RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy12325
         (83 letters)



>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature
           adaptation, thermophilic, psychr NADP+ selectivity,
           domain movements; 2.35A {Clostridium thermocellum} PDB:
           4aou_A
          Length = 402

 Score = 65.2 bits (158), Expect = 2e-14
 Identities = 17/39 (43%), Positives = 26/39 (66%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           + +H KG +TSTN +A+I+AWT  L+ R +LD   +L  
Sbjct: 313 YYKHLKGEETSTNSMATIFAWTGALKKRGELDGIKELVD 351


>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase,
           NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB:
           1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A*
           2cmj_A* 2cmv_A*
          Length = 413

 Score = 64.0 bits (155), Expect = 6e-14
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL 
Sbjct: 316 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLI 353


>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
           HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
           2qfx_A* 2qfv_A*
          Length = 427

 Score = 63.3 bits (153), Expect = 1e-13
 Identities = 22/39 (56%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +R++QKG +TSTN +ASI+AW++GL  R +LDNTP L +
Sbjct: 332 YRKYQKGEETSTNSIASIFAWSRGLLKRGELDNTPALCK 370


>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline,
           thermostable, oxidoreductase; 2.24A {Thermotoga
           maritima}
          Length = 399

 Score = 61.7 bits (149), Expect = 4e-13
 Identities = 19/39 (48%), Positives = 27/39 (69%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +  + KG KTSTNP ASI+AWT  ++ R +LD TP++  
Sbjct: 310 YYRYLKGEKTSTNPTASIFAWTGAIRKRGELDGTPEVCE 348


>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation,
           thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A
           {Desulfotalea psychrophila} PDB: 2uxr_A*
          Length = 402

 Score = 60.9 bits (147), Expect = 7e-13
 Identities = 23/39 (58%), Positives = 28/39 (71%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           + +H KG +TSTNPVA IYAWT  L+ R +LD TPDL  
Sbjct: 312 YYQHLKGERTSTNPVALIYAWTGALRKRGELDGTPDLCA 350


>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics;
           2.25A {Sinorhizobium meliloti}
          Length = 427

 Score = 59.4 bits (143), Expect = 2e-12
 Identities = 25/38 (65%), Positives = 32/38 (84%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLA 82
           +R+HQKG +TSTN +ASI+AWT+GL HRAKLD   +LA
Sbjct: 337 YRQHQKGEETSTNSIASIFAWTRGLAHRAKLDGNAELA 374


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 31.1 bits (69), Expect = 0.019
 Identities = 8/17 (47%), Positives = 9/17 (52%), Gaps = 3/17 (17%)

Query: 69 LQHRAKL---DNTPDLA 82
          LQ   KL   D+ P LA
Sbjct: 25 LQASLKLYADDSAPALA 41


>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
          merolae}
          Length = 632

 Score = 24.3 bits (53), Expect = 6.9
 Identities = 7/41 (17%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 2  GLLQGITGFFMMRYGIEHFLRFRKKNSNVGRETQGKMIYFL 42
          G+   +  F +    +      R K S +     G ++Y +
Sbjct: 18 GVTAALFIFAV-DLAVHGLEELRMKISRLAGRFAGYILYVV 57


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.325    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0507    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,231,877
Number of extensions: 54041
Number of successful extensions: 119
Number of sequences better than 10.0: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 11
Length of query: 83
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 32
Effective length of database: 5,277,822
Effective search space: 168890304
Effective search space used: 168890304
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)