RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1232
(67 letters)
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 43.2 bits (102), Expect = 9e-07
Identities = 27/57 (47%), Positives = 40/57 (70%)
Query: 9 EKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRK 65
E+ERV Y EK++ LQ QL+ L++E+ + K++ D+LHEE VR G +KY TLR+
Sbjct: 172 EEERVTYAEKNERLQTQLQALKSELAAARDESKETANDILHEENVRAGRDKYKTLRQ 228
>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB;
Provisional.
Length = 475
Score = 31.3 bits (71), Expect = 0.017
Identities = 12/60 (20%), Positives = 25/60 (41%), Gaps = 9/60 (15%)
Query: 17 EKSKHLQDQLRDLRTEIEVL---------KVGEKQSELDLLHEEQVRLGENKYSTLRKPA 67
+ +Q Q ++R E++VL ++ + + L E+ LG N + +P
Sbjct: 76 VTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPVTATGEPV 135
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 28.0 bits (63), Expect = 0.25
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 7 EIEKERVEYLEKSKHLQDQLRDLRTEIEVLK 37
+IEKE E E+ L++++++L EIE L+
Sbjct: 97 KIEKEIKELEEEISELENEIKELEQEIERLE 127
>gnl|CDD|130673 TIGR01612, 235kDa-fam, reticulocyte binding/rhoptry protein. This
model represents a group of paralogous families in
plasmodium species alternately annotated as reticulocyte
binding protein, 235-kDa family protein and rhoptry
protein. Rhoptry protein is localized on the cell
surface and is extremely large (although apparently
lacking in repeat structure) and is important for the
process of invasion of the RBCs by the parasite. These
proteins are found in P. falciparum, P. vivax and P.
yoelii.
Length = 2757
Score = 26.2 bits (57), Expect = 1.3
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 2 RRLSLEIEKERVEYLEKSKHLQDQLRDL 29
++L EI+KE E E S HL+ +++DL
Sbjct: 557 KKLIHEIKKELEEENEDSIHLEKEIKDL 584
>gnl|CDD|236973 PRK11767, PRK11767, SpoVR family protein; Provisional.
Length = 498
Score = 25.6 bits (57), Expect = 2.0
Identities = 13/31 (41%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 2 RRLSLEIEKERVEYLEKSKHLQDQLRDL-RT 31
+++SL+ EK R + E+ ++LQ Q+ DL RT
Sbjct: 183 QKISLQEEKARQK--EREEYLQSQVNDLWRT 211
>gnl|CDD|150302 pfam09590, Env-gp36, Lentivirus surface glycoprotein. This
protein is found in feline immunodeficiency retrovirus.
It represents the surface glycoprotein which is found
in the polyprotein C-terminal to the Env protein.
Length = 591
Score = 25.7 bits (56), Expect = 2.1
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 9 EKERVEYLEKSKHLQDQLRDLRTEIEVLKVGE 40
E+E+ EY LQ +L++L+ EI K+ E
Sbjct: 45 EQEKQEY---CVILQPKLQELKGEITEGKLHE 73
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar
sequences, are present in this CD.
Length = 484
Score = 25.4 bits (56), Expect = 2.1
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 11 ERVEYLEKSKHLQDQLRDLRTEIEVLKVG 39
ER E L+K L ++ RDL IE L G
Sbjct: 69 ERGELLDKLADLVEKNRDLLAAIEALDSG 97
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 25.3 bits (55), Expect = 3.2
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 4 LSLEIEKERVEYLEKSKHLQDQLRD 28
L +E EKER +++K LQ QLRD
Sbjct: 1167 LKVEREKERRYLRDENKSLQAQLRD 1191
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 25.1 bits (56), Expect = 3.3
Identities = 15/48 (31%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
Query: 7 EIEKERVEYLEKSKH-LQDQLRDLRTEIEVLKVGEKQSELDLLHEEQV 53
E ++E LEK + L+ + ++L + + L+ +K+ EL+ L EEQ+
Sbjct: 96 ENLDRKLELLEKREEELEKKEKELEQKQQELE--KKEEELEELIEEQL 141
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 24.9 bits (55), Expect = 3.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 7 EIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLL 48
+ K E L K + L ++L++L E+E LK +EL L
Sbjct: 722 SLLKVPPELLPKVERLLEELKELEKELERLKKKLAAAELADL 763
>gnl|CDD|130335 TIGR01268, Phe4hydrox_tetr, phenylalanine-4-hydroxylase, tetrameric
form. This model describes the larger, tetrameric form
of phenylalanine-4-hydroxylase, as found in metazoans.
The enzyme irreversibly converts phenylalanine to
tryosine and is known to be the rate-limiting step in
phenylalanine catabolism in some systems. It is closely
related to metazoan tyrosine 3-monooxygenase and
tryptophan 5-monoxygenase, and more distantly to
monomeric phenylalanine-4-hydroxylases of some
Gram-negative bacteria. The member of this family from
Drosophila has been described as having both
phenylalanine-4-hydroxylase and tryptophan
5-monoxygenase activity (PMID:1371286). However, a
Drosophila member of the tryptophan 5-monoxygenase clade
has subsequently been discovered.
Length = 436
Score = 24.8 bits (54), Expect = 4.0
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 11 ERVEYLEKSKHLQDQLRDLRTEIEVLK 37
+RVE L+K LQ D+R+EI +L+
Sbjct: 403 QRVEILDKKAQLQRLADDIRSEISILQ 429
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 24.7 bits (55), Expect = 4.1
Identities = 10/45 (22%), Positives = 20/45 (44%)
Query: 16 LEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKY 60
E+ + L ++L++L E+E LK + L + + K
Sbjct: 718 PERVEALLEELKELEKELEQLKAKLAAAAAGDLLAQAKEVNGVKV 762
>gnl|CDD|218307 pfam04880, NUDE_C, NUDE protein, C-terminal conserved region.
This family represents the C-terminal conserved region
of the NUDE proteins. NUDE proteins are involved in
nuclear migration.
Length = 166
Score = 24.4 bits (52), Expect = 5.0
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 2 RRLSLEIE-KERVEYLEKSKHLQDQLRDLRTEIEV 35
R LE+E E+ +++ L+D+LRDL+ E+ V
Sbjct: 15 RNALLEMEYDEKESLRIENQRLRDELRDLKQELIV 49
>gnl|CDD|235945 PRK07139, PRK07139, amidase; Provisional.
Length = 439
Score = 24.6 bits (54), Expect = 5.1
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 6 LEIEKERVEYLEKS-KHLQDQLRDLRTEIEVLKVGEK 41
L+ KE EY+ K K L + L+ E+E +K+ EK
Sbjct: 224 LDCFKELEEYVAKKYKKLINILKSENIEVEKIKIDEK 260
>gnl|CDD|106966 PHA00657, PHA00657, crystallin beta/gamma motif-containing protein.
Length = 2052
Score = 24.4 bits (52), Expect = 5.2
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 6 LEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSE 44
L+ E E E +++Q Q +LR E+E +GE+Q +
Sbjct: 496 LKTEPEGFSRAEAQQYMQSQAEELRAEVE-RALGEQQGD 533
>gnl|CDD|238820 cd01642, Arch_FBPase_2, Putative fructose-1,6-bisphosphatase or
related enzymes of inositol monophosphatase family.
These are Mg++ dependent phosphatases. Members in this
family may have fructose-1,6-bisphosphatase and/or
inositol-monophosphatase activity.
Fructose-1,6-bisphosphatase catalyzes the hydrolysis of
fructose-1,6-biphosphate into fructose-6-phosphate and
is critical in gluconeogenesis pathway.
Length = 244
Score = 23.9 bits (52), Expect = 6.8
Identities = 11/51 (21%), Positives = 19/51 (37%), Gaps = 6/51 (11%)
Query: 1 MRRLSLEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEE 51
M + +I KE + L ++ R ++ G+ DL EE
Sbjct: 1 MLEVLEKITKEIILL------LNEKNRQGLVKLIRGAGGDVTRVADLKAEE 45
>gnl|CDD|234400 TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This
model represents the N-terminal domain or EccCa subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 661
Score = 24.2 bits (53), Expect = 7.1
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 9/36 (25%)
Query: 7 EIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQ 42
E++++R +YL +L DQLR EV + Q
Sbjct: 63 ELDEDRRDYLR---YL-DQLRR-----EVRETAAAQ 89
>gnl|CDD|204135 pfam09104, BRCA-2_OB3, BRCA2,
oligonucleotide/oligosaccharide-binding, domain 3.
Members of this family assume an OB fold, which consists
of a highly curved five-stranded beta-sheet that closes
on itself to form a beta-barrel. OB3 has a pronounced
groove formed by one face of the curved sheet and is
demarcated by two loops, one between beta 1 and beta 2
and another between beta 4 and beta 5, which allows for
strong ssDNA binding.
Length = 143
Score = 24.0 bits (52), Expect = 7.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 18 KSKHLQDQLRDLRTEIEVLKVGEKQSELDLLH 49
K KH Q++ LR IE + K++E L H
Sbjct: 104 KEKHFQERFNSLRATIENIDTFYKEAEKKLAH 135
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.131 0.336
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,321,083
Number of extensions: 252099
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 127
Length of query: 67
Length of database: 10,937,602
Length adjustment: 38
Effective length of query: 29
Effective length of database: 9,252,150
Effective search space: 268312350
Effective search space used: 268312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.2 bits)