Query psy12325
Match_columns 83
No_of_seqs 103 out of 294
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 16:09:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4aoy_A Isocitrate dehydrogenas 99.2 2.4E-12 8.2E-17 101.4 2.2 53 29-81 291-349 (402)
2 3us8_A Isocitrate dehydrogenas 99.1 2E-11 6.9E-16 96.7 3.1 52 30-81 315-373 (427)
3 1lwd_A Isocitrate dehydrogenas 99.0 1.4E-10 4.6E-15 91.1 3.1 52 30-81 294-352 (413)
4 2uxq_A Isocitrate dehydrogenas 99.0 2.4E-10 8.3E-15 89.4 3.1 52 30-81 291-348 (402)
5 2qfy_A Isocitrate dehydrogenas 98.9 1E-09 3.5E-14 86.6 3.3 51 32-82 312-369 (427)
6 1zor_A Isocitrate dehydrogenas 98.8 1.4E-09 4.6E-14 85.0 2.9 52 30-81 289-346 (399)
7 1wpw_A 3-isopropylmalate dehyd 98.2 7.2E-07 2.5E-11 68.9 3.1 45 32-82 245-294 (336)
8 2d1c_A Isocitrate dehydrogenas 96.4 0.0016 5.4E-08 53.2 2.6 38 32-75 269-311 (496)
9 2y3z_A 3-isopropylmalate dehyd 96.3 0.0027 9.1E-08 49.5 3.7 37 32-74 265-307 (359)
10 1w0d_A 3-isopropylmalate dehyd 96.2 0.0036 1.2E-07 48.3 3.8 37 32-74 257-301 (337)
11 3blx_A Isocitrate dehydrogenas 96.2 0.0022 7.6E-08 49.8 2.7 36 33-74 263-304 (349)
12 3blx_B Isocitrate dehydrogenas 96.1 0.0043 1.5E-07 48.3 3.7 36 33-74 271-311 (354)
13 1x0l_A Homoisocitrate dehydrog 96.0 0.0048 1.6E-07 47.6 3.5 36 33-74 249-289 (333)
14 1a05_A IPMDH, IMDH, 3-isopropy 95.9 0.0047 1.6E-07 47.9 3.0 29 38-72 278-306 (358)
15 3flk_A Tartrate dehydrogenase/ 95.7 0.0069 2.4E-07 47.2 3.3 33 38-76 284-316 (364)
16 1hqs_A Isocitrate dehydrogenas 95.5 0.0084 2.9E-07 47.5 3.2 31 38-74 345-375 (423)
17 2e0c_A 409AA long hypothetical 95.3 0.0094 3.2E-07 47.0 2.8 31 38-74 330-360 (409)
18 1tyo_A Isocitrate dehydrogenas 95.2 0.011 3.6E-07 47.2 2.9 36 33-74 333-374 (435)
19 1cnz_A IPMDH, IMDH, protein (3 95.2 0.013 4.6E-07 45.5 3.4 35 32-72 272-312 (363)
20 2d4v_A Isocitrate dehydrogenas 94.8 0.0085 2.9E-07 47.7 1.3 31 38-74 352-382 (429)
21 2iv0_A Isocitrate dehydrogenas 94.3 0.018 6.1E-07 45.5 2.1 31 38-74 333-363 (412)
22 3dms_A Isocitrate dehydrogenas 92.2 0.086 2.9E-06 41.8 3.0 31 38-74 349-379 (427)
23 1vlc_A 3-isopropylmalate dehyd 91.2 0.11 3.7E-06 40.6 2.5 29 38-72 286-314 (366)
24 3r8w_A 3-isopropylmalate dehyd 88.0 0.47 1.6E-05 37.7 3.9 30 38-73 321-351 (405)
25 3ty4_A Probable homoisocitrate 87.9 0.29 9.9E-06 38.3 2.6 30 38-73 292-321 (366)
26 3vmk_A 3-isopropylmalate dehyd 86.5 0.49 1.7E-05 37.1 3.2 30 38-73 293-323 (375)
27 3u1h_A 3-isopropylmalate dehyd 74.2 2.6 8.8E-05 33.4 3.4 28 38-71 300-327 (390)
28 3udu_A 3-isopropylmalate dehyd 74.2 2.9 9.8E-05 32.6 3.7 28 38-71 281-308 (361)
29 3ol3_A Putative uncharacterize 60.8 2.8 9.7E-05 28.2 1.0 17 52-68 6-22 (107)
30 2f5j_A Mortality factor 4-like 52.5 3.6 0.00012 28.7 0.4 15 12-26 105-119 (181)
31 2y0n_A MALE-specific lethal 3 51.6 3.7 0.00013 29.0 0.4 14 13-26 142-155 (211)
32 2ygu_A Venom allergen 2; hydro 34.9 25 0.00084 24.6 2.5 29 49-77 20-48 (125)
33 3nrw_A Phage integrase/site-sp 28.1 92 0.0032 18.1 4.7 64 14-80 33-101 (117)
34 2hz5_A Dynein light chain 2A, 23.1 12 0.0004 24.5 -0.9 18 20-37 78-95 (106)
No 1
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A
Probab=99.22 E-value=2.4e-12 Score=101.38 Aligned_cols=53 Identities=38% Similarity=0.580 Sum_probs=32.0
Q ss_pred cceecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325 29 NVGRETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81 (83)
Q Consensus 29 ~Vgv~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L 81 (83)
|+-++|||. |||+.+||++|++|+.+|.||+|+|+||+..|+|+|.+|+|++|
T Consensus 291 sanig~~~~~~fEp~HGSApd~~~~~iaGk~~~aNP~A~Ils~a~mL~~~g~~~~~~~l 349 (402)
T 4aoy_A 291 SVLVSPDGKYEFEAAHGTVTRHYYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKEL 349 (402)
T ss_dssp EEEECTTCCEEEEC-----------------CCCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccccCCCCceEEeeccCCccccchhhccCCCcCcCcHHHHHHHHHHHHHhccccCCchH
Confidence 334478885 99999999999999999999999999999999999999988765
No 2
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti}
Probab=99.12 E-value=2e-11 Score=96.74 Aligned_cols=52 Identities=52% Similarity=0.788 Sum_probs=47.2
Q ss_pred ceecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325 30 VGRETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81 (83)
Q Consensus 30 Vgv~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L 81 (83)
+-.+|||+ |||+.+||++|++|+.+|.||+|+|++|+..|+|+|.+|+|++|
T Consensus 315 anig~~~~~a~fEp~HGSAPd~~~~~iAGk~i~ANP~A~IlS~ammL~hlG~~~~~~~l 373 (427)
T 3us8_A 315 VLMTPDGKTVEAEAAHGTVTRHYRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAEL 373 (427)
T ss_dssp EEECTTSCCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred eEECCCCCeEEEeCCCCCcCCccchhcCCCCceeCHHHHHHHHHHHHHHhccccccchh
Confidence 33467883 99999999999999999999999999999999999999998765
No 3
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A*
Probab=99.00 E-value=1.4e-10 Score=91.13 Aligned_cols=52 Identities=56% Similarity=0.820 Sum_probs=47.1
Q ss_pred ceecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325 30 VGRETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81 (83)
Q Consensus 30 Vgv~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L 81 (83)
+-.+|||+ |||+.+||++|++|+.+|.||+|+|+||+..|+|.|..|+||++
T Consensus 294 anig~~~~~~~fEpvHGSAPdi~~~~~aGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l 352 (413)
T 1lwd_A 294 VLVCPDGKTIEAEAAHGTVTRHYREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDL 352 (413)
T ss_dssp EEECTTSSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ceeCCCCCceEEeCCCCChhhhhhhhhcCCCCccChHHHHHHHHHHHHHcCCccccchh
Confidence 34478885 99999999999999999999999999999999999999887665
No 4
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A*
Probab=98.96 E-value=2.4e-10 Score=89.42 Aligned_cols=52 Identities=48% Similarity=0.683 Sum_probs=47.3
Q ss_pred ceecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325 30 VGRETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81 (83)
Q Consensus 30 Vgv~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L 81 (83)
.-.+|||. |||+.+||++|++|+.+|.||+|+|+||+..|+|.|..|.||++
T Consensus 291 anig~~~~~lfEpvHGSAPdi~~~~~aGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l 348 (402)
T 2uxq_A 291 VLVSPYGYFEYEAAHGTVQRHYYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDL 348 (402)
T ss_dssp EEECTTSCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred ceecCCCCeEEeCCCCChhhhhhhhhcCCCcccCcHHHHHHHHHHHHHhCcccccchH
Confidence 34478886 99999999999999999999999999999999999999987765
No 5
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A*
Probab=98.86 E-value=1e-09 Score=86.63 Aligned_cols=51 Identities=47% Similarity=0.742 Sum_probs=46.6
Q ss_pred ecCCCc-------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325 32 RETQGK-------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82 (83)
Q Consensus 32 v~pDG~-------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~ 82 (83)
++|||+ ||++.|||+++++|+.+|.||+|+|++|...|+|+|.+|+||++.
T Consensus 312 ig~~~~~~~fEpvHGSAPdi~~~diAGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l~ 369 (427)
T 2qfy_A 312 VTPDGKTFESEAAHGTVTRHYRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALC 369 (427)
T ss_dssp ECTTSCCEEEECCSCCCHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred eCCCCceeEecCCCCCcccccchhhcCCCCccCcHHHHHHHHHHHHHhCcccCcchhH
Confidence 467873 999999999999999999999999999999999999999888763
No 6
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima}
Probab=98.82 E-value=1.4e-09 Score=85.01 Aligned_cols=52 Identities=40% Similarity=0.595 Sum_probs=46.5
Q ss_pred ceecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCcc
Q psy12325 30 VGRETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81 (83)
Q Consensus 30 Vgv~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L 81 (83)
.-.+|||. ||++.+||++|++|+.++.||+|+|++|...|+|.|..|.||+|
T Consensus 289 anig~~~~~~fEpvHGSAPdi~~~~iaGk~~~ANP~A~IlS~ammL~~lg~~~~~~~l 346 (399)
T 1zor_A 289 VLVSPDGVYEFEAAHGTVRRHYYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEV 346 (399)
T ss_dssp EEECTTCCEEEEESSCCCHHHHHHHTTTCCCCCCCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred eEecCCCCeEEeCCCCcccccchhhhcCCCCccCcHHHHHHHHHHHHhcCcccccchH
Confidence 33478885 99999999999999999999999999999999999998876554
No 7
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1
Probab=98.19 E-value=7.2e-07 Score=68.93 Aligned_cols=45 Identities=13% Similarity=0.073 Sum_probs=40.4
Q ss_pred ecCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccCCCCccc
Q psy12325 32 RETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82 (83)
Q Consensus 32 v~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD~n~~L~ 82 (83)
++|++. ||+..++ +|+ .+.||+|+|++|...|+|.|+||+||++.
T Consensus 245 ig~~~a~fEp~HGSApdi-----aGk-~iANP~A~IlS~ammL~~lg~~d~~~~~~ 294 (336)
T 1wpw_A 245 IGDKKALFEPVHGAAFDI-----AGK-NIGNPTAFLLSVSMMYERMYELSNDDRYI 294 (336)
T ss_dssp ECSSCEEEEESSCCCTTT-----TTS-SCCCTHHHHHHHHHHHHHHHHTTCCTHHH
T ss_pred ECCCCceEeCCCCCchhh-----CCC-CCcCcHHHHHHHHHHHHHcCccccccchH
Confidence 356665 9999998 898 99999999999999999999999999874
No 8
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus}
Probab=96.35 E-value=0.0016 Score=53.19 Aligned_cols=38 Identities=13% Similarity=0.047 Sum_probs=32.8
Q ss_pred ecCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhcc
Q psy12325 32 RETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKL 75 (83)
Q Consensus 32 v~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkL 75 (83)
++||+. ||+..+++ |+ .+.||+|+|+||...|+|.|.-
T Consensus 269 ig~~~a~FEpvHGSAPDIA-----Gk-~iANP~A~IlSaamML~hlG~~ 311 (496)
T 2d1c_A 269 IGNEVAIFEAVHGSAPKYA-----GK-NVINPTAVLLSAVMMLRYLEEF 311 (496)
T ss_dssp ECSSCEEEEESSCCCTTTT-----TS-SCCCCHHHHHHHHHHHHHTTCH
T ss_pred ECCCCceeeCCCCchhhhc-----CC-CccCcHHHHHHHHHHHHHCCCH
Confidence 356766 99999985 87 9999999999999999998753
No 9
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A
Probab=96.35 E-value=0.0027 Score=49.52 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=32.4
Q ss_pred ecCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH-hhc
Q psy12325 32 RETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH-RAK 74 (83)
Q Consensus 32 v~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h-Rgk 74 (83)
.+|||. ||+..++ +|+. +.||+|+|++|.-.|+| .|.
T Consensus 265 ig~~~~~fEpvHGSAPdi-----AGk~-iANP~A~IlS~ammL~~slg~ 307 (359)
T 2y3z_A 265 LGRGTPVFEPVHGSAPDI-----AGKG-IANPTAAILSAAMMLEHAFGL 307 (359)
T ss_dssp EESSCCEEEESSCCCGGG-----TTSS-CSCTHHHHHHHHHHHHHTTCC
T ss_pred eCCCCceeecCCCChhhh-----CCCC-CcCCHHHHHHHHHHHHHhcCC
Confidence 367776 9999998 8987 99999999999999999 764
No 10
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A
Probab=96.23 E-value=0.0036 Score=48.27 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=32.3
Q ss_pred ecCCCc--------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 32 RETQGK--------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 32 v~pDG~--------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
++|||+ ||+..++ +|+. +.||+|+|++|.--|+|.|.
T Consensus 257 ig~~~~~~a~fEp~HGSAPdi-----AGk~-iANP~A~IlS~ammL~~lg~ 301 (337)
T 1w0d_A 257 IDATRANPSMFEPVHGSAPDI-----AGQG-IADPTAAIMSVALLLSHLGE 301 (337)
T ss_dssp ECTTCSSCEEEEESSCCCGGG-----TTSS-CSCCHHHHHHHHHHHHHTTC
T ss_pred eCCCCCCceEEecCCCChhhh-----CCCC-CcCCHHHHHHHHHHHHHCCC
Confidence 367775 9999998 7887 99999999999999999774
No 11
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A*
Probab=96.22 E-value=0.0022 Score=49.79 Aligned_cols=36 Identities=28% Similarity=0.187 Sum_probs=29.6
Q ss_pred cCCCc-----e-eehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 33 ETQGK-----M-IYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 33 ~pDG~-----h-GTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
+||+. | |+..++ +|+. +.||+|+|++|...|+|.|.
T Consensus 263 g~~~a~fEpvH~GSAPdi-----AGk~-iANP~A~IlS~ammL~~lg~ 304 (349)
T 3blx_A 263 GRDYAVFEPGSRHVGLDI-----KGQN-VANPTAMILSSTLMLNHLGL 304 (349)
T ss_dssp ESSCEEECCTTTTSCC-------CCTT-CSCCHHHHHHHHHHHHHHTC
T ss_pred CCCceeEcCCCCCchhhh-----cCCC-CCCcHHHHHHHHHHHHhcCc
Confidence 56665 8 999998 8987 99999999999999999774
No 12
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B
Probab=96.10 E-value=0.0043 Score=48.29 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=31.3
Q ss_pred cCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 33 ETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 33 ~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
+||+. ||+..++ +|+. +.||+|+|++|.-.|+|.|.
T Consensus 271 g~~~a~fEp~HGSAPdi-----AGk~-iANP~A~IlS~ammL~~lg~ 311 (354)
T 3blx_B 271 GHKISIFEAVHGSAPDI-----AGQD-KANPTALLLSSVMMLNHMGL 311 (354)
T ss_dssp ESSCEEEEECSCCCGGG-----TTTT-CCCTHHHHHHHHHHHHHHTC
T ss_pred CCCceEEecCCCChhhh-----cCCC-ccCcHHHHHHHHHHHHHcCC
Confidence 55655 9999988 8987 99999999999999999764
No 13
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A
Probab=95.99 E-value=0.0048 Score=47.60 Aligned_cols=36 Identities=17% Similarity=0.056 Sum_probs=31.4
Q ss_pred cCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 33 ETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 33 ~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
+|++. ||+..++ +|+. +.||+|+|++|.-.|+|.|.
T Consensus 249 g~~~a~fEp~HGSAPdi-----aGk~-iANP~A~IlS~ammL~~lg~ 289 (333)
T 1x0l_A 249 GDTTAVFEPVHGSAPDI-----AGKG-IANPTAAILSAAMMLDYLGE 289 (333)
T ss_dssp CSSCEEEEESSCCCGGG-----TTSS-CCCCHHHHHHHHHHHHHHTC
T ss_pred CCCceEEeCCCCChhhh-----cCCC-CcCcHHHHHHHHHHHHhcCc
Confidence 56665 9999986 8988 99999999999999999874
No 14
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1
Probab=95.87 E-value=0.0047 Score=47.89 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=27.0
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHh
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHR 72 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hR 72 (83)
||+..++ +|+ .+.||+|+|++|...|+|+
T Consensus 278 HGSAPdi-----AGk-~iANP~A~IlS~ammL~~~ 306 (358)
T 1a05_A 278 HGSAPDI-----AGQ-DKANPLATILSVAMMLRHS 306 (358)
T ss_dssp SCCCGGG-----TTT-TCSCCHHHHHHHHHHHHHT
T ss_pred CCChhHh-----cCC-CccCcHHHHHHHHHHHHHH
Confidence 9999998 588 9999999999999999994
No 15
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X*
Probab=95.69 E-value=0.0069 Score=47.19 Aligned_cols=33 Identities=21% Similarity=0.146 Sum_probs=30.3
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhccC
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLD 76 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgkLD 76 (83)
||+..+. +|+. ..||+|+|++|.--|+|.|++|
T Consensus 284 HGSAPdi-----AGk~-iANP~A~IlS~ammL~~lg~~~ 316 (364)
T 3flk_A 284 HGSAPDI-----FGKN-IANPIAMIWSGALMLEFLGQGD 316 (364)
T ss_dssp SCCCTTT-----TTSS-CCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCCchhh-----cCCC-ccCcHHHHHHHHHHHHHhCccc
Confidence 9999984 7887 7999999999999999999887
No 16
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1
Probab=95.49 E-value=0.0084 Score=47.54 Aligned_cols=31 Identities=19% Similarity=0.097 Sum_probs=28.7
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
|||..++ +|+. +.||+|+|++|.-.|+|.|.
T Consensus 345 HGSAPdi-----AGk~-iANP~A~IlS~amML~hlg~ 375 (423)
T 1hqs_A 345 HGTAPKY-----AGLD-KVNPSSVILSGVLLLEHLGW 375 (423)
T ss_dssp CCCCGGG-----TTTT-CSCCHHHHHHHHHHHHHHTC
T ss_pred CCChhhh-----CCCC-CcCcHHHHHHHHHHHHHcCC
Confidence 9999998 7986 99999999999999999874
No 17
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A*
Probab=95.28 E-value=0.0094 Score=47.00 Aligned_cols=31 Identities=19% Similarity=0.038 Sum_probs=28.4
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
|||..+++ |+ .+.||+|+|++|.--|+|.|.
T Consensus 330 HGSAPdiA-----Gk-~iANP~A~IlS~ammL~~lg~ 360 (409)
T 2e0c_A 330 HGTAPKYA-----GK-NVANPTGIIKAGELMLRWMGW 360 (409)
T ss_dssp SCCCGGGT-----TT-TCSCTHHHHHHHHHHHHHHTC
T ss_pred CCChhhhc-----CC-cccCcHHHHHHHHHHHHhCCC
Confidence 99999985 75 999999999999999999875
No 18
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A*
Probab=95.20 E-value=0.011 Score=47.22 Aligned_cols=36 Identities=14% Similarity=0.004 Sum_probs=30.7
Q ss_pred cCCCc-----eeehhHHHHHHhhCCCccCChhHHHHHHHHHH-HHhhc
Q psy12325 33 ETQGK-----MIYFLTFFREHQKGNKTSTNPVASIYAWTQGL-QHRAK 74 (83)
Q Consensus 33 ~pDG~-----hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL-~hRgk 74 (83)
+|++. |||..++ +|+ .+.||+|+|++|.--| +|.|.
T Consensus 333 g~~~a~fEpvHGSAPdi-----AGk-~iANP~A~IlS~amML~~hlg~ 374 (435)
T 1tyo_A 333 GDGIAVAEPVHGTAPKY-----AGK-DLINPSAEILSASLLIGEFMGW 374 (435)
T ss_dssp CSSCEEEEESSCCCGGG-----TTS-SCSCCHHHHHHHHHHHHTTSCC
T ss_pred CCCceeeecCCCChHHh-----cCC-CCcCcHHHHHHHHHHHHHHcCC
Confidence 45554 9999998 788 6999999999999999 98763
No 19
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A
Probab=95.18 E-value=0.013 Score=45.48 Aligned_cols=35 Identities=23% Similarity=0.142 Sum_probs=30.6
Q ss_pred ecCCCc------eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHh
Q psy12325 32 RETQGK------MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHR 72 (83)
Q Consensus 32 v~pDG~------hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hR 72 (83)
.+|||. ||+..++. |+ .+.||+|+|++|.--|+|+
T Consensus 272 ig~~~~a~fEpvHGSAPdiA-----Gk-~iANP~A~IlS~ammL~~~ 312 (363)
T 1cnz_A 272 LNEQGFGLYEPAGGSAPDIA-----GK-NIANPIAQILSLALLLRYS 312 (363)
T ss_dssp ECTTSCEEEEESSCCCGGGT-----TT-TCSCCHHHHHHHHHHHHHH
T ss_pred eCCCCCeEEEcCCCChhhhc-----CC-CccCcHHHHHHHHHHHHHH
Confidence 367774 99999984 87 9999999999999999994
No 20
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans}
Probab=94.81 E-value=0.0085 Score=47.67 Aligned_cols=31 Identities=19% Similarity=0.069 Sum_probs=27.7
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
|||..+++ |+ .+.||+|+|++|.--|+|.|.
T Consensus 352 HGSAPdiA-----Gk-~iANP~A~IlS~amML~hlg~ 382 (429)
T 2d4v_A 352 HGTAPDIA-----GQ-GKANPSSLILSAVMMLEHLGW 382 (429)
T ss_dssp CCCCTTTT-----TT-TCCCCHHHHHHHHHHHHHTTC
T ss_pred CCChhHhc-----CC-CCcCcHHHHHHHHHHHHHcCC
Confidence 99999985 43 899999999999999999875
No 21
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus}
Probab=94.32 E-value=0.018 Score=45.54 Aligned_cols=31 Identities=16% Similarity=0.053 Sum_probs=28.2
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
|||..+++ |+ .+.||+|+|++|.--|+|.|.
T Consensus 333 HGSAPdiA-----Gk-~iANP~A~IlS~amML~~lg~ 363 (412)
T 2iv0_A 333 HGSAPKYA-----GQ-NKVNPTAEILTGALMFEYIGW 363 (412)
T ss_dssp SCCCSTTT-----TS-SCSCCHHHHHHHHHHHHHTTC
T ss_pred CCChhhcC-----CC-cccCcHHHHHHHHHHHHhCCC
Confidence 99999985 75 999999999999999999875
No 22
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ...
Probab=92.23 E-value=0.086 Score=41.84 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=27.7
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhhc
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRAK 74 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRgk 74 (83)
||+..+. +|+ ...||+|+|++|.--|+|.|.
T Consensus 349 HGSAPdI-----AGk-~iANP~A~IlS~amML~~lg~ 379 (427)
T 3dms_A 349 HGTAPKY-----AGK-DYVNPGSEILSAEMMLRHLGW 379 (427)
T ss_dssp SCCCGGG-----TTS-SCSCCHHHHHHHHHHHHHTTC
T ss_pred cCChhhh-----cCC-CcCCcHHHHHHHHHHHHhcCC
Confidence 9999984 788 899999999999999999663
No 23
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1
Probab=91.22 E-value=0.11 Score=40.65 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=26.7
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHh
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHR 72 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hR 72 (83)
||+..++ +|+ ...||+|+|++|.--|+|+
T Consensus 286 HGSAPdI-----AGk-~iANP~A~IlS~ammL~~s 314 (366)
T 1vlc_A 286 GGSAPDI-----AGK-NIANPIAQILSLAMMLEHS 314 (366)
T ss_dssp SCCCTTT-----TTT-TCSCCHHHHHHHHHHHHHH
T ss_pred CCchhhc-----CCC-CccCcHHHHHHHHHHHHHH
Confidence 8999887 888 9999999999999999994
No 24
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana}
Probab=87.96 E-value=0.47 Score=37.67 Aligned_cols=30 Identities=20% Similarity=0.105 Sum_probs=26.7
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH-hh
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH-RA 73 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h-Rg 73 (83)
||+..+ .+|+- ..||+|+|++|.--|+| .|
T Consensus 321 HGSAPD-----IAGk~-iANP~A~IlS~amML~~slg 351 (405)
T 3r8w_A 321 HGSAPD-----IAGQD-KANPLATILSAAMLLKYGLG 351 (405)
T ss_dssp SCCCGG-----GTTTT-CCCCHHHHHHHHHHHHHTTC
T ss_pred CCChhh-----hCCCC-CCCcHHHHHHHHHHHHhhCc
Confidence 999988 47886 99999999999999999 55
No 25
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A
Probab=87.94 E-value=0.29 Score=38.26 Aligned_cols=30 Identities=20% Similarity=0.104 Sum_probs=26.3
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHHhh
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQHRA 73 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~hRg 73 (83)
||+..+. +||- ..||+|+|++|.--|+|-|
T Consensus 292 HGSAPdI-----aGk~-iANP~A~IlS~amML~~lg 321 (366)
T 3ty4_A 292 HGSAPDI-----AGRG-IANPVATFRSVALMLEFMG 321 (366)
T ss_dssp SCCCTTT-----TTSS-CCCCHHHHHHHHHHHHHTT
T ss_pred CCChhhc-----CCCC-ccCcHHHHHHHHHHHHHCC
Confidence 8898884 6876 9999999999999999965
No 26
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A*
Probab=86.53 E-value=0.49 Score=37.06 Aligned_cols=30 Identities=27% Similarity=0.152 Sum_probs=26.4
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH-hh
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH-RA 73 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h-Rg 73 (83)
||+.-+. +|| ...||+|+|++|.--|+| .|
T Consensus 293 HGSAPdI-----AGk-~iANP~A~IlS~amML~~~lg 323 (375)
T 3vmk_A 293 GGSAPDI-----AGQ-GIANPVAQILSAALLLRHSLK 323 (375)
T ss_dssp SCCCTTT-----TTS-SCSCCHHHHHHHHHHHHHTTC
T ss_pred CCCchhc-----cCC-CccCcHHHHHHHHHHHHHHCC
Confidence 8998885 687 789999999999999999 55
No 27
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A
Probab=74.23 E-value=2.6 Score=33.36 Aligned_cols=28 Identities=21% Similarity=0.103 Sum_probs=25.2
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH 71 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h 71 (83)
||+.-+ .+|+- ..||+|+|.+|.--|+|
T Consensus 300 HGSAPD-----IAGk~-iANP~A~IlS~amML~~ 327 (390)
T 3u1h_A 300 HGSAPD-----IAGKG-IANPLATILSAAMMLRY 327 (390)
T ss_dssp SCCCTT-----TTTSS-CSCTHHHHHHHHHHHHH
T ss_pred CCChhh-----hcCCC-cCCcHHHHHHHHHHHHH
Confidence 888887 68887 79999999999999998
No 28
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A
Probab=74.22 E-value=2.9 Score=32.60 Aligned_cols=28 Identities=18% Similarity=-0.017 Sum_probs=24.9
Q ss_pred eeehhHHHHHHhhCCCccCChhHHHHHHHHHHHH
Q psy12325 38 MIYFLTFFREHQKGNKTSTNPVASIYAWTQGLQH 71 (83)
Q Consensus 38 hGTVTRHyr~hqkG~eTSTNPIAsIFAWTrgL~h 71 (83)
||+.-+. +|+ ...||+|+|.+|.--|+|
T Consensus 281 HGSAPdI-----AGk-~iANP~A~IlS~amML~~ 308 (361)
T 3udu_A 281 GGSAPDI-----AHL-NIANPIAQILSAALMLKY 308 (361)
T ss_dssp SCCCGGG-----TTS-SCCCCHHHHHHHHHHHHH
T ss_pred CCChhhh-----cCC-CccCCHHHHHHHHHHHHH
Confidence 8998884 677 689999999999999998
No 29
>3ol3_A Putative uncharacterized protein; tuberculosis, RV0543C, ortholog, iodide ION S phasing, structural genomics; HET: PG4 PGE; 1.95A {Mycobacterium smegmatis} PDB: 3ol4_A
Probab=60.81 E-value=2.8 Score=28.24 Aligned_cols=17 Identities=18% Similarity=0.466 Sum_probs=13.1
Q ss_pred CCccCChhHHHHHHHHH
Q psy12325 52 NKTSTNPVASIYAWTQG 68 (83)
Q Consensus 52 ~eTSTNPIAsIFAWTrg 68 (83)
-||++|.++||.+|.|+
T Consensus 6 ~~~~p~~l~siv~WLRa 22 (107)
T 3ol3_A 6 TETTTTFMDNVLGWLHK 22 (107)
T ss_dssp ---CHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHc
Confidence 47899999999999986
No 30
>2f5j_A Mortality factor 4-like protein 1; MRG fold, mainly A-helix, gene regulation; 2.20A {Homo sapiens} PDB: 2aql_A 2lkm_B
Probab=52.46 E-value=3.6 Score=28.75 Aligned_cols=15 Identities=33% Similarity=0.560 Sum_probs=12.0
Q ss_pred HHHHhHHHHHhhhhc
Q psy12325 12 MMRYGIEHFLRFRKK 26 (83)
Q Consensus 12 ~~~~~~~~~~~~~~~ 26 (83)
..-||++|+||+--|
T Consensus 105 S~iYGa~HLLRLfvk 119 (181)
T 2f5j_A 105 SQVYGAPHLLRLFVR 119 (181)
T ss_dssp HHHCBHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHH
Confidence 357999999997654
No 31
>2y0n_A MALE-specific lethal 3 homolog; transcription, chromatin, X chromosome, MSL complex; 3.00A {Homo sapiens}
Probab=51.60 E-value=3.7 Score=29.04 Aligned_cols=14 Identities=43% Similarity=0.707 Sum_probs=11.3
Q ss_pred HHHhHHHHHhhhhc
Q psy12325 13 MRYGIEHFLRFRKK 26 (83)
Q Consensus 13 ~~~~~~~~~~~~~~ 26 (83)
.-||++|+||+--|
T Consensus 142 ~iYGa~HLLRLfvk 155 (211)
T 2y0n_A 142 YIYGAQHLLRLFVK 155 (211)
T ss_dssp GTCCHHHHHHHHHH
T ss_pred HHcCHHHHHHHHHH
Confidence 56999999997544
No 32
>2ygu_A Venom allergen 2; hydrophobic cavity, insect odorant binding protein; 2.60A {Solenopsis invicta}
Probab=34.93 E-value=25 Score=24.63 Aligned_cols=29 Identities=24% Similarity=0.507 Sum_probs=25.2
Q ss_pred hhCCCccCChhHHHHHHHHHHHHhhccCC
Q psy12325 49 QKGNKTSTNPVASIYAWTQGLQHRAKLDN 77 (83)
Q Consensus 49 qkG~eTSTNPIAsIFAWTrgL~hRgkLD~ 77 (83)
-+++----||+|-+=.|-=||.+||-.|+
T Consensus 20 PK~~N~P~dPL~~VdVw~Ca~~KrGvfD~ 48 (125)
T 2ygu_A 20 PKCGNQPDDPLARVDVWHCAMAKRGVYDN 48 (125)
T ss_dssp CCCSSCCSCGGGCHHHHHHHHHHTTTTSS
T ss_pred ccccCCCCchhhhcchhheehhcccccCC
Confidence 45666678999999999999999999984
No 33
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=28.14 E-value=92 Score=18.06 Aligned_cols=64 Identities=14% Similarity=0.288 Sum_probs=34.2
Q ss_pred HHhHHHHHhhhhcCCcceecC-CCceeehhHHHHHHhhCCCccCChhHHHHH----HHHHHHHhhccCCCCc
Q psy12325 14 RYGIEHFLRFRKKNSNVGRET-QGKMIYFLTFFREHQKGNKTSTNPVASIYA----WTQGLQHRAKLDNTPD 80 (83)
Q Consensus 14 ~~~~~~~~~~~~~~~~Vgv~p-DG~hGTVTRHyr~hqkG~eTSTNPIAsIFA----WTrgL~hRgkLD~n~~ 80 (83)
+..+..|++|-.++... .+ +=+.-.| +-|..+++.+.-|.+.++...+ +-+=|..+|-++.||.
T Consensus 33 ~~~l~~f~~~l~~~~~~--~l~~it~~~i-~~y~~~l~~~~~s~~Ti~~~ls~lr~f~~~l~~~g~i~~nP~ 101 (117)
T 3nrw_A 33 RYRLKHFVEWAEERDIT--AMRELTGWKL-DEYETFRRGSDVSPATLNGEMQTLKNWLEYLARIDVVDEDLP 101 (117)
T ss_dssp HHHHHHHHHHHHHTTCC--SGGGCCHHHH-HHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHTTSSCTTSG
T ss_pred HHHHHHHHHHHHHcCCC--ChHHCCHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCcccCHH
Confidence 45678888886543210 00 0011123 4477777655556665554443 3344556788888874
No 34
>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A
Probab=23.06 E-value=12 Score=24.50 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=13.8
Q ss_pred HHhhhhcCCcceecCCCc
Q psy12325 20 FLRFRKKNSNVGRETQGK 37 (83)
Q Consensus 20 ~~~~~~~~~~Vgv~pDG~ 37 (83)
|||.|-|.--|-++||.+
T Consensus 78 fLRiRTkkhEimIapd~~ 95 (106)
T 2hz5_A 78 FLRIRSKKNEIMVAPDKD 95 (106)
T ss_dssp EEEEEESSCEEEEEC---
T ss_pred EEEEEeCCcEEEEEecCC
Confidence 789999999999999988
Done!