BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12320
(175 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VQR|A Chain A, Crystal Structure Of A Phosphonate Monoester Hydrolase
From Rhizobium Leguminosarum: A New Member Of The
Alkaline Phosphatase Superfamily
Length = 514
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 10/78 (12%)
Query: 43 RKPNIILFLTDDQDVEL--------GSLNFMK--KTLRFLRDGGAEFRHAYTTTPMCCPS 92
RK N++L + D + G ++F+K R R+G H T P C P+
Sbjct: 1 RKKNVLLIVVDQWRADFVPHVLRADGKIDFLKTPNLDRLCREGVTFRNHVTTCVPXCGPA 60
Query: 93 RSSLLTGLYMHNHHVYTN 110
R+SLLTGLY+ NH N
Sbjct: 61 RASLLTGLYLMNHRAVQN 78
>pdb|2W8S|A Chain A, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 513
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 70 RFLRDGGAEFRHAYTTTPMCCPSRSSLLTGLYMHNHHVYTN 110
R R+G H T P C P+R+SLLTGLY+ NH N
Sbjct: 37 RLCREGLTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQN 77
>pdb|2W8S|B Chain B, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|C Chain C, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
pdb|2W8S|D Chain D, Crystal Structure Of A Catalytically Promiscuous
Phosphonate Monoester Hydrolase From Burkholderia
Caryophylli
Length = 514
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 23/41 (56%)
Query: 70 RFLRDGGAEFRHAYTTTPMCCPSRSSLLTGLYMHNHHVYTN 110
R R+G H T P C P+R+SLLTGLY+ NH N
Sbjct: 38 RLCREGLTFRNHVTTCVPXCGPARASLLTGLYLMNHRAVQN 78
>pdb|3ED4|A Chain A, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|B Chain B, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|C Chain C, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
pdb|3ED4|D Chain D, Crystal Structure Of Putative Arylsulfatase From
Escherichia Coli
Length = 502
Score = 35.0 bits (79), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 4/74 (5%)
Query: 30 SGQQSFPGYMNQERKPNIILFLTDD---QDVELGSLNFMKK-TLRFLRDGGAEFRHAYTT 85
+G P + ++PN+++ + DD D+ +K + L G +F Y
Sbjct: 13 TGNAFSPALAAEAKQPNLVIIMADDLGYGDLATYGHQIVKTPNIDRLAQEGVKFTDYYAP 72
Query: 86 TPMCCPSRSSLLTG 99
P+ PSR+ LLTG
Sbjct: 73 APLSSPSRAGLLTG 86
>pdb|1E2S|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69a
Length = 489
Score = 34.7 bits (78), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 43 RKPNIILFLTDDQDV-ELGSLNFMKKT---LRFLRDGGAEFRHAYTTTPMCCPSRSSLLT 98
R PNI+L DD +LG T L L GG F Y + PSR++LLT
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLATPSRAALLT 60
Query: 99 GLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRTDTS 142
G +Y SS E + A L+ GY T +
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEE-VTVAEVLAARGYLTGMA 103
>pdb|1P49|A Chain A, Structure Of Human Placental EstroneDHEA SULFATASE
Length = 562
Score = 34.3 bits (77), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 44 KPNIILFLTDDQDVE----LGSLNFMKKTLRFLRDGGAEFRHAYTTTPMCCPSRSSLLTG 99
+PNIIL + DD + G+ + L GG + +P+ PSR++ +TG
Sbjct: 5 RPNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLXTPSRAAFMTG 64
Query: 100 LY 101
Y
Sbjct: 65 RY 66
>pdb|1E1Z|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s
Length = 489
Score = 34.3 bits (77), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 43 RKPNIILFLTDDQDV-ELGSLNFMKKT---LRFLRDGGAEFRHAYTTTPMCCPSRSSLLT 98
R PNI+L DD +LG T L L GG F Y + PSR++LLT
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLSTPSRAALLT 60
Query: 99 GLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRTDTS 142
G +Y SS E + A L+ GY T +
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEE-VTVAEVLAARGYLTGMA 103
>pdb|1E3C|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant C69s Soaked
In Synthetic Substrate
Length = 489
Score = 33.9 bits (76), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 43 RKPNIILFLTDDQDV-ELGSLNFMKKT---LRFLRDGGAEFRHAYTTTPMCCPSRSSLLT 98
R PNI+L DD +LG T L L GG F Y + PSR++LLT
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLSTPSRAALLT 60
Query: 99 GLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRTDTS 142
G +Y SS E + A L+ GY T +
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEE-VTVAEVLAARGYLTGMA 103
>pdb|1E33|P Chain P, Crystal Structure Of An Arylsulfatase A Mutant P426l
Length = 489
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 43 RKPNIILFLTDDQDV-ELGSLNFMKKT---LRFLRDGGAEFRHAYTTTPMCCPSRSSLLT 98
R PNI+L DD +LG T L L GG F Y + PSR++LLT
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLT 60
Query: 99 GLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRTDTS 142
G +Y SS E + A L+ GY T +
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEE-VTVAEVLAARGYLTGMA 103
>pdb|1N2K|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1N2L|A Chain A, Crystal Structure Of A Covalent Intermediate Of Endogenous
Human Arylsulfatase A
pdb|1AUK|A Chain A, Human Arylsulfatase A
Length = 489
Score = 33.9 bits (76), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 41/104 (39%), Gaps = 5/104 (4%)
Query: 43 RKPNIILFLTDDQDV-ELGSLNFMKKT---LRFLRDGGAEFRHAYTTTPMCCPSRSSLLT 98
R PNI+L DD +LG T L L GG F Y + PSR++LLT
Sbjct: 1 RPPNIVLIFADDLGYGDLGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAALLT 60
Query: 99 GLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRTDTS 142
G +Y SS E + A L+ GY T +
Sbjct: 61 GRLPVRMGMYPGVLVPSSRGGLPLEE-VTVAEVLAARGYLTGMA 103
>pdb|4FDI|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDI|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A
pdb|4FDJ|A Chain A, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
pdb|4FDJ|B Chain B, The Molecular Basis Of Mucopolysaccharidosis Iv A, Complex
With Galnac
Length = 502
Score = 33.5 bits (75), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 43 RKPNIILFLTDDQDV-ELGSLNFMKKTLRFLRDGGAE---FRHAYTTTPMCCPSRSSLLT 98
+ PNI+L L DD +LG + L AE F + Y+ P+ PSR++LLT
Sbjct: 3 QPPNILLLLMDDMGWGDLGVYGEPSRETPNLDRMAAEGLLFPNFYSANPLXSPSRAALLT 62
Query: 99 GLYMHNHHVYTNN 111
G + YT N
Sbjct: 63 GRLPIRNGFYTTN 75
>pdb|1FSU|A Chain A, 4-Sulfatase (Human)
Length = 492
Score = 33.5 bits (75), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 43 RKPNIILFLTDD---QDVELGSLNFMKKTLRFLRDGGAEFRHAYTTTPMCCPSRSSLLTG 99
R P+++ L DD DV L L GG + Y T P+ PSRS LLTG
Sbjct: 2 RPPHLVFLLADDLGWNDVGFHGSRIRTPHLDALAAGGVLLDN-YYTQPLXTPSRSQLLTG 60
Query: 100 LY 101
Y
Sbjct: 61 RY 62
>pdb|2QZU|A Chain A, Crystal Structure Of The Putative Sulfatase Yidj From
Bacteroides Fragilis. Northeast Structural Genomics
Consortium Target Bfr123
Length = 491
Score = 32.3 bits (72), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/108 (25%), Positives = 44/108 (40%), Gaps = 7/108 (6%)
Query: 37 GYMNQERKP--NIILFLTD----DQDVELGSLNFMKKTLRFLRDGGAEFRHAYTTTPMCC 90
G QE++P N++ D D +G L L G F +A ++ P+
Sbjct: 18 GLQAQEKQPTPNLVFIXADQYRGDAIGCIGKEPVKTPHLDKLASEGINFTNAISSYPVSS 77
Query: 91 PSRSSLLTGLYMHNHHVYTN-NDNCSSHSWQANHEPRSFATYLSNSGY 137
P+R L TG Y V N N + + + + R ++ L + GY
Sbjct: 78 PARGXLXTGXYPIGSKVTGNCNSETAPYGVELSQNARCWSDVLKDQGY 125
>pdb|3B5Q|A Chain A, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
pdb|3B5Q|B Chain B, Crystal Structure Of A Putative Sulfatase (Np_810509.1)
From Bacteroides Thetaiotaomicron Vpi-5482 At 2.40 A
Resolution
Length = 482
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 76 GAEFRHAYTTTPMCCPSRSSLLTGLYMHNHHVYTNN 111
G F +AY P+ PSR++L +G H +V +N+
Sbjct: 52 GVIFSNAYVGCPLSQPSRAALWSGXXPHQTNVRSNS 87
>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
Adomet
Length = 272
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 13/45 (28%)
Query: 46 NIILFLTDDQDVELGSL-------------NFMKKTLRFLRDGGA 77
N+I L D++DVEL + F+ KT FL+D G
Sbjct: 170 NVIPILADNRDVELKDVADRVIMGYVHKTHKFLDKTFEFLKDRGV 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,082,244
Number of Sequences: 62578
Number of extensions: 193783
Number of successful extensions: 378
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 369
Number of HSP's gapped (non-prelim): 17
length of query: 175
length of database: 14,973,337
effective HSP length: 92
effective length of query: 83
effective length of database: 9,216,161
effective search space: 764941363
effective search space used: 764941363
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)