Query psy12319
Match_columns 161
No_of_seqs 185 out of 456
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 16:01:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12319.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12319hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rhw_A Avermectin-sensitive gl 98.8 1.2E-09 4E-14 92.9 3.7 30 118-147 312-341 (347)
2 1vry_A Glycine receptor alpha- 98.7 4.4E-09 1.5E-13 74.0 1.6 26 1-26 41-66 (76)
3 3tlw_A GLR4197 protein, GLIC; 98.1 2.8E-06 9.5E-11 71.2 4.5 28 118-145 292-319 (321)
4 2bg9_A Acetylcholine receptor 96.3 0.002 6.8E-08 55.1 3.2 26 115-140 333-358 (370)
5 2bg9_E Acetylcholine receptor 95.6 0.0055 1.9E-07 52.3 2.8 24 117-140 336-359 (370)
6 2bg9_B Acetylcholine receptor 95.5 0.0093 3.2E-07 51.0 3.6 27 116-142 331-357 (370)
7 2bg9_C Acetylcholine receptor 94.7 0.019 6.4E-07 49.1 3.3 26 116-141 333-358 (369)
8 3rqw_A ELIC pentameric ligand 91.7 0.066 2.3E-06 44.5 1.9 24 1-24 268-291 (322)
9 2ksr_A Neuronal acetylcholine 85.0 0.39 1.3E-05 37.3 2.0 21 1-21 97-117 (164)
10 2lly_A Neuronal acetylcholine 82.7 0.79 2.7E-05 34.4 2.8 21 1-21 76-96 (137)
11 4aq5_A Acetylcholine receptor 64.6 3.1 0.00011 36.6 2.3 23 1-23 304-326 (461)
12 1oed_A Acetylcholine receptor 52.3 7 0.00024 31.5 2.2 20 1-20 70-89 (227)
13 4aq5_B Acetylcholine receptor 50.4 7.5 0.00026 34.4 2.3 22 1-22 310-331 (493)
14 1oed_B Acetylcholine receptor 47.9 10 0.00034 31.0 2.5 21 1-21 70-90 (250)
15 4aq5_E Acetylcholine receptor 47.8 9.3 0.00032 33.8 2.5 23 1-23 288-310 (488)
16 4aq5_C Acetylcholine receptor 30.8 24 0.00082 31.4 2.3 22 1-22 315-336 (522)
17 1oed_E Acetylcholine receptor 29.9 26 0.00088 28.7 2.2 21 1-21 71-92 (260)
18 1oed_C Acetylcholine receptor 22.4 43 0.0015 27.4 2.2 21 1-21 70-90 (260)
No 1
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=98.85 E-value=1.2e-09 Score=92.92 Aligned_cols=30 Identities=33% Similarity=0.756 Sum_probs=26.9
Q ss_pred chhhHhHHHHHHhHHHHHHHHHHHHHhhhc
Q psy12319 118 VSKIDRVSRILFPASFGLLNLFYWISYITD 147 (161)
Q Consensus 118 ~~~iD~~sRi~FP~~F~~FNi~YW~~Y~~~ 147 (161)
+.++|+++|++||++|++||+.||..|-..
T Consensus 312 ~~~~~~~~~~~~p~~~~i~n~~~~~~~~~~ 341 (347)
T 3rhw_A 312 SKRVDLISRALFPVLFFVFNILYWSRFGHH 341 (347)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 669999999999999999999999998643
No 2
>1vry_A Glycine receptor alpha-1 chain; second transmembrane domain, third transmembrane domain, membrane protein; NMR {Homo sapiens} SCOP: j.35.1.1
Probab=98.68 E-value=4.4e-09 Score=74.01 Aligned_cols=26 Identities=19% Similarity=0.593 Sum_probs=20.1
Q ss_pred CchHHHHHHHHHHHhhhhhhhcCCCc
Q psy12319 1 MSFFYCIATILEFAAVHYFTKTGSGE 26 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk~~s~~ 26 (161)
+||+|||+||||||+|||++|++.+.
T Consensus 41 ~C~~FVF~aLlEya~V~y~~r~~~~~ 66 (76)
T 1vry_A 41 VCLLFVFSALLEYAAVNFVSRKKKKH 66 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 59999999999999999999754443
No 3
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=98.07 E-value=2.8e-06 Score=71.21 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=24.0
Q ss_pred chhhHhHHHHHHhHHHHHHHHHHHHHhh
Q psy12319 118 VSKIDRVSRILFPASFGLLNLFYWISYI 145 (161)
Q Consensus 118 ~~~iD~~sRi~FP~~F~~FNi~YW~~Y~ 145 (161)
+.++|+..|++||++|+++|++|+.+..
T Consensus 292 a~~~p~w~r~~fp~~f~~~~~i~~~~~~ 319 (321)
T 3tlw_A 292 AASITRASRIAFPVVFLLANIILAFLFF 319 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccChhheeeehHHHHHHHHHHHhhhc
Confidence 4488899999999999999998877664
No 4
>2bg9_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=96.33 E-value=0.002 Score=55.13 Aligned_cols=26 Identities=12% Similarity=-0.069 Sum_probs=21.5
Q ss_pred ccCchhhHhHHHHHHhHHHHHHHHHH
Q psy12319 115 INSVSKIDRVSRILFPASFGLLNLFY 140 (161)
Q Consensus 115 ~~~~~~iD~~sRi~FP~~F~~FNi~Y 140 (161)
..-+..||+++.++||++|++..++.
T Consensus 333 ~~~a~vlDr~~~~~f~~~~~~~t~~i 358 (370)
T 2bg9_A 333 KYVAMVIDHILLCVFMLICIIGTVSV 358 (370)
T ss_dssp TSCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34588999999999999998876653
No 5
>2bg9_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=95.63 E-value=0.0055 Score=52.34 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=21.5
Q ss_pred CchhhHhHHHHHHhHHHHHHHHHH
Q psy12319 117 SVSKIDRVSRILFPASFGLLNLFY 140 (161)
Q Consensus 117 ~~~~iD~~sRi~FP~~F~~FNi~Y 140 (161)
.+..||+++.++|+++|++.+++-
T Consensus 336 ~a~vlDr~~~~~f~~~~~~~t~~i 359 (370)
T 2bg9_E 336 IGKVIDKACFWIALLLFSLGTLAI 359 (370)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588999999999999999998764
No 6
>2bg9_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=95.46 E-value=0.0093 Score=51.00 Aligned_cols=27 Identities=11% Similarity=0.114 Sum_probs=23.3
Q ss_pred cCchhhHhHHHHHHhHHHHHHHHHHHH
Q psy12319 116 NSVSKIDRVSRILFPASFGLLNLFYWI 142 (161)
Q Consensus 116 ~~~~~iD~~sRi~FP~~F~~FNi~YW~ 142 (161)
.-+..||+++.++|+++|++++++...
T Consensus 331 ~~a~v~Dr~~~~~f~~~~~~~t~~i~~ 357 (370)
T 2bg9_B 331 YVAMVADRLFLYIFITMCSIGTFSIFL 357 (370)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 358899999999999999999987543
No 7
>2bg9_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, electron microscopy, ION transport, postsynaptic membrane; 4.00A {Torpedo marmorata}
Probab=94.67 E-value=0.019 Score=49.09 Aligned_cols=26 Identities=23% Similarity=0.309 Sum_probs=22.6
Q ss_pred cCchhhHhHHHHHHhHHHHHHHHHHH
Q psy12319 116 NSVSKIDRVSRILFPASFGLLNLFYW 141 (161)
Q Consensus 116 ~~~~~iD~~sRi~FP~~F~~FNi~YW 141 (161)
.-+..||+++.++|+++|++.+++..
T Consensus 333 ~~a~vlDr~~~~~f~~~~~~~~~~i~ 358 (369)
T 2bg9_C 333 LVGQTIDRLSMFIITPVMVLGTIFIF 358 (369)
T ss_dssp HCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999988754
No 8
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi; membrane, transport protein; HET: ACH MES; 2.91A {Dickeya dadantii} PDB: 2yn6_A* 3rqu_A* 3uq4_A 3uq5_A 3uq7_A 2vl0_A 2yks_A 4a97_A* 4a96_A* 2yoe_A* 4a98_A*
Probab=91.69 E-value=0.066 Score=44.46 Aligned_cols=24 Identities=21% Similarity=0.142 Sum_probs=20.8
Q ss_pred CchHHHHHHHHHHHhhhhhhhcCC
Q psy12319 1 MSFFYCIATILEFAAVHYFTKTGS 24 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk~~s 24 (161)
+|++|||++|+|+|.|+|+.+++.
T Consensus 268 ~~~~~v~~sll~~~~v~~l~~~~~ 291 (322)
T 3rqw_A 268 AGYGSIFAAILLIIFAHHRQANGV 291 (322)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHccCc
Confidence 489999999999999999986433
No 9
>2ksr_A Neuronal acetylcholine receptor subunit beta-2; nicotinic acetylcholine receptors, transmembrane domain, HFI junction, cell membrane; NMR {Homo sapiens} PDB: 2lm2_A
Probab=84.95 E-value=0.39 Score=37.32 Aligned_cols=21 Identities=10% Similarity=0.120 Sum_probs=18.7
Q ss_pred CchHHHHHHHHHHHhhhhhhh
Q psy12319 1 MSFFYCIATILEFAAVHYFTK 21 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk 21 (161)
+|++||++|++|++.|+++.+
T Consensus 97 ~~m~~v~~sll~tv~Vl~~~~ 117 (164)
T 2ksr_A 97 FTMVLVTFSIVTSVCVLNVHH 117 (164)
T ss_dssp HHHHHHHHHHHTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhhhhhc
Confidence 489999999999999988774
No 10
>2lly_A Neuronal acetylcholine receptor subunit alpha-4; transmembrane domain, transport PROT; NMR {Homo sapiens}
Probab=82.71 E-value=0.79 Score=34.37 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=18.5
Q ss_pred CchHHHHHHHHHHHhhhhhhh
Q psy12319 1 MSFFYCIATILEFAAVHYFTK 21 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk 21 (161)
+|++|||+|++|++.|.++..
T Consensus 76 ~~~~~v~~sl~~tv~V~~~~~ 96 (137)
T 2lly_A 76 FTMIFVTLSIVITVFVLNVHH 96 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHhhhhhhhhhHHh
Confidence 489999999999999987764
No 11
>4aq5_A Acetylcholine receptor subunit alpha; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_A
Probab=64.60 E-value=3.1 Score=36.64 Aligned_cols=23 Identities=13% Similarity=0.268 Sum_probs=20.4
Q ss_pred CchHHHHHHHHHHHhhhhhhhcC
Q psy12319 1 MSFFYCIATILEFAAVHYFTKTG 23 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk~~ 23 (161)
+|++|||++|+|++.|.++..++
T Consensus 304 ~~m~~v~~sll~tv~Vl~l~~r~ 326 (461)
T 4aq5_A 304 FTMIFVISSIIVTVVVINTHHRS 326 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHhhheeeeccC
Confidence 48999999999999999998653
No 12
>1oed_A Acetylcholine receptor protein, alpha chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1dxz_A 3mra_A 2k59_B
Probab=52.29 E-value=7 Score=31.52 Aligned_cols=20 Identities=15% Similarity=0.282 Sum_probs=16.9
Q ss_pred CchHHHHHHHHHHHhhhhhh
Q psy12319 1 MSFFYCIATILEFAAVHYFT 20 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~t 20 (161)
+|++||+++++|++.|.++.
T Consensus 70 ~~m~~v~~sl~~tv~vln~~ 89 (227)
T 1oed_A 70 FTMIFVISSIIITVVVINTH 89 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 48999999999999995544
No 13
>4aq5_B Acetylcholine receptor beta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_B
Probab=50.38 E-value=7.5 Score=34.43 Aligned_cols=22 Identities=5% Similarity=0.055 Sum_probs=19.8
Q ss_pred CchHHHHHHHHHHHhhhhhhhc
Q psy12319 1 MSFFYCIATILEFAAVHYFTKT 22 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk~ 22 (161)
+|++|||++|+|++.|.++..+
T Consensus 310 ~~m~~v~lsll~tv~Vl~l~~r 331 (493)
T 4aq5_B 310 FIMILVAFSVILSVVVLNLHHR 331 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhheeeecc
Confidence 4899999999999999999755
No 14
>1oed_B Acetylcholine receptor protein, beta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 2k58_B
Probab=47.89 E-value=10 Score=31.05 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=17.2
Q ss_pred CchHHHHHHHHHHHhhhhhhh
Q psy12319 1 MSFFYCIATILEFAAVHYFTK 21 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk 21 (161)
+|++||+++++|++.|..+..
T Consensus 70 ~~m~~v~~sl~~tv~Vln~~~ 90 (250)
T 1oed_B 70 FIMILVAFSVILSVVVLNLHH 90 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheeeeec
Confidence 389999999999999955443
No 15
>4aq5_E Acetylcholine receptor gamma subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_E
Probab=47.78 E-value=9.3 Score=33.78 Aligned_cols=23 Identities=9% Similarity=0.147 Sum_probs=20.2
Q ss_pred CchHHHHHHHHHHHhhhhhhhcC
Q psy12319 1 MSFFYCIATILEFAAVHYFTKTG 23 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk~~ 23 (161)
+|++||+++|+|++.|.++..+.
T Consensus 288 ~~m~lv~~Sll~tv~Vlnl~~r~ 310 (488)
T 4aq5_E 288 FVMFVSLVIVTNCVIVLNVSLRT 310 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhhEEEEEccC
Confidence 48999999999999999998653
No 16
>4aq5_C Acetylcholine receptor delta subunit; membrane protein, freeze-trapping, asymmetric gating, allost mechanism; 6.20A {Torpedo marmorata} PDB: 4aq9_C
Probab=30.78 E-value=24 Score=31.44 Aligned_cols=22 Identities=9% Similarity=0.101 Sum_probs=19.7
Q ss_pred CchHHHHHHHHHHHhhhhhhhc
Q psy12319 1 MSFFYCIATILEFAAVHYFTKT 22 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk~ 22 (161)
+|++||+++|+|++.|.++..+
T Consensus 315 ~~m~lv~lSll~tviVlnl~~r 336 (522)
T 4aq5_C 315 FIMSLVTGVVVNCGIVLNFHFR 336 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHheEEEEEcc
Confidence 4899999999999999999765
No 17
>1oed_E Acetylcholine receptor protein, gamma chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1
Probab=29.91 E-value=26 Score=28.72 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=17.0
Q ss_pred CchHHHHHHHHHHHhh-hhhhh
Q psy12319 1 MSFFYCIATILEFAAV-HYFTK 21 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~V-nY~tk 21 (161)
+|++||+++++|++.| |+..|
T Consensus 71 ~~m~~v~~sl~~tv~vln~~~r 92 (260)
T 1oed_E 71 FVMFVSMLIVMNCVIVLNVSLR 92 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhheeeeecc
Confidence 4899999999999987 55544
No 18
>1oed_C Acetylcholine receptor protein, delta chain; ION channel/receptor, ION channel, tubular crystal, transmembrane; 4.0A {Torpedo marmorata} SCOP: f.36.1.1 PDB: 1a11_A 1cek_A 1eq8_A
Probab=22.36 E-value=43 Score=27.37 Aligned_cols=21 Identities=14% Similarity=0.123 Sum_probs=17.4
Q ss_pred CchHHHHHHHHHHHhhhhhhh
Q psy12319 1 MSFFYCIATILEFAAVHYFTK 21 (161)
Q Consensus 1 ~CFlfVFAaLLEyA~VnY~tk 21 (161)
+|+++|+++++|++.|..+..
T Consensus 70 ~~m~~v~~s~~~tv~vl~~~~ 90 (260)
T 1oed_C 70 FIMSLVTGVIVNCGIVLNFHF 90 (260)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHheeeeec
Confidence 389999999999999955544
Done!