Query psy1232
Match_columns 67
No_of_seqs 89 out of 107
Neff 4.8
Searched_HMMs 46136
Date Fri Aug 16 16:02:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1232.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1232hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00769 ERM: Ezrin/radixin/mo 99.9 4.2E-27 9.2E-32 167.0 3.6 58 9-66 174-231 (246)
2 KOG3529|consensus 99.4 3.3E-14 7.1E-19 112.0 1.4 64 3-66 518-581 (596)
3 KOG3436|consensus 84.4 1.2 2.7E-05 29.7 2.9 23 18-40 13-35 (123)
4 PF04880 NUDE_C: NUDE protein, 68.3 3.6 7.9E-05 28.4 1.7 26 12-38 26-51 (166)
5 PF05837 CENP-H: Centromere pr 67.2 20 0.00044 22.5 4.9 60 6-66 20-80 (106)
6 smart00338 BRLZ basic region l 63.1 25 0.00054 19.7 4.9 25 15-39 38-62 (65)
7 PF14916 CCDC92: Coiled-coil d 62.5 16 0.00035 21.5 3.5 38 11-48 3-45 (60)
8 PF07061 Swi5: Swi5; InterPro 61.4 18 0.00038 22.2 3.7 33 21-53 18-50 (83)
9 PF06305 DUF1049: Protein of u 57.9 14 0.00029 20.7 2.6 20 18-37 49-68 (68)
10 PF07334 IFP_35_N: Interferon- 51.7 34 0.00074 21.0 3.8 26 14-39 4-29 (76)
11 PF08172 CASP_C: CASP C termin 51.2 40 0.00087 24.4 4.6 20 17-36 93-112 (248)
12 PF00816 Histone_HNS: H-NS his 45.7 65 0.0014 19.2 4.5 36 21-56 2-37 (93)
13 PF08826 DMPK_coil: DMPK coile 45.5 52 0.0011 19.2 3.7 21 17-37 39-59 (61)
14 PRK13729 conjugal transfer pil 42.5 61 0.0013 26.0 4.8 26 9-34 67-93 (475)
15 PRK10722 hypothetical protein; 42.3 65 0.0014 23.8 4.6 26 17-42 183-208 (247)
16 PF09432 THP2: Tho complex sub 41.7 83 0.0018 21.3 4.7 34 6-39 66-100 (132)
17 PRK00888 ftsB cell division pr 41.1 90 0.002 19.6 4.6 24 16-39 40-63 (105)
18 KOG3433|consensus 40.7 1E+02 0.0023 22.1 5.3 41 10-50 115-156 (203)
19 cd00427 Ribosomal_L29_HIP Ribo 40.2 42 0.00091 18.8 2.7 31 19-49 8-38 (57)
20 smart00502 BBC B-Box C-termina 40.1 79 0.0017 18.6 4.4 30 5-37 63-92 (127)
21 PRK10803 tol-pal system protei 37.1 52 0.0011 23.6 3.4 19 21-39 58-76 (263)
22 smart00340 HALZ homeobox assoc 37.0 42 0.00092 18.7 2.3 16 16-31 18-33 (44)
23 PF05615 THOC7: Tho complex su 36.4 1.1E+02 0.0024 19.4 4.6 42 11-52 75-124 (139)
24 PF14282 FlxA: FlxA-like prote 35.4 97 0.0021 19.3 4.1 21 18-38 52-72 (106)
25 PRK00306 50S ribosomal protein 35.3 54 0.0012 18.8 2.7 28 19-46 11-38 (66)
26 PF04977 DivIC: Septum formati 35.2 61 0.0013 18.1 2.9 14 24-37 24-37 (80)
27 PRK10884 SH3 domain-containing 35.2 1.5E+02 0.0033 20.8 5.5 19 18-36 140-158 (206)
28 COG4942 Membrane-bound metallo 34.5 1.4E+02 0.003 23.6 5.6 29 16-44 58-86 (420)
29 PF09730 BicD: Microtubule-ass 34.3 1E+02 0.0022 25.8 5.1 46 13-58 23-70 (717)
30 PRK14549 50S ribosomal protein 34.1 58 0.0013 19.1 2.8 30 20-49 15-45 (69)
31 PF08172 CASP_C: CASP C termin 34.1 99 0.0022 22.3 4.5 29 12-40 94-123 (248)
32 TIGR00012 L29 ribosomal protei 33.8 62 0.0014 18.0 2.8 28 19-46 7-34 (55)
33 PF10146 zf-C4H2: Zinc finger- 33.7 71 0.0015 22.9 3.7 34 16-49 80-114 (230)
34 PF07798 DUF1640: Protein of u 33.7 1.4E+02 0.0031 19.9 4.9 18 22-39 136-153 (177)
35 PF00831 Ribosomal_L29: Riboso 33.6 46 0.001 18.7 2.2 27 19-45 9-35 (58)
36 PF03962 Mnd1: Mnd1 family; I 33.4 1E+02 0.0023 21.1 4.3 29 10-38 103-131 (188)
37 COG0255 RpmC Ribosomal protein 32.1 61 0.0013 19.3 2.6 31 19-49 13-43 (69)
38 PF11652 DUF3259: Protein of u 31.9 73 0.0016 20.0 3.0 22 19-40 5-26 (84)
39 KOG4677|consensus 30.3 94 0.002 25.3 4.1 33 4-36 307-342 (554)
40 PF15082 DUF4549: Domain of un 30.0 58 0.0013 22.3 2.5 24 11-36 10-33 (144)
41 PF10737 GerPC: Spore germinat 28.7 65 0.0014 22.5 2.7 21 20-40 2-22 (176)
42 PF11544 Spc42p: Spindle pole 27.2 1.1E+02 0.0023 18.9 3.2 23 16-38 4-26 (76)
43 PRK13729 conjugal transfer pil 26.9 3E+02 0.0064 22.2 6.3 36 4-39 81-119 (475)
44 PF00170 bZIP_1: bZIP transcri 26.9 1.2E+02 0.0027 16.8 5.3 13 24-36 33-45 (64)
45 PRK13922 rod shape-determining 26.9 1.7E+02 0.0036 20.6 4.6 24 13-36 72-95 (276)
46 PTZ00361 26 proteosome regulat 26.5 1.5E+02 0.0033 23.0 4.6 31 8-38 72-102 (438)
47 KOG4571|consensus 25.9 86 0.0019 23.7 3.1 22 17-38 262-283 (294)
48 PF10224 DUF2205: Predicted co 25.9 1.7E+02 0.0036 17.9 6.2 38 12-54 18-55 (80)
49 PF12097 DUF3573: Protein of u 25.7 1E+02 0.0023 24.1 3.5 19 21-39 46-64 (383)
50 PRK00461 rpmC 50S ribosomal pr 25.6 97 0.0021 19.2 2.8 23 19-41 10-32 (87)
51 PF15372 DUF4600: Domain of un 24.6 1.4E+02 0.0029 20.0 3.5 26 15-40 13-38 (129)
52 PF07710 P53_tetramer: P53 tet 24.6 18 0.00039 19.9 -0.5 12 55-66 16-27 (42)
53 KOG4807|consensus 23.7 85 0.0018 25.4 2.8 33 25-63 520-552 (593)
54 COG1422 Predicted membrane pro 23.7 2.5E+02 0.0054 20.2 4.9 43 12-54 67-109 (201)
55 PF08286 Spc24: Spc24 subunit 23.5 27 0.00058 22.0 0.0 34 7-40 3-36 (118)
56 PRK14127 cell division protein 23.3 2.2E+02 0.0047 18.4 4.5 20 17-36 44-63 (109)
57 TIGR00984 3a0801s03tim44 mitoc 23.2 1.1E+02 0.0025 23.7 3.3 25 14-38 5-29 (378)
58 PF03195 DUF260: Protein of un 23.1 96 0.0021 19.5 2.5 19 20-38 81-99 (101)
59 PF04728 LPP: Lipoprotein leuc 23.0 1.7E+02 0.0036 17.0 3.7 21 20-40 20-40 (56)
60 COG4842 Uncharacterized protei 22.8 1.9E+02 0.0041 17.6 4.6 27 12-38 16-42 (97)
61 PRK03830 small acid-soluble sp 22.7 1.9E+02 0.0042 17.6 3.9 26 10-35 39-64 (73)
62 TIGR03090 SASP_tlp small, acid 22.2 2E+02 0.0042 17.5 3.9 25 10-34 40-64 (70)
63 PF09304 Cortex-I_coil: Cortex 22.1 1E+02 0.0022 20.1 2.5 22 18-39 10-31 (107)
64 TIGR00219 mreC rod shape-deter 22.0 2.2E+02 0.0047 20.7 4.5 18 17-34 73-90 (283)
65 cd04766 HTH_HspR Helix-Turn-He 21.6 1.3E+02 0.0028 17.7 2.8 17 22-38 70-86 (91)
66 PF11853 DUF3373: Protein of u 21.5 96 0.0021 24.9 2.7 15 25-39 32-46 (489)
67 PF13815 Dzip-like_N: Iguana/D 21.4 2.2E+02 0.0048 17.8 5.0 14 22-35 78-91 (118)
68 PF14942 Muted: Organelle biog 21.2 2.6E+02 0.0057 18.6 5.4 48 18-65 94-143 (145)
69 PF11853 DUF3373: Protein of u 20.8 1E+02 0.0022 24.8 2.7 25 14-38 28-52 (489)
70 KOG3119|consensus 20.7 2E+02 0.0043 20.8 4.0 31 12-42 223-254 (269)
No 1
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=99.93 E-value=4.2e-27 Score=167.01 Aligned_cols=58 Identities=55% Similarity=0.866 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHcccchhhhhccC
Q psy1232 9 EKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKP 66 (67)
Q Consensus 9 E~eR~~~~eksk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH~eNvr~G~dKykTLr~i 66 (67)
|++|++|++||++||+||++|++||+++||++|+|++|+||++||++|+|||+|||+|
T Consensus 174 EeeR~t~~EKnk~lq~QL~~L~~EL~~~kde~k~T~~D~~h~en~~~g~~ky~tl~~i 231 (246)
T PF00769_consen 174 EEERVTYAEKNKRLQEQLKELKSELEQLKDEEKQTQLDIIHAENVRAGRDKYKTLRQI 231 (246)
T ss_dssp GGC---HHHH-HHHHHHHHHHHHHHHTTB-CCG--HHHHHHHHHHHTT--HHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHHHhchhHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987
No 2
>KOG3529|consensus
Probab=99.43 E-value=3.3e-14 Score=111.95 Aligned_cols=64 Identities=42% Similarity=0.580 Sum_probs=61.2
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHcccchhhhhccC
Q psy1232 3 RLSLEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKP 66 (67)
Q Consensus 3 ~ls~eiE~eR~~~~eksk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH~eNvr~G~dKykTLr~i 66 (67)
....++|++|++|.+||.++++||.+|+.+++.+|++++++.+|++|++|+++|+|||+|||+|
T Consensus 518 ~~~~~~eker~te~ek~~~~k~qL~aL~~e~~~~k~~~~~t~~d~~h~~n~r~G~dk~~tLr~i 581 (596)
T KOG3529|consen 518 LGLPRLEKERVTEAEKNERVRDQLDALRSELAPAKDEERPTAHDILHAENVRAGRDKYKTLRQS 581 (596)
T ss_pred ccccchhHHHHHHHhhhHHHHHHHHhcccccccCCCcccccccchhhhhhcccCCCcceehhhh
Confidence 3457899999999999999999999999999999999999999999999999999999999987
No 3
>KOG3436|consensus
Probab=84.39 E-value=1.2 Score=29.69 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=20.1
Q ss_pred HhHHHHHHHHHHHHHHHHhhhhh
Q psy1232 18 KSKHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 18 ksk~Lq~qL~~L~~El~~lk~e~ 40 (67)
+-+.|+.||.+|+.||++||+..
T Consensus 13 ~ke~L~~ql~dLK~ELa~LRv~K 35 (123)
T KOG3436|consen 13 SKEQLLKQLDDLKVELAQLRVAK 35 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33799999999999999999864
No 4
>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins. Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.
Probab=68.29 E-value=3.6 Score=28.41 Aligned_cols=26 Identities=31% Similarity=0.620 Sum_probs=5.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy1232 12 RVEYLEKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 12 R~~~~eksk~Lq~qL~~L~~El~~lk~ 38 (67)
|..-.+..++|.+.|.+|+.|| .+++
T Consensus 26 KE~L~~~~QRLkDE~RDLKqEl-~V~e 51 (166)
T PF04880_consen 26 KENLREEVQRLKDELRDLKQEL-IVQE 51 (166)
T ss_dssp HHHHHHCH-------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 5555678889999999999998 4443
No 5
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=67.18 E-value=20 Score=22.46 Aligned_cols=60 Identities=15% Similarity=0.360 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh-hhhhhhHHHhHHHHHHcccchhhhhccC
Q psy1232 6 LEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKV-GEKQSELDLLHEEQVRLGENKYSTLRKP 66 (67)
Q Consensus 6 ~eiE~eR~~~~eksk~Lq~qL~~L~~El~~lk~-e~k~t~~D~lH~eNvr~G~dKykTLr~i 66 (67)
..++.+|..--.+|..+-.++.+|..+...-+. ++....++.++. +++.-+.++.+++.|
T Consensus 20 ~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~-~lk~~r~~~~v~k~v 80 (106)
T PF05837_consen 20 SDVEKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEK-ELKKSRQRWRVMKNV 80 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 456666777777777777777777776665544 333445555554 455566777777654
No 6
>smart00338 BRLZ basic region leucin zipper.
Probab=63.10 E-value=25 Score=19.74 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=14.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhh
Q psy1232 15 YLEKSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 15 ~~eksk~Lq~qL~~L~~El~~lk~e 39 (67)
....|..|+.++..|..|+..++..
T Consensus 38 L~~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 38 LEAENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666543
No 7
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=62.54 E-value=16 Score=21.48 Aligned_cols=38 Identities=34% Similarity=0.464 Sum_probs=28.2
Q ss_pred HHHHHHHHhHHHHH-----HHHHHHHHHHHhhhhhhhhhHHHh
Q psy1232 11 ERVEYLEKSKHLQD-----QLRDLRTEIEVLKVGEKQSELDLL 48 (67)
Q Consensus 11 eR~~~~eksk~Lq~-----qL~~L~~El~~lk~e~k~t~~D~l 48 (67)
.|+.++++|-.+-. -|..|-.||+.|+...+.-.++.+
T Consensus 3 ~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~dL~~kL~ 45 (60)
T PF14916_consen 3 QQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNKDLTFKLI 45 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeee
Confidence 46777888765433 389999999999999887655544
No 8
>PF07061 Swi5: Swi5; InterPro: IPR010760 This entry represents Swi5 and is involved in meiotic DNA repair synthesis and meiotic joint molecule formation []. It is known to interact with Swi2, Rhp51 and Swi6 [].
Probab=61.45 E-value=18 Score=22.18 Aligned_cols=33 Identities=21% Similarity=0.283 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHH
Q psy1232 21 HLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQV 53 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk~e~k~t~~D~lH~eNv 53 (67)
.+..++.++.+++..--.......++.||..|-
T Consensus 18 ~l~~~i~~~~~~l~~~~~~~v~~hI~lLheYNe 50 (83)
T PF07061_consen 18 QLEKEISELEAELIEDPEKIVKRHIKLLHEYNE 50 (83)
T ss_pred HHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhH
Confidence 555566666665433333344578999999984
No 9
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=57.89 E-value=14 Score=20.67 Aligned_cols=20 Identities=30% Similarity=0.647 Sum_probs=14.8
Q ss_pred HhHHHHHHHHHHHHHHHHhh
Q psy1232 18 KSKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 18 ksk~Lq~qL~~L~~El~~lk 37 (67)
+.++++.+++.++.|++.+|
T Consensus 49 ~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 49 RIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 45677778888888887764
No 10
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=51.70 E-value=34 Score=20.98 Aligned_cols=26 Identities=23% Similarity=0.397 Sum_probs=21.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy1232 14 EYLEKSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 14 ~~~eksk~Lq~qL~~L~~El~~lk~e 39 (67)
+..+.|.+|+..|+.|..||..++.+
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq~~~~~ 29 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQQNKRE 29 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34577899999999999999888776
No 11
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=51.16 E-value=40 Score=24.36 Aligned_cols=20 Identities=25% Similarity=0.528 Sum_probs=9.2
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVL 36 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~l 36 (67)
.+|..|..+|..+..++..+
T Consensus 93 ~Rn~ELE~elr~~~~~~~~L 112 (248)
T PF08172_consen 93 QRNAELEEELRKQQQTISSL 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444
No 12
>PF00816 Histone_HNS: H-NS histone family Partial NMR structure.; InterPro: IPR001801 The histone-like nucleoid-structuring (H-NS) protein belongs to a family of bacterial proteins that play a role in the formation of nucleoid structure and affect gene expression under certain conditions [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2LEV_A 1HNS_A 1LR1_B 1HNR_A 1NI8_A 1OV9_A 2JR1_A 3NR7_A 2L93_A 2L92_A.
Probab=45.70 E-value=65 Score=19.22 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHcc
Q psy1232 21 HLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLG 56 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk~e~k~t~~D~lH~eNvr~G 56 (67)
.|..++.+|..+++..+..++...+..|..--...|
T Consensus 2 eL~~~~~~l~~~~~~~~~~e~~~~~~~i~~~~~~~G 37 (93)
T PF00816_consen 2 ELEAQIKELEKEIEERRKQEREEAIAEIRELMAEYG 37 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 567777788888888877777766666655544444
No 13
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=45.46 E-value=52 Score=19.21 Aligned_cols=21 Identities=24% Similarity=0.642 Sum_probs=14.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk 37 (67)
.+|..|..++..|+.+++.+|
T Consensus 39 ~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 39 KRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 467777777777777777665
No 14
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=42.48 E-value=61 Score=25.98 Aligned_cols=26 Identities=15% Similarity=0.432 Sum_probs=14.2
Q ss_pred HHHHHHHHH-HhHHHHHHHHHHHHHHH
Q psy1232 9 EKERVEYLE-KSKHLQDQLRDLRTEIE 34 (67)
Q Consensus 9 E~eR~~~~e-ksk~Lq~qL~~L~~El~ 34 (67)
+...++..+ |...|+.||..|++|++
T Consensus 67 nqSALteqQ~kasELEKqLaaLrqElq 93 (475)
T PRK13729 67 RQHATTEMQVTAAQMQKQYEEIRRELD 93 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444 55666666666665554
No 15
>PRK10722 hypothetical protein; Provisional
Probab=42.29 E-value=65 Score=23.82 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=20.5
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
+...+||.+|..+...|+.|.|=|++
T Consensus 183 qq~~~Lq~~L~~t~rKLEnLTdIERq 208 (247)
T PRK10722 183 QQQQRLQYQLELTTRKLENLTDIERQ 208 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888887765
No 16
>PF09432 THP2: Tho complex subunit THP2; InterPro: IPR018557 The THO complex plays a role in coupling transcription elongation to mRNA export. It is composed of subunits THP2, HPR1, THO2 and MFT1 [].
Probab=41.70 E-value=83 Score=21.27 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHhhhh
Q psy1232 6 LEIEKERVEYLEKSKH-LQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 6 ~eiE~eR~~~~eksk~-Lq~qL~~L~~El~~lk~e 39 (67)
-+|--+|..|.-.|++ ||+.|++|..|+..-|.+
T Consensus 66 D~IKm~RAkY~lENky~L~~tL~~LtkEVn~Wr~e 100 (132)
T PF09432_consen 66 DDIKMERAKYSLENKYSLQDTLNQLTKEVNYWRKE 100 (132)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3677789998877765 799999999998776543
No 17
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=41.11 E-value=90 Score=19.57 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=15.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhh
Q psy1232 16 LEKSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 16 ~eksk~Lq~qL~~L~~El~~lk~e 39 (67)
-..+..++.+-..|+.||+.++++
T Consensus 40 ~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 40 QQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCc
Confidence 345666666667777777776653
No 18
>KOG3433|consensus
Probab=40.66 E-value=1e+02 Score=22.14 Aligned_cols=41 Identities=27% Similarity=0.289 Sum_probs=27.2
Q ss_pred HHHH-HHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHhHH
Q psy1232 10 KERV-EYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHE 50 (67)
Q Consensus 10 ~eR~-~~~eksk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH~ 50 (67)
++|. ++.-+.-+|+++|+.++.+++..+.-+-+...=..|+
T Consensus 115 Eer~~el~kklnslkk~~e~lr~el~k~~e~dpqv~~k~~~~ 156 (203)
T KOG3433|consen 115 EERTDELTKKLNSLKKILESLRWELAKIQETDPQVFEKKVHL 156 (203)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 3455 4556777888888888888888776655544333343
No 19
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=40.23 E-value=42 Score=18.75 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhHHHhH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSELDLLH 49 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH 49 (67)
...|+.+|.+|+.|+-.+|-.....+++.-|
T Consensus 8 ~~eL~~~l~~l~~elf~Lr~q~~~~~~~~~~ 38 (57)
T cd00427 8 DEELQEKLDELKKELFNLRFQKATGQLENPH 38 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcCcH
Confidence 3578889999999999998665544444333
No 20
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=40.07 E-value=79 Score=18.61 Aligned_cols=30 Identities=30% Similarity=0.384 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy1232 5 SLEIEKERVEYLEKSKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 5 s~eiE~eR~~~~eksk~Lq~qL~~L~~El~~lk 37 (67)
-.++++++.+ +...|..++..|...++.+.
T Consensus 63 l~~l~~~~~~---~~~~l~~q~~~l~~~l~~l~ 92 (127)
T smart00502 63 LEDLEEQKEN---KLKVLEQQLESLTQKQEKLS 92 (127)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 3444444433 67778888888877777664
No 21
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=37.10 E-value=52 Score=23.57 Aligned_cols=19 Identities=37% Similarity=0.541 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy1232 21 HLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk~e 39 (67)
.|+.||..|+.||..||-.
T Consensus 58 ~l~~ql~~lq~ev~~LrG~ 76 (263)
T PRK10803 58 QLQQQLSDNQSDIDSLRGQ 76 (263)
T ss_pred HHHHHHHHHHHHHHHHhhH
Confidence 6799999999999988863
No 22
>smart00340 HALZ homeobox associated leucin zipper.
Probab=37.01 E-value=42 Score=18.74 Aligned_cols=16 Identities=31% Similarity=0.665 Sum_probs=12.8
Q ss_pred HHHhHHHHHHHHHHHH
Q psy1232 16 LEKSKHLQDQLRDLRT 31 (67)
Q Consensus 16 ~eksk~Lq~qL~~L~~ 31 (67)
.+-|++||..|.+|++
T Consensus 18 teeNrRL~ke~~eLra 33 (44)
T smart00340 18 TEENRRLQKEVQELRA 33 (44)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3678999999988864
No 23
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=36.44 E-value=1.1e+02 Score=19.43 Aligned_cols=42 Identities=26% Similarity=0.420 Sum_probs=21.0
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhh-------hhhh-hhhHHHhHHHH
Q psy1232 11 ERVEYLEKSKHLQDQLRDLRTEIEVLK-------VGEK-QSELDLLHEEQ 52 (67)
Q Consensus 11 eR~~~~eksk~Lq~qL~~L~~El~~lk-------~e~k-~t~~D~lH~eN 52 (67)
++..|..-+..+...+...+.+|+.+| ..-+ ...+|.|...-
T Consensus 75 e~e~Y~~~~~~i~~~i~~~k~~ie~lk~~L~~ak~~r~~k~eyd~La~~I 124 (139)
T PF05615_consen 75 ERENYEQLNEEIEQEIEQAKKEIEELKEELEEAKRVRQNKEEYDALAKKI 124 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554444 3221 23666665543
No 24
>PF14282 FlxA: FlxA-like protein
Probab=35.43 E-value=97 Score=19.34 Aligned_cols=21 Identities=29% Similarity=0.452 Sum_probs=10.9
Q ss_pred HhHHHHHHHHHHHHHHHHhhh
Q psy1232 18 KSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 18 ksk~Lq~qL~~L~~El~~lk~ 38 (67)
+-+-|+.||..|...|..+..
T Consensus 52 q~q~Lq~QI~~LqaQI~qlq~ 72 (106)
T PF14282_consen 52 QIQLLQAQIQQLQAQIAQLQS 72 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555554433
No 25
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=35.31 E-value=54 Score=18.83 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSELD 46 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~D 46 (67)
...|+..|.+|+.||-.+|......+.+
T Consensus 11 ~~eL~~~l~~lkkeL~~lR~~~~~~~~~ 38 (66)
T PRK00306 11 VEELNEKLLELKKELFNLRFQKATGQLE 38 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578889999999999998655433333
No 26
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=35.18 E-value=61 Score=18.12 Aligned_cols=14 Identities=43% Similarity=0.705 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHhh
Q psy1232 24 DQLRDLRTEIEVLK 37 (67)
Q Consensus 24 ~qL~~L~~El~~lk 37 (67)
.++..|+++++.++
T Consensus 24 ~ei~~l~~~i~~l~ 37 (80)
T PF04977_consen 24 QEIAELQKEIEELK 37 (80)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 27
>PRK10884 SH3 domain-containing protein; Provisional
Probab=35.16 E-value=1.5e+02 Score=20.76 Aligned_cols=19 Identities=16% Similarity=0.345 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHHHHHHHHh
Q psy1232 18 KSKHLQDQLRDLRTEIEVL 36 (67)
Q Consensus 18 ksk~Lq~qL~~L~~El~~l 36 (67)
.|..|+.+|..++++++.+
T Consensus 140 ~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 140 ENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444454444444443
No 28
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=34.53 E-value=1.4e+02 Score=23.60 Aligned_cols=29 Identities=28% Similarity=0.401 Sum_probs=21.6
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy1232 16 LEKSKHLQDQLRDLRTEIEVLKVGEKQSE 44 (67)
Q Consensus 16 ~eksk~Lq~qL~~L~~El~~lk~e~k~t~ 44 (67)
..+-..|+.+|+.+.++|..+...=..+.
T Consensus 58 ~~~~~kL~~~lk~~e~~i~~~~~ql~~s~ 86 (420)
T COG4942 58 QDQRAKLEKQLKSLETEIASLEAQLIETA 86 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999988877666553
No 29
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=34.31 E-value=1e+02 Score=25.85 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=36.3
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHhhhh--hhhhhHHHhHHHHHHcccc
Q psy1232 13 VEYLEKSKHLQDQLRDLRTEIEVLKVG--EKQSELDLLHEEQVRLGEN 58 (67)
Q Consensus 13 ~~~~eksk~Lq~qL~~L~~El~~lk~e--~k~t~~D~lH~eNvr~G~d 58 (67)
.+.+.|-..+..++.+|.+||..+|.. +.+..+|+++..|...+.+
T Consensus 23 ~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~ 70 (717)
T PF09730_consen 23 QESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKE 70 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888999999999999998873 4567899999988877654
No 30
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=34.06 E-value=58 Score=19.10 Aligned_cols=30 Identities=10% Similarity=0.120 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhh-HHHhH
Q psy1232 20 KHLQDQLRDLRTEIEVLKVGEKQSE-LDLLH 49 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~e~k~t~-~D~lH 49 (67)
..|...|.+|+.|+-.||..-...+ ++..|
T Consensus 15 ~eL~~~l~elk~eLf~LR~q~~~~~~l~n~~ 45 (69)
T PRK14549 15 EEREEKLEELKLELLKERAQAAMGGAPENPG 45 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcCccccH
Confidence 5788899999999999987554444 44433
No 31
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=34.06 E-value=99 Score=22.33 Aligned_cols=29 Identities=31% Similarity=0.467 Sum_probs=19.5
Q ss_pred HHHHHHH-hHHHHHHHHHHHHHHHHhhhhh
Q psy1232 12 RVEYLEK-SKHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 12 R~~~~ek-sk~Lq~qL~~L~~El~~lk~e~ 40 (67)
|...+|. ...++.++..|+.|++.||-++
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN 123 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVESLRADN 123 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444432 3456677888889988888775
No 32
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=33.83 E-value=62 Score=17.98 Aligned_cols=28 Identities=21% Similarity=0.402 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSELD 46 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~D 46 (67)
...|+..|.+|+.||-.+|-.-...+.+
T Consensus 7 ~~EL~~~l~~lr~eLf~Lr~~~~~~~~~ 34 (55)
T TIGR00012 7 KEELAKKLDELKKELFELRFQKATGQLA 34 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 3578889999999999988654443333
No 33
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=33.72 E-value=71 Score=22.89 Aligned_cols=34 Identities=26% Similarity=0.310 Sum_probs=17.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhhh-hhhhhHHHhH
Q psy1232 16 LEKSKHLQDQLRDLRTEIEVLKVG-EKQSELDLLH 49 (67)
Q Consensus 16 ~eksk~Lq~qL~~L~~El~~lk~e-~k~t~~D~lH 49 (67)
.+.-.++.+.+..|+.+|+.+|.+ --...+..+|
T Consensus 80 ~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~l~ 114 (230)
T PF10146_consen 80 QEKIQRLYEEYKPLKDEINELRKEYLGLEPLPSLE 114 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccc
Confidence 334445555555555555555555 3444444444
No 34
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=33.70 E-value=1.4e+02 Score=19.93 Aligned_cols=18 Identities=44% Similarity=0.665 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy1232 22 LQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 22 Lq~qL~~L~~El~~lk~e 39 (67)
+...+..|+++|+++|-+
T Consensus 136 i~~ei~~lr~~iE~~K~~ 153 (177)
T PF07798_consen 136 IDTEIANLRTEIESLKWD 153 (177)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455566666655544
No 35
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=33.60 E-value=46 Score=18.68 Aligned_cols=27 Identities=26% Similarity=0.493 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSEL 45 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~ 45 (67)
...|+++|.+|+.|+-.+|-.-...++
T Consensus 9 ~~eL~~~l~elk~eL~~Lr~q~~~~~l 35 (58)
T PF00831_consen 9 DEELQEKLEELKKELFNLRFQKATGQL 35 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 357888999999999888876554443
No 36
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=33.38 E-value=1e+02 Score=21.12 Aligned_cols=29 Identities=34% Similarity=0.574 Sum_probs=23.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy1232 10 KERVEYLEKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 10 ~eR~~~~eksk~Lq~qL~~L~~El~~lk~ 38 (67)
.+|...++.-..|+.++..|+.+|+....
T Consensus 103 ~eR~~~l~~l~~l~~~~~~l~~el~~~~~ 131 (188)
T PF03962_consen 103 EEREELLEELEELKKELKELKKELEKYSE 131 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45777788888899999999999885543
No 37
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=32.13 E-value=61 Score=19.34 Aligned_cols=31 Identities=26% Similarity=0.445 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhHHHhH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSELDLLH 49 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH 49 (67)
.+.|..+|.+|+.|+-.+|-.....+++.-|
T Consensus 13 ~eeL~~~l~eLK~ELf~LR~q~a~g~l~n~~ 43 (69)
T COG0255 13 VEELEEELRELKKELFNLRFQLATGQLENPH 43 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCcH
Confidence 4578889999999999998876655554433
No 38
>PF11652 DUF3259: Protein of unknown function (DUF3259); InterPro: IPR024280 This entry describes a eukaryotic protein family of unknown function designated FAM167.
Probab=31.89 E-value=73 Score=20.02 Aligned_cols=22 Identities=45% Similarity=0.593 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhh
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~ 40 (67)
..+|..||-.|+++|..+|++.
T Consensus 5 D~qLArqLmrlR~~i~~lkveq 26 (84)
T PF11652_consen 5 DQQLARQLMRLRSEIHRLKVEQ 26 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999999873
No 39
>KOG4677|consensus
Probab=30.26 E-value=94 Score=25.34 Aligned_cols=33 Identities=42% Similarity=0.478 Sum_probs=27.8
Q ss_pred hhHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHh
Q psy1232 4 LSLEIEKERVE---YLEKSKHLQDQLRDLRTEIEVL 36 (67)
Q Consensus 4 ls~eiE~eR~~---~~eksk~Lq~qL~~L~~El~~l 36 (67)
+++|.|+-|++ -.+-+.++|.|.-.|+++|..+
T Consensus 307 s~~E~ee~rve~~~s~ed~~~~q~q~~~Lrs~~~d~ 342 (554)
T KOG4677|consen 307 SRKEFEETRVELPFSAEDSAHIQDQYTLLRSQIIDI 342 (554)
T ss_pred HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999987 3477899999999999998754
No 40
>PF15082 DUF4549: Domain of unknown function (DUF4549)
Probab=30.01 E-value=58 Score=22.31 Aligned_cols=24 Identities=50% Similarity=0.657 Sum_probs=16.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy1232 11 ERVEYLEKSKHLQDQLRDLRTEIEVL 36 (67)
Q Consensus 11 eR~~~~eksk~Lq~qL~~L~~El~~l 36 (67)
||+-.+|+ .|..+|.+|++||+.-
T Consensus 10 erv~~lEk--eLa~~L~eLK~eiEE~ 33 (144)
T PF15082_consen 10 ERVQQLEK--ELAKELYELKNEIEEN 33 (144)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHh
Confidence 34444554 5788999999999763
No 41
>PF10737 GerPC: Spore germination protein GerPC; InterPro: IPR019673 GerPC is required for the formation of functionally normal spores. The gerP locus encodes a number of proteins which are thought to be involved in the establishment of normal spore coat structure and/or permeability, which allows the access of germinants to their receptor [].
Probab=28.65 E-value=65 Score=22.45 Aligned_cols=21 Identities=33% Similarity=0.575 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy1232 20 KHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~e~ 40 (67)
.+|..+|++|+.||+.||..-
T Consensus 2 ~~LE~~~~~l~~e~~~Lk~~p 22 (176)
T PF10737_consen 2 QRLEQRLQELQQELEELKQQP 22 (176)
T ss_pred hHHHHHHHHHHHHHHHHHhCC
Confidence 368889999999999997653
No 42
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=27.18 E-value=1.1e+02 Score=18.86 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=16.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHhhh
Q psy1232 16 LEKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 16 ~eksk~Lq~qL~~L~~El~~lk~ 38 (67)
++.|+.|...|..-..||+.+..
T Consensus 4 i~qNk~L~~kL~~K~eEI~rLn~ 26 (76)
T PF11544_consen 4 IKQNKELKKKLNDKQEEIDRLNI 26 (76)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888766543
No 43
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=26.94 E-value=3e+02 Score=22.20 Aligned_cols=36 Identities=17% Similarity=0.145 Sum_probs=23.5
Q ss_pred hhHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHhhhh
Q psy1232 4 LSLEIEKERVEYL---EKSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 4 ls~eiE~eR~~~~---eksk~Lq~qL~~L~~El~~lk~e 39 (67)
|..+++..|.+.- .....++.+|++|.+|+..|+..
T Consensus 81 LEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Q 119 (475)
T PRK13729 81 MQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQ 119 (475)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4445555554433 45556788888888888888665
No 44
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=26.92 E-value=1.2e+02 Score=16.80 Aligned_cols=13 Identities=31% Similarity=0.552 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHh
Q psy1232 24 DQLRDLRTEIEVL 36 (67)
Q Consensus 24 ~qL~~L~~El~~l 36 (67)
.++..|.++...|
T Consensus 33 ~~~~~L~~en~~L 45 (64)
T PF00170_consen 33 EKVEELESENEEL 45 (64)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 45
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=26.87 E-value=1.7e+02 Score=20.57 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=15.7
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHh
Q psy1232 13 VEYLEKSKHLQDQLRDLRTEIEVL 36 (67)
Q Consensus 13 ~~~~eksk~Lq~qL~~L~~El~~l 36 (67)
.+..+.|+.|+.++..|+.++..+
T Consensus 72 ~~l~~en~~L~~e~~~l~~~~~~~ 95 (276)
T PRK13922 72 FDLREENEELKKELLELESRLQEL 95 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777777777777766644
No 46
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=26.47 E-value=1.5e+02 Score=23.03 Aligned_cols=31 Identities=19% Similarity=0.205 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy1232 8 IEKERVEYLEKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 8 iE~eR~~~~eksk~Lq~qL~~L~~El~~lk~ 38 (67)
+|++-+...++.+.++.++..++.+|+.++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (438)
T PTZ00361 72 LEEEFITNQEAQKPAQEKNEAELKKVDDLRG 102 (438)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhC
Confidence 3444444445556778888888888887764
No 47
>KOG4571|consensus
Probab=25.91 E-value=86 Score=23.73 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=18.9
Q ss_pred HHhHHHHHHHHHHHHHHHHhhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk~ 38 (67)
-+|..|.+|+..|-.||.-+|+
T Consensus 262 ~rN~~LK~qa~~lerEI~ylKq 283 (294)
T KOG4571|consen 262 KRNEELKDQASELEREIRYLKQ 283 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999988875
No 48
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=25.90 E-value=1.7e+02 Score=17.94 Aligned_cols=38 Identities=26% Similarity=0.321 Sum_probs=23.2
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHH
Q psy1232 12 RVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVR 54 (67)
Q Consensus 12 R~~~~eksk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH~eNvr 54 (67)
|.+-...-..||+.|..|-..++..|.+ +|.|-.+|--
T Consensus 18 k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E-----~~kL~~EN~~ 55 (80)
T PF10224_consen 18 KEELIQEILELQDSLEALSDRVEEVKEE-----NEKLESENEY 55 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH
Confidence 4444456667777777777777666554 5555555543
No 49
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=25.70 E-value=1e+02 Score=24.12 Aligned_cols=19 Identities=37% Similarity=0.543 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy1232 21 HLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk~e 39 (67)
.||.|++.|+.||..++..
T Consensus 46 ~Lq~QI~~Lq~ei~~l~~~ 64 (383)
T PF12097_consen 46 ELQKQIQQLQAEINQLEEQ 64 (383)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6899999999999998766
No 50
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=25.65 E-value=97 Score=19.20 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEK 41 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k 41 (67)
...|+..|.+|+.||-.+|-.-.
T Consensus 10 ~eEL~e~L~elkkELf~LR~q~a 32 (87)
T PRK00461 10 VEELEKLVIELKAELFTLRFKNA 32 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888888888885443
No 51
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=24.62 E-value=1.4e+02 Score=20.02 Aligned_cols=26 Identities=31% Similarity=0.382 Sum_probs=22.7
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy1232 15 YLEKSKHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 15 ~~eksk~Lq~qL~~L~~El~~lk~e~ 40 (67)
-+|.|.+|..|+.-|+..|+.++...
T Consensus 13 Q~E~N~QLekqi~~l~~kiek~r~n~ 38 (129)
T PF15372_consen 13 QLELNDQLEKQIIILREKIEKIRGNP 38 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46899999999999999999987743
No 52
>PF07710 P53_tetramer: P53 tetramerisation motif; InterPro: IPR010991 The p53 protein is a tetrameric transcription factor that plays a central role in the prevention of neoplastic transformation []. Oligomerization appears to be essential for the tumour suppressing activity of p53. p53 can be divided into different functional domains: an N-terminal transactivation domain, a proline-rich domain, a DNA-binding domain (IPR008967 from INTERPRO), a tetramerisation domain and a C-terminal regulatory region. The tetramerisation domain of human p53 extends from residues 325 to 356, and has a 4-helical bundle fold. The tetramerisation domain is essential for DNA binding, protein-protein interactions, post-translational modifications, and p53 degradation [].; GO: 0051262 protein tetramerization; PDB: 3Q06_B 1SAL_B 1OLH_B 1AIE_A 1PES_D 1SAK_D 1SAE_B 2J11_D 1PET_A 1OLG_A ....
Probab=24.60 E-value=18 Score=19.88 Aligned_cols=12 Identities=33% Similarity=0.642 Sum_probs=9.9
Q ss_pred cccchhhhhccC
Q psy1232 55 LGENKYSTLRKP 66 (67)
Q Consensus 55 ~G~dKykTLr~i 66 (67)
.||..|..|++|
T Consensus 16 rGRe~yE~l~ki 27 (42)
T PF07710_consen 16 RGRERYEMLKKI 27 (42)
T ss_dssp ESHHHHHHHHHH
T ss_pred ecHHHHHHHHHH
Confidence 589999988875
No 53
>KOG4807|consensus
Probab=23.72 E-value=85 Score=25.43 Aligned_cols=33 Identities=24% Similarity=0.301 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhHHHhHHHHHHcccchhhhh
Q psy1232 25 QLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTL 63 (67)
Q Consensus 25 qL~~L~~El~~lk~e~k~t~~D~lH~eNvr~G~dKykTL 63 (67)
.++-|+.||.+|||+=....-|.-++ .|||+.+
T Consensus 520 EiQYLKqEissLkDELQtalrDKkya------SdKYkDi 552 (593)
T KOG4807|consen 520 EIQYLKQEISSLKDELQTALRDKKYA------SDKYKDI 552 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcc------ccchhHH
Confidence 57789999999999987766676554 3666653
No 54
>COG1422 Predicted membrane protein [Function unknown]
Probab=23.70 E-value=2.5e+02 Score=20.15 Aligned_cols=43 Identities=23% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHH
Q psy1232 12 RVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVR 54 (67)
Q Consensus 12 R~~~~eksk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH~eNvr 54 (67)
...-.||=+++|+..++++.|...++...-.-.+-+|-.+...
T Consensus 67 ~liD~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~qme 109 (201)
T COG1422 67 LLIDQEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQME 109 (201)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445678889999999999999888775444444444444433
No 55
>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation [].; PDB: 2VE7_D 2FV4_B 2FTX_B.
Probab=23.49 E-value=27 Score=22.04 Aligned_cols=34 Identities=26% Similarity=0.451 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy1232 7 EIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 7 eiE~eR~~~~eksk~Lq~qL~~L~~El~~lk~e~ 40 (67)
++|.+++..+.....|...|..|+.+++.++.+.
T Consensus 3 ~Ld~~k~~laK~~~~LE~~l~~l~~el~~L~~~l 36 (118)
T PF08286_consen 3 ELDNEKFRLAKELSDLESELESLQSELEELKEEL 36 (118)
T ss_dssp ----------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666677777777777777766543
No 56
>PRK14127 cell division protein GpsB; Provisional
Probab=23.26 E-value=2.2e+02 Score=18.35 Aligned_cols=20 Identities=20% Similarity=0.410 Sum_probs=9.6
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVL 36 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~l 36 (67)
..+..|+.++..|+.+|+.+
T Consensus 44 ~e~~~Lk~e~~~l~~~l~e~ 63 (109)
T PRK14127 44 KEIEELQQENARLKAQVDEL 63 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555554443
No 57
>TIGR00984 3a0801s03tim44 mitochondrial import inner membrane, translocase subunit. translocase (Tom) import receptor, five proteins of the Tom channel complex, five proteins of the inner membrane translocase (Tim) and three "motor" proteins. This family is specific for the Tim proteins.
Probab=23.23 E-value=1.1e+02 Score=23.65 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=20.5
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhh
Q psy1232 14 EYLEKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 14 ~~~eksk~Lq~qL~~L~~El~~lk~ 38 (67)
+.+.||+.||+-++.|+.+-..+-+
T Consensus 5 ~E~~kskE~~enik~l~~~~~~~~e 29 (378)
T TIGR00984 5 DELQKSQELQESIKQLQDRSGKLNE 29 (378)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhhh
Confidence 4688999999999999988766543
No 58
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=23.11 E-value=96 Score=19.54 Aligned_cols=19 Identities=32% Similarity=0.648 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q psy1232 20 KHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~ 38 (67)
-.|+.||..++.||..++.
T Consensus 81 ~~L~~ql~~~~~el~~~~~ 99 (101)
T PF03195_consen 81 SQLQQQLQQLQAELALVRA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 4688899999999887753
No 59
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=23.04 E-value=1.7e+02 Score=16.97 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy1232 20 KHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~e~ 40 (67)
.+|+.....|+.++..++.+-
T Consensus 20 dqLs~dv~~lr~~v~~ak~EA 40 (56)
T PF04728_consen 20 DQLSSDVNALRADVQAAKEEA 40 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355555666666666665543
No 60
>COG4842 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.80 E-value=1.9e+02 Score=17.57 Aligned_cols=27 Identities=33% Similarity=0.457 Sum_probs=22.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy1232 12 RVEYLEKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 12 R~~~~eksk~Lq~qL~~L~~El~~lk~ 38 (67)
=-.|-..+.+++..|.+|.+++..+..
T Consensus 16 A~~~~~~~~~i~~~l~~l~s~~~~l~~ 42 (97)
T COG4842 16 AKDYAGSSGEIQALLQDLASEIAKLQS 42 (97)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHh
Confidence 345678899999999999999988865
No 61
>PRK03830 small acid-soluble spore protein Tlp; Provisional
Probab=22.74 E-value=1.9e+02 Score=17.64 Aligned_cols=26 Identities=27% Similarity=0.436 Sum_probs=20.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy1232 10 KERVEYLEKSKHLQDQLRDLRTEIEV 35 (67)
Q Consensus 10 ~eR~~~~eksk~Lq~qL~~L~~El~~ 35 (67)
+++.+.-+||.+=..-|..+++||..
T Consensus 39 ~~~~~i~eKN~RR~esi~~~R~EIkD 64 (73)
T PRK03830 39 KEKQAIEEKNERREESIDGMRSEIKD 64 (73)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 45666778999999999999988843
No 62
>TIGR03090 SASP_tlp small, acid-soluble spore protein tlp. This protein family is restricted to a subset of endospore-forming bacteria such as Bacillus subtilis, all of which are in the Firmicutes (low-GC Gram-positive) lineage. Although previously designated tlp (thioredoxin-like protein), the B. subtilis protein was shown to be a minor small acid-soluble spore protein SASP, unique to spores. The motif E[VIL]XDE near the C-terminus probably represents at a germination protease cleavage site.
Probab=22.20 E-value=2e+02 Score=17.48 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=20.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q psy1232 10 KERVEYLEKSKHLQDQLRDLRTEIE 34 (67)
Q Consensus 10 ~eR~~~~eksk~Lq~qL~~L~~El~ 34 (67)
+++.+.-+||.+=..-|..+++||.
T Consensus 40 ~~~~~i~eKN~RR~eSi~~~r~EIk 64 (70)
T TIGR03090 40 EEKQRIEEKNERREQSIDGFRSEIK 64 (70)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4566677899999999999998874
No 63
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=22.10 E-value=1e+02 Score=20.09 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=12.4
Q ss_pred HhHHHHHHHHHHHHHHHHhhhh
Q psy1232 18 KSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 18 ksk~Lq~qL~~L~~El~~lk~e 39 (67)
..-.++.+|..|..+|++.|..
T Consensus 10 s~~el~n~La~Le~slE~~K~S 31 (107)
T PF09304_consen 10 SQNELQNRLASLERSLEDEKTS 31 (107)
T ss_dssp ----HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhh
Confidence 4446777777777777766653
No 64
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=22.04 E-value=2.2e+02 Score=20.67 Aligned_cols=18 Identities=17% Similarity=0.272 Sum_probs=8.4
Q ss_pred HHhHHHHHHHHHHHHHHH
Q psy1232 17 EKSKHLQDQLRDLRTEIE 34 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~ 34 (67)
+-|++|+.++..|..++.
T Consensus 73 ~EN~~Lr~e~~~l~~~~~ 90 (283)
T TIGR00219 73 YENYKLRQELLKKNQQLE 90 (283)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555544444433
No 65
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=21.56 E-value=1.3e+02 Score=17.69 Aligned_cols=17 Identities=35% Similarity=0.774 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy1232 22 LQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 22 Lq~qL~~L~~El~~lk~ 38 (67)
|.+|+..|+.+|+.++.
T Consensus 70 l~~~~~~l~~~l~~l~~ 86 (91)
T cd04766 70 LEEELAELRAELDELRA 86 (91)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677777777776654
No 66
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=21.52 E-value=96 Score=24.92 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHhhhh
Q psy1232 25 QLRDLRTEIEVLKVG 39 (67)
Q Consensus 25 qL~~L~~El~~lk~e 39 (67)
||.+|+.||+.|+.+
T Consensus 32 kie~L~kql~~Lk~q 46 (489)
T PF11853_consen 32 KIEALKKQLEELKAQ 46 (489)
T ss_pred HHHHHHHHHHHHHHh
Confidence 555555555555443
No 67
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=21.42 E-value=2.2e+02 Score=17.82 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q psy1232 22 LQDQLRDLRTEIEV 35 (67)
Q Consensus 22 Lq~qL~~L~~El~~ 35 (67)
|..++..|..++..
T Consensus 78 L~~~~~~l~~~~~~ 91 (118)
T PF13815_consen 78 LSSQLEQLEERLQE 91 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 33334444433333
No 68
>PF14942 Muted: Organelle biogenesis, Muted-like protein
Probab=21.24 E-value=2.6e+02 Score=18.63 Aligned_cols=48 Identities=23% Similarity=0.248 Sum_probs=35.3
Q ss_pred HhHHHHHHHHHHHHHHHHhhhh--hhhhhHHHhHHHHHHcccchhhhhcc
Q psy1232 18 KSKHLQDQLRDLRTEIEVLKVG--EKQSELDLLHEEQVRLGENKYSTLRK 65 (67)
Q Consensus 18 ksk~Lq~qL~~L~~El~~lk~e--~k~t~~D~lH~eNvr~G~dKykTLr~ 65 (67)
++.+|+.--+..+.+++..-.+ .+...+|.=|++-+..=+++|..|.+
T Consensus 94 ~~~~l~~~~~~~~~~we~f~~e~~~~~~~vdee~~~~~~~l~e~Y~~~~~ 143 (145)
T PF14942_consen 94 KDDYLQANREQRKQEWEEFMKEQQQKKQRVDEEFREKEERLKEQYSEMEK 143 (145)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4666666666777777766542 34468999999999998999998753
No 69
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=20.77 E-value=1e+02 Score=24.76 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=18.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhh
Q psy1232 14 EYLEKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 14 ~~~eksk~Lq~qL~~L~~El~~lk~ 38 (67)
+.++|=+.|+.||.+|+.++..+.+
T Consensus 28 ~~~qkie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 28 DLLQKIEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccc
Confidence 3444667889999999999876544
No 70
>KOG3119|consensus
Probab=20.68 E-value=2e+02 Score=20.80 Aligned_cols=31 Identities=35% Similarity=0.420 Sum_probs=18.2
Q ss_pred HHHHHHH-hHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 12 RVEYLEK-SKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 12 R~~~~ek-sk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
|+.+++| |..|..+...|+.||..+|+-..+
T Consensus 223 r~~~leken~~lr~~v~~l~~el~~~~~~~~~ 254 (269)
T KOG3119|consen 223 RVAELEKENEALRTQVEQLKKELATLRRLFLQ 254 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5555553 555666666666666666654433
Done!