Query psy12319
Match_columns 161
No_of_seqs 185 out of 456
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 16:01:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12319.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12319hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3643|consensus 99.8 2.8E-20 6E-25 167.0 5.2 29 117-145 430-458 (459)
2 KOG3642|consensus 99.8 7.8E-20 1.7E-24 164.7 4.0 37 116-152 427-463 (466)
3 KOG3644|consensus 99.6 2.8E-15 6.2E-20 135.9 5.4 30 117-146 427-456 (457)
4 PF02932 Neur_chan_memb: Neuro 99.1 1E-10 2.2E-15 87.4 6.2 28 114-141 210-237 (237)
5 TIGR00860 LIC Cation transport 98.0 1.2E-05 2.7E-10 72.7 6.0 31 114-144 429-459 (459)
6 PRK02919 oxaloacetate decarbox 43.5 17 0.00037 26.2 1.8 22 1-23 18-39 (82)
7 PF07436 Curto_V3: Curtovirus 43.2 11 0.00025 27.3 0.8 25 3-28 10-34 (87)
8 PF04750 Far-17a_AIG1: FAR-17a 37.1 23 0.00049 28.1 1.8 25 122-147 69-94 (201)
9 PF15202 Adipogenin: Adipogeni 22.1 1.1E+02 0.0024 21.8 2.9 22 127-148 21-42 (81)
10 TIGR02976 phageshock_pspB phag 20.2 1.2E+02 0.0026 21.5 2.8 26 1-26 1-34 (75)
11 smart00394 RIIa RIIalpha, Regu 20.0 55 0.0012 19.6 0.9 13 10-23 22-34 (38)
No 1
>KOG3643|consensus
Probab=99.80 E-value=2.8e-20 Score=167.02 Aligned_cols=29 Identities=55% Similarity=1.149 Sum_probs=27.5
Q ss_pred CchhhHhHHHHHHhHHHHHHHHHHHHHhh
Q psy12319 117 SVSKIDRVSRILFPASFGLLNLFYWISYI 145 (161)
Q Consensus 117 ~~~~iD~~sRi~FP~~F~~FNi~YW~~Y~ 145 (161)
.++.||+|||++||++|++||++||.||.
T Consensus 430 ~~~~IDkySR~~FP~~F~lFNivYW~yy~ 458 (459)
T KOG3643|consen 430 DVSKIDKYSRIVFPLAFSLFNIVYWLYYM 458 (459)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHhheee
Confidence 38899999999999999999999999996
No 2
>KOG3642|consensus
Probab=99.78 E-value=7.8e-20 Score=164.65 Aligned_cols=37 Identities=49% Similarity=0.781 Sum_probs=33.1
Q ss_pred cCchhhHhHHHHHHhHHHHHHHHHHHHHhhhcccccc
Q psy12319 116 NSVSKIDRVSRILFPASFGLLNLFYWISYITDQENFV 152 (161)
Q Consensus 116 ~~~~~iD~~sRi~FP~~F~~FNi~YW~~Y~~~~~~~~ 152 (161)
+...+||++|||+||++|++||++||..||+...++.
T Consensus 427 ~~vskiD~~sRivFPv~F~~fNlvYW~~yL~~~~~i~ 463 (466)
T KOG3642|consen 427 ISVSKIDNYSRIVFPVLFILFNLVYWVVYLNLEPIIK 463 (466)
T ss_pred cchhhhhccchhhhHHHHHHHHHHHHhhhccccchhc
Confidence 4678999999999999999999999999998776553
No 3
>KOG3644|consensus
Probab=99.56 E-value=2.8e-15 Score=135.90 Aligned_cols=30 Identities=47% Similarity=1.006 Sum_probs=28.4
Q ss_pred CchhhHhHHHHHHhHHHHHHHHHHHHHhhh
Q psy12319 117 SVSKIDRVSRILFPASFGLLNLFYWISYIT 146 (161)
Q Consensus 117 ~~~~iD~~sRi~FP~~F~~FNi~YW~~Y~~ 146 (161)
.+++||++||++||++|++||++||++|+.
T Consensus 427 ~~~~ID~~sr~~FP~~F~~FN~~YW~~y~~ 456 (457)
T KOG3644|consen 427 TAERIDRISRFLFPLLFLLFNIIYWTYYLK 456 (457)
T ss_pred chHHHhHHHHHHHHHHHHHHHHHHhhheEe
Confidence 688999999999999999999999999974
No 4
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=99.13 E-value=1e-10 Score=87.39 Aligned_cols=28 Identities=46% Similarity=0.800 Sum_probs=25.9
Q ss_pred eccCchhhHhHHHHHHhHHHHHHHHHHH
Q psy12319 114 HINSVSKIDRVSRILFPASFGLLNLFYW 141 (161)
Q Consensus 114 ~~~~~~~iD~~sRi~FP~~F~~FNi~YW 141 (161)
+...+..||+++|++||++|++||++||
T Consensus 210 w~~~A~viDR~~~~~F~i~f~~~~i~yw 237 (237)
T PF02932_consen 210 WKFVAMVIDRLFRILFPIAFILFNIVYW 237 (237)
T ss_dssp HHSTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 3457999999999999999999999999
No 5
>TIGR00860 LIC Cation transporter family protein. selective while glycine receptors are anion selective).
Probab=97.98 E-value=1.2e-05 Score=72.68 Aligned_cols=31 Identities=42% Similarity=0.782 Sum_probs=28.1
Q ss_pred eccCchhhHhHHHHHHhHHHHHHHHHHHHHh
Q psy12319 114 HINSVSKIDRVSRILFPASFGLLNLFYWISY 144 (161)
Q Consensus 114 ~~~~~~~iD~~sRi~FP~~F~~FNi~YW~~Y 144 (161)
+...+..||+++|++||++|+++|++||.+|
T Consensus 429 W~~~a~viDr~~~~~f~~~~~~~~~~~~~~y 459 (459)
T TIGR00860 429 WKFRAKVIDKLSRMAFPLAFLLFNIGYWMSY 459 (459)
T ss_pred hhhccchhhHHHHHHHHHHHHHhhhhheEeC
Confidence 3456889999999999999999999999987
No 6
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=43.47 E-value=17 Score=26.18 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=17.9
Q ss_pred CchHHHHHHHHHHHhhhhhhhcC
Q psy12319 1 MSFFYCIATILEFAAVHYFTKTG 23 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk~~ 23 (161)
|+++|+|-+||=|+ +++++|.-
T Consensus 18 Mg~VfvFL~lLI~~-i~~ms~l~ 39 (82)
T PRK02919 18 MGFVLAFLFLLIFA-IRGMSALI 39 (82)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHH
Confidence 78999999999776 48888743
No 7
>PF07436 Curto_V3: Curtovirus V3 protein; InterPro: IPR009997 This family consists of several Curtovirus V3 proteins of around 90 residues in length. The function of this family is unknown.
Probab=43.21 E-value=11 Score=27.30 Aligned_cols=25 Identities=16% Similarity=0.537 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHhhhhhhhcCCCccc
Q psy12319 3 FFYCIATILEFAAVHYFTKTGSGEIP 28 (161)
Q Consensus 3 FlfVFAaLLEyA~VnY~tk~~s~~~~ 28 (161)
++|+|+.||+ |+-||+...|+|.|.
T Consensus 10 LlFifsillQ-sgtNfYGTfqSgsiS 34 (87)
T PF07436_consen 10 LLFIFSILLQ-SGTNFYGTFQSGSIS 34 (87)
T ss_pred HHHHHHHHHh-cCCceeeeeccchHH
Confidence 5788877776 788999999998864
No 8
>PF04750 Far-17a_AIG1: FAR-17a/AIG1-like protein; InterPro: IPR006838 This entry includes the hamster androgen-induced FAR-17a protein (Q60534 from SWISSPROT) []. The function of these proteins is unknown but it is thought to have a central role in the fusion process during myogenesis, within the somatic mesoderm. This entry also includes homologous regions from a number of other metazoan proteins.; GO: 0016021 integral to membrane
Probab=37.15 E-value=23 Score=28.14 Aligned_cols=25 Identities=32% Similarity=0.743 Sum_probs=20.3
Q ss_pred HhH-HHHHHhHHHHHHHHHHHHHhhhc
Q psy12319 122 DRV-SRILFPASFGLLNLFYWISYITD 147 (161)
Q Consensus 122 D~~-sRi~FP~~F~~FNi~YW~~Y~~~ 147 (161)
|.. +-++||+.+++. ++||..|...
T Consensus 69 ~~~~~~~~~pl~~~V~-~~yW~l~~~d 94 (201)
T PF04750_consen 69 DWLFYSLAFPLEFIVT-VVYWSLYLID 94 (201)
T ss_pred HHHHHHHHHHHHhcch-hhhhhHHhCC
Confidence 444 579999999998 9999999643
No 9
>PF15202 Adipogenin: Adipogenin
Probab=22.14 E-value=1.1e+02 Score=21.85 Aligned_cols=22 Identities=23% Similarity=0.644 Sum_probs=18.3
Q ss_pred HHHhHHHHHHHHHHHHHhhhcc
Q psy12319 127 ILFPASFGLLNLFYWISYITDQ 148 (161)
Q Consensus 127 i~FP~~F~~FNi~YW~~Y~~~~ 148 (161)
...|++.++|.+|-|..++..+
T Consensus 21 lclpv~lllfl~ivwlrfllsq 42 (81)
T PF15202_consen 21 LCLPVGLLLFLLIVWLRFLLSQ 42 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc
Confidence 4469999999999999998643
No 10
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=20.17 E-value=1.2e+02 Score=21.48 Aligned_cols=26 Identities=27% Similarity=0.559 Sum_probs=16.0
Q ss_pred CchHHHHHHHHHHH--------hhhhhhhcCCCc
Q psy12319 1 MSFFYCIATILEFA--------AVHYFTKTGSGE 26 (161)
Q Consensus 1 ~CFlfVFAaLLEyA--------~VnY~tk~~s~~ 26 (161)
|++.|.+.-|+=|. ..||.+|.+.+.
T Consensus 1 m~~~fl~~Pliif~ifVap~wl~lHY~~k~~~~~ 34 (75)
T TIGR02976 1 MSIFFLAIPLIIFVIFVAPLWLILHYRSKRKTAA 34 (75)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Confidence 45555555555554 569999865553
No 11
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=20.00 E-value=55 Score=19.62 Aligned_cols=13 Identities=46% Similarity=0.879 Sum_probs=8.6
Q ss_pred HHHHHhhhhhhhcC
Q psy12319 10 ILEFAAVHYFTKTG 23 (161)
Q Consensus 10 LLEyA~VnY~tk~~ 23 (161)
+++||+ +||.|+.
T Consensus 22 ~~~f~~-~yF~kL~ 34 (38)
T smart00394 22 LVQFAA-DYFEKLE 34 (38)
T ss_pred HHHHHH-HHHHHHH
Confidence 467776 7777643
Done!