BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12325
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus
GN=Idh2 PE=1 SV=3
Length = 452
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+REHQKG TSTNP+ASI+AWT+GL+HR KLD DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens
GN=IDH2 PE=1 SV=2
Length = 452
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+REHQKG TSTNP+ASI+AWT+GL+HR KLD DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus
GN=IDH2 PE=1 SV=2
Length = 452
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+REHQKG TSTNP+ASI+AWT+GL+HR KLD DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus
GN=Idh2 PE=1 SV=2
Length = 452
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+REHQKG TSTNP+ASI+AWT+GL+HR KLD DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca
fascicularis GN=IDH2 PE=2 SV=1
Length = 452
Score = 65.9 bits (159), Expect = 7e-11, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+REHQKG TSTNP+ASI+AWT+GL+HR KLD DL R
Sbjct: 355 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 393
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus
scrofa GN=IDH2 PE=1 SV=1
Length = 421
Score = 65.5 bits (158), Expect = 8e-11, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 32/39 (82%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+REHQKG TSTNP+ASI+AWT+GL+HR KLD DL R
Sbjct: 324 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 362
>sp|P79089|IDHP_ASPNG Isocitrate dehydrogenase [NADP], mitochondrial OS=Aspergillus niger
GN=icdA PE=2 SV=1
Length = 498
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 26/37 (70%), Positives = 32/37 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
+REHQKG +TSTNP+ASI+AWT+GL R KLD TPD+
Sbjct: 403 YREHQKGRETSTNPIASIFAWTRGLIQRGKLDETPDV 439
>sp|P50215|IDH_SPHYA Isocitrate dehydrogenase [NADP] OS=Sphingomonas yanoikuyae GN=icd
PE=3 SV=1
Length = 406
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+R+HQ+G TSTNP+ASI+AWTQGL R K D+TPD+ +
Sbjct: 314 YRQHQQGKATSTNPIASIFAWTQGLSFRGKFDDTPDVVK 352
>sp|P65097|IDH_MYCTU Isocitrate dehydrogenase [NADP] OS=Mycobacterium tuberculosis
GN=icd PE=3 SV=1
Length = 409
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
+R++Q G TSTNP+ASI+AWT+GLQHR KLD TP++
Sbjct: 319 YRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEV 355
>sp|P65098|IDH_MYCBO Isocitrate dehydrogenase [NADP] OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=icd PE=3 SV=1
Length = 409
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 32/37 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
+R++Q G TSTNP+ASI+AWT+GLQHR KLD TP++
Sbjct: 319 YRQYQAGKPTSTNPIASIFAWTRGLQHRGKLDGTPEV 355
>sp|Q75JR3|IDHC_DICDI Isocitrate dehydrogenase [NADP] cytoplasmic OS=Dictyostelium
discoideum GN=idhC PE=1 SV=1
Length = 412
Score = 62.8 bits (151), Expect = 5e-10, Method: Composition-based stats.
Identities = 26/39 (66%), Positives = 33/39 (84%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
FREHQKG +TSTN +ASI+AWT+GL++RAKLDN L +
Sbjct: 315 FREHQKGRETSTNSIASIFAWTRGLEYRAKLDNNDKLLK 353
>sp|Q5R9C5|IDHC_PONAB Isocitrate dehydrogenase [NADP] cytoplasmic OS=Pongo abelii GN=IDH1
PE=2 SV=2
Length = 414
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
+R +QKG +TSTNP+ASI+AWT+GL HRAKLDN +LA
Sbjct: 316 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 353
>sp|O75874|IDHC_HUMAN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Homo sapiens GN=IDH1
PE=1 SV=2
Length = 414
Score = 62.4 bits (150), Expect = 7e-10, Method: Composition-based stats.
Identities = 26/38 (68%), Positives = 33/38 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
+R +QKG +TSTNP+ASI+AWT+GL HRAKLDN +LA
Sbjct: 316 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELA 353
>sp|P41939|IDHC_YEAST Isocitrate dehydrogenase [NADP] cytoplasmic OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IDP2 PE=1
SV=2
Length = 412
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/39 (61%), Positives = 33/39 (84%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
FR+HQ+G +TSTN +ASI+AWT+G+ R KLDNTPD+ +
Sbjct: 316 FRQHQQGKETSTNSIASIFAWTRGIIQRGKLDNTPDVVK 354
>sp|Q75JR2|IDHP_DICDI Isocitrate dehydrogenase [NADP], mitochondrial OS=Dictyostelium
discoideum GN=idhM PE=3 SV=1
Length = 428
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 27/39 (69%), Positives = 30/39 (76%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
FREHQKGN+TSTN VASI+AWT L R KLDN DL +
Sbjct: 336 FREHQKGNETSTNSVASIFAWTSALGQRGKLDNNKDLVK 374
>sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic OS=Ovis aries GN=IDH1
PE=2 SV=1
Length = 414
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/38 (65%), Positives = 33/38 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
+R +QKG +TSTNP+ASI+AWT+GL HRAKLDN +L+
Sbjct: 316 YRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELS 353
>sp|Q9Z2K8|IDHC_MICOH Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus ochrogaster
GN=IDH1 PE=3 SV=1
Length = 414
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
+R HQKG +TSTNP+ASI+AW++GL HRA+LDN +L+
Sbjct: 316 YRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELS 353
>sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic OS=Microtus mexicanus
GN=IDH1 PE=2 SV=1
Length = 414
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
+R HQKG +TSTNP+ASI+AW++GL HRA+LDN +L+
Sbjct: 316 YRMHQKGQETSTNPIASIFAWSRGLAHRARLDNNTELS 353
>sp|O88844|IDHC_MOUSE Isocitrate dehydrogenase [NADP] cytoplasmic OS=Mus musculus GN=Idh1
PE=1 SV=2
Length = 414
Score = 60.5 bits (145), Expect = 3e-09, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
+R +QKG +TSTNP+ASI+AW++GL HRAKLDN +L+
Sbjct: 316 YRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELS 353
>sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic OS=Rattus norvegicus
GN=Idh1 PE=1 SV=1
Length = 414
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 33/38 (86%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
+R +QKG +TSTNP+ASI+AW++GL HRAKLDN +L+
Sbjct: 316 YRMYQKGQETSTNPIASIFAWSRGLAHRAKLDNNTELS 353
>sp|O13294|IDH2_CANTR Isocitrate dehydrogenase [NADP] peroxisomal OS=Candida tropicalis
GN=IDP2 PE=1 SV=3
Length = 411
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 23/39 (58%), Positives = 33/39 (84%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+R+HQ+G +TSTN +ASIYAWT+GL R KLD+TP++ +
Sbjct: 318 YRQHQQGKETSTNSIASIYAWTRGLIQRGKLDDTPEVVK 356
>sp|O13285|IDH1_CANTR Isocitrate dehydrogenase [NADP], mitochondrial OS=Candida
tropicalis GN=IDP1 PE=3 SV=1
Length = 430
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 23/37 (62%), Positives = 31/37 (83%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
+R+HQ+G +TSTN +ASI+AWT+GL R KLD TPD+
Sbjct: 341 YRQHQQGKETSTNSIASIFAWTRGLAQRGKLDETPDV 377
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2
Length = 413
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 30/37 (81%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
FR HQKG +TSTN +ASI+AWT+GL HRAKLD+ L
Sbjct: 319 FRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNAKL 355
>sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic OS=Bos taurus GN=IDH1
PE=2 SV=1
Length = 414
Score = 58.9 bits (141), Expect = 8e-09, Method: Composition-based stats.
Identities = 24/38 (63%), Positives = 32/38 (84%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
+R +QKG +T TNP+ASI+AWT+GL HRAKLDN +L+
Sbjct: 316 YRMYQKGQETLTNPIASIFAWTRGLAHRAKLDNNKELS 353
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment)
OS=Medicago sativa PE=2 SV=1
Length = 433
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 25/37 (67%), Positives = 30/37 (81%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
FR HQKG +TSTN +ASI+AWT+GL HRAKLD+ L
Sbjct: 339 FRVHQKGGETSTNSIASIFAWTRGLAHRAKLDDNATL 375
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1
Length = 415
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
+R HQKG +TSTN +ASI+AWT+GL HRA LDN L
Sbjct: 318 YRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERL 354
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2
SV=1
Length = 416
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 24/37 (64%), Positives = 29/37 (78%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
+R HQKG +TSTN +ASI+AWT+GL HRA LDN L
Sbjct: 318 YRVHQKGGETSTNSIASIFAWTRGLAHRATLDNNERL 354
>sp|P53982|IDHH_YEAST Isocitrate dehydrogenase [NADP] OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=IDP3 PE=1 SV=1
Length = 420
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 31/39 (79%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
FR+HQ+G +TSTN +ASI+AWT+ + R KLDNT D+ +
Sbjct: 316 FRKHQRGEETSTNSIASIFAWTRAIIQRGKLDNTDDVIK 354
>sp|P21954|IDHP_YEAST Isocitrate dehydrogenase [NADP], mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IDP1 PE=1
SV=1
Length = 428
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 22/39 (56%), Positives = 32/39 (82%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+R++QKG +TSTN +ASI+AW++GL R +LDNTP L +
Sbjct: 333 YRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCK 371
>sp|O14254|IDHP_SCHPO Probable isocitrate dehydrogenase [NADP], mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=idp1 PE=3 SV=2
Length = 439
Score = 49.3 bits (116), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/39 (51%), Positives = 28/39 (71%)
Query: 45 FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
+ ++ KG KTSTN +ASI+AWT+GL HR +LD L +
Sbjct: 347 YMQYLKGKKTSTNSIASIFAWTRGLAHRGRLDGNERLVK 385
>sp|O35298|AOAH_MOUSE Acyloxyacyl hydrolase OS=Mus musculus GN=Aoah PE=2 SV=1
Length = 574
Score = 32.3 bits (72), Expect = 0.89, Method: Composition-based stats.
Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 4 LQGITGFFMMRYGIEH---FLRFRKKNSNVGRETQ-----GKMIYFLTFFREHQKGNKTS 55
L G+TGF GIE + R RK+N R+ Q G L F E N+ S
Sbjct: 300 LSGVTGFLDSTSGIEEKSIYHRLRKRNHCNHRDYQSISKNGASSRNLKNFIESLSRNQAS 359
Query: 56 TNPVASIYAWTQGLQHRAKLDNTPDL 81
+P +YA +K D P++
Sbjct: 360 DHPAIVLYAMIGNDVCNSKADTVPEM 385
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,701,063
Number of Sequences: 539616
Number of extensions: 991006
Number of successful extensions: 2335
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2305
Number of HSP's gapped (non-prelim): 31
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)