RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1232
(67 letters)
>1ef1_C Moesin; membrane, FERM domain, tail domain, membrane protein;
1.90A {Homo sapiens} SCOP: a.137.5.1
Length = 90
Score = 58.1 bits (140), Expect = 2e-13
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 7 EIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYSTLRK 65
E+ER EK++ +Q L+ L +E+ + K++ D++H E +RLG +KY TLR+
Sbjct: 16 RSEEERTTEAEKNERVQKHLKALTSELANARDESKKTANDMIHAENMRLGRDKYKTLRQ 74
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin
binding, masking, regulation, SELF-inhibition, cell A
membrane protein; 2.10A {Spodoptera frugiperda} PDB:
2i1k_A 1e5w_A
Length = 575
Score = 54.2 bits (129), Expect = 9e-11
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 3 RLSLEIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRLGENKYST 62
++ +R E+++ L +QL+ L+ ++ K++ +D +H E VR G +KY T
Sbjct: 497 DDLVDPVADRRTLAERNERLHNQLKALKQDLARSCDETKETAMDKIHRENVRQGRDKYKT 556
Query: 63 LRK 65
LR+
Sbjct: 557 LRE 559
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L
structural genomics, center for structural genomics of
INFE diseases; 2.70A {Salmonella enterica subsp}
Length = 175
Score = 27.1 bits (59), Expect = 0.35
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 7 EIEKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEK--QSELDLLHEEQVRL 55
+K +Y ++ L+ QL R E L ++++ + +E L
Sbjct: 75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESL 125
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase, nucleotide-binding; 3.20A {Archaeoglobus
fulgidus}
Length = 171
Score = 24.5 bits (54), Expect = 2.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 14 EYLEKSKHLQDQLRDLRTEIEVLK 37
+ + + ++ +D R EIE LK
Sbjct: 29 KLPKTVERFFEEWKDQRKEIERLK 52
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.4 bits (52), Expect = 3.3
Identities = 7/44 (15%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 20 KHLQDQLRDLRTEIEV---LKVGEKQSELDLLHEEQVRLGENKY 60
K +QD + + ++ E+ + + S L + E
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMV 79
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 24.5 bits (52), Expect = 3.3
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 16/36 (44%)
Query: 9 EKERVEYLEKSKHLQDQLR----D------LRTEIE 34
EK+ ++ L+ S L+ D ++ +E
Sbjct: 18 EKQALKKLQAS------LKLYADDSAPALAIKATME 47
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch
recognition, mismatched unpaired DNA binding protein-DNA
complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B*
3thy_B* 3thz_B*
Length = 918
Score = 24.1 bits (53), Expect = 4.3
Identities = 5/32 (15%), Positives = 14/32 (43%)
Query: 8 IEKERVEYLEKSKHLQDQLRDLRTEIEVLKVG 39
I+K + E ++ L+++R ++
Sbjct: 496 IKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQ 527
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
{Bacillus subtilis}
Length = 307
Score = 23.7 bits (52), Expect = 5.2
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 10/52 (19%)
Query: 22 LQDQLRDLRTEIE-----VLKVGEKQ----SELDLLHEEQVRLGENKYSTLR 64
L D + +TE + +LK Q L+ L+ ++ E + +
Sbjct: 250 LVDVIGGRQTEADAIIGYLLKEASLQGLDAVHLEFLY-GSIKALERNTNKVE 300
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein,
structural genomics, PSI-biology, protei structure
initiative; 3.10A {Escherichia coli}
Length = 666
Score = 23.7 bits (51), Expect = 6.8
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 33 IEVLKVGEKQSELDLLHEEQVRLG 56
+V V EK SE+ ++ +E RL
Sbjct: 191 HKVYLVIEKMSEIAIVLDEAERLN 214
>3iyk_A VP5; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Length = 526
Score = 23.4 bits (50), Expect = 7.6
Identities = 11/60 (18%), Positives = 24/60 (40%), Gaps = 1/60 (1%)
Query: 7 EIEKERVEYLEKSKHLQDQLRDLRTEIE-VLKVGEKQSELDLLHEEQVRLGENKYSTLRK 65
E+E E+ L + K+ E+E V ++ ++ E+Q + ++ K
Sbjct: 101 ELEDEQRNELVRLKYNDKIKEKFGKELEEVYNFMNGEANAEIEDEKQFDILNKAVTSYNK 160
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 23.5 bits (51), Expect = 7.7
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 9 EKERVEYLEKSKHLQDQLRDLRTEIEVLKVGEKQSELDLLHEEQVRL 55
E+E + LQ+++ LR E+ + Q+E + E +
Sbjct: 976 EEEAKNATNRVLSLQEEIAKLRKELH-----QTQTEKKTIEEWADKY 1017
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.131 0.336
Gapped
Lambda K H
0.267 0.0412 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 935,952
Number of extensions: 42536
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 58
Length of query: 67
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 29
Effective length of database: 5,640,795
Effective search space: 163583055
Effective search space used: 163583055
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 51 (24.2 bits)