DR S++LFP F L N+FYW
Sbjct: 376 DNVNYSDLTMKASDKFKFVFREKIGRIIDYFTIQNPSNVDRYSKLLFPLIFMLANVFYWA 435
Query: 143 SYI 145
Y+
Sbjct: 436 YYM 438
>sp|P28471|GBRA4_RAT Gamma-aminobutyric acid receptor subunit alpha-4 OS=Rattus
norvegicus GN=Gabra4 PE=2 SV=1
Length = 552
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 119 SKIDRVSRILFPASFGLLNLFYWISYIT 146
SKID+ +RILFP +FG N+ YW+ Y++
Sbjct: 514 SKIDKYARILFPVTFGAFNMVYWVVYLS 541
>sp|P20237|GBRA4_BOVIN Gamma-aminobutyric acid receptor subunit alpha-4 OS=Bos taurus
GN=GABRA4 PE=2 SV=2
Length = 555
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 116 NSVSKIDRVSRILFPASFGLLNLFYWISYIT 146
+ SKID+ +RILFP +FG N+ YW+ Y++
Sbjct: 514 SGTSKIDKYARILFPVTFGAFNMVYWVVYLS 544
>sp|P48169|GBRA4_HUMAN Gamma-aminobutyric acid receptor subunit alpha-4 OS=Homo sapiens
GN=GABRA4 PE=2 SV=2
Length = 554
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 119 SKIDRVSRILFPASFGLLNLFYWISYIT 146
SKID+ +RILFP +FG N+ YW+ Y++
Sbjct: 516 SKIDKYARILFPVTFGAFNMVYWVVYLS 543
>sp|P24045|GBRB4_CHICK Gamma-aminobutyric acid receptor subunit beta-4 OS=Gallus gallus
GN=GABRB4 PE=2 SV=1
Length = 488
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 115 INSVSKIDRVSRILFPASFGLLNLFYWISYI 145
+ VS ID+ SRI+FP +FG NL YW+ Y+
Sbjct: 457 LTDVSTIDKWSRIIFPITFGFFNLVYWLYYV 487
>sp|A8MPY1|GBRR3_HUMAN Gamma-aminobutyric acid receptor subunit rho-3 OS=Homo sapiens
GN=GABRR3 PE=2 SV=2
Length = 467
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/152 (24%), Positives = 65/152 (42%), Gaps = 27/152 (17%)
Query: 1 MSFFYCIATILEFAAVHYFTKT-------GSGEIPFLVSSDEIRVHPHPKSYVSEDEEDE 53
+S + +++E+AAV+Y T +G+I + + D ++ Y + + +
Sbjct: 336 VSSLFVFLSVIEYAAVNYLTTVEERKQFKKTGKISRMYNIDAVQAMAFDGCYHDSEIDMD 395
Query: 54 QTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQF 113
QT++ D+ +R +C STD R KR + + +
Sbjct: 396 QTSLSLNSEDF-------MRRKSICSP-----STDSS--------RIKRRKSLGGHVGRI 435
Query: 114 HINSVSKIDRVSRILFPASFGLLNLFYWISYI 145
+ + ID SRILFP + L NLFYW Y+
Sbjct: 436 ILENNHVIDTYSRILFPIVYILFNLFYWGVYV 467
>sp|Q9UN88|GBRT_HUMAN Gamma-aminobutyric acid receptor subunit theta OS=Homo sapiens
GN=GABRQ PE=2 SV=2
Length = 632
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 109 EGYQFHI---NSVSKIDRVSRILFPASFGLLNLFYWISYI 145
EG+ F + + V K+D+ SR LFP +FGL N+ YW+ ++
Sbjct: 592 EGFSFDLFNPDYVPKVDKWSRFLFPLAFGLFNIVYWVYHM 631
>sp|P57695|GLRA1_BOVIN Glycine receptor subunit alpha-1 OS=Bos taurus GN=GLRA1 PE=2 SV=1
Length = 457
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 109 EGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISY 144
E + I KID++SRI FP +F + N+FYWI Y
Sbjct: 411 EMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIY 446
>sp|P63137|GBRB2_MOUSE Gamma-aminobutyric acid receptor subunit beta-2 OS=Mus musculus
GN=Gabrb2 PE=1 SV=2
Length = 512
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 94 ANEKYRKKREQEVSREGYQFHIN-----SVSKIDRVSRILFPASFGLLNLFYWISYI 145
A E++ +++ + R Q I V+ IDR SRI FP F N+ YW+ Y+
Sbjct: 455 ALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 511
>sp|P23415|GLRA1_HUMAN Glycine receptor subunit alpha-1 OS=Homo sapiens GN=GLRA1 PE=1 SV=2
Length = 457
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 109 EGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISY 144
E + I KID++SRI FP +F + N+FYWI Y
Sbjct: 411 EMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIY 446
>sp|D1LYT2|GBRB2_MACMU Gamma-aminobutyric acid receptor subunit beta-2 OS=Macaca mulatta
GN=GABRB2 PE=2 SV=1
Length = 512
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 94 ANEKYRKKREQEVSREGYQFHIN-----SVSKIDRVSRILFPASFGLLNLFYWISYI 145
A E++ +++ + R Q I V+ IDR SRI FP F N+ YW+ Y+
Sbjct: 455 ALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 511
>sp|P47870|GBRB2_HUMAN Gamma-aminobutyric acid receptor subunit beta-2 OS=Homo sapiens
GN=GABRB2 PE=1 SV=2
Length = 512
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 94 ANEKYRKKREQEVSREGYQFHIN-----SVSKIDRVSRILFPASFGLLNLFYWISYI 145
A E++ +++ + R Q I V+ IDR SRI FP F N+ YW+ Y+
Sbjct: 455 ALERHVAQKKSRLRRRASQLKITIPDLTDVNAIDRWSRIFFPVVFSFFNIVYWLYYV 511
>sp|Q64018|GLRA1_MOUSE Glycine receptor subunit alpha-1 OS=Mus musculus GN=Glra1 PE=1 SV=2
Length = 457
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 109 EGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISY 144
E + I KID++SRI FP +F + N+FYWI Y
Sbjct: 411 EMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIY 446
>sp|P07727|GLRA1_RAT Glycine receptor subunit alpha-1 OS=Rattus norvegicus GN=Glra1 PE=1
SV=4
Length = 457
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 109 EGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISY 144
E + I KID++SRI FP +F + N+FYWI Y
Sbjct: 411 EMRKLFIQRAKKIDKISRIGFPMAFLIFNMFYWIIY 446
>sp|P28473|GBRG3_RAT Gamma-aminobutyric acid receptor subunit gamma-3 OS=Rattus
norvegicus GN=Gabrg3 PE=2 SV=1
Length = 467
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 108 REGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYI 145
R G + HI+ VS++D SR+ FP SF L NL YW+ Y+
Sbjct: 430 RRG-RIHID-VSELDSYSRVFFPTSFLLFNLVYWVGYL 465
>sp|P27681|GBRG3_MOUSE Gamma-aminobutyric acid receptor subunit gamma-3 OS=Mus musculus
GN=Gabrg3 PE=2 SV=2
Length = 467
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 108 REGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYI 145
R G + HI+ VS++D SR+ FP SF L NL YW+ Y+
Sbjct: 430 RRG-RIHID-VSELDSYSRVFFPTSFLLFNLVYWVGYL 465
>sp|Q09453|GLRB4_CAEEL Glycine receptor subunit beta-type 4 OS=Caenorhabditis elegans
GN=ggr-1 PE=3 SV=2
Length = 473
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 117 SVSKIDRVSRILFPASFGLLNLFYWISYI 145
+ KIDR SR LFP +F + N+FYWI Y+
Sbjct: 433 NAQKIDRYSRALFPLAFIIFNIFYWIYYL 461
>sp|Q94900|GLUCL_DROME Glutamate-gated chloride channel OS=Drosophila melanogaster
GN=GluClalpha PE=1 SV=2
Length = 456
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 18/150 (12%)
Query: 5 YCIATILEFAAVHYFTKTGSGEIPFLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIK--V 62
+ +LEFA V+Y +++GS + + H +S + + EQ ++ +
Sbjct: 317 FVFGALLEFALVNYASRSGSN-----------KANMHKESMKKKRRDLEQASLDAASDLL 365
Query: 63 DYRVCSVYEIRTLKVCPNIVDQLSTDEVNLVANEKYRKKREQEVSREGYQFHINSVSK-- 120
D + + ++ L P D L+ ++ KR +F S+
Sbjct: 366 DTDSNATFAMKPLVRHPG--DPLALEKRLQCEVHMQAPKRPNCCKTWLSKFPTRQCSRSK 423
Query: 121 -IDRVSRILFPASFGLLNLFYWISYITDQE 149
ID +SRI FP F L NL YW +Y+ +E
Sbjct: 424 RIDVISRITFPLVFALFNLVYWSTYLFREE 453
>sp|P18508|GBRG2_RAT Gamma-aminobutyric acid receptor subunit gamma-2 OS=Rattus
norvegicus GN=Gabrg2 PE=1 SV=1
Length = 466
Score = 39.7 bits (91), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Query: 108 REGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYI 145
R G + HI ++K+D +RI FP +F L NL YW+SY+
Sbjct: 429 RHG-RIHIR-IAKMDSYARIFFPTAFCLFNLVYWVSYL 464
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,465,923
Number of Sequences: 539616
Number of extensions: 2359151
Number of successful extensions: 6347
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 6195
Number of HSP's gapped (non-prelim): 163
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)