RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12319
         (161 letters)



>d1bvoa_ b.2.5.3 (A:) Dorsal homologue Gambif1 {African malaria
           mosquito (Anopheles gambiae) [TaxId: 7165]}
          Length = 175

 Score = 25.6 bits (56), Expect = 2.8
 Identities = 19/136 (13%), Positives = 42/136 (30%), Gaps = 26/136 (19%)

Query: 29  FLVSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTD 88
             V+ +     PHP + V ++   +     +I       +            I       
Sbjct: 57  SCVTKEGPEHKPHPHNLVGKEGCKKGVCTVEINSTTMSYTF-------NNLGI---QCVK 106

Query: 89  EVNLVANEKYRKKREQEVSREGYQFHINSVSKIDR-VSRILFPASFGLLNLFYWISYITD 147
           + ++    + R++   +  R G+  H      ID    R+ F              ++  
Sbjct: 107 KKDVEEALRLRQEIRVDPFRTGFG-HAKEPGSIDLNAVRLCFQV------------FLEG 153

Query: 148 QENFVWKDP--PTISH 161
           Q+   + +P  P +S 
Sbjct: 154 QQRGRFTEPLTPVVSD 169


>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain
           {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
          Length = 260

 Score = 24.4 bits (52), Expect = 7.7
 Identities = 9/118 (7%), Positives = 34/118 (28%), Gaps = 4/118 (3%)

Query: 31  VSSDEIRVHPHPKSYVSEDEEDEQTNIHKIKVDYRVCSVYEIRTLKVCPNIVDQLSTDEV 90
                ++       +  + +      ++K+  D  + +  ++           +   +  
Sbjct: 143 AEEYILKKPRSELMFEEQKDRHGLKRVNKMTSDIDIGTTVDLYKDLANFAPEIKSCVEAC 202

Query: 91  NLVANEKYRKKREQEVSREGYQFHINSVSKIDRVSRILFPASFGLLNLFYWISYITDQ 148
           N +A     +      +   +         ID+    +    F +  L  +++   +Q
Sbjct: 203 NFIAKSTKEQNDSGSENEN-WVL---IGKVIDKACFWIALLLFSIGTLAIFLTGHFNQ 256


>d2bg1a1 e.3.1.1 (A:337-789) Penicillin-binding protein 1b,
           transpeptidase domain {Streptococcus pneumoniae [TaxId:
           1313]}
          Length = 453

 Score = 24.2 bits (51), Expect = 9.9
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 83  DQLSTDEV-NLVANEKYRKKREQEVSREGYQFH 114
           D +S  E+ N    + YR    +E+   GY+  
Sbjct: 23  DNVSAKELKNEATQKFYRDLAAKEIENGGYKIT 55


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0422    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 621,395
Number of extensions: 27143
Number of successful extensions: 49
Number of sequences better than 10.0: 1
Number of HSP's gapped: 49
Number of HSP's successfully gapped: 7
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.4 bits)