RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12320
(175 letters)
>gnl|CDD|216172 pfam00884, Sulfatase, Sulfatase.
Length = 332
Score = 67.5 bits (165), Expect = 7e-14
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 10/122 (8%)
Query: 45 PNIILFLTDDQ-DVELGSLNFMKKTLRFL---RDGGAEFRHAYTTTPMCCPSRSSLLTGL 100
PN++L L + +LG + + T FL + G F + Y+ + PSR +LLTGL
Sbjct: 1 PNVVLVLGESLRAPDLGLYGYPRPTTPFLDRLAEEGLLFSNFYSGGTLTAPSRFALLTGL 60
Query: 101 YMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRTDTSQNLVRSYVSSTNPMELLP 160
HN + S L +GY T S+ + + + L
Sbjct: 61 PPHNFGSGVSTPIGLP------RTEPSLPDLLKRAGYNTGAIGKWHLSWYNRQSVYKNLG 114
Query: 161 FD 162
FD
Sbjct: 115 FD 116
>gnl|CDD|225661 COG3119, AslA, Arylsulfatase A and related enzymes [Inorganic ion
transport and metabolism].
Length = 475
Score = 66.3 bits (162), Expect = 3e-13
Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 12/106 (11%)
Query: 42 ERKPNIILFLTDDQ-----DVELGSLNFMKKTLRFLRDGGAEFRHAYTTTPMCCPSRSSL 96
++PNI++ + DD G + + L G F +AYTT+P C PSR++L
Sbjct: 2 AKRPNILIIMADDLGYGDLGAYGGPVVGPTPNIDRLAAEGVRFTNAYTTSPCCGPSRAAL 61
Query: 97 LTGLYMHNHHVYTNNDNCSSHSWQANHEPRSFAT---YLSNSGYRT 139
LTG Y V N + P T L +GY T
Sbjct: 62 LTGRYPFRTGVGGNAE----PPGYPGGLPDEVPTLAELLKEAGYYT 103
>gnl|CDD|237491 PRK13759, PRK13759, arylsulfatase; Provisional.
Length = 485
Score = 47.4 bits (113), Expect = 9e-07
Identities = 34/106 (32%), Positives = 47/106 (44%), Gaps = 12/106 (11%)
Query: 39 MNQERKPNIILFLTDDQDVELGSLNFMK----KTLRFLRDGGAEFRHAYTTTPMCCPSRS 94
M Q +KPNIIL + D + N K L L G F +AY+ P C P+R+
Sbjct: 1 MVQTKKPNIILIMVDQMRGDCLGCNGNKAVETPNLDMLASEGYNFENAYSAVPSCTPARA 60
Query: 95 SLLTGLYMHNHHVYTNNDNCSSHSWQANHE-PRSFATYLSNSGYRT 139
+LLTGL +H D W + P+ F ++GY T
Sbjct: 61 ALLTGLSQWHHGRVGYGDVV---PWNYKNTLPQEFR----DAGYYT 99
>gnl|CDD|234202 TIGR03417, chol_sulfatase, choline-sulfatase.
Length = 500
Score = 46.6 bits (111), Expect = 1e-06
Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 12/101 (11%)
Query: 44 KPNIILFLTDDQDVEL----GSLNFMKK-TLRFLRDGGAEFRHAYTTTPMCCPSRSSLLT 98
+PNI++ + D + L G ++ L+ L F +AY +P+C PSR+S ++
Sbjct: 2 RPNILIIMADQLNGTLLPDYGPARWLHAPNLKRLAARSVVFDNAYCASPLCAPSRASFMS 61
Query: 99 GLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRT 139
G Y N +S + ++A YL +GYRT
Sbjct: 62 GQLPSRTGAYDNAAEFAS-------DIPTYAHYLRRAGYRT 95
>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
pyrophosphatase. This family consists of
phosphodiesterases, including human plasma-cell membrane
glycoprotein PC-1 / alkaline phosphodiesterase i /
nucleotide pyrophosphatase (nppase). These enzymes
catalyze the cleavage of phosphodiester and
phosphosulfate bonds in NAD, deoxynucleotides and
nucleotide sugars. Also in this family is ATX an
autotaxin, tumour cell motility-stimulating protein
which exhibits type I phosphodiesterases activity. The
alignment encompasses the active site. Also present with
in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Length = 342
Score = 34.3 bits (79), Expect = 0.020
Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 10/82 (12%)
Query: 53 DDQDVELGSLNFMKKTLRFLRDGGAEFRHAYTTTP-MCCPSRSSLLTGLYMHNHHVYTNN 111
D D G + L G + P + P+ +++TGLY +H + N
Sbjct: 12 DYLDRLAGLTPNLAA----LAKEGVSAPYLTPVFPTLTFPNHYTIVTGLYPGSHGIVGNT 67
Query: 112 -----DNCSSHSWQANHEPRSF 128
S W E
Sbjct: 68 WYDPKRLKESTFWDQLPESGDG 89
>gnl|CDD|217736 pfam03799, FtsQ, Cell division protein FtsQ. FtsQ is one of
several cell division proteins. FtsQ interacts with
other Fts proteins, reviewed in. The precise function
of FtsQ is unknown.
Length = 115
Score = 29.2 bits (66), Expect = 0.51
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 47 IILFLTDDQDVELGSLNFMKKTLRFLR 73
L L D +V LG + K+ RF
Sbjct: 72 WDLVLDDGIEVRLGREDLAKRLARFPA 98
>gnl|CDD|217350 pfam03067, Chitin_bind_3, Chitin binding domain. This domain is
found associated with a wide variety of cellulose
binding domain. This domain however is a chitin binding
domain. This domain is found in isolation in baculoviral
spheroidins and spindolins, protein of unknown function.
Length = 181
Score = 28.1 bits (63), Expect = 1.6
Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 8/55 (14%)
Query: 121 ANHEPRSFATYLSNSGYRTDTSQNLVRSYVSSTNPMELLPFDIDLPTTKTPLLPS 175
A H+ F Y++ G+ D +Q L +EL+PF P P+
Sbjct: 95 APHKTSYFEYYITKPGW--DPNQPLTWD------DLELIPFCTVDGNGADPGPPA 141
>gnl|CDD|221962 pfam13182, DUF4007, Protein of unknown function (DUF4007). This
family of proteins is functionally uncharacterized.
This family of proteins is found in bacteria and
archaea. Proteins in this family are typically between
284 and 326 amino acids in length. This domain is found
associated with pfam01507 in some proteins, suggesting
a functional link.
Length = 285
Score = 28.0 bits (63), Expect = 2.5
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 11/58 (18%)
Query: 28 QLSGQQSFP--------GYMNQERKPNIILFLTDDQDVELGSLNFMKKTLRF-LRDGG 76
+ +G ++F G ++ P + FL +D VELG M K +R+ LR G
Sbjct: 1 KFAGHETFGLREGWLKKGLDAVKKNPKV--FLEEDAIVELGVGKNMVKAIRYWLRATG 56
>gnl|CDD|215182 PLN02321, PLN02321, 2-isopropylmalate synthase.
Length = 632
Score = 28.0 bits (62), Expect = 2.9
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 110 NNDNCSSHSWQANHEPRSFATYLSNSGYRTDTSQNLVRSYVSSTNPM 156
N S+H+ R+F S SG D + VR+YVS+ N M
Sbjct: 567 ENSYSSTHAQTGESVQRTF----SGSGADMDIVVSSVRAYVSALNKM 609
>gnl|CDD|197209 cd09110, PLDc_CLS_1, Catalytic domain, repeat 1, of bacterial
cardiolipin synthase and similar proteins. Catalytic
domain, repeat 1, of bacterial cardiolipin (CL)
synthase and a few homologs found in eukaryotes and
archaea. Bacterial CL synthases catalyze the reversible
phosphatidyl group transfer between two
phosphatidylglycerol molecules to form CL and glycerol.
The monomer of bacterial CL synthase consists of two
catalytic domains. Each catalytic domain contains one
copy of the conserved HKD motif (H-x-K-x(4)-D, where x
represents any amino acid residue) that characterizes
the phospholipase D (PLD) superfamily. Two HKD motifs
from two domains form a single active site involved in
phosphatidyl group transfer. Bacterial CL synthases can
be stimulated by phosphate and inhibited by CL, the
product of the reaction, and by phosphatidate.
Phosphate stimulation may be unique to enzymes with CL
synthase activity belonging to the PLD superfamily.
Like other PLD enzymes, bacterial CL synthases utilize
a common two-step ping-pong catalytic mechanism
involving an enzyme-substrate intermediate to cleave
phosphodiester bonds. The two histidine residues from
the two HKD motifs play key roles in the catalysis.
Upon substrate binding, a histidine residue from one
HKD motif could function as the nucleophile, attacking
the phosphodiester bond to create a covalent
phosphohistidine intermediate, while the other
histidine residue from the second HKD motif could serve
as a general acid, stabilizing the leaving group.
Length = 154
Score = 27.1 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 59 LGSLNFMKKTLRFLRDGGAEFR 80
GSL ++ LR LR+ G E R
Sbjct: 58 FGSLGLSRRFLRELREAGVEVR 79
>gnl|CDD|225971 COG3437, COG3437, Response regulator containing a CheY-like
receiver domain and an HD-GYP domain [Transcription /
Signal transduction mechanisms].
Length = 360
Score = 26.6 bits (59), Expect = 7.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 33 QSFPGYMNQERKPNIILFLTDDQDVELGSLNFMKKTLR 70
QS G + K + L DD+ +L +++ LR
Sbjct: 3 QSMQGKNEPDEKLTV--LLVDDEPD---NLEALRQLLR 35
>gnl|CDD|176532 cd08590, PI-PLCc_Rv2075c_like, Catalytic domain of uncharacterized
Mycobacterium tuberculosis Rv2075c-like proteins. This
subfamily corresponds to the catalytic domain present in
uncharacterized Mycobacterium tuberculosis Rv2075c and
its homologs. Members in this family are more closely
related to the Streptomyces antibioticus
phosphatidylinositol-specific phospholipase
C1(SaPLC1)-like proteins rather than the typical
bacterial phosphatidylinositol-specific phospholipase C
(PI-PLC, EC 4.6.1.13), which participate in
Ca2+-independent PI metabolism, hydrolyzing the membrane
lipid phosphatidylinositol (PI) to produce
phosphorylated myo-inositol and diacylglycerol (DAG). In
contrast, SaPLC1-like proteins have two Ca2+-chelating
amino acid substitutions which convert them to
metal-dependent bacterial PI-PLC. Rv2075c and its
homologs have the same amino acid substitutions as well,
which might suggest they have metal-dependent PI-PLC
activity.
Length = 267
Score = 26.6 bits (59), Expect = 8.3
Identities = 13/74 (17%), Positives = 18/74 (24%), Gaps = 12/74 (16%)
Query: 104 NHHVY-TNNDNCSSHSWQANHEPRSFATYLSNSGYR-------TDTSQ-NLVRSYVSSTN 154
V CS N + + S +R + +LVR Y STN
Sbjct: 162 GKQVVLATGGGCSGAQGMYNRKEFAD---TQPSNFRPYPECAFAMGNNTSLVRVYEDSTN 218
Query: 155 PMELLPFDIDLPTT 168
Sbjct: 219 YSSAAGDPGGPFKN 232
>gnl|CDD|222890 PHA02584, 34, long tail fiber, proximal subunit; Provisional.
Length = 1229
Score = 26.6 bits (59), Expect = 9.5
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
Query: 92 SRSSLLTGLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRTDTSQNLVRSYVS 151
S S +T Y N ++ N ++A +E RS + +G++ + + R +
Sbjct: 168 SASVRITHPYSTNVFIFNGN---LWQVYEAGYERRSVYVEPTGAGFQAQSGDTVFRR--T 222
Query: 152 STNPMEL-LP 160
S + L LP
Sbjct: 223 SGGTITLTLP 232
>gnl|CDD|224483 COG1567, COG1567, CRISPR system related protein, RAMP superfamily
[Defense mechanisms].
Length = 313
Score = 26.3 bits (58), Expect = 9.5
Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)
Query: 13 LNVDSSDHRRLKVKKQLSGQQSFPGYMNQERKPNI---ILFLTDDQDVELGSLNFMKKTL 69
+ VDS + K Y + + FL D D LG ++K +
Sbjct: 131 IGVDSLSKKAKKAIHNGRIDADSELYFVGYIRFKENSGLWFLADGSDEYLGFEKRLEKAI 190
Query: 70 RFLRDGG 76
R L D G
Sbjct: 191 RLLEDFG 197
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.129 0.382
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,269,688
Number of extensions: 694654
Number of successful extensions: 504
Number of sequences better than 10.0: 1
Number of HSP's gapped: 499
Number of HSP's successfully gapped: 17
Length of query: 175
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 85
Effective length of database: 6,945,742
Effective search space: 590388070
Effective search space used: 590388070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)