Query psy1232
Match_columns 67
No_of_seqs 89 out of 107
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 16:02:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1232.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1232hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ef1_C Moesin; membrane, FERM 99.9 1.1E-28 3.7E-33 154.6 1.9 61 6-66 15-75 (90)
2 2i1j_A Moesin; FERM, coiled-co 99.9 5.9E-25 2E-29 168.5 2.2 61 5-66 500-560 (575)
3 3viq_B Mating-type switching p 78.2 4.4 0.00015 24.5 4.6 36 18-53 9-52 (85)
4 1t2k_D Cyclic-AMP-dependent tr 72.3 9.7 0.00033 20.7 5.0 23 15-37 34-56 (61)
5 3v86_A De novo design helix; c 66.3 8 0.00027 18.7 3.0 21 21-41 4-24 (27)
6 2zxx_A Geminin; coiled-coil, c 64.8 11 0.00038 22.4 4.1 29 14-42 31-59 (79)
7 1ci6_A Transcription factor AT 61.3 19 0.00063 19.9 5.1 21 17-37 37-57 (63)
8 1jnm_A Proto-oncogene C-JUN; B 60.6 18 0.00063 19.7 4.5 21 17-37 36-56 (62)
9 2xdj_A Uncharacterized protein 60.3 24 0.00081 20.8 5.3 21 20-40 23-43 (83)
10 2wt7_A Proto-oncogene protein 58.6 21 0.00071 19.6 5.0 21 17-37 37-57 (63)
11 1hjb_A Ccaat/enhancer binding 57.8 27 0.00094 20.8 5.2 28 12-39 44-72 (87)
12 1gu4_A CAAT/enhancer binding p 56.5 27 0.00093 20.3 5.1 27 12-38 44-71 (78)
13 1wlq_A Geminin; coiled-coil; 2 56.5 18 0.00063 21.7 4.0 29 14-42 35-63 (83)
14 3m9b_A Proteasome-associated A 55.9 13 0.00045 26.3 3.8 28 14-41 65-92 (251)
15 1uii_A Geminin; human, DNA rep 55.1 20 0.00069 21.5 4.0 29 14-42 43-71 (83)
16 2v71_A Nuclear distribution pr 54.9 46 0.0016 22.4 6.9 28 17-44 56-83 (189)
17 3ra3_A P1C; coiled coil domain 54.3 16 0.00056 17.6 2.9 19 19-37 9-27 (28)
18 3i00_A HIP-I, huntingtin-inter 53.7 33 0.0011 21.4 5.1 35 3-37 26-60 (120)
19 3iz5_c 60S ribosomal protein L 49.4 24 0.00082 22.4 4.0 31 19-49 16-46 (124)
20 1r73_A TM1492, 50S ribosomal p 48.4 14 0.00049 20.7 2.5 27 20-46 12-38 (66)
21 3qh9_A Liprin-beta-2; coiled-c 46.9 44 0.0015 19.9 5.5 34 21-54 44-79 (81)
22 1kil_E Complexin I snare-compl 46.8 4.9 0.00017 22.2 0.3 12 50-61 36-48 (49)
23 4a17_U RPL35, 60S ribosomal pr 46.3 27 0.00094 22.1 3.9 31 19-49 15-46 (124)
24 2wg5_A General control protein 45.9 20 0.00067 21.7 3.0 21 20-40 10-30 (109)
25 1hlo_A Protein (transcription 45.6 18 0.0006 20.6 2.7 20 20-39 60-79 (80)
26 3r8s_Y 50S ribosomal protein L 45.3 12 0.00041 20.9 1.8 27 19-45 11-37 (63)
27 3v2d_2 50S ribosomal protein L 45.2 14 0.00048 21.2 2.2 28 19-46 18-45 (72)
28 3j21_W 50S ribosomal protein L 45.0 14 0.00048 21.2 2.1 26 19-44 11-36 (72)
29 1gd2_E Transcription factor PA 42.6 35 0.0012 19.5 3.6 10 22-31 34-43 (70)
30 1vq8_V 50S ribosomal protein L 41.7 20 0.00069 20.4 2.5 24 19-42 14-37 (71)
31 4dzn_A Coiled-coil peptide CC- 41.3 29 0.00099 17.3 2.7 15 23-37 8-22 (33)
32 3ra3_B P2F; coiled coil domain 40.7 32 0.0011 16.6 3.1 20 17-36 7-26 (28)
33 2zjr_V 50S ribosomal protein L 39.1 18 0.0006 20.4 1.9 27 20-46 12-38 (67)
34 3ljc_A ATP-dependent protease 36.9 62 0.0021 21.4 4.7 31 4-34 216-249 (252)
35 2v66_B Nuclear distribution pr 36.5 76 0.0026 19.7 6.9 40 3-42 14-53 (111)
36 1t6f_A Geminin; coiled-coil, c 36.4 46 0.0016 17.2 4.0 28 15-42 5-32 (37)
37 3kqg_A Langerin, C-type lectin 35.5 37 0.0013 20.7 3.2 35 3-38 3-37 (182)
38 2v4h_A NF-kappa-B essential mo 34.7 58 0.002 20.4 4.0 21 15-35 88-108 (110)
39 1vcs_A Vesicle transport throu 34.7 64 0.0022 19.1 4.1 28 12-39 69-96 (102)
40 3m91_A Proteasome-associated A 33.9 59 0.002 17.6 3.6 24 15-38 21-44 (51)
41 2wvr_A Geminin; DNA replicatio 33.6 55 0.0019 22.7 4.0 29 14-42 112-140 (209)
42 3rk3_E Complexin-1; snare prot 32.3 11 0.00038 21.6 0.3 15 49-63 38-53 (63)
43 1l4a_E Synaphin A; snare, snar 31.3 12 0.0004 22.4 0.3 14 49-62 42-56 (79)
44 3u5e_h 60S ribosomal protein L 31.0 42 0.0015 21.1 2.9 24 19-42 14-37 (120)
45 3jyw_X 60S ribosomal protein L 30.0 22 0.00075 21.2 1.4 27 19-45 13-39 (86)
46 3trt_A Vimentin; cytoskeleton, 29.5 46 0.0016 18.4 2.7 12 26-37 51-62 (77)
47 2l5g_A GPS2 protein, G protein 28.8 67 0.0023 16.7 3.6 22 21-42 12-33 (38)
48 3kin_B Kinesin heavy chain; mo 28.7 1E+02 0.0035 18.7 4.7 22 16-37 95-116 (117)
49 1wt6_A Myotonin-protein kinase 28.5 97 0.0033 18.4 4.6 27 14-40 49-75 (81)
50 1nkp_B MAX protein, MYC proto- 28.3 64 0.0022 18.1 3.2 20 21-40 51-70 (83)
51 2zkr_v 60S ribosomal protein L 28.0 51 0.0018 20.8 2.9 23 19-41 14-36 (123)
52 3bbo_Z Ribosomal protein L29; 27.2 26 0.00087 23.7 1.4 29 19-47 75-103 (173)
53 1jcd_A Major outer membrane li 27.0 81 0.0028 17.1 3.7 19 21-39 22-40 (52)
54 1am9_A Srebp-1A, protein (ster 26.9 75 0.0026 18.0 3.3 21 20-40 53-73 (82)
55 3s9g_A Protein hexim1; cyclin 25.8 1.2E+02 0.0042 18.8 5.4 26 24-54 65-90 (104)
56 2aze_B Transcription factor E2 25.8 34 0.0012 20.8 1.7 20 22-41 4-23 (106)
57 3cve_A Homer protein homolog 1 25.4 1E+02 0.0035 17.7 4.6 23 17-39 14-36 (72)
58 2zvf_A Alanyl-tRNA synthetase; 25.0 81 0.0028 19.4 3.5 23 17-39 32-54 (171)
59 3mq7_A Bone marrow stromal ant 24.7 1.4E+02 0.0048 19.0 6.0 14 23-36 70-83 (121)
60 3cvf_A Homer-3, homer protein 23.5 1.2E+02 0.0041 17.7 4.6 23 17-39 20-42 (79)
61 3swk_A Vimentin; cytoskeleton, 23.3 1E+02 0.0035 17.8 3.5 17 21-37 67-83 (86)
62 1aie_A P53; oligomer, DNA; 1.5 21.5 14 0.00049 18.4 -0.5 12 55-66 8-19 (31)
63 2wy7_Q SBI, IGG-binding protei 20.4 1.1E+02 0.0037 17.9 3.1 16 16-31 56-71 (80)
64 3hnw_A Uncharacterized protein 20.4 1.7E+02 0.0058 18.3 4.6 20 19-38 98-117 (138)
No 1
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.137.5.1
Probab=99.94 E-value=1.1e-28 Score=154.65 Aligned_cols=61 Identities=34% Similarity=0.535 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHcccchhhhhccC
Q psy1232 6 LEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKP 66 (67)
Q Consensus 6 ~eiE~eR~~~~eksk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH~eNvr~G~dKykTLr~i 66 (67)
.+||++|++|++||++||+||++|++||+++|+++|+|++|+||++||++|+|||+|||+|
T Consensus 15 ~~~E~eR~~~~eKsk~lq~QL~~Lk~ELe~lk~~~k~t~~D~lh~eN~~~G~dKykTLr~i 75 (90)
T 1ef1_C 15 DRSEEERTTEAEKNERVQKHLKALTSELANARDESKKTANDMIHAENMRLGRDKYKTLRQI 75 (90)
T ss_dssp TTGGGGCCCHHHHCHHHHHHHHHHHHHHHTTBCTTCCCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHHHhcchhHHHHHHHH
Confidence 3689999999999999999999999999999999999999999999999999999999987
No 2
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=99.90 E-value=5.9e-25 Score=168.51 Aligned_cols=61 Identities=30% Similarity=0.494 Sum_probs=59.1
Q ss_pred hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhhhHHHhHHHHHHcccchhhhhccC
Q psy1232 5 SLEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRKP 66 (67)
Q Consensus 5 s~eiE~eR~~~~eksk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH~eNvr~G~dKykTLr~i 66 (67)
+.++ ++|++|++||++||+||++|++||+++||++|+|++|+||++||++|+|||+|||+|
T Consensus 500 ~~~~-~eR~~~~ekn~~lq~qL~~L~~el~~~r~~~k~t~~D~lh~en~~~GrdKykTLr~i 560 (575)
T 2i1j_A 500 VDPV-ADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKTLREI 560 (575)
T ss_dssp CCGG-GGCCCHHHHCHHHHHHHHHHHHHHHTTBCGGGCCHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred ccch-HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhcchhHHHHHHhhhcCchHHHHHHHH
Confidence 5678 899999999999999999999999999999999999999999999999999999987
No 3
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=78.23 E-value=4.4 Score=24.50 Aligned_cols=36 Identities=22% Similarity=0.317 Sum_probs=24.7
Q ss_pred HhHHHHHHHHHHHHHHHHhhh------hh--hhhhHHHhHHHHH
Q psy1232 18 KSKHLQDQLRDLRTEIEVLKV------GE--KQSELDLLHEEQV 53 (67)
Q Consensus 18 ksk~Lq~qL~~L~~El~~lk~------e~--k~t~~D~lH~eNv 53 (67)
+-..|+.+...|..+|..++. .+ -...++.+|..|-
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YNe 52 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYNE 52 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhH
Confidence 334677777777777777653 22 2468999999984
No 4
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=72.32 E-value=9.7 Score=20.73 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=14.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhh
Q psy1232 15 YLEKSKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 15 ~~eksk~Lq~qL~~L~~El~~lk 37 (67)
.-..|..|+.++..|+.|+..|+
T Consensus 34 L~~~n~~L~~~i~~L~~e~~~Lk 56 (61)
T 1t2k_D 34 LSSLNGQLQSEVTLLRNEVAQLK 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33466666666666666666664
No 5
>3v86_A De novo design helix; computational design of A protein crystal, helical coil, DE designed helix, de novo protein; 2.91A {Synthetic}
Probab=66.25 E-value=8 Score=18.65 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q psy1232 21 HLQDQLRDLRTEIEVLKVGEK 41 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk~e~k 41 (67)
+|.+...+|+.|...+||+-|
T Consensus 4 qlkdevgelkgevralkdevk 24 (27)
T 3v86_A 4 QLKDEVGELKGEVRALKDEVK 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhHHHHHHHHHh
Confidence 567788899999999998865
No 6
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=64.78 E-value=11 Score=22.41 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 14 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 14 ~~~eksk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
+.++-|+.|...+..++.||..+|.+++.
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~ 59 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARLRKENKD 59 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988764
No 7
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=61.32 E-value=19 Score=19.92 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=13.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk 37 (67)
..|..|..++..|+.|+..||
T Consensus 37 ~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 37 KKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 466666666666666666664
No 8
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=60.63 E-value=18 Score=19.66 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=12.1
Q ss_pred HHhHHHHHHHHHHHHHHHHhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk 37 (67)
..|..|..++..|+.|+..|+
T Consensus 36 ~~n~~L~~~v~~L~~e~~~Lk 56 (62)
T 1jnm_A 36 AQNSELASTANMLREQVAQLK 56 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355556666666666655554
No 9
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=60.34 E-value=24 Score=20.81 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy1232 20 KHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~e~ 40 (67)
-.|+.||..|+.||+.||-.-
T Consensus 23 ~~Lq~Ql~~Lq~Ev~~LRGqi 43 (83)
T 2xdj_A 23 TQLQQQLSDNQSDIDSLRGQI 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHH
Confidence 468889999999998887643
No 10
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.63 E-value=21 Score=19.60 Aligned_cols=21 Identities=29% Similarity=0.423 Sum_probs=10.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk 37 (67)
..|..|+.++..|+.|+..|+
T Consensus 37 ~~n~~L~~ei~~L~~e~~~Lk 57 (63)
T 2wt7_A 37 DEKSALQTEIANLLKEKEKLE 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555443
No 11
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=57.83 E-value=27 Score=20.76 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=21.5
Q ss_pred HHHHH-HHhHHHHHHHHHHHHHHHHhhhh
Q psy1232 12 RVEYL-EKSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 12 R~~~~-eksk~Lq~qL~~L~~El~~lk~e 39 (67)
|++.+ ..|..|..++..|+.|+..|+.-
T Consensus 44 r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 44 KVLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555 47888999999999998888653
No 12
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.51 E-value=27 Score=20.34 Aligned_cols=27 Identities=26% Similarity=0.433 Sum_probs=20.9
Q ss_pred HHHHH-HHhHHHHHHHHHHHHHHHHhhh
Q psy1232 12 RVEYL-EKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 12 R~~~~-eksk~Lq~qL~~L~~El~~lk~ 38 (67)
|++++ ..|..|..++..|+.|+..||.
T Consensus 44 r~~~L~~eN~~L~~~v~~L~~E~~~Lr~ 71 (78)
T 1gu4_A 44 KVLELTAENERLQKKVEQLSRELSTLRN 71 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555 4788899999999998888764
No 13
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=56.49 E-value=18 Score=21.72 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=25.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 14 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 14 ~~~eksk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
+.++-|+.|.+.+..+..||..+|-+++.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~ 63 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKD 63 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999988764
No 14
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=55.92 E-value=13 Score=26.30 Aligned_cols=28 Identities=14% Similarity=0.315 Sum_probs=22.2
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy1232 14 EYLEKSKHLQDQLRDLRTEIEVLKVGEK 41 (67)
Q Consensus 14 ~~~eksk~Lq~qL~~L~~El~~lk~e~k 41 (67)
....+|+.|...|+.++.||..+|.+-.
T Consensus 65 ~L~arNe~L~~~Lk~ar~El~~LkeEle 92 (251)
T 3m9b_A 65 SLAARNSKLMETLKEARQQLLALREEVD 92 (251)
T ss_dssp HHTTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3346888899999999999999887654
No 15
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=55.06 E-value=20 Score=21.53 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=24.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 14 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 14 ~~~eksk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
+.++-|+.|.+++..|..||+.+|-+...
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~e 71 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKE 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35578999999999999999999877654
No 16
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=54.89 E-value=46 Score=22.45 Aligned_cols=28 Identities=25% Similarity=0.363 Sum_probs=20.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLKVGEKQSE 44 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk~e~k~t~ 44 (67)
-+++.|+.++..|+.|++.+|..-....
T Consensus 56 k~~~~L~~~~~~L~~E~e~~k~K~~~~~ 83 (189)
T 2v71_A 56 QRNRDLQADNQRLKYEVEALKEKLEHQY 83 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888877655443
No 17
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=54.28 E-value=16 Score=17.63 Aligned_cols=19 Identities=26% Similarity=0.504 Sum_probs=15.8
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q psy1232 19 SKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk 37 (67)
|..|.+.+..|+..|+++|
T Consensus 9 ndaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 9 NDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhc
Confidence 5577888999999999886
No 18
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=53.72 E-value=33 Score=21.44 Aligned_cols=35 Identities=14% Similarity=0.268 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy1232 3 RLSLEIEKERVEYLEKSKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 3 ~ls~eiE~eR~~~~eksk~Lq~qL~~L~~El~~lk 37 (67)
+|..++|.-..++-----.|..++..|.+||+.-+
T Consensus 26 ~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 26 GLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555678888888999888876
No 19
>3iz5_c 60S ribosomal protein L35 (L29P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2j37_5 2go5_5 3izr_c
Probab=49.35 E-value=24 Score=22.40 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhHHHhH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSELDLLH 49 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~D~lH 49 (67)
...|.++|.+|+.|+-.||..-...+++..|
T Consensus 16 ~eEL~~~L~eLK~ELf~LRfq~atgqlen~~ 46 (124)
T 3iz5_c 16 KDDLTKQLAELKTELGQLRIQKVASSGSKLN 46 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccchH
Confidence 4579999999999999998876554555444
No 20
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=48.38 E-value=14 Score=20.72 Aligned_cols=27 Identities=15% Similarity=0.298 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy1232 20 KHLQDQLRDLRTEIEVLKVGEKQSELD 46 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~e~k~t~~D 46 (67)
..|.++|.+|+.|+-.+|-.-...+++
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~atgql~ 38 (66)
T 1r73_A 12 EELKNLLEEKKRQLMELRFQLAMGQLK 38 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcc
Confidence 578999999999999998765433333
No 21
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=46.86 E-value=44 Score=19.94 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHhhh--hhhhhhHHHhHHHHHH
Q psy1232 21 HLQDQLRDLRTEIEVLKV--GEKQSELDLLHEEQVR 54 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk~--e~k~t~~D~lH~eNvr 54 (67)
+...+|+.-+.||++++. +.|...+-.+|.+-++
T Consensus 44 QyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l~~ 79 (81)
T 3qh9_A 44 QYEWKLKATKAEVAQLQEQVALKDAEIERLHSQLSR 79 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 344567888888888875 5677778888876543
No 22
>1kil_E Complexin I snare-complex binding region; helix bound to four helix bundle, membrane protein; 2.30A {Rattus norvegicus} SCOP: h.1.15.1
Probab=46.77 E-value=4.9 Score=22.17 Aligned_cols=12 Identities=42% Similarity=0.772 Sum_probs=9.3
Q ss_pred HHHHHcc-cchhh
Q psy1232 50 EEQVRLG-ENKYS 61 (67)
Q Consensus 50 ~eNvr~G-~dKyk 61 (67)
.+++|+| ||||.
T Consensus 36 RE~mRq~IRdKY~ 48 (49)
T 1kil_E 36 REVMRQGIRDKYG 48 (49)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 5778888 78885
No 23
>4a17_U RPL35, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_U 4a1c_U 4a1e_U
Probab=46.31 E-value=27 Score=22.14 Aligned_cols=31 Identities=23% Similarity=0.372 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhh-hHHHhH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQS-ELDLLH 49 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t-~~D~lH 49 (67)
...|.++|.+|+.|+-.||..-... +++..|
T Consensus 15 ~eEL~~~L~eLK~ELf~LRfq~atggqlen~~ 46 (124)
T 4a17_U 15 EEQLVGELGKLQTELSQLRIAKIAGGTANKLG 46 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccCCcH
Confidence 4579999999999999998876554 455433
No 24
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=45.95 E-value=20 Score=21.74 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy1232 20 KHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~e~ 40 (67)
++|+.+++.|+.++..++.+-
T Consensus 10 ~~l~~~~~~l~~~i~~lkeel 30 (109)
T 2wg5_A 10 KQLEDKVEELLSKNYHLENEV 30 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666665543
No 25
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=45.63 E-value=18 Score=20.55 Aligned_cols=20 Identities=15% Similarity=0.213 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHhhhh
Q psy1232 20 KHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~e 39 (67)
+.|+.++..|..+++.|+.+
T Consensus 60 ~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 60 QYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 46777778888887777654
No 26
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=45.28 E-value=12 Score=20.86 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSEL 45 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~ 45 (67)
...|..+|.+|+.|+-.+|-.-...++
T Consensus 11 ~~EL~~~l~elk~Elf~LR~q~atgql 37 (63)
T 3r8s_Y 11 VEELNTELLNLLREQFNLRMQAASGQL 37 (63)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 357899999999999999886544333
No 27
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=45.19 E-value=14 Score=21.16 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSELD 46 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~D 46 (67)
...|..+|.+|+.|+-.+|..-...+++
T Consensus 18 ~eEL~~~L~elk~ELf~LR~q~atgql~ 45 (72)
T 3v2d_2 18 PVELEKLVREKKRELMELRFQASIGQLS 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4679999999999999998875544443
No 28
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=45.01 E-value=14 Score=21.18 Aligned_cols=26 Identities=12% Similarity=0.180 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhh
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSE 44 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~ 44 (67)
...|..+|.+|+.|+-.||-.-...+
T Consensus 11 ~~EL~~~L~elk~ELf~LR~q~atgq 36 (72)
T 3j21_W 11 IEEIDAKIRELRLQLAKERGLLTMGT 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 45789999999999999988655443
No 29
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=42.64 E-value=35 Score=19.52 Aligned_cols=10 Identities=30% Similarity=0.494 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy1232 22 LQDQLRDLRT 31 (67)
Q Consensus 22 Lq~qL~~L~~ 31 (67)
|..++..|..
T Consensus 34 LE~~v~~le~ 43 (70)
T 1gd2_E 34 LETQVVTLKE 43 (70)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 30
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=41.67 E-value=20 Score=20.39 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
...|..+|.+|+.|+-.+|..-..
T Consensus 14 ~~EL~~~l~elk~ELf~LR~q~at 37 (71)
T 1vq8_V 14 PAEREAELDDLKTELLNARAVQAA 37 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367999999999999999876443
No 31
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=41.32 E-value=29 Score=17.31 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhh
Q psy1232 23 QDQLRDLRTEIEVLK 37 (67)
Q Consensus 23 q~qL~~L~~El~~lk 37 (67)
.+.+..|+.||+.+|
T Consensus 8 kqeiaalkkeiaalk 22 (33)
T 4dzn_A 8 KQEIAALKKEIAALK 22 (33)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444555554444
No 32
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=40.67 E-value=32 Score=16.57 Aligned_cols=20 Identities=30% Similarity=0.504 Sum_probs=14.8
Q ss_pred HHhHHHHHHHHHHHHHHHHh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVL 36 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~l 36 (67)
.||-+|.+.+..|.-||+.+
T Consensus 7 qknarlkqeiaaleyeiaal 26 (28)
T 3ra3_B 7 QKNARLKQEIAALEYEIAAL 26 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHh
Confidence 57777777777777777765
No 33
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=39.13 E-value=18 Score=20.39 Aligned_cols=27 Identities=11% Similarity=0.259 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHH
Q psy1232 20 KHLQDQLRDLRTEIEVLKVGEKQSELD 46 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~e~k~t~~D 46 (67)
..|..+|.+|+.|+-.+|..-...+++
T Consensus 12 ~EL~~~l~elk~ELf~LR~q~atgql~ 38 (67)
T 2zjr_V 12 TDFAKEIDARKKELMELRFQAAAGQLA 38 (67)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 578899999999999998765433333
No 34
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=36.86 E-value=62 Score=21.40 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=18.9
Q ss_pred hhHHHHHH---HHHHHHHhHHHHHHHHHHHHHHH
Q psy1232 4 LSLEIEKE---RVEYLEKSKHLQDQLRDLRTEIE 34 (67)
Q Consensus 4 ls~eiE~e---R~~~~eksk~Lq~qL~~L~~El~ 34 (67)
+..+|... +++-..|.=-|++||+..+.||-
T Consensus 216 l~~~I~~~v~~~~~k~Qrey~LrEQlk~IqkELG 249 (252)
T 3ljc_A 216 VEKRIRNRVKKQMEKSQREYYLNEQMKAIQKELG 249 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444443 33334444457889999998885
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=36.50 E-value=76 Score=19.68 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 3 RLSLEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 3 ~ls~eiE~eR~~~~eksk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
+|..|.|.-|.-|.......-.+...|+.||..++.....
T Consensus 14 ~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~ 53 (111)
T 2v66_B 14 RLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQ 53 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666555554444444566777777777665544
No 36
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=36.45 E-value=46 Score=17.17 Aligned_cols=28 Identities=25% Similarity=0.389 Sum_probs=20.1
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 15 YLEKSKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 15 ~~eksk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
.+.-|..|..-+..-..||+.+|.++.+
T Consensus 5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~e 32 (37)
T 1t6f_A 5 ALKENEKLHKEIEQKDNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 4456777777777777888888877654
No 37
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=35.51 E-value=37 Score=20.72 Aligned_cols=35 Identities=26% Similarity=0.440 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy1232 3 RLSLEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 3 ~ls~eiE~eR~~~~eksk~Lq~qL~~L~~El~~lk~ 38 (67)
+|+.+++.-+.+ +++-..|+.++..|+++|+.++.
T Consensus 3 ~l~~~~~~l~~~-~~~~~~l~~~~~~l~~~l~~~~~ 37 (182)
T 3kqg_A 3 TLNAQIPELKSD-LEKASALNTKIRALQGSLENMSK 37 (182)
T ss_dssp ----------CH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 466777766543 44666778888888887776644
No 38
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=34.73 E-value=58 Score=20.42 Aligned_cols=21 Identities=38% Similarity=0.544 Sum_probs=11.5
Q ss_pred HHHHhHHHHHHHHHHHHHHHH
Q psy1232 15 YLEKSKHLQDQLRDLRTEIEV 35 (67)
Q Consensus 15 ~~eksk~Lq~qL~~L~~El~~ 35 (67)
..+....|+.||..|+.++..
T Consensus 88 l~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 88 LVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHhHHHHHHHHHHHHHHHHHh
Confidence 444555666666666555543
No 39
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.67 E-value=64 Score=19.09 Aligned_cols=28 Identities=14% Similarity=0.361 Sum_probs=15.8
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy1232 12 RVEYLEKSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 12 R~~~~eksk~Lq~qL~~L~~El~~lk~e 39 (67)
|..|..|=+..+..|..|+.++..+++.
T Consensus 69 R~~~~~klr~Yk~dL~~lk~elk~~~~~ 96 (102)
T 1vcs_A 69 RGMYSNRMRSYKQEMGKLETDFKRSRIA 96 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5555555555555566566555555544
No 40
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=33.86 E-value=59 Score=17.57 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=19.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHhhh
Q psy1232 15 YLEKSKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 15 ~~eksk~Lq~qL~~L~~El~~lk~ 38 (67)
-..+|..|-.=|+.-+.+|..|+.
T Consensus 21 L~~rN~rL~~~L~~AR~el~~Lke 44 (51)
T 3m91_A 21 LAARNSKLMETLKEARQQLLALRE 44 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888888888764
No 41
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=33.65 E-value=55 Score=22.66 Aligned_cols=29 Identities=28% Similarity=0.417 Sum_probs=24.9
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 14 EYLEKSKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 14 ~~~eksk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
+.++-|+.|..++..|..||+.+|-++..
T Consensus 112 eaLeEN~~Lh~~ie~l~eEi~~LkeEn~e 140 (209)
T 2wvr_A 112 EALKENEKLHKEIEQKDNEIARLKKENKE 140 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999887764
No 42
>3rk3_E Complexin-1; snare proteins, membrane fusion, membrane protein-exocytosis transport protein complex, membrane protein-exocytosis COMP; 3.50A {Homo sapiens} PDB: 3rl0_g
Probab=32.35 E-value=11 Score=21.62 Aligned_cols=15 Identities=40% Similarity=0.636 Sum_probs=11.2
Q ss_pred HHHHHHcc-cchhhhh
Q psy1232 49 HEEQVRLG-ENKYSTL 63 (67)
Q Consensus 49 H~eNvr~G-~dKykTL 63 (67)
-.+++|+| ||||..-
T Consensus 38 ERE~mRQ~IRdKY~ik 53 (63)
T 3rk3_E 38 EREAVRQGIRDKYGIK 53 (63)
T ss_dssp HHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccc
Confidence 35788888 8999753
No 43
>1l4a_E Synaphin A; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=31.35 E-value=12 Score=22.39 Aligned_cols=14 Identities=29% Similarity=0.534 Sum_probs=10.8
Q ss_pred HHHHHHcc-cchhhh
Q psy1232 49 HEEQVRLG-ENKYST 62 (67)
Q Consensus 49 H~eNvr~G-~dKykT 62 (67)
-.+++|+| ||||..
T Consensus 42 ERE~mRq~IRdKY~i 56 (79)
T 1l4a_E 42 EREEMRQTIRDKYGL 56 (79)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcc
Confidence 35788888 899964
No 44
>3u5e_h 60S ribosomal protein L35-A, 60S ribosomal protein L33-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 1s1i_X 2wwa_N 2ww9_N 3izc_c 3izs_c 2wwb_N 3o5h_c 3o58_c 3u5i_h 4b6a_h
Probab=31.04 E-value=42 Score=21.09 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhh
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
...|.++|.+|+.|+-.||..-..
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~at 37 (120)
T 3u5e_h 14 KEQLASQLVDLKKELAELKVQKLS 37 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457999999999999999886543
No 45
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=29.99 E-value=22 Score=21.24 Aligned_cols=27 Identities=33% Similarity=0.416 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSEL 45 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~ 45 (67)
...|.++|.+|+.|+-.||..-...++
T Consensus 13 ~eEL~~~L~eLK~ELf~LRfq~atgql 39 (86)
T 3jyw_X 13 KEQLASQLVDLKKELAELKVQKLSRPS 39 (86)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 467999999999999999887654443
No 46
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=29.54 E-value=46 Score=18.36 Aligned_cols=12 Identities=25% Similarity=0.379 Sum_probs=5.6
Q ss_pred HHHHHHHHHHhh
Q psy1232 26 LRDLRTEIEVLK 37 (67)
Q Consensus 26 L~~L~~El~~lk 37 (67)
|...++||..+|
T Consensus 51 l~~~k~Ei~elr 62 (77)
T 3trt_A 51 LRQAKQESTEYR 62 (77)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334455555544
No 47
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=28.81 E-value=67 Score=16.65 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q psy1232 21 HLQDQLRDLRTEIEVLKVGEKQ 42 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk~e~k~ 42 (67)
...+|+..|...+++|+.+.-+
T Consensus 12 EtkeQi~~l~~kl~~LkeEKHQ 33 (38)
T 2l5g_A 12 ETKEQILKLEEKLLALQEEKHQ 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4566888888888888877544
No 48
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=28.67 E-value=1e+02 Score=18.70 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=15.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHhh
Q psy1232 16 LEKSKHLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 16 ~eksk~Lq~qL~~L~~El~~lk 37 (67)
.++.+.|+.++..|..||+..|
T Consensus 95 ~~~~~~L~~~i~~Le~el~~~R 116 (117)
T 3kin_B 95 KEKNKALKSVIQHLEVELNRWR 116 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 3466778888888888877655
No 49
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=28.48 E-value=97 Score=18.42 Aligned_cols=27 Identities=22% Similarity=0.458 Sum_probs=18.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhh
Q psy1232 14 EYLEKSKHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 14 ~~~eksk~Lq~qL~~L~~El~~lk~e~ 40 (67)
++-.+|+.|...+..|+.+++.++.+.
T Consensus 49 eae~rn~eL~~e~~~l~~~~eelq~~~ 75 (81)
T 1wt6_A 49 EAEARNRDLEAHVRQLQERMELLQAEG 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 445677788888888888887776543
No 50
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=28.28 E-value=64 Score=18.12 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHhhhhh
Q psy1232 21 HLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk~e~ 40 (67)
.|+.+...|..+++.++.+.
T Consensus 51 ~L~~~~~~l~~e~~~L~~~~ 70 (83)
T 1nkp_B 51 YMRRKNHTHQQDIDDLKRQN 70 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666665543
No 51
>2zkr_v 60S ribosomal protein L35; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=27.96 E-value=51 Score=20.78 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=19.1
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhh
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEK 41 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k 41 (67)
...|.++|.+|+.|+-.||..-.
T Consensus 14 ~eEL~~~L~eLK~ELf~LRfq~a 36 (123)
T 2zkr_v 14 KEELLKQLDDLKVELSQLRVAKV 36 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 36799999999999999987643
No 52
>3bbo_Z Ribosomal protein L29; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=27.24 E-value=26 Score=23.66 Aligned_cols=29 Identities=21% Similarity=0.336 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhhhhHHH
Q psy1232 19 SKHLQDQLRDLRTEIEVLKVGEKQSELDL 47 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~e~k~t~~D~ 47 (67)
...|.++|.+|+.||-.||......+++.
T Consensus 75 ~eEL~ekL~eLKkELFnLRfQkATGQLeN 103 (173)
T 3bbo_Z 75 TEQLQEEVVDLKGELFMLRLQKSARNEFK 103 (173)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHCCCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 36899999999999999988655444433
No 53
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=27.01 E-value=81 Score=17.06 Aligned_cols=19 Identities=11% Similarity=0.177 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q psy1232 21 HLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk~e 39 (67)
.|+.....|++++..++.+
T Consensus 22 qLssdV~al~~~v~~ak~e 40 (52)
T 1jcd_A 22 QASNDANAARSDAQAAKDD 40 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555555554443
No 54
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C
Probab=26.91 E-value=75 Score=18.02 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhhhhh
Q psy1232 20 KHLQDQLRDLRTEIEVLKVGE 40 (67)
Q Consensus 20 k~Lq~qL~~L~~El~~lk~e~ 40 (67)
+.|+.+...|..|.+.|+..-
T Consensus 53 ~~Lq~~~~~L~~e~~~L~~~~ 73 (82)
T 1am9_A 53 RFLQHSNQKLKQENLSLRTAV 73 (82)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777776543
No 55
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.81 E-value=1.2e+02 Score=18.76 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhhhhhhhHHHhHHHHHH
Q psy1232 24 DQLRDLRTEIEVLKVGEKQSELDLLHEEQVR 54 (67)
Q Consensus 24 ~qL~~L~~El~~lk~e~k~t~~D~lH~eNvr 54 (67)
.++.+|..||+.|+.+ +..|..+|..
T Consensus 65 ~~v~eLe~everL~~E-----Nq~L~~e~~~ 90 (104)
T 3s9g_A 65 ARVRELELELDRLRAE-----NLQLLTENEL 90 (104)
T ss_dssp HHHHHHHHHHHHHHHH-----HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHH-----HHHHHHHHHh
Confidence 3677777777777655 4445555543
No 56
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=25.78 E-value=34 Score=20.82 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q psy1232 22 LQDQLRDLRTEIEVLKVGEK 41 (67)
Q Consensus 22 Lq~qL~~L~~El~~lk~e~k 41 (67)
+..++..|+.||+.|...++
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~ 23 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQ 23 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666655554
No 57
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=25.42 E-value=1e+02 Score=17.73 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=19.3
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk~e 39 (67)
.+|..|+.++..|...|+..+.+
T Consensus 14 ~~N~~Le~~v~~le~~Le~s~~~ 36 (72)
T 3cve_A 14 IRNKDLEGQLSEMEQRLEKSQSE 36 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 47888999999999999888743
No 58
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=25.01 E-value=81 Score=19.40 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=14.8
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk~e 39 (67)
++=..|++.+++|+.+|+.++.+
T Consensus 32 ~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 32 KTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666777777777666654
No 59
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=24.70 E-value=1.4e+02 Score=18.98 Aligned_cols=14 Identities=36% Similarity=0.582 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHh
Q psy1232 23 QDQLRDLRTEIEVL 36 (67)
Q Consensus 23 q~qL~~L~~El~~l 36 (67)
|.++++|+.||..|
T Consensus 70 q~~vqeLqgEI~~L 83 (121)
T 3mq7_A 70 QKKVEELEGEITTL 83 (121)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 60
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=23.50 E-value=1.2e+02 Score=17.74 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=19.6
Q ss_pred HHhHHHHHHHHHHHHHHHHhhhh
Q psy1232 17 EKSKHLQDQLRDLRTEIEVLKVG 39 (67)
Q Consensus 17 eksk~Lq~qL~~L~~El~~lk~e 39 (67)
.+|..|..++..|...|+..+.+
T Consensus 20 ~rN~~Le~~v~~le~~Le~s~~~ 42 (79)
T 3cvf_A 20 TRNAELEHQLRAMERSLEEARAE 42 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999888743
No 61
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=23.26 E-value=1e+02 Score=17.81 Aligned_cols=17 Identities=35% Similarity=0.595 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy1232 21 HLQDQLRDLRTEIEVLK 37 (67)
Q Consensus 21 ~Lq~qL~~L~~El~~lk 37 (67)
.|+.|+..|+.||.-+|
T Consensus 67 dLE~kvesL~eEl~fLk 83 (86)
T 3swk_A 67 DLERKVESLQEEIAFLK 83 (86)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57777777777777665
No 62
>1aie_A P53; oligomer, DNA; 1.50A {Homo sapiens} SCOP: a.53.1.1 PDB: 2j0z_A 1c26_A 1pes_A 1pet_A 2j10_A 1hs5_A 2j11_A
Probab=21.55 E-value=14 Score=18.43 Aligned_cols=12 Identities=17% Similarity=0.520 Sum_probs=9.8
Q ss_pred cccchhhhhccC
Q psy1232 55 LGENKYSTLRKP 66 (67)
Q Consensus 55 ~G~dKykTLr~i 66 (67)
.||..|..|++|
T Consensus 8 rGRe~yEml~ki 19 (31)
T 1aie_A 8 RGRERFEMFREL 19 (31)
T ss_dssp CSHHHHHHHHHH
T ss_pred ccHHHHHHHHHH
Confidence 589999888775
No 63
>2wy7_Q SBI, IGG-binding protein; immune system, immune response, innate immunity, complement inflammatory response; 1.70A {Staphylococcus aureus} PDB: 2wy8_Q 2jvg_A 2jvh_A
Probab=20.39 E-value=1.1e+02 Score=17.89 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=11.7
Q ss_pred HHHhHHHHHHHHHHHH
Q psy1232 16 LEKSKHLQDQLRDLRT 31 (67)
Q Consensus 16 ~eksk~Lq~qL~~L~~ 31 (67)
|...++||.||..|-.
T Consensus 56 mdvkehlqkqldalva 71 (80)
T 2wy7_Q 56 MDVKEHLQKQLDALVA 71 (80)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 3455799999988853
No 64
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=20.36 E-value=1.7e+02 Score=18.33 Aligned_cols=20 Identities=25% Similarity=0.076 Sum_probs=8.8
Q ss_pred hHHHHHHHHHHHHHHHHhhh
Q psy1232 19 SKHLQDQLRDLRTEIEVLKV 38 (67)
Q Consensus 19 sk~Lq~qL~~L~~El~~lk~ 38 (67)
...++.++..+..+++.++.
T Consensus 98 l~~~~~k~e~~~~e~~~l~~ 117 (138)
T 3hnw_A 98 LIAAQIKAESSAKEIKELKS 117 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
Done!