Query psy12325
Match_columns 83
No_of_seqs 103 out of 294
Neff 2.3
Searched_HMMs 46136
Date Fri Aug 16 16:09:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1526|consensus 100.0 2.2E-31 4.8E-36 214.8 4.1 55 28-82 302-363 (422)
2 PLN03065 isocitrate dehydrogen 99.7 5.6E-18 1.2E-22 138.9 2.7 55 28-82 361-422 (483)
3 PLN00096 isocitrate dehydrogen 99.6 1.4E-15 3.1E-20 122.4 4.2 42 38-79 306-347 (393)
4 COG0538 Icd Isocitrate dehydro 99.1 5E-11 1.1E-15 97.3 1.9 38 38-81 328-365 (407)
5 PTZ00435 isocitrate dehydrogen 98.9 1.3E-09 2.9E-14 88.3 3.5 54 29-82 294-354 (413)
6 TIGR00127 nadp_idh_euk isocitr 98.7 1E-08 2.3E-13 83.0 3.8 50 32-81 295-351 (409)
7 PLN00103 isocitrate dehydrogen 98.0 4.2E-06 9E-11 68.0 3.5 44 38-81 311-354 (410)
8 PRK08299 isocitrate dehydrogen 97.9 7.3E-06 1.6E-10 66.5 2.0 45 38-82 307-351 (402)
9 TIGR00183 prok_nadp_idh isocit 89.5 0.18 4E-06 41.0 1.4 32 38-75 339-370 (416)
10 PRK00772 3-isopropylmalate deh 81.6 1.9 4.2E-05 34.6 3.5 28 38-71 280-307 (358)
11 PRK07006 isocitrate dehydrogen 81.5 1.1 2.5E-05 36.6 2.2 33 38-76 332-364 (409)
12 TIGR00175 mito_nad_idh isocitr 71.1 3.8 8.3E-05 32.5 2.6 28 47-75 265-292 (333)
13 TIGR02088 LEU3_arch isopropylm 69.7 4 8.6E-05 32.4 2.4 33 38-76 254-286 (322)
14 PLN00118 isocitrate dehydrogen 68.2 6.9 0.00015 31.9 3.5 32 38-75 300-331 (372)
15 PF05712 MRG: MRG; InterPro: 67.4 2.5 5.5E-05 30.1 0.8 13 14-26 140-152 (194)
16 PRK14025 multifunctional 3-iso 62.5 7.1 0.00015 31.2 2.5 27 49-76 265-291 (330)
17 PF00180 Iso_dh: Isocitrate/is 62.1 3.7 8.1E-05 32.2 0.9 30 38-73 276-305 (348)
18 PF14784 ECIST_Cterm: C-termin 57.5 10 0.00023 26.7 2.4 24 54-82 94-117 (126)
19 cd01767 UBX UBX (ubiquitin reg 49.8 9.4 0.0002 23.1 1.1 28 32-69 8-35 (77)
20 PF06923 GutM: Glucitol operon 49.1 22 0.00048 24.0 2.9 28 3-31 13-40 (109)
21 PRK06451 isocitrate dehydrogen 47.8 15 0.00032 30.4 2.2 31 38-74 332-362 (412)
22 PF08344 TRP_2: Transient rece 46.1 24 0.00052 22.4 2.5 23 54-76 37-59 (63)
23 PRK10234 DNA-binding transcrip 44.1 29 0.00063 24.3 2.9 26 3-28 14-39 (118)
24 PF11084 DUF2621: Protein of u 40.0 15 0.00034 27.1 1.1 11 4-14 20-30 (141)
25 PRK12670 putative monovalent c 39.4 22 0.00049 23.8 1.7 24 55-79 74-97 (99)
26 PF03672 UPF0154: Uncharacteri 38.9 23 0.0005 22.9 1.6 25 3-30 7-32 (64)
27 TIGR00169 leuB 3-isopropylmala 36.8 50 0.0011 26.6 3.6 28 38-71 277-304 (349)
28 PF04305 DUF455: Protein of un 36.5 22 0.00048 27.3 1.5 61 17-82 112-172 (253)
29 PF03049 Herpes_UL79: UL79 fam 36.1 14 0.0003 29.2 0.3 38 2-44 116-157 (253)
30 smart00166 UBX Domain present 35.3 22 0.00049 21.7 1.1 27 32-68 10-36 (80)
31 cd00082 HisKA Histidine Kinase 34.9 42 0.0009 16.9 2.0 17 57-73 17-33 (65)
32 PHA03364 hypothetical protein; 34.1 14 0.00031 29.3 0.1 38 2-44 118-159 (264)
33 cd07984 LPLAT_LABLAT-like Lyso 33.4 30 0.00064 22.9 1.6 48 16-64 79-126 (192)
34 KOG4790|consensus 32.2 32 0.00069 28.8 1.8 33 47-80 37-69 (362)
35 COG2121 Uncharacterized protei 31.6 22 0.00048 27.6 0.8 23 21-43 111-133 (214)
36 PF10126 Nit_Regul_Hom: Unchar 31.5 4.6 9.9E-05 28.7 -2.7 11 5-15 26-36 (110)
37 TIGR03503 conserved hypothetic 31.0 15 0.00031 30.3 -0.3 26 20-45 21-49 (374)
38 KOG4461|consensus 29.7 35 0.00075 29.4 1.7 16 56-71 352-367 (473)
39 PF04028 DUF374: Domain of unk 29.2 53 0.0011 21.0 2.1 22 18-39 50-71 (74)
40 PRK06946 lipid A biosynthesis 28.5 53 0.0011 24.4 2.3 46 15-65 168-217 (293)
41 TIGR02924 ICDH_alpha isocitrat 26.8 43 0.00093 28.4 1.8 26 50-76 267-292 (473)
42 PRK08997 isocitrate dehydrogen 26.6 46 0.00099 26.7 1.8 33 38-76 262-294 (334)
43 COG5558 Transposase [DNA repli 25.4 33 0.00072 27.4 0.8 34 19-52 75-113 (261)
44 PLN00123 isocitrate dehydrogen 25.3 49 0.0011 27.0 1.8 22 55-76 298-319 (360)
45 PF10484 MRP-S23: Mitochondria 25.0 50 0.0011 23.8 1.6 19 58-76 7-25 (127)
46 PRK09222 isocitrate dehydrogen 24.2 52 0.0011 28.0 1.8 26 50-76 271-296 (482)
47 KOG1011|consensus 23.4 51 0.0011 30.9 1.7 54 4-61 474-536 (1283)
48 PRK08943 lipid A biosynthesis 23.2 45 0.00097 25.0 1.1 47 14-65 188-238 (314)
49 PF00512 HisKA: His Kinase A ( 22.8 56 0.0012 18.3 1.3 15 57-71 15-29 (68)
50 PF04478 Mid2: Mid2 like cell 22.0 62 0.0013 24.0 1.6 55 2-61 53-122 (154)
51 COG3897 Predicted methyltransf 21.4 52 0.0011 25.8 1.2 26 58-83 54-79 (218)
52 PF03616 Glt_symporter: Sodium 20.5 85 0.0018 24.9 2.2 53 2-60 167-220 (368)
53 PF00973 Paramyxo_ncap: Paramy 20.5 34 0.00073 29.4 0.0 15 5-19 264-279 (524)
No 1
>KOG1526|consensus
Probab=99.97 E-value=2.2e-31 Score=214.84 Aligned_cols=55 Identities=53% Similarity=0.729 Sum_probs=53.4
Q ss_pred CcceecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325 28 SNVGRETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82 (83)
Q Consensus 28 ~~Vgv~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~ 82 (83)
.||++||||| |||||||||+||||+|||||||||||||||||+|||+||+|++|.
T Consensus 302 TSVLv~pdGKT~EaEAAHGTVtRHyr~hqkG~eTSTN~IASIFAWtRgl~hR~kLD~n~~l~ 363 (422)
T KOG1526|consen 302 TSVLVCPDGKTVEAEAAHGTVTRHYRMHQKGQETSTNSIASIFAWTRGLAHRAKLDNNEALA 363 (422)
T ss_pred eeEEEcCCCCeeeeeccccchhHHHHHHhcCCCccCcchHHHHHHHHHHHHhhccCCCHHHH
Confidence 5899999999 999999999999999999999999999999999999999999885
No 2
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional
Probab=99.70 E-value=5.6e-18 Score=138.90 Aligned_cols=55 Identities=51% Similarity=0.752 Sum_probs=51.2
Q ss_pred CcceecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325 28 SNVGRETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82 (83)
Q Consensus 28 ~~Vgv~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~ 82 (83)
.|+.++|||+ ||||+||||+||+|++||+||||+||||+.+|+|+|++|+|++|.
T Consensus 361 pSanig~dg~~~~fEa~HGSapd~~~~~iaGk~t~ANPiA~IlA~ammL~hlg~ld~~~~l~ 422 (483)
T PLN03065 361 TSVLLSSDGKTLEAEAAHGTVTRHFRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEELL 422 (483)
T ss_pred ccceeCCCCceEEEecCcCcCccccchhccCCCCCcChHHHHHHHHHHHHHhCCCCccchHH
Confidence 4566789995 999999999999999999999999999999999999999999875
No 3
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional
Probab=99.57 E-value=1.4e-15 Score=122.43 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=41.2
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCC
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTP 79 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~ 79 (83)
|||++|||++||||++||+||+|+|+||+.+|.||++||+++
T Consensus 306 HGSApdiag~~~~Gk~~~ANPiA~IlA~a~mL~~~~~l~g~~ 347 (393)
T PLN00096 306 HGTVTDMDEARLRGEETSLNPLGMVEGLIGAMNHAADVHGGK 347 (393)
T ss_pred CCChHHhhhhhhcCCCCccChHHHHHHHHHHHHhhcccCCCc
Confidence 999999999999999999999999999999999999999986
No 4
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion]
Probab=99.06 E-value=5e-11 Score=97.30 Aligned_cols=38 Identities=34% Similarity=0.345 Sum_probs=35.7
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L 81 (83)
||||+||| |+ +|+||+|+||||+++|+|||.+|.++-+
T Consensus 328 HGTapk~a-----G~-~~~Np~a~Ils~~~ml~~~Gw~eaa~li 365 (407)
T COG0538 328 HGTAPKYA-----GK-DSTNPIASILSGTMMLRHRGWLEAADLI 365 (407)
T ss_pred cCcccccc-----Cc-CCCCcHHHHHHHHHHHHHhhhhhhHHHH
Confidence 99999999 88 9999999999999999999999987743
No 5
>PTZ00435 isocitrate dehydrogenase; Provisional
Probab=98.88 E-value=1.3e-09 Score=88.25 Aligned_cols=54 Identities=50% Similarity=0.741 Sum_probs=48.5
Q ss_pred cceecCCC-------ceeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325 29 NVGRETQG-------KMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82 (83)
Q Consensus 29 ~Vgv~pDG-------~hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~ 82 (83)
|+-+.||| -|||+.+||++|++|++++.||+|+|+||...|+|.|++|+||++.
T Consensus 294 Sanig~d~~~a~FEp~HGSApdi~~~~iaGk~~~ANP~A~Ils~ammL~~lg~~~~~~~~~ 354 (413)
T PTZ00435 294 SVLVCPDGKTVEAEAAHGTVTRHYRQHQKGKETSTNSIASIFAWTRGLAHRAKLDNNQELV 354 (413)
T ss_pred cceeCCCCCeEEEEcCcCCccccchhhhcCCCCccChHHHHHHHHHHHHHhCcccccchHH
Confidence 33446888 3999999999999999999999999999999999999999988763
No 6
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type. This model does not discriminate cytosolic, mitochondrial, and chloroplast proteins. However, the model starts very near the amino end of the cytosolic form; the finding of additional amino-terminal sequence may indicate a transit peptide.
Probab=98.72 E-value=1e-08 Score=83.02 Aligned_cols=50 Identities=52% Similarity=0.787 Sum_probs=45.4
Q ss_pred ecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325 32 RETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81 (83)
Q Consensus 32 v~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L 81 (83)
+++||. |||+.++|.+|++|++++.||+|+|+||..+|.|+|++|.||.+
T Consensus 295 ig~~~~~~~fEp~HGSApdi~~~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~g~ 351 (409)
T TIGR00127 295 ICPDGKTFEAEAAHGTVTRHYRMYQKGQETSTNSIASIFAWSRGLAHRAKLDNNPEL 351 (409)
T ss_pred eCCCCceEEeccccCCCcccchhhhCCCCCccChHHHHHHHHHHHHHhhhcCCcccH
Confidence 457764 99999999999999999999999999999999999999887765
No 7
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional
Probab=98.03 E-value=4.2e-06 Score=68.03 Aligned_cols=44 Identities=52% Similarity=0.810 Sum_probs=42.1
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L 81 (83)
|||..+||++|+-..+...||+|+|.||.-.|+|.+.+|+|+.+
T Consensus 311 HGSApd~~~~~diaGk~iANP~A~IlS~ammL~~l~~~~~~~g~ 354 (410)
T PLN00103 311 HGTVTRHYRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARL 354 (410)
T ss_pred CCcCcccchhhhhcCCCccChHHHHHHHHHHHHHhhccccccch
Confidence 99999999999999999999999999999999999999988765
No 8
>PRK08299 isocitrate dehydrogenase; Validated
Probab=97.86 E-value=7.3e-06 Score=66.49 Aligned_cols=45 Identities=56% Similarity=0.945 Sum_probs=42.9
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~ 82 (83)
|||..+||++|.+|+..+.||+|+|.|+.--|+|-|++|+||++.
T Consensus 307 HGSAPD~~~~~IaGk~~~ANP~A~IlS~amML~~LG~~~~~~~l~ 351 (402)
T PRK08299 307 HGTVTRHYRQHQKGEETSTNPIASIFAWTRGLAHRGKLDGNPELV 351 (402)
T ss_pred CCCCcccccccccCCCCccCHHHHHHHHHHHHHHhCCccccchHH
Confidence 999999999999999999999999999999999999999988764
No 9
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type. Prokaryotic NADP-dependent isocitrate dehydrogenases resemble their NAD-dependent counterparts and 3-isopropylmalate dehydrogenase (an NAD-dependent enzyme) more closely than they resemble eukaryotic NADP-dependent isocitrate dehydrogenases.
Probab=89.47 E-value=0.18 Score=41.03 Aligned_cols=32 Identities=16% Similarity=0.005 Sum_probs=26.7
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhcc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKL 75 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkL 75 (83)
||+..++..+ ...||+|+|.+|.--|+|.|.-
T Consensus 339 HGSAPdiAGk------~iANP~a~IlS~amML~~lg~~ 370 (416)
T TIGR00183 339 HGTAPKYAGQ------DKVNPGSIILSGEMMLEHMGWK 370 (416)
T ss_pred CCCchhhcCC------CCCCcHHHHHHHHHHHHHcCCH
Confidence 8888886543 6699999999999999998753
No 10
>PRK00772 3-isopropylmalate dehydrogenase; Provisional
Probab=81.57 E-value=1.9 Score=34.64 Aligned_cols=28 Identities=21% Similarity=0.119 Sum_probs=24.7
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH 71 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h 71 (83)
||+.-+ ++|+ ...||+|+|+||.--|.|
T Consensus 280 HGSApd-----iAGk-~~aNP~a~Ils~ammL~~ 307 (358)
T PRK00772 280 HGSAPD-----IAGK-GIANPIATILSAAMMLRY 307 (358)
T ss_pred CCchhh-----hcCC-CCcCCHHHHHHHHHHHHH
Confidence 888777 6777 679999999999999999
No 11
>PRK07006 isocitrate dehydrogenase; Reviewed
Probab=81.52 E-value=1.1 Score=36.58 Aligned_cols=33 Identities=18% Similarity=0.039 Sum_probs=27.3
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD 76 (83)
||+..+ .+| +...||+|+|.+|.--|+|.|..+
T Consensus 332 HGSAPd-----iAG-k~iANP~a~IlS~amML~~lG~~~ 364 (409)
T PRK07006 332 HGTAPK-----YAG-LDKVNPGSVILSAEMMLRHMGWTE 364 (409)
T ss_pred CCcchh-----hCC-CCCcChHHHHHHHHHHHHHcCCHH
Confidence 788877 346 567999999999999999988654
No 12
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type. The NADP-dependent IDH of Thermus aquaticus thermophilus strain HB8 resembles these NAD-dependent IDH, except for the residues involved in cofactor specificity, much more closely than it resembles other prokaryotic NADP-dependent IDH, including that of Thermus aquaticus strain YT1.
Probab=71.13 E-value=3.8 Score=32.48 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=23.3
Q ss_pred HHhhCCCccCChhHHHHHHHHHHHHhhcc
Q psy12325 47 EHQKGNKTSTNPVASIYAWTQGLQHRAKL 75 (83)
Q Consensus 47 ~hqkG~eTSTNPIAsIFAWTrgL~hRgkL 75 (83)
-.++|+- ..||+|+|.+|.--|+|-|.-
T Consensus 265 pdiaGk~-iaNP~a~Ils~ammL~~lG~~ 292 (333)
T TIGR00175 265 PDIAGQN-IANPTALILSSVMMLNHLGLK 292 (333)
T ss_pred hhhCCCC-ccChHHHHHHHHHHHHHcCCH
Confidence 3467876 699999999999999997753
No 13
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases. This family is closely related to both the LeuB genes found in TIGR00169 and the mitochondrial eukaryotic isocitrate dehydratases found in TIGR00175. All of these are included within the broader subfamily model, pfam00180.
Probab=69.71 E-value=4 Score=32.38 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=25.9
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD 76 (83)
|||.-+ ++|+ .-.||+|+|.|+.-+|.|-|.-+
T Consensus 254 hGsa~d-----iaG~-~~aNp~a~i~A~~~~l~~~g~~~ 286 (322)
T TIGR02088 254 HGSAPD-----IAGK-GIANPTAAILSVAMMLDYLGELE 286 (322)
T ss_pred CCChhH-----hCCC-CCCChHHHHHHHHHHHHHcCCHH
Confidence 555544 5677 66999999999999999987644
No 14
>PLN00118 isocitrate dehydrogenase (NAD+)
Probab=68.15 E-value=6.9 Score=31.92 Aligned_cols=32 Identities=19% Similarity=0.035 Sum_probs=26.6
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhcc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKL 75 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkL 75 (83)
||+.-+ .+|+ .-.||+|+|.++.--|+|-|.-
T Consensus 300 HGSAPd-----IAGk-~iANP~A~IlS~amML~~lG~~ 331 (372)
T PLN00118 300 HGSAPD-----IAGK-NLANPTALLLSAVMMLRHLKLN 331 (372)
T ss_pred CCChhh-----hCCC-CCcCcHHHHHHHHHHHHHcCCh
Confidence 777766 6787 4599999999999999997753
No 15
>PF05712 MRG: MRG; InterPro: IPR008676 This family consists of three different eukaryotic proteins (mortality factor 4 (MORF4/MRG15), male-specific lethal 3(MSL-3) and ESA1-associated factor 3(EAF3)). It is thought that the MRG family is involved in transcriptional regulation via histone acetylation [, ].; GO: 0005634 nucleus; PDB: 2AQL_A 2F5J_A 2LKM_B 2Y0N_D.
Probab=67.43 E-value=2.5 Score=30.15 Aligned_cols=13 Identities=46% Similarity=0.654 Sum_probs=9.9
Q ss_pred HHhHHHHHhhhhc
Q psy12325 14 RYGIEHFLRFRKK 26 (83)
Q Consensus 14 ~~~~~~~~~~~~~ 26 (83)
-||++|+||+--|
T Consensus 140 ~YG~~HLLRL~vk 152 (194)
T PF05712_consen 140 IYGAIHLLRLFVK 152 (194)
T ss_dssp C-BHHHHHHHHHH
T ss_pred hccHHHHHHHHHH
Confidence 5999999997654
No 16
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional
Probab=62.50 E-value=7.1 Score=31.19 Aligned_cols=27 Identities=26% Similarity=0.306 Sum_probs=22.0
Q ss_pred hhCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325 49 QKGNKTSTNPVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 49 qkG~eTSTNPIAsIFAWTrgL~hRgkLD 76 (83)
.+|+ --.||+|+|.++.--|+|-|.-|
T Consensus 265 iAGk-~iANP~a~IlS~ammL~~lG~~~ 291 (330)
T PRK14025 265 IAGK-GIANPTATILTAVLMLRHLGENE 291 (330)
T ss_pred hCCC-CCcCcHHHHHHHHHHHHHcCCHH
Confidence 5664 44999999999999999987644
No 17
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate. IDH is either dependent on NAD+ (1.1.1.41 from EC) or on NADP+ (1.1.1.42 from EC). In eukaryotes there are at least three isozymes of IDH: two are located in the mitochondrial matrix (one NAD+-dependent, the other NADP+-dependent), while the third one (also NADP+-dependent) is cytoplasmic. In Escherichia coli the activity of a NADP+-dependent form of the enzyme is controlled by the phosphorylation of a serine residue; the phosphorylated form of IDH is completely inactivated. 3-isopropylmalate dehydrogenase (1.1.1.85 from EC) (IMDH) [, ] catalyses the third step in the biosynthesis of leucine in bacteria and fungi, the oxidative decarboxylation of 3-isopropylmalate into 2-oxo-4-methylvalerate. Tartrate dehydrogenase (1.1.1.93 from EC) [] catalyses the reduction of tartrate to oxaloglycolate. These enzymes are evolutionary related. To this family also belongs the enzyme tartrate dehydrogenase, which shows strong homology to prokaryotic isopropylmalate dehydrogenases and, to a lesser extent, isocitrate dehydrogenase []. This entry represents a structural domain found in all types of isocitrate dehydrogenase, and in isopropylmalate dehydrogenase and tartrate dehydrogenase. The crystal structure of Escherichia coli isopropylmalate dehydrogenase has been described []. ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 1WAL_A 1CNZ_B 2D4V_C 1CM7_A 4AOY_D 3FMX_X 3FLK_C 1A05_A 1X0L_B 4F7I_D ....
Probab=62.13 E-value=3.7 Score=32.24 Aligned_cols=30 Identities=23% Similarity=0.181 Sum_probs=23.2
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhh
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRA 73 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRg 73 (83)
||+..++- |+-. .||+|+|.|+.--|+|..
T Consensus 276 HGSApdia-----Gk~~-aNP~a~Ils~a~mL~~~l 305 (348)
T PF00180_consen 276 HGSAPDIA-----GKGI-ANPIAMILSAAMMLEHSL 305 (348)
T ss_dssp STTTGGGT-----TSSH-S-THHHHHHHHHHHHHHH
T ss_pred cccccccc-----CCcc-cCcHHHHHHHHHHHHHhc
Confidence 88888754 4444 899999999999999943
No 18
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=57.51 E-value=10 Score=26.75 Aligned_cols=24 Identities=42% Similarity=0.774 Sum_probs=20.0
Q ss_pred ccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325 54 TSTNPVASIYAWTQGLQHRAKLDNTPDLA 82 (83)
Q Consensus 54 TSTNPIAsIFAWTrgL~hRgkLD~n~~L~ 82 (83)
|.++.-+|.-.|.++|++ .||.|.
T Consensus 94 tg~~~~~sL~~WI~~Lq~-----~NP~L~ 117 (126)
T PF14784_consen 94 TGTSDKDSLLSWIRGLQE-----TNPNLA 117 (126)
T ss_pred ccCCCHHHHHHHHHHHHh-----hCCchh
Confidence 678888999999999987 577664
No 19
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=49.84 E-value=9.4 Score=23.14 Aligned_cols=28 Identities=21% Similarity=0.319 Sum_probs=20.5
Q ss_pred ecCCCceeehhHHHHHHhhCCCccCChhHHHHHHHHHH
Q psy12325 32 RETQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTQGL 69 (83)
Q Consensus 32 v~pDG~hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL 69 (83)
+.|||+. +++.|. ++++|..|+.|...-
T Consensus 8 RlpdG~~--~~~~F~--------~~~tl~~l~~fv~~~ 35 (77)
T cd01767 8 RLPDGKR--LEQRFN--------STHKLSDVRDFVESN 35 (77)
T ss_pred EcCCCCE--EEEEeC--------CCCCHHHHHHHHHHc
Confidence 5789883 444343 789999999998753
No 20
>PF06923 GutM: Glucitol operon activator protein (GutM); InterPro: IPR009693 This family consists of several glucitol operon activator (GutM) proteins. Expression of the glucitol (gut) operon in Escherichia coli is regulated by an unusual, complex system, which consists of an activator (encoded by the gutM gene) and a repressor (encoded by the gutR gene) in addition to the cAMP-CRP complex (CRP, cAMP receptor protein). Synthesis of the mRNA, which initiates at the promoter specific to the gutR gene, occurs within the gutM gene. Expressional control of the gut operon appears to occur as a consequence of the antagonistic action of the products of the autogenously regulated gutM and gutR genes [].
Probab=49.11 E-value=22 Score=24.02 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHhHHHHHhhhhcCCcce
Q psy12325 3 LLQGITGFFMMRYGIEHFLRFRKKNSNVG 31 (83)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Vg 31 (83)
+||.+.|+|-+|+=-.+|-+.|+++ .|+
T Consensus 13 ~lQ~~l~~~Qik~f~~~~~~l~~~G-~V~ 40 (109)
T PF06923_consen 13 LLQILLGWFQIKNFNKAYKELRKKG-RVG 40 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCC-cEE
Confidence 6899999999999889999999876 444
No 21
>PRK06451 isocitrate dehydrogenase; Validated
Probab=47.80 E-value=15 Score=30.36 Aligned_cols=31 Identities=16% Similarity=0.045 Sum_probs=24.9
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
||+.-+. +|+ ...||+|+|.++.--|+|-|.
T Consensus 332 HGSAPdi-----AGk-~iANP~a~IlS~amML~~lg~ 362 (412)
T PRK06451 332 HGTAPKY-----AGK-NVANPTGIIKGGELMLRFMGW 362 (412)
T ss_pred CCCcccc-----CCC-CCcCcHHHHHHHHHHHHHcCC
Confidence 7777664 677 669999999999988888664
No 22
>PF08344 TRP_2: Transient receptor ion channel II; InterPro: IPR013555 TRP (transient receptor potential) channels can be described as tetramers formed by subunits with six transmembrane domains and containing cation-selective pores, which in several cases show high calcium permeability. The molecular architecture of TRP channels is reminiscent of voltage-gated channels and comprises six putative transmembrane segments (S1-S6), intracellular N- and C-termini, and a pore-forming reentrant loop between S5 and S6 []. TRP channels represent a superfamily conserved from worms to humans that comprise seven subfamilies []: TRPC (canonical), TRPV (vanilloid), TRPM (melastatin or long TRPs), TRPA (ankyrin), whose only member is the transmembrane protein 1, TRPP(polycystin), TRPML (mucolipin) and TRPN (Nomp-C homologues), which has a single member that can be found in worms, flies, and zebrafish. TRPs are classified essentially according to their primary amino acid sequence rather than selectivity or ligand affinity, due to their heterogenous properties and complex regulation. TRP channels are involved in many physiological functions, ranging from pure sensory functions, such as pheromone signalling, taste transduction, nociception, and temperature sensation, over homeostatic functions, such as Ca2+ and Mg2+ reabsorption and osmoregulation, to many other motile functions, such as muscle contraction and vaso-motor control []. This domain is found in Trp proteins, generally located to the C terminus of the Ankyrin repeats (IPR002110 from INTERPRO).
Probab=46.06 E-value=24 Score=22.43 Aligned_cols=23 Identities=22% Similarity=0.491 Sum_probs=20.8
Q ss_pred ccCChhHHHHHHHHHHHHhhccC
Q psy12325 54 TSTNPVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 54 TSTNPIAsIFAWTrgL~hRgkLD 76 (83)
||.+||-..|-++.-|++-+..+
T Consensus 37 ts~DPi~~AF~Ls~eL~~la~~E 59 (63)
T PF08344_consen 37 TSDDPILTAFELSWELRELARIE 59 (63)
T ss_pred cCccHHHHHHHHHHHHHHHHHcc
Confidence 79999999999999999888765
No 23
>PRK10234 DNA-binding transcriptional activator GutM; Provisional
Probab=44.09 E-value=29 Score=24.31 Aligned_cols=26 Identities=12% Similarity=-0.056 Sum_probs=22.9
Q ss_pred cchhhHHHHHHHHhHHHHHhhhhcCC
Q psy12325 3 LLQGITGFFMMRYGIEHFLRFRKKNS 28 (83)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 28 (83)
++|.+.|||-||+==.+|-+.|+++.
T Consensus 14 llQ~~lg~~Qik~Fn~~~~~L~~~G~ 39 (118)
T PRK10234 14 CAQLALGGWQISRFNRAFDTLCQQGR 39 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 68999999999998899999998864
No 24
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=39.98 E-value=15 Score=27.13 Aligned_cols=11 Identities=64% Similarity=1.138 Sum_probs=9.0
Q ss_pred chhhHHHHHHH
Q psy12325 4 LQGITGFFMMR 14 (83)
Q Consensus 4 ~~~~~~~~~~~ 14 (83)
|.+|.||||.|
T Consensus 20 l~~IGGfFMFR 30 (141)
T PF11084_consen 20 LMAIGGFFMFR 30 (141)
T ss_pred HHHHhHHHHHH
Confidence 46789999987
No 25
>PRK12670 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=39.43 E-value=22 Score=23.82 Aligned_cols=24 Identities=29% Similarity=0.318 Sum_probs=18.0
Q ss_pred cCChhHHHHHHHHHHHHhhccCCCC
Q psy12325 55 STNPVASIYAWTQGLQHRAKLDNTP 79 (83)
Q Consensus 55 STNPIAsIFAWTrgL~hRgkLD~n~ 79 (83)
-|||+++ .+-.|+--++++-|+|+
T Consensus 74 lT~Pvaa-h~iarAa~~~~~~~~~~ 97 (99)
T PRK12670 74 ITSTTAS-YALARSAYKSKKKDDKD 97 (99)
T ss_pred HHHHHHH-HHHHHHHHHcCCCCCCC
Confidence 4788888 56688877778777765
No 26
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=38.94 E-value=23 Score=22.85 Aligned_cols=25 Identities=40% Similarity=0.724 Sum_probs=18.5
Q ss_pred cchh-hHHHHHHHHhHHHHHhhhhcCCcc
Q psy12325 3 LLQG-ITGFFMMRYGIEHFLRFRKKNSNV 30 (83)
Q Consensus 3 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~V 30 (83)
|+-| +.|||..|+-.|-.| ++|..+
T Consensus 7 li~G~~~Gff~ar~~~~k~l---~~NPpi 32 (64)
T PF03672_consen 7 LIVGAVIGFFIARKYMEKQL---KENPPI 32 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHCCCC
Confidence 3444 689999999888777 567665
No 27
>TIGR00169 leuB 3-isopropylmalate dehydrogenase. This model will not find all isopropylmalate dehydrogenases; the enzyme from Sulfolobus sp. strain 7 is more similar to mitochondrial NAD-dependent isocitrate dehydrogenases than to other known isopropylmalate dehydrogenases and was omitted to improve the specificity of the model. It scores below the cutoff and below some enzymes known not to be isopropylmalate dehydrogenase.
Probab=36.76 E-value=50 Score=26.58 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=23.5
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH 71 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h 71 (83)
||+.-+ .+|+ --.||+|+|.++.--|.|
T Consensus 277 HGSAPd-----iAGk-~iANP~a~IlS~amML~~ 304 (349)
T TIGR00169 277 HGSAPD-----IAGK-GIANPIAQILSAAMMLRY 304 (349)
T ss_pred CCChhH-----hcCC-CCCChHHHHHHHHHHHHh
Confidence 777766 6777 559999999999999988
No 28
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=36.50 E-value=22 Score=27.31 Aligned_cols=61 Identities=20% Similarity=0.221 Sum_probs=49.7
Q ss_pred HHHHHhhhhcCCcceecCCCceeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325 17 IEHFLRFRKKNSNVGRETQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82 (83)
Q Consensus 17 ~~~~~~~~~~~~~Vgv~pDG~hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~ 82 (83)
..||.-.++.=...| ..-|-+.=|.--++.=+.|+.+|++-+-.-.+-++-|| ||-||.++
T Consensus 112 arHf~ll~~rL~~lG----~~yGd~P~h~gLw~~~~~t~~dl~~R~A~vp~~~EArG-LD~~p~~~ 172 (253)
T PF04305_consen 112 ARHFRLLRERLEELG----SDYGDLPAHDGLWEAAEQTAHDLLARMALVPRVLEARG-LDVTPFII 172 (253)
T ss_pred HHHHHHHHHHHHHhC----CCCCCcchhhHHHHHHHHhccCHHHHHHHHHHHHHhhC-CCCCHHHH
Confidence 568877766654443 35678888888888899999999999999999999999 99988764
No 29
>PF03049 Herpes_UL79: UL79 family; InterPro: IPR004290 Members of the herpesvirus UL79 family also contain proteins annotated as U52; these are functionally uncharacterised.
Probab=36.15 E-value=14 Score=29.19 Aligned_cols=38 Identities=21% Similarity=0.441 Sum_probs=31.6
Q ss_pred ccchhhHHHHHHHHhHHHHHhhhhcCCcceecCCCc----eeehhHH
Q psy12325 2 GLLQGITGFFMMRYGIEHFLRFRKKNSNVGRETQGK----MIYFLTF 44 (83)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vgv~pDG~----hGTVTRH 44 (83)
++++|++.|++-+.|+.|.+++...| -.||+ +|||.-|
T Consensus 116 ~~~~~l~~~i~~~lGL~~~v~i~~~~-----l~DGN~LFnLGsv~p~ 157 (253)
T PF03049_consen 116 ALLKGLCRFIFRHLGLTHAVKIPPEN-----LRDGNILFNLGSVYPH 157 (253)
T ss_pred hHHHHHHHHHHHhcCCccCCCCChhh-----ccccceEEEccchhhh
Confidence 46899999999999999999887766 46888 8888644
No 30
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=35.27 E-value=22 Score=21.67 Aligned_cols=27 Identities=19% Similarity=0.486 Sum_probs=19.7
Q ss_pred ecCCCceeehhHHHHHHhhCCCccCChhHHHHHHHHH
Q psy12325 32 RETQGKMIYFLTFFREHQKGNKTSTNPVASIYAWTQG 68 (83)
Q Consensus 32 v~pDG~hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrg 68 (83)
+-|||+. +.+.| -++++|..|++|...
T Consensus 10 RlPdG~r--i~~~F--------~~~~tl~~v~~~v~~ 36 (80)
T smart00166 10 RLPDGSR--LVRRF--------PSSDTLRTVYEFVSA 36 (80)
T ss_pred EcCCCCE--EEEEe--------CCCCcHHHHHHHHHH
Confidence 5688885 33334 378999999999954
No 31
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=34.86 E-value=42 Score=16.86 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=14.2
Q ss_pred ChhHHHHHHHHHHHHhh
Q psy12325 57 NPVASIYAWTQGLQHRA 73 (83)
Q Consensus 57 NPIAsIFAWTrgL~hRg 73 (83)
||++.|.+....|..+.
T Consensus 17 ~pl~~i~~~~~~l~~~~ 33 (65)
T cd00082 17 TPLTAIRGALELLEEEL 33 (65)
T ss_pred chHHHHHHHHHHHHhcc
Confidence 89999999988887643
No 32
>PHA03364 hypothetical protein; Provisional
Probab=34.09 E-value=14 Score=29.28 Aligned_cols=38 Identities=21% Similarity=0.410 Sum_probs=31.3
Q ss_pred ccchhhHHHHHHHHhHHHHHhhhhcCCcceecCCCc----eeehhHH
Q psy12325 2 GLLQGITGFFMMRYGIEHFLRFRKKNSNVGRETQGK----MIYFLTF 44 (83)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vgv~pDG~----hGTVTRH 44 (83)
.+++|++.|++-+.|+.|..++-..| -.||+ +|||.-|
T Consensus 118 ~~~~~l~~~v~~~lGL~~~v~i~~~~-----l~DGN~LFnLGSV~p~ 159 (264)
T PHA03364 118 ALLGGLCRFVFRELGLTHAVKIPPEN-----LRDGNILFNLGSVYPH 159 (264)
T ss_pred hHHHHHHHHHHHhcCCccCCCCChHH-----ccccceEEEccchhHh
Confidence 46899999999999999999887665 36888 8888644
No 33
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=33.40 E-value=30 Score=22.88 Aligned_cols=48 Identities=19% Similarity=-0.005 Sum_probs=31.9
Q ss_pred hHHHHHhhhhcCCcceecCCCceeehhHHHHHHhhCCCccCChhHHHHH
Q psy12325 16 GIEHFLRFRKKNSNVGRETQGKMIYFLTFFREHQKGNKTSTNPVASIYA 64 (83)
Q Consensus 16 ~~~~~~~~~~~~~~Vgv~pDG~hGTVTRHyr~hqkG~eTSTNPIAsIFA 64 (83)
++...++--+++..|+.-|||..+... ....=-=|+++++.+-+...|
T Consensus 79 ~~~~~~~~l~~g~~v~i~pD~~~~~~~-~~~~~F~G~~~~~~~G~~~lA 126 (192)
T cd07984 79 GLRELIRALKKGEIVGILPDQDPGRKG-GVFVPFFGRPAATPTGPARLA 126 (192)
T ss_pred hHHHHHHHHhCCCEEEEEeCCCCCCCC-CEEeccCCCCccchHHHHHHH
Confidence 456677777888899999999976431 111112377888877776554
No 34
>KOG4790|consensus
Probab=32.18 E-value=32 Score=28.77 Aligned_cols=33 Identities=15% Similarity=0.037 Sum_probs=27.7
Q ss_pred HHhhCCCccCChhHHHHHHHHHHHHhhccCCCCc
Q psy12325 47 EHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPD 80 (83)
Q Consensus 47 ~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~ 80 (83)
.|-+++.++-|++-| -||+.|+.|.++-|+.++
T Consensus 37 l~~~~~~sv~~~lis-~vw~la~~h~~~rds~~d 69 (362)
T KOG4790|consen 37 LAFLLLPSVIISLIS-LVWMLASYHKWLRDSRDD 69 (362)
T ss_pred HHHccCcHHHHHHHH-HHHHHHHHhhhccccccc
Confidence 356688888888777 799999999999998775
No 35
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.55 E-value=22 Score=27.64 Aligned_cols=23 Identities=13% Similarity=0.085 Sum_probs=19.0
Q ss_pred HhhhhcCCcceecCCCceeehhH
Q psy12325 21 LRFRKKNSNVGRETQGKMIYFLT 43 (83)
Q Consensus 21 ~~~~~~~~~Vgv~pDG~hGTVTR 43 (83)
+..-|++.+|...|||-+|.|.+
T Consensus 111 ~k~Lk~G~~i~itpDgPkGp~~~ 133 (214)
T COG2121 111 LKALKQGKSIAITPDGPKGPVHK 133 (214)
T ss_pred HHHHhCCCcEEEcCCCCCCCcee
Confidence 34457899999999999998765
No 36
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=31.47 E-value=4.6 Score=28.72 Aligned_cols=11 Identities=55% Similarity=1.225 Sum_probs=9.7
Q ss_pred hhhHHHHHHHH
Q psy12325 5 QGITGFFMMRY 15 (83)
Q Consensus 5 ~~~~~~~~~~~ 15 (83)
-||||||.+.|
T Consensus 26 ~GITGFyl~eY 36 (110)
T PF10126_consen 26 GGITGFYLHEY 36 (110)
T ss_pred cCccEEEeEee
Confidence 58999999887
No 37
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=31.03 E-value=15 Score=30.30 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=20.7
Q ss_pred HHhhhhcCC--cceecCCCceeehhH-HH
Q psy12325 20 FLRFRKKNS--NVGRETQGKMIYFLT-FF 45 (83)
Q Consensus 20 ~~~~~~~~~--~Vgv~pDG~hGTVTR-Hy 45 (83)
||-||+++| -|+|.|||+--+.+| |.
T Consensus 21 ~LifR~~gs~pvvLV~PDGsk~ya~~~~p 49 (374)
T TIGR03503 21 LLFFREPGSPPVILVRPDGSKYYAWRVHP 49 (374)
T ss_pred EEEEecCCCCCeEEECCCCcEEeccCCCC
Confidence 467888874 578999999888888 64
No 38
>KOG4461|consensus
Probab=29.69 E-value=35 Score=29.39 Aligned_cols=16 Identities=25% Similarity=0.671 Sum_probs=13.8
Q ss_pred CChhHHHHHHHHHHHH
Q psy12325 56 TNPVASIYAWTQGLQH 71 (83)
Q Consensus 56 TNPIAsIFAWTrgL~h 71 (83)
.|.|+|.|||+.|=+|
T Consensus 352 s~AI~S~fawl~AQA~ 367 (473)
T KOG4461|consen 352 SQAIISMFAWLCAQAH 367 (473)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4889999999998766
No 39
>PF04028 DUF374: Domain of unknown function (DUF374); InterPro: IPR007172 This is a bacterial domain of unknown function.
Probab=29.15 E-value=53 Score=20.96 Aligned_cols=22 Identities=18% Similarity=0.188 Sum_probs=17.5
Q ss_pred HHHHhhhhcCCcceecCCCcee
Q psy12325 18 EHFLRFRKKNSNVGRETQGKMI 39 (83)
Q Consensus 18 ~~~~~~~~~~~~Vgv~pDG~hG 39 (83)
.-.++.-|++.+|+..|||-.|
T Consensus 50 r~~~~~lk~G~~~~itpDGPrG 71 (74)
T PF04028_consen 50 REMLRALKEGYSIAITPDGPRG 71 (74)
T ss_pred HHHHHHHHCCCeEEEeCCCCCC
Confidence 3456667789999999999765
No 40
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.47 E-value=53 Score=24.40 Aligned_cols=46 Identities=22% Similarity=0.237 Sum_probs=36.0
Q ss_pred HhHHHHHhhhhcCCcceecCCCce----eehhHHHHHHhhCCCccCChhHHHHHH
Q psy12325 15 YGIEHFLRFRKKNSNVGRETQGKM----IYFLTFFREHQKGNKTSTNPVASIYAW 65 (83)
Q Consensus 15 ~~~~~~~~~~~~~~~Vgv~pDG~h----GTVTRHyr~hqkG~eTSTNPIAsIFAW 65 (83)
-++...++-.|+|..|+.-+|-.. |.....| |++|+|+|.+..+|=
T Consensus 168 ~~~r~~~~~Lk~g~~v~~l~Dq~~~~~~gv~v~FF-----G~~a~t~~~~a~LA~ 217 (293)
T PRK06946 168 DSARQVLRWLRDGKPVMLGADMDFGLRDSTFVPFF-----GVPACTLTAVSRLAR 217 (293)
T ss_pred chHHHHHHHHhCCCeEEEeCCCCCCCCCCeEeCCC-----CCCcHHhHHHHHHHH
Confidence 357788899999999998888763 4555555 899999999887763
No 41
>TIGR02924 ICDH_alpha isocitrate dehydrogenase. This family of mainly alphaproteobacterial enzymes is a member of the isocitrate/isopropylmalate dehydrogenase superfamily described by pfam00180. Every member of the seed of this model appears to have a TCA cycle lacking only a determined isocitrate dehydrogenase. The precise identity of the cofactor (NADH -- 1.1.1.41 vs. NADPH -- 1.1.1.42) is unclear.
Probab=26.84 E-value=43 Score=28.42 Aligned_cols=26 Identities=31% Similarity=0.319 Sum_probs=21.5
Q ss_pred hCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325 50 KGNKTSTNPVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 50 kG~eTSTNPIAsIFAWTrgL~hRgkLD 76 (83)
+|+- -.||+|+|.|+.--|+|-|.-|
T Consensus 267 AGk~-iANP~a~IlSaamML~hLG~~~ 292 (473)
T TIGR02924 267 AGQN-IANPSGLLNAAIQMLVHIGQSD 292 (473)
T ss_pred CCCC-ccChHHHHHHHHHHHHHcCCHH
Confidence 5663 5999999999999999987644
No 42
>PRK08997 isocitrate dehydrogenase; Provisional
Probab=26.58 E-value=46 Score=26.73 Aligned_cols=33 Identities=24% Similarity=0.081 Sum_probs=24.3
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD 76 (83)
||+--+ .+|+- --||+|+|.+..--|+|-|.-+
T Consensus 262 HGSAPd-----IAGk~-iANP~a~IlS~amML~~lG~~~ 294 (334)
T PRK08997 262 HGSAPD-----IAGKN-LANPTSVILAAIQMLEYLGMPD 294 (334)
T ss_pred CCchhh-----hCCCC-ccCcHHHHHHHHHHHHHcCChh
Confidence 555444 35655 4899999999999999977543
No 43
>COG5558 Transposase [DNA replication, recombination, and repair]
Probab=25.40 E-value=33 Score=27.43 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=24.3
Q ss_pred HH-HhhhhcCCcceecCCCc--eeehhHHHHH--HhhCC
Q psy12325 19 HF-LRFRKKNSNVGRETQGK--MIYFLTFFRE--HQKGN 52 (83)
Q Consensus 19 ~~-~~~~~~~~~Vgv~pDG~--hGTVTRHyr~--hqkG~ 52 (83)
|| |-.++.+-+.--|-||+ -=|||+|||. -.+||
T Consensus 75 ~fil~~k~~gv~~~~~~d~tgysltit~h~rs~~~k~g~ 113 (261)
T COG5558 75 LFILLLREEGVSGDFSGDGTGYSLTITKHYRSNPKRKGK 113 (261)
T ss_pred hheeeehhcCccccccCCCCcceEEeehhhhcChhhcCc
Confidence 45 34566777777789998 4499999997 34454
No 44
>PLN00123 isocitrate dehydrogenase (NAD+)
Probab=25.28 E-value=49 Score=27.01 Aligned_cols=22 Identities=27% Similarity=0.251 Sum_probs=18.5
Q ss_pred cCChhHHHHHHHHHHHHhhccC
Q psy12325 55 STNPVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 55 STNPIAsIFAWTrgL~hRgkLD 76 (83)
-.||+|+|.++.--|+|-|.-+
T Consensus 298 iANP~a~IlS~amML~~lG~~~ 319 (360)
T PLN00123 298 KANPVALLLSSAMMLRHLQFPS 319 (360)
T ss_pred ccChHHHHHHHHHHHHHcCChH
Confidence 3899999999999999977543
No 45
>PF10484 MRP-S23: Mitochondrial ribosomal protein S23; InterPro: IPR023611 This entry represents a domain found in both the mitochondrial ribosomal 23S and 25S proteins. The function of this conserved region is not known. In Saccharomyces cerevisiae (Baker's yeast) the mature mitochondrial ribosomes consist of a small (37S) and a large (54S) subunit. The 37S subunit contains at least 33 different proteins and 1 molecule of RNA (15S). The 54S subunit contains at least 45 different proteins and 1 molecule of RNA (21S) [, ].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome
Probab=25.00 E-value=50 Score=23.75 Aligned_cols=19 Identities=16% Similarity=0.473 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHhhccC
Q psy12325 58 PVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 58 PIAsIFAWTrgL~hRgkLD 76 (83)
=++|||..+++|...|.+.
T Consensus 7 k~GtIftRv~~LlrsG~~k 25 (127)
T PF10484_consen 7 KIGTIFTRVRGLLRSGAMK 25 (127)
T ss_pred hccchhHHHHHHHHcCCCC
Confidence 3799999999999999885
No 46
>PRK09222 isocitrate dehydrogenase; Validated
Probab=24.21 E-value=52 Score=27.99 Aligned_cols=26 Identities=27% Similarity=0.333 Sum_probs=21.2
Q ss_pred hCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325 50 KGNKTSTNPVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 50 kG~eTSTNPIAsIFAWTrgL~hRgkLD 76 (83)
+|+- --||+|+|.|..--|.|-|.-|
T Consensus 271 AGk~-iANP~a~IlSaamML~hlG~~~ 296 (482)
T PRK09222 271 AGKN-IANPSGLLNAAVMMLVHIGQFD 296 (482)
T ss_pred cCCC-ccCcHHHHHHHHHHHHHcCChH
Confidence 5664 4899999999999999977644
No 47
>KOG1011|consensus
Probab=23.40 E-value=51 Score=30.92 Aligned_cols=54 Identities=35% Similarity=0.332 Sum_probs=31.7
Q ss_pred chhhHHHHHHHHhHH-------HHHhhhhcCCcceecCCCc--eeehhHHHHHHhhCCCccCChhHH
Q psy12325 4 LQGITGFFMMRYGIE-------HFLRFRKKNSNVGRETQGK--MIYFLTFFREHQKGNKTSTNPVAS 61 (83)
Q Consensus 4 ~~~~~~~~~~~~~~~-------~~~~~~~~~~~Vgv~pDG~--hGTVTRHyr~hqkG~eTSTNPIAs 61 (83)
-|-|.-=|.|||||| ||--.-.|-- ||.=- +.|.--.-.+|-+--..|||--|+
T Consensus 474 aqeivdefamrygiesiyqamthfacl~skym----cpgvpavmstllaninayyahttastnvsas 536 (1283)
T KOG1011|consen 474 AQEIVDEFAMRYGIESIYQAMTHFACLSSKYM----CPGVPAVMSTLLANINAYYAHTTASTNVSAS 536 (1283)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhccc----CCCcHHHHHHHHHhhhHHhhccccccccCcc
Confidence 367888899999998 6665544432 44211 334444444444445567776554
No 48
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=23.18 E-value=45 Score=25.04 Aligned_cols=47 Identities=19% Similarity=0.141 Sum_probs=35.5
Q ss_pred HHhHHHHHhhhhcCCcceecCCCce----eehhHHHHHHhhCCCccCChhHHHHHH
Q psy12325 14 RYGIEHFLRFRKKNSNVGRETQGKM----IYFLTFFREHQKGNKTSTNPVASIYAW 65 (83)
Q Consensus 14 ~~~~~~~~~~~~~~~~Vgv~pDG~h----GTVTRHyr~hqkG~eTSTNPIAsIFAW 65 (83)
+-|+...++-.|+|..|+.-+|-.. |.....| |++++|.|.+..+|=
T Consensus 188 ~~~~r~i~kaLk~g~~v~il~Dq~~~~~~gv~v~Ff-----G~~a~t~~g~a~LA~ 238 (314)
T PRK08943 188 EDGIKPFISSVRQGYWGYYLPDEDHGPEHSVFVDFF-----ATYKATLPGIGRLAK 238 (314)
T ss_pred chhHHHHHHHHhCCCeEEEeCCCCCCCCCCEEeCCC-----CCchhHhHHHHHHHH
Confidence 3457788888899999998888764 3444444 889999998887763
No 49
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the dimerisation and phosphoacceptor domain found in histidine kinases. It has been found in bacterial sensor protein/histidine kinases. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms []. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and the phosphotransfer from aspartyl phosphate back to ADP or to water []. The homodimeric domain includes the site of histidine autophosphorylation and phosphate transfer reactions. The structure of the homodimeric domain comprises a closed, four-helical bundle with a left-handed twist, formed by two identical alpha-hairpin subunits.; GO: 0000155 two-component sensor activity, 0007165 signal transduction, 0016020 membrane; PDB: 3DGE_A 2C2A_A 3A0R_A 4EW8_A 2LFS_B 2LFR_B 3JZ3_A 1JOY_B 3ZRW_C 3ZRV_A ....
Probab=22.82 E-value=56 Score=18.28 Aligned_cols=15 Identities=27% Similarity=0.534 Sum_probs=13.5
Q ss_pred ChhHHHHHHHHHHHH
Q psy12325 57 NPVASIYAWTQGLQH 71 (83)
Q Consensus 57 NPIAsIFAWTrgL~h 71 (83)
||+++|.+.+..|..
T Consensus 15 ~PL~~i~~~~~~l~~ 29 (68)
T PF00512_consen 15 NPLTAIRGYLELLER 29 (68)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHH
Confidence 899999999998876
No 50
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=22.00 E-value=62 Score=24.04 Aligned_cols=55 Identities=29% Similarity=0.546 Sum_probs=34.2
Q ss_pred ccchhhHHHHHHHHhHH----HHHhhhhcCCcceecCCCcee------ehhHHHHHHhhCCCc-----cCChhHH
Q psy12325 2 GLLQGITGFFMMRYGIE----HFLRFRKKNSNVGRETQGKMI------YFLTFFREHQKGNKT-----STNPVAS 61 (83)
Q Consensus 2 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Vgv~pDG~hG------TVTRHyr~hqkG~eT-----STNPIAs 61 (83)
|+.-||-|..+. +|. +|.+-+||..-+ +.|||.- -+++-|+.- -||++ |.+|+++
T Consensus 53 GvVVGVGg~ill--~il~lvf~~c~r~kktdfi--dSdGkvvtay~~n~~~~~w~~l-~Gk~~~~~y~s~splg~ 122 (154)
T PF04478_consen 53 GVVVGVGGPILL--GILALVFIFCIRRKKTDFI--DSDGKVVTAYRSNKLTKWWYSL-LGKKISDKYESNSPLGS 122 (154)
T ss_pred EEEecccHHHHH--HHHHhheeEEEecccCccc--cCCCcEEEEEcCchHHHHHHHH-hCCccccccccCCCCCC
Confidence 556666665553 222 222334444455 9999955 488888884 48887 6678776
No 51
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=21.44 E-value=52 Score=25.82 Aligned_cols=26 Identities=27% Similarity=0.542 Sum_probs=21.8
Q ss_pred hhHHHHHHHHHHHHhhccCCCCcccC
Q psy12325 58 PVASIYAWTQGLQHRAKLDNTPDLAR 83 (83)
Q Consensus 58 PIAsIFAWTrgL~hRgkLD~n~~L~~ 83 (83)
|.=--|+|.+|+.-.--+|.+|++++
T Consensus 54 Ppfwa~~WagG~~lAR~i~~~PetVr 79 (218)
T COG3897 54 PPFWAFAWAGGQVLARYIDDHPETVR 79 (218)
T ss_pred chHHHHHHhhhHHHHHHHhcCccccc
Confidence 55556999999999889999999864
No 52
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=20.53 E-value=85 Score=24.89 Aligned_cols=53 Identities=17% Similarity=0.201 Sum_probs=30.4
Q ss_pred ccch-hhHHHHHHHHhHHHHHhhhhcCCcceecCCCceeehhHHHHHHhhCCCccCChhH
Q psy12325 2 GLLQ-GITGFFMMRYGIEHFLRFRKKNSNVGRETQGKMIYFLTFFREHQKGNKTSTNPVA 60 (83)
Q Consensus 2 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Vgv~pDG~hGTVTRHyr~hqkG~eTSTNPIA 60 (83)
|++- ++.|--+.+|+|+ |.+......+|-..+.+.+-+++-..+++++.+++.
T Consensus 167 Glv~G~liGgpi~~~lir------k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~i 220 (368)
T PF03616_consen 167 GLVVGGLIGGPIANWLIR------KGKLKPKKEPDELKEYLRKGEERPSAGRPITSSSLI 220 (368)
T ss_pred HHHHHHHHHHHHHHHHHH------cCCCCCCCccccccccccccccccccccCCCHHHHH
Confidence 4444 3667777888875 333333334554444555556665666777666653
No 53
>PF00973 Paramyxo_ncap: Paramyxovirus nucleocapsid protein; InterPro: IPR002021 The nucleocapsid protein is referred to as NP. NP is is the major structural component of the nucleocapsid. The protein is approx. 58 kDa. 2600 NP molecules go to tightly encapsidate the viral RNA. NP interacts with several other viral encoded proteins, all of which are involved in controlling replication: NP-NP, NP-P, NP-(PL), and NP-V [, , ].; GO: 0005198 structural molecule activity, 0019013 viral nucleocapsid; PDB: 1QLF_C 1FZO_P 1T6O_B 1CE6_C.
Probab=20.47 E-value=34 Score=29.44 Aligned_cols=15 Identities=47% Similarity=1.236 Sum_probs=0.0
Q ss_pred hhhHHHHH-HHHhHHH
Q psy12325 5 QGITGFFM-MRYGIEH 19 (83)
Q Consensus 5 ~~~~~~~~-~~~~~~~ 19 (83)
.|.+|||+ .|||||-
T Consensus 264 aGla~FflTikygi~T 279 (524)
T PF00973_consen 264 AGLAGFFLTIKYGIGT 279 (524)
T ss_dssp ----------------
T ss_pred cchHHHHHHHHhhccc
Confidence 37788887 6899883
Done!