BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1232
         (67 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1EF1|C Chain C, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
          COMPLEX
 pdb|1EF1|D Chain D, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
          COMPLEX
          Length = 90

 Score = 38.1 bits (87), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 34/57 (59%)

Query: 9  EKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRK 65
          E+ER    EK++ +Q  L+ L +E+   +   K++  D +H E  RLG +KY TLR+
Sbjct: 18 EEERTTEAEKNERVQKHLKALTSELANARDESKKTANDXIHAENXRLGRDKYKTLRQ 74


>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
           Resolution
 pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The Coiled-Coil
           Domain At 3.0 Angstrom Resolution
          Length = 575

 Score = 32.7 bits (73), Expect = 0.051,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 30/48 (62%)

Query: 17  EKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLR 64
           E+++ L +QL+ L+ ++       K++ +D +H E VR G +KY TLR
Sbjct: 511 ERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLR 558


>pdb|4AIP|A Chain A, The Frpb Iron Transporter From Neisseria Meningitidis
           (f3-3 Variant)
 pdb|4AIP|B Chain B, The Frpb Iron Transporter From Neisseria Meningitidis
           (f3-3 Variant)
 pdb|4AIP|C Chain C, The Frpb Iron Transporter From Neisseria Meningitidis
           (f3-3 Variant)
          Length = 742

 Score = 27.3 bits (59), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 18/27 (66%)

Query: 21  HLQDQLRDLRTEIEVLKVGEKQSELDL 47
           H++DQ R +RT  E   VG+K S +++
Sbjct: 270 HMKDQHRGIRTVREEFTVGDKSSRINI 296


>pdb|3RM5|A Chain A, Structure Of Trifunctional Thi20 From Yeast
 pdb|3RM5|B Chain B, Structure Of Trifunctional Thi20 From Yeast
          Length = 550

 Score = 25.8 bits (55), Expect = 6.7,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 3/46 (6%)

Query: 22  LQDQLRDLRTEIEVLKVGE-KQSELDLLHEEQVRLGENKYSTLRKP 66
           L+  L+D++    V+K G    + +++LHE+ ++LGEN+   +  P
Sbjct: 83  LESNLKDMKCN--VIKTGMLTAAAIEVLHEKLLQLGENRPKLVVDP 126


>pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
 pdb|1U1J|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
 pdb|1U1U|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
 pdb|1U22|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase
          Length = 765

 Score = 25.4 bits (54), Expect = 7.6,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 5   SLEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELD---LLHEEQVR 54
           ++E+ + R EY  K    +D ++ ++ EI+  KV + Q ELD   L+H E  R
Sbjct: 443 TVELRRVRREYKAKKVSEEDYVKAIKEEIK--KVVDLQEELDIDVLVHGEPER 493


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.131    0.336 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,722,112
Number of Sequences: 62578
Number of extensions: 53271
Number of successful extensions: 190
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 179
Number of HSP's gapped (non-prelim): 17
length of query: 67
length of database: 14,973,337
effective HSP length: 38
effective length of query: 29
effective length of database: 12,595,373
effective search space: 365265817
effective search space used: 365265817
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)