RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12325
         (83 letters)



>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated.
          Length = 402

 Score = 84.9 bits (211), Expect = 3e-21
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R+HQKG +TSTNP+ASI+AWT+GL HR KLD  P+L +
Sbjct: 314 YRQHQKGEETSTNPIASIFAWTRGLAHRGKLDGNPELVK 352


>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional.
          Length = 413

 Score = 83.9 bits (208), Expect = 7e-21
 Identities = 25/39 (64%), Positives = 33/39 (84%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R+HQKG +TSTN +ASI+AWT+GL HRAKLDN  +L +
Sbjct: 317 YRQHQKGKETSTNSIASIFAWTRGLAHRAKLDNNQELVK 355


>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent,
           eukaryotic type.  This model describes a eukaryotic,
           NADP-dependent form of isocitrate dehydrogenase. These
           eukaryotic enzymes differ considerably from a fairly
           tight cluster that includes all other related isocitrate
           dehydrogenases, 3-isopropylmalate dehydrogenases, and
           tartrate dehydrogenases. Several NAD- or NADP-dependent
           dehydrogenases, including 3-isopropylmalate
           dehydrogenase, tartrate dehydrogenase, and the
           multimeric forms of isocitrate dehydrogenase, share a
           nucleotide binding domain unrelated to that of lactate
           dehydrogenase and its homologs. These enzymes
           dehydrogenate their substates at a H-C-OH site adjacent
           to a H-C-COOH site; the latter carbon, now adjacent to a
           carbonyl group, readily decarboxylates. This model does
           not discriminate cytosolic, mitochondrial, and
           chloroplast proteins. However, the model starts very
           near the amino end of the cytosolic form; the finding of
           additional amino-terminal sequence may indicate a
           transit peptide [Energy metabolism, TCA cycle].
          Length = 409

 Score = 70.7 bits (173), Expect = 4e-16
 Identities = 24/37 (64%), Positives = 32/37 (86%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +R +QKG +TSTN +ASI+AW++GL HRAKLDN P+L
Sbjct: 315 YRMYQKGQETSTNSIASIFAWSRGLAHRAKLDNNPEL 351


>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional.
          Length = 483

 Score = 70.3 bits (172), Expect = 6e-16
 Identities = 25/37 (67%), Positives = 31/37 (83%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           FR HQKG +TSTN +ASI+AWT+GL+HRAKLD   +L
Sbjct: 385 FRLHQKGQETSTNSIASIFAWTRGLEHRAKLDKNEEL 421


>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional.
          Length = 410

 Score = 63.3 bits (154), Expect = 2e-13
 Identities = 23/37 (62%), Positives = 29/37 (78%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
           +R HQKG +TSTN +ASI+AW++GL HRAKLD    L
Sbjct: 318 YRVHQKGGETSTNSIASIFAWSRGLAHRAKLDGNARL 354


>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and
           conversion].
          Length = 407

 Score = 44.2 bits (105), Expect = 8e-07
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 53  KTSTNPVASIYAWTQGLQHRAKLDNTP 79
           K STNP+ASI + T  L+HR  L+   
Sbjct: 337 KDSTNPIASILSGTMMLRHRGWLEAAD 363


>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase. 
          Length = 349

 Score = 29.6 bits (67), Expect = 0.11
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 56  TNPVASIYAWTQGLQHRAKLDNTPDL 81
            NP+A+I +    L+H   L++  D 
Sbjct: 290 ANPIATILSAAMMLRHSLGLEDEADK 315


>gnl|CDD|214338 CHL00025, ndhF, NADH dehydrogenase subunit 5.
          Length = 741

 Score = 28.3 bits (64), Expect = 0.40
 Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 28/64 (43%)

Query: 6   GITGFFMMRYGIEHFLRFRKKNSNVGRETQGKMIYFLTF---FREH-QKGNKTSTNPVAS 61
           G+T F+M R                        IY LTF    R H Q  +    +   S
Sbjct: 440 GLTAFYMFR------------------------IYLLTFEGHLRVHFQNYSGKKNSSFYS 475

Query: 62  IYAW 65
           I  W
Sbjct: 476 ISLW 479


>gnl|CDD|223057 PHA03364, PHA03364, hypothetical protein; Provisional.
          Length = 264

 Score = 25.3 bits (56), Expect = 4.2
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 2   GLLQGITGFFMMRYGIEHFLRF 23
            LL G+  F     G+ H ++ 
Sbjct: 118 ALLGGLCRFVFRELGLTHAVKI 139


>gnl|CDD|234748 PRK00402, PRK00402, 3-isopropylmalate dehydratase large subunit;
           Reviewed.
          Length = 418

 Score = 24.8 bits (55), Expect = 5.9
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 5   QGITGFFMMRYGIEH 19
           QGI  FF +  GI H
Sbjct: 88  QGIPNFFDVGEGICH 102


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0774    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,226,910
Number of extensions: 315900
Number of successful extensions: 350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 349
Number of HSP's successfully gapped: 15
Length of query: 83
Length of database: 10,937,602
Length adjustment: 52
Effective length of query: 31
Effective length of database: 8,631,194
Effective search space: 267567014
Effective search space used: 267567014
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)