RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12325
         (83 letters)



>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig
           (Sus scrofa) [TaxId: 9823]}
          Length = 413

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 27/39 (69%), Positives = 32/39 (82%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
           +REHQKG  TSTNP+ASI+AWT+GL+HR KLD   DL R
Sbjct: 316 YREHQKGRPTSTNPIASIFAWTRGLEHRGKLDGNQDLIR 354


>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 414

 Score = 41.0 bits (95), Expect = 3e-06
 Identities = 26/41 (63%), Positives = 33/41 (80%)

Query: 43  TFFREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
             +R +QKG +TSTNP+ASI+AWT+GL HRAKLDN  +LA 
Sbjct: 314 RHYRMYQKGQETSTNPIASIFAWTRGLAHRAKLDNNKELAF 354


>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
           {Azotobacter vinelandii [TaxId: 354]}
          Length = 740

 Score = 35.1 bits (81), Expect = 3e-04
 Identities = 4/37 (10%), Positives = 10/37 (27%)

Query: 45  FREHQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
            ++  +      + +    A    L+H       P  
Sbjct: 589 VQQFLEEGYLRWDSLGEFLALAASLEHLGNAYKNPKA 625


>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Salmonella typhimurium [TaxId: 90371]}
          Length = 363

 Score = 28.5 bits (63), Expect = 0.076
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 48  HQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
                K   NP+A I +    L++    ++    
Sbjct: 288 PDIAGKNIANPIAQILSLALLLRYSLDANDAATA 321


>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia
           coli [TaxId: 562]}
          Length = 416

 Score = 28.2 bits (62), Expect = 0.088
 Identities = 5/21 (23%), Positives = 9/21 (42%)

Query: 52  NKTSTNPVASIYAWTQGLQHR 72
            +   NP + I +    L+H 
Sbjct: 347 GQDKVNPGSIILSAEMMLRHM 367


>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Sulfolobus tokodaii [TaxId: 111955]}
          Length = 336

 Score = 27.9 bits (61), Expect = 0.11
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 48  HQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDLAR 83
                K   NP A + + +   +   +L N     +
Sbjct: 260 FDIAGKNIGNPTAFLLSVSMMYERMYELSNDDRYIK 295


>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus
           subtilis [TaxId: 1423]}
          Length = 423

 Score = 26.6 bits (58), Expect = 0.32
 Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 17/49 (34%)

Query: 52  NKTSTNPVASIYAWTQGLQHR------AKLDN-----------TPDLAR 83
                NP + I +    L+H         +             T D AR
Sbjct: 353 GLDKVNPSSVILSGVLLLEHLGWNEAADLVIKSMEKTIASKVVTYDFAR 401


>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Thiobacillus ferrooxidans [TaxId: 920]}
          Length = 357

 Score = 26.2 bits (57), Expect = 0.40
 Identities = 6/34 (17%), Positives = 12/34 (35%)

Query: 48  HQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
                +   NP+A+I +    L+H    +     
Sbjct: 282 PDIAGQDKANPLATILSVAMMLRHSLNAEPWAQR 315


>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH
           {Bacillus coagulans [TaxId: 1398]}
          Length = 356

 Score = 24.3 bits (52), Expect = 2.3
 Identities = 4/30 (13%), Positives = 12/30 (40%)

Query: 52  NKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
            +   NP+ ++ +    L++   L+     
Sbjct: 287 GQGKANPLGTVLSAALMLRYSFGLEKEAAA 316


>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
           reductase subunit alpha, DsrA {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 185

 Score = 23.9 bits (51), Expect = 3.1
 Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 6/33 (18%)

Query: 8   TGFFMMRYGIEHFLRFRKKNSNVGRETQGKMIY 40
            G  + R G+  FL+       +GRE   +M+ 
Sbjct: 129 IGELIWRKGMREFLKV------IGREADVRMVK 155


>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH
           {Thermotoga maritima [TaxId: 2336]}
          Length = 362

 Score = 22.7 bits (48), Expect = 8.5
 Identities = 7/34 (20%), Positives = 11/34 (32%)

Query: 48  HQKGNKTSTNPVASIYAWTQGLQHRAKLDNTPDL 81
                K   NP+A I +    L+H   +      
Sbjct: 286 PDIAGKNIANPIAQILSLAMMLEHSFGMVEEARK 319


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.138    0.422 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 298,803
Number of extensions: 10610
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 11
Length of query: 83
Length of database: 2,407,596
Length adjustment: 49
Effective length of query: 34
Effective length of database: 1,734,826
Effective search space: 58984084
Effective search space used: 58984084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.3 bits)