RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12320
(175 letters)
>3b5q_A Putative sulfatase YIDJ; NP_810509.1, structural genomics, joint
center for structural genomics, JCSG; HET: EPE; 2.40A
{Bacteroides thetaiotaomicron vpi-5482}
Length = 482
Score = 97.4 bits (243), Expect = 2e-24
Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 42 ERKPNIILFLTDDQDVELGSL--NFMKKT--LRFLRDGGAEFRHAYTTTPMCCPSRSSLL 97
+ KPN ++ D + T + + G F +AY P+ PSR++L
Sbjct: 14 QEKPNFLIIQCDHLTQRVVGAYGQTQGCTLPIDEVASRGVIFSNAYVGCPLSQPSRAALW 73
Query: 98 TGLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRT 139
+G+ H +V +N+ + N + + S SGY
Sbjct: 74 SGMMPHQTNVRSNSSEPVNTRLPENV--PTLGSLFSESGYEA 113
>2vqr_A Putative sulfatase; phosphonate monoester hydrolase, hydrolase,
plasmid, formylglycine, phosphodiesterase; 1.42A
{Rhizobium leguminosarum BV} PDB: 2w8s_A
Length = 543
Score = 85.9 bits (213), Expect = 3e-20
Identities = 34/120 (28%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 29 LSGQQSFPGYMNQERKPNIILFLTDDQ--DVELGSLNFMK-----KT--LRFLRDGGAEF 79
+ S PG + RK N++L + D D L KT L L G F
Sbjct: 17 VPNSSSVPGDPSSMRKKNVLLIVVDQWRADFVPHVLRADGKIDFLKTPNLDRLCREGVTF 76
Query: 80 RHAYTTTPMCCPSRSSLLTGLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRT 139
R+ TT P+R+SLLTGLY+ NH N + + L GY
Sbjct: 77 RNHVTTCVPXGPARASLLTGLYLMNHRAVQNTVP-------LDQRHLNLGKALRGVGYDP 129
>2qzu_A Putative sulfatase YIDJ; Q64XZ4_bacfr, arylsulfatase, BFR123, NESG,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacteroides fragilis}
Length = 491
Score = 85.4 bits (212), Expect = 3e-20
Identities = 20/108 (18%), Positives = 45/108 (41%), Gaps = 11/108 (10%)
Query: 40 NQERKPNIILFLTDDQDVELGSLNFMKKTL-------RFLRDGGAEFRHAYTTTPMCCPS 92
++ PN++ + D ++ + K + +G F +A ++ P+ P+
Sbjct: 23 EKQPTPNLVFIMADQYRG--DAIGCIGKEPVKTPHLDKLASEG-INFTNAISSYPVSSPA 79
Query: 93 RSSLLTGLYMHNHHVYTNNDNCSSHSWQA-NHEPRSFATYLSNSGYRT 139
R L+TG+Y V N ++ ++ + R ++ L + GY
Sbjct: 80 RGMLMTGMYPIGSKVTGNCNSETAPYGVELSQNARCWSDVLKDQGYNM 127
>3ed4_A Arylsulfatase; structural genomics, PSI-2, protein structure INI
NEW YORK structural genomix research consortium,
NYSGXRC, transferase; 1.70A {Escherichia coli}
Length = 502
Score = 77.4 bits (191), Expect = 2e-17
Identities = 28/117 (23%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 29 LSGQQSFPGYMNQERKPNIILFLTDDQ---DVE-LGSLNFMKKT--LRFLRDGGAEFRHA 82
+G P + ++PN+++ + DD D+ G KT + L G +F
Sbjct: 12 CTGNAFSPALAAEAKQPNLVIIMADDLGYGDLATYGHQIV--KTPNIDRLAQEGVKFTDY 69
Query: 83 YTTTPMCCPSRSSLLTGLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRT 139
Y P+ PSR+ LLTG + + + + N + A L GY T
Sbjct: 70 YAPAPLSSPSRAGLLTGRMPFRTGIRSWIPSGKDVALGRNEL--TIANLLKAQGYDT 124
>1p49_A Steryl-sulfatase; steroid biosynthesis, steroid sulfatase, estrone
sulfate, dehydroepiandrosterone sulfate, human placental
enzyme; HET: ALS BOG NAG; 2.60A {Homo sapiens} SCOP:
c.76.1.2
Length = 562
Score = 65.9 bits (160), Expect = 2e-13
Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 8/104 (7%)
Query: 44 KPNIILFLTDDQ---DVEL-GSLNFMKKTLRFLRDGGAEFRHAYTTTPMCCPSRSSLLTG 99
+PNIIL + DD D G+ + L GG + +P+ PSR++ +TG
Sbjct: 5 RPNIILVMADDLGIGDPGCYGNKTIRTPNIDRLASGGVKLTQHLAASPLXTPSRAAFMTG 64
Query: 100 LYMHNHHVYTNNDNCS----SHSWQANHEPRSFATYLSNSGYRT 139
Y + + + + S + +FA L + GY T
Sbjct: 65 RYPVRSGMASWSRTGVFLFTASSGGLPTDEITFAKLLKDQGYST 108
>1auk_A Arylsulfatase A; cerebroside-3-sulfate hydrolysis, lysosomal
enzyme, hydrolas; HET: NDG NAG; 2.10A {Homo sapiens}
SCOP: c.76.1.2 PDB: 1n2k_A* 1n2l_A* 1e1z_P* 1e2s_P*
1e3c_P* 1e33_P*
Length = 489
Score = 61.6 bits (150), Expect = 7e-12
Identities = 33/103 (32%), Positives = 40/103 (38%), Gaps = 9/103 (8%)
Query: 43 RKPNIILFLTDDQ---DVELGSLNFMK-KT--LRFLRDGGAEFRHAYTTTPMCCPSRSSL 96
R PNI+L DD D LG T L L GG F Y + PSR++L
Sbjct: 1 RPPNIVLIFADDLGYGD--LGCYGHPSSTTPNLDQLAAGGLRFTDFYVPVSLXTPSRAAL 58
Query: 97 LTGLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRT 139
LTG +Y SS E + A L+ GY T
Sbjct: 59 LTGRLPVRMGMYPGVLVPSSRGGLPLEEV-TVAEVLAARGYLT 100
>1fsu_A N-acetylgalactosamine-4-sulfatase; glycosaminoglycan degradation,
hydrolase, glycopr lysosome; HET: ALS NAG; 2.50A {Homo
sapiens} SCOP: c.76.1.2
Length = 492
Score = 57.8 bits (140), Expect = 1e-10
Identities = 31/102 (30%), Positives = 39/102 (38%), Gaps = 9/102 (8%)
Query: 43 RKPNIILFLTDDQ---DVELGSLNFMKKT--LRFLRDGGAEFRHAYTTTPMCCPSRSSLL 97
R P+++ L DD DV G +T L L GG + YT P+ PSRS LL
Sbjct: 2 RPPHLVFLLADDLGWNDV--GFHGSRIRTPHLDALAAGGVLLDNYYTQ-PLXTPSRSQLL 58
Query: 98 TGLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRT 139
TG Y + S E L +GY T
Sbjct: 59 TGRYQIRTGLQHQIIWPCQPSCVPLDEK-LLPQLLKEAGYTT 99
>1hdh_A Arylsulfatase; hydrolase, formylglycine hydrate; 1.3A {Pseudomonas
aeruginosa} SCOP: c.76.1.2
Length = 536
Score = 55.6 bits (134), Expect = 8e-10
Identities = 24/112 (21%), Positives = 38/112 (33%), Gaps = 21/112 (18%)
Query: 43 RKPNIILFLTDDQ---DVE-LGSL----NFMKKTLRFLRDGGAEFRHAYTTTPMCCPSRS 94
++PN ++ + DD D+ G N L G +T P+RS
Sbjct: 3 KRPNFLVIVADDLGFSDIGAFGGEIATPNLDA-----LAIAGLRLTDFHTA-STXSPTRS 56
Query: 95 SLLTGLYMHNHHVYTNNDNCSSHSWQA-------NHEPRSFATYLSNSGYRT 139
LLTG H + T + + N + L +GY+T
Sbjct: 57 MLLTGTDHHIAGIGTMAEALTPELEGKPGYEGHLNERVVALPELLREAGYQT 108
>2gso_A Phosphodiesterase-nucleotide pyrophosphatase; alpha beta, NPP,
hydrolase; 1.30A {Xanthomonas axonopodis PV} PDB: 2gsn_A
2gsu_A* 2rh6_A*
Length = 393
Score = 35.9 bits (82), Expect = 0.004
Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 68 TLRFLRDGGAEFRHAYTTTP-MCCPSRSSLLTGLYMHNHHVYTNN 111
L L G R + P + P+ +L+TGL +H + N+
Sbjct: 29 NLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLRPDHHGIVHNS 73
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.016
Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 47/158 (29%)
Query: 4 TLTKKSTS-SLNVDSSDHRRLKVKKQLSGQQSFPGYMNQERKPNIILFLTDDQD---VEL 59
TL+ S L V ++ QL Q+ F + + + F DD+ EL
Sbjct: 10 TLSHGSLEHVLLVPTASFFIAS---QL--QEQFNKILPEPTEG----FAADDEPTTPAEL 60
Query: 60 GSLNFMKKTLRFLRDGGAEFRHAYTTT---PMCCPSRSSLLTGLYMHNHHVY-TNNDNCS 115
+FL Y ++ P +L + Y ND
Sbjct: 61 --------VGKFL---------GYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND--- 100
Query: 116 SHSWQANHEPRSF-ATYLSNSGYRTDTSQNLVRSYVSS 152
H+ A L + ++ L+++Y+++
Sbjct: 101 IHA---------LAAKLLQENDTTLVKTKELIKNYITA 129
Score = 29.2 bits (65), Expect = 0.89
Identities = 23/148 (15%), Positives = 43/148 (29%), Gaps = 61/148 (41%)
Query: 29 LSGQQSFPGYMNQERKPNIILFLTDDQDVELGSLNFMKKTLRFLRDGGAEFRHAYTTTPM 88
+ +++P N P+I+ + +E +G +PM
Sbjct: 308 VRCYEAYP---NTSLPPSIL-----EDSLENN-------------EGVP--------SPM 338
Query: 89 CC---PSRSSLLTGLYMHNHHVYTNNDNCSSHSWQANHEPRSFATYLS--NSGYRTDTSQ 143
++ + + N H+ P +S N ++
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHL-----------------PAGKQVEISLVNG------AK 375
Query: 144 NLVRSYVSSTNPMELLPFDIDLPTTKTP 171
NLV VS P L ++ L K P
Sbjct: 376 NLV---VSG-PPQSLYGLNLTLRKAKAP 399
Score = 28.1 bits (62), Expect = 1.9
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 24/105 (22%)
Query: 82 AYTTTPMCCPSRSSLLTGLYMHNHHVYT------NNDNCSSHSWQANHEPRS-FATYLSN 134
P S S+L + N + N D+ ++ E R + TY
Sbjct: 131 IMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY----FE---ELRDLYQTYHVL 183
Query: 135 SGYRTDTS----QNLVRSYVSSTNPMELLPFDI----DLPTTKTP 171
G S L+R+ + +I + P+ TP
Sbjct: 184 VGDLIKFSAETLSELIRT-TLDAEKVFTQGLNILEWLENPSN-TP 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.17
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 3/100 (3%)
Query: 1 MHSTLTKKSTSSLNVDSSDHRRLKVKKQLSGQQSFPGYMNQERKPNIILFLTDDQDVE-L 59
M L + + S +K++ S Q + + N +L L + Q+ +
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYENCLLVLLNVQNAKAW 259
Query: 60 GSLNFMKKTLRFLRDGG-AEFRHAYTTTPMCCPSRSSLLT 98
+ N K L R +F A TTT + S LT
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
>1ei6_A Phosphonoacetate hydrolase; zinc,; HET: TLA; 2.10A {Pseudomonas
fluorescens} SCOP: c.76.1.4
Length = 406
Score = 30.6 bits (68), Expect = 0.23
Identities = 9/44 (20%), Positives = 13/44 (29%)
Query: 68 TLRFLRDGGAEFRHAYTTTPMCCPSRSSLLTGLYMHNHHVYTNN 111
L L G P+ S++TG H + N
Sbjct: 42 FLAELTGFGTVLTGDCVVPSFTNPNNLSIVTGAPPSVHGICGNF 85
>3szy_A Phosphonoacetate hydrolase; alkaline phosphatase superfamily; 1.35A
{Sinorhizobium meliloti} PDB: 3szz_A 3t00_A 3t01_A
3t02_A
Length = 427
Score = 29.4 bits (65), Expect = 0.59
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 68 TLRFLRDGGAEFRHAYTTTPMCCPSRSSLLTGLYMHNHHVYTNN 111
L+ +++ GA P+ S+ TG H + N
Sbjct: 50 ALKRIKERGAVRLAHSVIPSFTNPNNLSIATGSPPAVHGICGNY 93
>3nkq_A Ectonucleotide pyrophosphatase/phosphodiesterase member 2;
lysophospholipase D, autotaxin, ENPP2, lysophosphatidic
acid hydrolase; HET: NAG BMA MAN NKQ; 1.70A {Mus
musculus} PDB: 3nkm_A* 3nkn_A* 3nkp_A* 3nko_A* 3nkr_A*
2xrg_A* 2xr9_A*
Length = 831
Score = 28.0 bits (61), Expect = 2.0
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 67 KTLRFLRDGGAEFRHAYTTTP-MCCPSRSSLLTGLYMHNHHVYTNN 111
+ LR G + P P+ +L TGLY +H + N+
Sbjct: 151 PNIEKLRSCGTHAPYMRPVYPTKTFPNLYTLATGLYPESHGIVGNS 196
>2xwx_A GBPA, glcnac-binding protein A; chitin-binding protein; 1.80A
{Vibrio cholerae}
Length = 391
Score = 26.8 bits (58), Expect = 4.6
Identities = 7/28 (25%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 121 ANHEPRSFATYLSNSGYRTDTSQNLVRS 148
ANH + + Y++ + + +Q L R
Sbjct: 96 ANHVTKDWKYYITKPNW--NPNQPLSRD 121
>3eps_A Isocitrate dehydrogenase kinase/phosphatase; ATP-binding,
glyoxylate bypass, nucleotide-binding, protein
phosphatase; HET: AMP ATP; 2.80A {Escherichia coli O157}
PDB: 3lcb_A* 3lc6_A*
Length = 578
Score = 26.8 bits (59), Expect = 4.9
Identities = 9/64 (14%), Positives = 18/64 (28%), Gaps = 3/64 (4%)
Query: 105 HHVYTNNDNCSSHSWQANHEPRSFATYLSNSGYRTDTSQNLVRSYVSSTN---PMELLPF 161
H + S Q R+ L+ + ++L+ +S +
Sbjct: 112 DHRSLTPERLFIFSSQPERRFRTIPRPLAKDFHPDHGWESLLMRVISDLPLRLHWQNKSR 171
Query: 162 DIDL 165
DI
Sbjct: 172 DIHY 175
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.7 bits (55), Expect = 6.9
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 5/26 (19%)
Query: 7 KKSTSSLNV---DSSDHRRLKVKKQL 29
KK +SL + DS+ L +K +
Sbjct: 23 KKLQASLKLYADDSAP--ALAIKATM 46
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.129 0.382
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,436,838
Number of extensions: 124331
Number of successful extensions: 237
Number of sequences better than 10.0: 1
Number of HSP's gapped: 229
Number of HSP's successfully gapped: 24
Length of query: 175
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 88
Effective length of database: 4,272,666
Effective search space: 375994608
Effective search space used: 375994608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)