BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy12325
         (83 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate
           Dehydrogenase From Porcine Heart Mitochondria
 pdb|1LWD|B Chain B, Crystal Structure Of Nadp-Dependent Isocitrate
           Dehydrogenase From Porcine Heart Mitochondria
          Length = 413

 Score = 65.9 bits (159), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 316 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 354


>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With
           Nadph & Mn2+
 pdb|4HCX|B Chain B, Structure Of Icdh-1 From M.tuberculosis Complexed With
           Nadph & Mn2+
          Length = 409

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +R++Q G  TSTNP+ASI+AWT+GLQHR KLD TP++
Sbjct: 319 YRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEV 355


>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp And Isocitrate
 pdb|3MAP|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp And Isocitrate
 pdb|3MAR|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp
 pdb|3MAR|B Chain B, Crystal Structure Of Homodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp
 pdb|3MAS|A Chain A, Crystal Structure Of Heterodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp And Isocitrate
          Length = 422

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/38 (68%), Positives = 33/38 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA
Sbjct: 316 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 353


>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase R132h Mutant In Complex With
           Nadph, Alpha-Ketoglutarate And Calcium(2+)
 pdb|3INM|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase R132h Mutant In Complex With
           Nadph, Alpha-Ketoglutarate And Calcium(2+)
 pdb|3INM|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase R132h Mutant In Complex With
           Nadph, Alpha-Ketoglutarate And Calcium(2+)
          Length = 425

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/38 (68%), Positives = 33/38 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA
Sbjct: 316 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 353


>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex Nadp
 pdb|1T09|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex Nadp
 pdb|1T0L|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex With Nadp,
           Isocitrate, And Calcium(2+)
 pdb|1T0L|B Chain B, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex With Nadp,
           Isocitrate, And Calcium(2+)
 pdb|1T0L|C Chain C, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex With Nadp,
           Isocitrate, And Calcium(2+)
 pdb|1T0L|D Chain D, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent
           Isocitrate Dehydrogenase In Complex With Nadp,
           Isocitrate, And Calcium(2+)
          Length = 414

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/38 (68%), Positives = 33/38 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA
Sbjct: 316 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 353


>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From
           Sinorhizobium Meliloti 1021
 pdb|3US8|B Chain B, Crystal Structure Of An Isocitrate Dehydrogenase From
           Sinorhizobium Meliloti 1021
          Length = 427

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R+HQKG +TSTN +ASI+AWT+GL HRAKLD   +LA+
Sbjct: 337 YRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELAK 375


>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human
           Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In
           Complex With Nadp And Isocitrate
          Length = 419

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/38 (68%), Positives = 33/38 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA
Sbjct: 321 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 358


>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
           Dehydrogenase
 pdb|2CMJ|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
           Dehydrogenase
 pdb|2CMV|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate
           Dehydrogenase Complexed With Cadmium And Citrate
 pdb|2CMV|B Chain B, Crystal Structure Of Mouse Cytosolic Isocitrate
           Dehydrogenase Complexed With Cadmium And Citrate
          Length = 410

 Score = 60.5 bits (145), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 24/38 (63%), Positives = 33/38 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R +QKG +TSTNP+ASI+AW++GL HRAKLDN  +L+
Sbjct: 313 YRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELS 350


>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
           Desulfotalea Psychrophila: Biochemical Properties And
           Crystal Structure Analysis
 pdb|2UXQ|B Chain B, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
           Desulfotalea Psychrophila: Biochemical Properties And
           Crystal Structure Analysis
 pdb|2UXQ|C Chain C, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
           Desulfotalea Psychrophila: Biochemical Properties And
           Crystal Structure Analysis
 pdb|2UXQ|D Chain D, Isocitrate Dehydrogenase From The Psychrophilic Bacterium
           Desulfotalea Psychrophila: Biochemical Properties And
           Crystal Structure Analysis
 pdb|2UXR|A Chain A, Complex With Isocitrate And The Protein Isocitrate
           Dehydrogenase From The Psychrophilic Bacterium
           Desulfotalea Psychrophila
 pdb|2UXR|B Chain B, Complex With Isocitrate And The Protein Isocitrate
           Dehydrogenase From The Psychrophilic Bacterium
           Desulfotalea Psychrophila
 pdb|4AOV|A Chain A, Dpidh-Nadp. The Complex Structures Of Isocitrate
           Dehydrogenase From Clostridium Thermocellum And
           Desulfotalea Psychrophila, Support A New Active Site
           Locking Mechanism
          Length = 402

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 23/37 (62%), Positives = 28/37 (75%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           + +H KG +TSTNPVA IYAWT  L+ R +LD TPDL
Sbjct: 312 YYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDL 348


>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
           In Complex With Nadp(+)
 pdb|2QFV|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
           In Complex With Nadp(+)
 pdb|2QFV|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
           In Complex With Nadp(+)
 pdb|2QFV|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase
           In Complex With Nadp(+)
 pdb|2QFW|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Isocitrate
 pdb|2QFW|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Isocitrate
 pdb|2QFW|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Isocitrate
 pdb|2QFW|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Isocitrate
 pdb|2QFW|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Isocitrate
 pdb|2QFW|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Isocitrate
 pdb|2QFX|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Nadph, A- Ketoglutarate
           And Ca(2+)
 pdb|2QFX|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Nadph, A- Ketoglutarate
           And Ca(2+)
 pdb|2QFX|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Nadph, A- Ketoglutarate
           And Ca(2+)
 pdb|2QFX|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Nadph, A- Ketoglutarate
           And Ca(2+)
 pdb|2QFX|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Nadph, A- Ketoglutarate
           And Ca(2+)
 pdb|2QFX|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With Nadph, A- Ketoglutarate
           And Ca(2+)
 pdb|2QFY|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With A-ketoglutarate
 pdb|2QFY|B Chain B, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With A-ketoglutarate
 pdb|2QFY|C Chain C, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With A-ketoglutarate
 pdb|2QFY|D Chain D, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With A-ketoglutarate
 pdb|2QFY|E Chain E, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With A-ketoglutarate
 pdb|2QFY|F Chain F, Crystal Structure Of Saccharomyces Cerevesiae
           Mitochondrial Nadp(+)- Dependent Isocitrate
           Dehydrogenase In Complex With A-ketoglutarate
          Length = 427

 Score = 55.5 bits (132), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R++QKG +TSTN +ASI+AW++GL  R +LDNTP L +
Sbjct: 332 YRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCK 370


>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile
           Thermotoga Maritima
 pdb|1ZOR|B Chain B, Isocitrate Dehydrogenase From The Hyperthermophile
           Thermotoga Maritima
          Length = 399

 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/37 (51%), Positives = 27/37 (72%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +  + KG KTSTNP ASI+AWT  ++ R +LD TP++
Sbjct: 310 YYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEV 346


>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate
           Dehydrogenase From Clostridium Thermocellum And
           Desulfotalea Psychrophila, Support A New Active Site
           Locking Mechanism
 pdb|4AOY|B Chain B, Open Ctidh. The Complex Structures Of Isocitrate
           Dehydrogenase From Clostridium Thermocellum And
           Desulfotalea Psychrophila, Support A New Active Site
           Locking Mechanism
 pdb|4AOY|C Chain C, Open Ctidh. The Complex Structures Of Isocitrate
           Dehydrogenase From Clostridium Thermocellum And
           Desulfotalea Psychrophila, Support A New Active Site
           Locking Mechanism
 pdb|4AOY|D Chain D, Open Ctidh. The Complex Structures Of Isocitrate
           Dehydrogenase From Clostridium Thermocellum And
           Desulfotalea Psychrophila, Support A New Active Site
           Locking Mechanism
 pdb|4AOU|A Chain A, Ctidh Bound To Nadp. The Complex Structures Of Isocitrate
           Dehydrogenase From Clostridium Thermocellum And
           Desulfotalea Psychrophila, Support A New Active Site
           Locking Mechanism
          Length = 402

 Score = 41.6 bits (96), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/37 (45%), Positives = 26/37 (70%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           + +H KG +TSTN +A+I+AWT  L+ R +LD   +L
Sbjct: 313 YYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKEL 349


>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
 pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
           A Porcine Respiratory Coronavirus In Complex With The
           Pig Aminopeptidase N Ectodomain
          Length = 959

 Score = 26.2 bits (56), Expect = 5.5,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 3   LLQGITGFFMMRYGIEHFLRFRKKNSNVG 31
           L+QG+T  F   + ++   +F+K N +VG
Sbjct: 880 LIQGVTRRFSSEFELQQLEQFKKNNMDVG 908


>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Poly- Alanine
          Length = 908

 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 3   LLQGITGFFMMRYGIEHFLRFRKKNSNVG 31
           L+QG+T  F   + ++   +F+K N +VG
Sbjct: 836 LIQGVTRRFSSEFELQQLEQFKKNNMDVG 864


>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Cleaved Poly-Alanine
 pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Substance P
          Length = 908

 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 3   LLQGITGFFMMRYGIEHFLRFRKKNSNVG 31
           L+QG+T  F   + ++   +F+K N +VG
Sbjct: 836 LIQGVTRRFSSEFELQQLEQFKKNNMDVG 864


>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
 pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Alanine
 pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
           With Bestatin
          Length = 909

 Score = 25.8 bits (55), Expect = 6.0,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 3   LLQGITGFFMMRYGIEHFLRFRKKNSNVG 31
           L+QG+T  F   + ++   +F+K N +VG
Sbjct: 837 LIQGVTRRFSSEFELQQLEQFKKNNMDVG 865


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.138    0.422 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,446,134
Number of Sequences: 62578
Number of extensions: 78466
Number of successful extensions: 236
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 220
Number of HSP's gapped (non-prelim): 16
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)