BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12338
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q10172|PAN1_SCHPO Actin cytoskeleton-regulatory complex protein pan1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pan1 PE=1 SV=1
Length = 1794
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 52/126 (41%), Gaps = 26/126 (20%)
Query: 1 MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTE----PHRNGTKPHWNGMQ----PHWN 48
M P G++P G Q P GM+P G + P R G +P G Q P
Sbjct: 458 MMPQRTGLQPQMTGFQQPMVPQRTGMQPQMTGFQQPMMPQRTGLQPQMTGFQQPMVPQRT 517
Query: 49 GMEPHWNG----MEPHWNGMEP---HWNGMQPHWNGMQ----PHWNGME---PHWNGMKP 94
GM+P G M P GM+P GMQP G Q P GM+ P GM+P
Sbjct: 518 GMQPMMPGLQQPMAPQRTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQRTGMQP 577
Query: 95 HWNGIE 100
G++
Sbjct: 578 QMPGMQ 583
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/124 (33%), Positives = 53/124 (42%), Gaps = 27/124 (21%)
Query: 1 MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTE----PHRNGTKPHWNGMQ----PHWN 48
M P GM+P G Q P G++P G + P R G +P G+Q P
Sbjct: 476 MVPQRTGMQPQMTGFQQPMMPQRTGLQPQMTGFQQPMVPQRTGMQPMMPGLQQPMAPQRT 535
Query: 49 GMEPHWNGMEPHWNGMEPHWNGMQ----PHWNGMQ---PHWNGMEPHWNGMK----PHWN 97
GM+P M P GM+P G Q P GMQ P GM+P GM+ P
Sbjct: 536 GMQP----MMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRT 591
Query: 98 GIEP 101
G++P
Sbjct: 592 GMQP 595
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 51/119 (42%), Gaps = 27/119 (22%)
Query: 1 MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTEPHRNGTKP---HWNGMQPHWNGME-- 51
M P GM+P GMQ P GM+P P R G +P GMQP GM+
Sbjct: 645 MMPQRTGMQPQMPGMQQPMAPQRTGMQPMA----PQRTGMQPMMPQRTGMQPQMPGMQQP 700
Query: 52 --PHWNGMEPHWNGMEPHWNGMQPHWNGMQ----PHWNGMEPHWNGMKPHWNGIEPHWN 104
P GM+P M P GMQP GMQ P GM+P M P G++P
Sbjct: 701 MAPQRTGMQP----MMPQRTGMQPQMPGMQQPMAPQRTGMQP----MAPQRTGMQPQMT 751
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 55/131 (41%), Gaps = 31/131 (23%)
Query: 1 MEPHWNGMEP---HWNGMQPHWNG----MEPHWNGTEP---HRNGTKPHWNGMQ----PH 46
M P GM+P GMQP G M P G +P R G +P GMQ P
Sbjct: 530 MAPQRTGMQPMMPQRTGMQPQMTGFQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQ 589
Query: 47 WNGMEP---HWNGME----PHWNGMEP---HWNGMQPHWNGMQ----PHWNGME---PHW 89
GM+P GM+ P GM+P GMQP GMQ P GM+ P
Sbjct: 590 RTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQR 649
Query: 90 NGMKPHWNGIE 100
GM+P G++
Sbjct: 650 TGMQPQMPGMQ 660
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/123 (35%), Positives = 53/123 (43%), Gaps = 30/123 (24%)
Query: 1 MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTEPHRNGTK----PHWNGMQP---HWNG 49
M P GM+P GMQ P GM+P P R G + P GMQP G
Sbjct: 568 MMPQRTGMQPQMPGMQQPMAPQRTGMQPMM----PQRTGMQQPMAPQRTGMQPMMPQRTG 623
Query: 50 MEPHWNGME----PHWNGMEP---HWNGMQPHWNGMQ----PHWNGMEPHWNGMKPHWNG 98
M+P GM+ P GM+P GMQP GMQ P GM+P M P G
Sbjct: 624 MQPQMPGMQQPMAPQRTGMQPMMPQRTGMQPQMPGMQQPMAPQRTGMQP----MAPQRTG 679
Query: 99 IEP 101
++P
Sbjct: 680 MQP 682
Score = 53.5 bits (127), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 53/125 (42%), Gaps = 29/125 (23%)
Query: 1 MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTEPHRNGTKPHWNGMQ----PHWNGMEP 52
M P GM+P G+Q P GM+P P R G +P G Q P GM+P
Sbjct: 512 MVPQRTGMQPMMPGLQQPMAPQRTGMQPMM----PQRTGMQPQMTGFQQPMAPQRTGMQP 567
Query: 53 ---HWNGMEPHWNGME----PHWNGMQ---PHWNGMQ----PHWNGME---PHWNGMKPH 95
GM+P GM+ P GMQ P GMQ P GM+ P GM+P
Sbjct: 568 MMPQRTGMQPQMPGMQQPMAPQRTGMQPMMPQRTGMQQPMAPQRTGMQPMMPQRTGMQPQ 627
Query: 96 WNGIE 100
G++
Sbjct: 628 MPGMQ 632
>sp|Q9SEH4|PMT4_TOBAC Putrescine N-methyltransferase 4 OS=Nicotiana tabacum GN=PMT4 PE=3
SV=1
Length = 419
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 49/108 (45%), Gaps = 22/108 (20%)
Query: 1 MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNG 56
M H +G H NG Q H NG H NGT HRNG H NG+ H NG H NG
Sbjct: 21 MNGHQSGTSKHLNGYQNGTSKHQNG---HHNGTSEHRNG---HQNGISEHQNG---HQNG 71
Query: 57 MEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
H NG H NG+ H NG H NG H NG H NG N
Sbjct: 72 TSEHRNG---HQNGISEHQNG---HQNGTSEHQNG---HQNGTSEQQN 110
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 4 HWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGME 51
H NG+ H NG H NG H NG H+NGT NG H NG E
Sbjct: 79 HQNGISEHQNG---HQNGTSEHQNG---HQNGTSEQQNGTISHDNGNE 120
>sp|O13736|SLA1_SCHPO Actin cytoskeleton-regulatory complex protein sla1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sla1 PE=1 SV=1
Length = 1420
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 14/113 (12%)
Query: 6 NGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEP--------HWNGM 57
G++PH G+ P G+ P G P G P G+Q G P GM
Sbjct: 1081 TGLQPHMTGVMPQVTGVMPQMTGVVPQMTGVMPQMTGVQVQKTGAMPQQPVNYGYQVAGM 1140
Query: 58 EPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHW------NGMKPHWNGIEPHWN 104
+P G+ G++ G+ G+ GM+P GI P
Sbjct: 1141 QPQATGIISQPTGIRAQATGIMTQPTGLHTQATGMMQPTGMQPQATGIMPQAT 1193
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 43/132 (32%), Gaps = 34/132 (25%)
Query: 3 PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPH--------WNGMQPHWNGMEPHW 54
P G+ P G+ P G+ P G + + G P GMQP G+
Sbjct: 1092 PQVTGVMPQMTGVVPQMTGVMPQMTGVQVQKTGAMPQQPVNYGYQVAGMQPQATGIISQP 1151
Query: 55 NGMEPHWNG--------------------MEPHWNGMQPHWNGM------QPHWNGMEPH 88
G+ G M+P G+ P GM QP G+ P
Sbjct: 1152 TGIRAQATGIMTQPTGLHTQATGMMQPTGMQPQATGIMPQATGMMQPTGMQPQVTGIMPQ 1211
Query: 89 WNGMKPHWNGIE 100
M+P G++
Sbjct: 1212 SMPMQPQMTGVQ 1223
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 6/98 (6%)
Query: 4 HWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGM-QPHWNGMEPHWNGMEPHWN 62
GM+P G+ G+ G G GM QP GM+P G+ P
Sbjct: 1136 QVAGMQPQATGIISQPTGIRAQATGIMTQPTGLHTQATGMMQP--TGMQPQATGIMPQAT 1193
Query: 63 GM-EPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGI 99
GM +P GMQP G+ P M+P G++ G+
Sbjct: 1194 GMMQP--TGMQPQVTGIMPQSMPMQPQMTGVQVQKTGM 1229
>sp|P11414|RPB1_CRIGR DNA-directed RNA polymerase II subunit RPB1 (Fragment)
OS=Cricetulus griseus GN=POLR2A PE=3 SV=1
Length = 467
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/97 (17%), Positives = 39/97 (40%)
Query: 5 WNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGM 64
+ P ++ P ++ P ++ T P + T P ++ P ++ P + P ++
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 409
Query: 65 EPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEP 101
P ++ P ++ P ++ P + P G P
Sbjct: 410 SPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 446
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 14/84 (16%), Positives = 35/84 (41%)
Query: 19 WNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGM 78
+ P ++ T P + T P ++ P ++ P ++ P ++ P + P ++
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 409
Query: 79 QPHWNGMEPHWNGMKPHWNGIEPH 102
P ++ P ++ P ++ P
Sbjct: 410 SPTYSPTSPKYSPTSPTYSPTSPK 433
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 13/79 (16%), Positives = 34/79 (43%)
Query: 26 WNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGM 85
+ T P + T P ++ P ++ P ++ P ++ P ++ P + P ++
Sbjct: 350 YTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPT 409
Query: 86 EPHWNGMKPHWNGIEPHWN 104
P ++ P ++ P ++
Sbjct: 410 SPTYSPTSPKYSPTSPTYS 428
>sp|Q9SEH5|PMT3_TOBAC Putrescine N-methyltransferase 3 OS=Nicotiana tabacum GN=PMT3
PE=3 SV=1
Length = 381
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/89 (41%), Positives = 41/89 (46%), Gaps = 15/89 (16%)
Query: 8 MEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPH 67
M + NG H NG H NGT HRNG H NG+ H NG H NG H NG H
Sbjct: 21 MNGYQNGTSKHQNG---HQNGTSEHRNG---HQNGISEHQNG---HQNGTSEHQNG---H 68
Query: 68 WNGMQPHWNGMQPHWNGMEPHWNGMKPHW 96
NG H NG + G N +KP W
Sbjct: 69 QNGTISHDNGNELQLLGSS---NSIKPGW 94
>sp|Q8MTI2|BSL1_TRIVA Putative surface protein bspA-like OS=Trichomonas vaginalis
GN=BSPAL1 PE=4 SV=1
Length = 625
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 26/79 (32%), Positives = 35/79 (44%)
Query: 2 EPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHW 61
+P N +P N QP N +P N ++P N +P N QP N +P N +P
Sbjct: 454 QPGENPNQPGENPNQPGENPSQPGENPSQPGENPNQPGENPSQPGENPNQPGENPNQPGE 513
Query: 62 NGMEPHWNGMQPHWNGMQP 80
N +P N QP N P
Sbjct: 514 NPNQPGENPSQPGENTDDP 532
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 28/64 (43%)
Query: 41 NGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIE 100
N QP N +P N +P N +P N QP N QP N +P N +P N +
Sbjct: 444 NPNQPGENPNQPGENPNQPGENPNQPGENPSQPGENPSQPGENPNQPGENPSQPGENPNQ 503
Query: 101 PHWN 104
P N
Sbjct: 504 PGEN 507
>sp|Q49378|P32_MYCGA P32 adhesin OS=Mycoplasma gallisepticum (strain R(low / passage 15
/ clone 2)) GN=mgc2 PE=3 SV=2
Length = 294
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 27/48 (56%)
Query: 43 MQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWN 90
MQP+ GM P +N M P GM P+ GM+P +N M P GM P N
Sbjct: 175 MQPNQMGMRPGFNQMPPQMGGMPPNQMGMRPGFNQMPPQMGGMPPRPN 222
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 26/48 (54%)
Query: 57 MEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWN 104
M+P+ GM P +N M P GM P+ GM P +N M P G+ P N
Sbjct: 175 MQPNQMGMRPGFNQMPPQMGGMPPNQMGMRPGFNQMPPQMGGMPPRPN 222
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%)
Query: 37 KPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWN 83
+P+ GM+P +N M P GM P+ GM P +N M P GM P N
Sbjct: 176 QPNQMGMRPGFNQMPPQMGGMPPNQMGMRPGFNQMPPQMGGMPPRPN 222
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 8 MEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWN 55
M+P+ GM+P +N M P G P++ G +P +N M P GM P N
Sbjct: 175 MQPNQMGMRPGFNQMPPQMGGMPPNQMGMRPGFNQMPPQMGGMPPRPN 222
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 1 MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWN 48
M+P+ GM P +N M P GM P+ G P N P GM P N
Sbjct: 175 MQPNQMGMRPGFNQMPPQMGGMPPNQMGMRPGFNQMPPQMGGMPPRPN 222
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 71 MQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI 106
MQP+ GM+P +N M P GM P+ G+ P +N++
Sbjct: 175 MQPNQMGMRPGFNQMPPQMGGMPPNQMGMRPGFNQM 210
>sp|P14248|RPB1_PLAFD DNA-directed RNA polymerase II subunit RPB1 OS=Plasmodium falciparum
(isolate CDC / Honduras) GN=RPII PE=3 SV=1
Length = 2452
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 11 HWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNG 70
+N M P ++ P ++ T P + T P ++ P ++ P ++ P ++ P ++
Sbjct: 2282 QYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSP 2341
Query: 71 MQPHWNGMQP 80
P ++ P
Sbjct: 2342 TSPKYSPTSP 2351
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 4 HWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNG 63
+N M P ++ P ++ P ++ T P + T P ++ P ++ P ++ P ++
Sbjct: 2282 QYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSP 2341
Query: 64 MEPHWNGMQP 73
P ++ P
Sbjct: 2342 TSPKYSPTSP 2351
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 32/70 (45%)
Query: 18 HWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNG 77
+N M P ++ T P + T P ++ P ++ P ++ P ++ P ++ P ++
Sbjct: 2282 QYNVMSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSP 2341
Query: 78 MQPHWNGMEP 87
P ++ P
Sbjct: 2342 TSPKYSPTSP 2351
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 1 MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPH 60
M P ++ P ++ P ++ P ++ T P + T P ++ P ++ P ++ P
Sbjct: 2286 MSPVYSVTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPKYSPTSPK 2345
Query: 61 WNGMEP 66
++ P
Sbjct: 2346 YSPTSP 2351
>sp|P24928|RPB1_HUMAN DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens GN=POLR2A
PE=1 SV=2
Length = 1970
Score = 33.9 bits (76), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/92 (18%), Positives = 38/92 (41%)
Query: 10 PHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWN 69
P ++ P ++ P ++ T P + T P ++ P ++ P + P ++ P ++
Sbjct: 1858 PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYS 1917
Query: 70 GMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEP 101
P ++ P ++ P + P G P
Sbjct: 1918 PTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 1949
Score = 32.7 bits (73), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 15/86 (17%), Positives = 36/86 (41%)
Query: 16 QPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHW 75
P ++ P ++ T P + T P ++ P ++ P ++ P + P ++ P +
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916
Query: 76 NGMQPHWNGMEPHWNGMKPHWNGIEP 101
+ P ++ P ++ P + P
Sbjct: 1917 SPTSPKYSPTSPTYSPTSPKGSTYSP 1942
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/79 (17%), Positives = 34/79 (43%)
Query: 24 PHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWN 83
P ++ T P + T P ++ P ++ P ++ P ++ P + P ++ P ++
Sbjct: 1858 PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYS 1917
Query: 84 GMEPHWNGMKPHWNGIEPH 102
P ++ P ++ P
Sbjct: 1918 PTSPKYSPTSPTYSPTSPK 1936
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/80 (16%), Positives = 34/80 (42%)
Query: 25 HWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNG 84
+ T P + T P ++ P ++ P ++ P ++ P ++ P + P ++
Sbjct: 1852 EYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSP 1911
Query: 85 MEPHWNGMKPHWNGIEPHWN 104
P ++ P ++ P ++
Sbjct: 1912 TSPTYSPTSPKYSPTSPTYS 1931
>sp|P08775|RPB1_MOUSE DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus GN=Polr2a
PE=1 SV=3
Length = 1970
Score = 33.9 bits (76), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/92 (18%), Positives = 38/92 (41%)
Query: 10 PHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWN 69
P ++ P ++ P ++ T P + T P ++ P ++ P + P ++ P ++
Sbjct: 1858 PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYS 1917
Query: 70 GMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEP 101
P ++ P ++ P + P G P
Sbjct: 1918 PTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSP 1949
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 15/86 (17%), Positives = 36/86 (41%)
Query: 16 QPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHW 75
P ++ P ++ T P + T P ++ P ++ P ++ P + P ++ P +
Sbjct: 1857 SPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTY 1916
Query: 76 NGMQPHWNGMEPHWNGMKPHWNGIEP 101
+ P ++ P ++ P + P
Sbjct: 1917 SPTSPKYSPTSPTYSPTSPKGSTYSP 1942
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/79 (17%), Positives = 34/79 (43%)
Query: 24 PHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWN 83
P ++ T P + T P ++ P ++ P ++ P ++ P + P ++ P ++
Sbjct: 1858 PKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYS 1917
Query: 84 GMEPHWNGMKPHWNGIEPH 102
P ++ P ++ P
Sbjct: 1918 PTSPKYSPTSPTYSPTSPK 1936
>sp|P32521|PAN1_YEAST Actin cytoskeleton-regulatory complex protein PAN1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=PAN1 PE=1
SV=2
Length = 1480
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 7/54 (12%)
Query: 42 GMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPH 95
G+ P G P M+P+ G N +QP GM P GM P GM P
Sbjct: 446 GLNPQITGGAP--ASMQPNITG-----NALQPQTTGMMPQTTGMMPQTTGMMPQ 492
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 18/47 (38%)
Query: 21 GMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPH 67
G+ P G P N +QP GM P GM P GM P
Sbjct: 446 GLNPQITGGAPASMQPNITGNALQPQTTGMMPQTTGMMPQTTGMMPQ 492
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 56 GMEPHWNGMEPHWNGMQPH--WNGMQPHWNGMEPHWNGMKPHWNGIEPH 102
G+ P G P MQP+ N +QP GM P GM P G+ P
Sbjct: 446 GLNPQITGGAP--ASMQPNITGNALQPQTTGMMPQTTGMMPQTTGMMPQ 492
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 36/94 (38%), Gaps = 10/94 (10%)
Query: 6 NGMEPHWNGMQPHWNGMEPHWNGTEPHRN-----GTKPHWNGMQPHWNG----MEPHWNG 56
N ++P GM P GM P G P + G + +Q + G + P +G
Sbjct: 466 NALQPQTTGMMPQTTGMMPQTTGMMPQTSFGVNLGPQLTGGALQSQYTGGYGSVMPQQSG 525
Query: 57 MEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWN 90
N + + G+Q G+QP G P N
Sbjct: 526 PASMPN-LSFNQQGLQSQLTGLQPQPTGFLPPSN 558
>sp|Q6CC84|SPT5_YARLI Transcription elongation factor SPT5 OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=SPT5 PE=3 SV=1
Length = 980
Score = 33.1 bits (74), Expect = 0.44, Method: Composition-based stats.
Identities = 25/81 (30%), Positives = 29/81 (35%), Gaps = 15/81 (18%)
Query: 3 PHWNG--MEPHWN--GMQPHWNGMEPHWNGTEPHRNGTK-PHWN---GMQPHWNGM---E 51
P W G P W G P W P W G + G++ P N P W M
Sbjct: 778 PSWGGGGKTPSWGAGGKTPSWGSKTPSWGGAKTSSWGSRTPAANAGGAQTPAWGAMGNKT 837
Query: 52 PHWNGME---PHWNGME-PHW 68
P W E P W G + P W
Sbjct: 838 PSWGASESRTPAWGGAKTPAW 858
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 16 QPHWNGMEPHWNGTEPHRNGTKPHWNGMQP 45
QP NG P NG +P +NG +P +G QP
Sbjct: 439 QPRQNG--PRQNGGQPRQNGPRPDVSGAQP 466
>sp|Q6H236|PEG3_BOVIN Paternally-expressed gene 3 protein OS=Bos taurus GN=PEG3 PE=2 SV=1
Length = 2387
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 24 PHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGME-PHWNGMEPHWNGMQP 73
P W EP +PH QP + EP G+E P EP + +P
Sbjct: 2238 PEWEAAEPSGEAEQPHAEAEQPDMDADEPDGAGIEDPEERAEEPEGDDDEP 2288
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 52 PHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGME-PHWNGMKPHWNGIEP 101
P W EP +PH QP + +P G+E P +P + EP
Sbjct: 2238 PEWEAAEPSGEAEQPHAEAEQPDMDADEPDGAGIEDPEERAEEPEGDDDEP 2288
Score = 28.9 bits (63), Expect = 9.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 59 PHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMK-PHWNGIEPHWNE 105
P W EP QPH QP + EP G++ P EP ++
Sbjct: 2238 PEWEAAEPSGEAEQPHAEAEQPDMDADEPDGAGIEDPEERAEEPEGDD 2285
>sp|Q42963|PMT1_TOBAC Putrescine N-methyltransferase 1 OS=Nicotiana tabacum GN=PMT1
PE=2 SV=1
Length = 375
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 26/59 (44%), Gaps = 11/59 (18%)
Query: 1 MEPHWNGMEPHWNGMQ----PHWNGMEPHWNGTEPHRNG----TKPHWNGMQPHWNGME 51
M H NG H NG Q H NG H NGT HRNG T NG H NG E
Sbjct: 21 MNGHQNGTSEHLNGYQNGTSKHQNG---HQNGTFEHRNGHQNGTSEQQNGTISHDNGNE 76
>sp|Q6BNL1|PAN1_DEBHA Actin cytoskeleton-regulatory complex protein PAN1 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=PAN1 PE=3 SV=2
Length = 1449
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 22/59 (37%)
Query: 3 PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHW 61
P G +P G QP G +P G + KP G G P N ME H+
Sbjct: 391 PQSTGFQPQSTGFQPQSTGFQPQQTGPLQAQPTGKPGQWGFVSTPTGGIPGMNAMEQHF 449
>sp|Q9H5H4|ZN768_HUMAN Zinc finger protein 768 OS=Homo sapiens GN=ZNF768 PE=1 SV=2
Length = 540
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 24/94 (25%), Positives = 34/94 (36%), Gaps = 7/94 (7%)
Query: 7 GMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEP 66
G+EP G +P EP EP G + G+ P P + P + P
Sbjct: 57 GLEPQSPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPP----SPEFAPRSPESDSQSP 112
Query: 67 HWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIE 100
+ P + +P G EP G +P G E
Sbjct: 113 EFESQSPRY---EPQSPGYEPRSPGYEPRSPGYE 143
Score = 29.3 bits (64), Expect = 7.0, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 6/89 (6%)
Query: 1 MEPHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNG---TKPHWNGMQPHWNGMEPHWNGM 57
+EP G EP +P EP G E G P + P + P +
Sbjct: 58 LEPQSPGFEPQSPEFEPQSPRFEPESPGFESRSPGLVPPSPEFAPRSPESDSQSPEFESQ 117
Query: 58 EPHWNGMEPHWNGMQPHWNGMQPHWNGME 86
P + EP G +P G +P G E
Sbjct: 118 SPRY---EPQSPGYEPRSPGYEPRSPGYE 143
>sp|P16356|RPB1_CAEEL DNA-directed RNA polymerase II subunit RPB1 OS=Caenorhabditis elegans
GN=ama-1 PE=1 SV=3
Length = 1856
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 14/73 (19%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Query: 24 PHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWN 83
P ++ T P + T P ++ P + P +N P P ++ P ++ P +
Sbjct: 1739 PSYSPTSPQYSPTSPQYSPSSPTYTPSSPTYNPTSPR-GFSSPQYSPTSPTYSPTSPSYT 1797
Query: 84 GMEPHWNGMKPHW 96
P ++ P +
Sbjct: 1798 PSSPQYSPTSPTY 1810
>sp|P11994|SM50_STRPU 50 kDa spicule matrix protein OS=Strongylocentrotus purpuratus
GN=SM50 PE=2 SV=2
Length = 445
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 36/79 (45%), Gaps = 11/79 (13%)
Query: 16 QPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHW 75
QP G +P + G +P G QP + G +P G +P W G +P G QP
Sbjct: 219 QPGMGGRQPGF--------GNQPGMGGRQPGF-GNQPGMGGRQPGW-GNQPGVGGRQPGM 268
Query: 76 NGMQPHWNGMEPHWNGMKP 94
G QP W G +P G +P
Sbjct: 269 GGQQPGW-GNQPGVGGRQP 286
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.138 0.586
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,394,254
Number of Sequences: 539616
Number of extensions: 2409152
Number of successful extensions: 4208
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3528
Number of HSP's gapped (non-prelim): 353
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)