Query psy12338
Match_columns 106
No_of_seqs 20 out of 22
Neff 3.0
Searched_HMMs 29240
Date Fri Aug 16 16:30:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3u7r_A NADPH-dependent FMN red 3.4 3.3E+02 0.011 19.2 0.7 7 3-9 76-82 (190)
2 2jvl_A TRMBF1; coactivator, he 1.9 1E+03 0.034 14.5 1.5 13 1-13 3-15 (107)
3 2d8k_A Synaptotagmin VII; exoc 1.6 1E+03 0.035 14.6 1.2 6 99-104 72-77 (141)
4 2ep6_A MCTP2 protein; beta san 1.6 1.1E+03 0.037 14.4 1.2 14 92-105 49-62 (133)
5 1p16_C Phosphorylated peptide 1.5 1.5E+03 0.05 12.1 2.0 22 5-26 1-22 (26)
6 3b7y_A E3 ubiquitin-protein li 1.5 1.1E+03 0.039 14.5 1.2 14 92-105 62-75 (153)
7 2enp_A B/K protein; C2 type 1, 1.5 1.3E+03 0.045 14.2 1.5 14 92-105 72-85 (147)
8 1jmx_G Amine dehydrogenase; ox 1.4 1.1E+03 0.038 15.5 1.0 8 98-105 52-59 (79)
9 1pby_C Quinohemoprotein amine 1.4 1.1E+03 0.038 15.5 1.0 8 98-105 52-59 (79)
10 1rlw_A Phospholipase A2, CALB 1.3 8.8E+02 0.03 14.5 0.3 14 92-105 45-58 (126)
No 1
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=3.42 E-value=3.3e+02 Score=19.19 Aligned_cols=7 Identities=29% Similarity=0.515 Sum_probs=2.8
Q ss_pred CCCCCCc
Q psy12338 3 PHWNGME 9 (106)
Q Consensus 3 p~~ngT~ 9 (106)
||||+..
T Consensus 76 PeYn~s~ 82 (190)
T 3u7r_A 76 PEYNRSY 82 (190)
T ss_dssp CCBTTBC
T ss_pred hhhcccC
Confidence 4444433
No 2
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=1.85 E-value=1e+03 Score=14.53 Aligned_cols=13 Identities=23% Similarity=0.437 Sum_probs=6.0
Q ss_pred CCCCCCCCccCCC
Q psy12338 1 MEPHWNGMEPHWN 13 (106)
Q Consensus 1 ~~p~~ngT~P~~N 13 (106)
|.|||.|....-+
T Consensus 3 ~~~~~~~~~~~~~ 15 (107)
T 2jvl_A 3 MDPEFAGGTEGQR 15 (107)
T ss_dssp CCCCCCCCCCCCC
T ss_pred CCccccCCCcccc
Confidence 4455555443333
No 3
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.62 E-value=1e+03 Score=14.61 Aligned_cols=6 Identities=67% Similarity=1.957 Sum_probs=2.5
Q ss_pred CCCCCc
Q psy12338 99 IEPHWN 104 (106)
Q Consensus 99 t~p~~~ 104 (106)
..|-||
T Consensus 72 ~nP~wn 77 (141)
T 2d8k_A 72 LNPHWN 77 (141)
T ss_dssp SSCCCC
T ss_pred CCCccc
Confidence 344444
No 4
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=1.57 E-value=1.1e+03 Score=14.36 Aligned_cols=14 Identities=21% Similarity=0.816 Sum_probs=0.0
Q ss_pred CccCCCCCCCCCcC
Q psy12338 92 MKPHWNGIEPHWNE 105 (106)
Q Consensus 92 t~P~~ngt~p~~~~ 105 (106)
|+-.-+...|.|||
T Consensus 49 T~~~~~t~nP~wne 62 (133)
T 2ep6_A 49 THTVYKNLNPEWNK 62 (133)
T ss_dssp CCCCSSCSSCCCCE
T ss_pred eeeecCCCCCcccc
No 5
>1p16_C Phosphorylated peptide from C-terminal of RNA polymerase II; guanylyltransferase, transcription, capping, CTD, mRNA; HET: SEP G GTP; 2.70A {Candida albicans}
Probab=1.47 E-value=1.5e+03 Score=12.07 Aligned_cols=22 Identities=14% Similarity=0.440 Sum_probs=0.0
Q ss_pred CCCCccCCCCCccCCCCCCcCC
Q psy12338 5 WNGMEPHWNGMQPHWNGMEPHW 26 (106)
Q Consensus 5 ~ngT~P~~NGT~p~~NGt~p~~ 26 (106)
|.-|.|.+.=|+|.+-.++|.+
T Consensus 1 ySPtsP~ySPTSPsYsPtSpsy 22 (26)
T 1p16_C 1 YSPTSPSYSPTSPSYSPTSPSX 22 (26)
T ss_pred CCCCCCCcCCCCCCCCCCCccc
No 6
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=1.47 E-value=1.1e+03 Score=14.55 Aligned_cols=14 Identities=36% Similarity=0.755 Sum_probs=0.0
Q ss_pred CccCCCCCCCCCcC
Q psy12338 92 MKPHWNGIEPHWNE 105 (106)
Q Consensus 92 t~P~~ngt~p~~~~ 105 (106)
|+-.-+...|-|||
T Consensus 62 T~v~~~t~nP~wne 75 (153)
T 3b7y_A 62 TKTIKKSLNPKWNE 75 (153)
T ss_dssp CCCCSSCSSCCCCE
T ss_pred CccccCCCCCCCCC
No 7
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=1.45 E-value=1.3e+03 Score=14.19 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=0.0
Q ss_pred CccCCCCCCCCCcC
Q psy12338 92 MKPHWNGIEPHWNE 105 (106)
Q Consensus 92 t~P~~ngt~p~~~~ 105 (106)
|+-.-+...|.|||
T Consensus 72 T~v~~~t~nP~wne 85 (147)
T 2enp_A 72 TGVKRKTQKPVFEE 85 (147)
T ss_dssp CCCCCSCSSCCCCB
T ss_pred eecccCCCCCeEee
No 8
>1jmx_G Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.137.9.1 PDB: 1jmz_G*
Probab=1.37 E-value=1.1e+03 Score=15.54 Aligned_cols=8 Identities=25% Similarity=0.638 Sum_probs=0.0
Q ss_pred CCCCCCcC
Q psy12338 98 GIEPHWNE 105 (106)
Q Consensus 98 gt~p~~~~ 105 (106)
.++|+|++
T Consensus 52 ~~ypdW~~ 59 (79)
T 1jmx_G 52 STYQDWNA 59 (79)
T ss_dssp TTCTTTTT
T ss_pred ccCccccc
No 9
>1pby_C Quinohemoprotein amine dehydrogenase 9 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.137.9.1 PDB: 1jju_C*
Probab=1.37 E-value=1.1e+03 Score=15.54 Aligned_cols=8 Identities=25% Similarity=0.875 Sum_probs=0.0
Q ss_pred CCCCCCcC
Q psy12338 98 GIEPHWNE 105 (106)
Q Consensus 98 gt~p~~~~ 105 (106)
.++|+|++
T Consensus 52 ~~ypdW~~ 59 (79)
T 1pby_C 52 NTYPNWSA 59 (79)
T ss_dssp TTCTTTTT
T ss_pred ccCccccc
No 10
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=1.31 E-value=8.8e+02 Score=14.46 Aligned_cols=14 Identities=43% Similarity=0.793 Sum_probs=0.0
Q ss_pred CccCCCCCCCCCcC
Q psy12338 92 MKPHWNGIEPHWNE 105 (106)
Q Consensus 92 t~P~~ngt~p~~~~ 105 (106)
|+-.-+...|.|||
T Consensus 45 T~v~~~t~nP~wne 58 (126)
T 1rlw_A 45 TRHFNNDINPVWNE 58 (126)
T ss_dssp CCCCTTCSSCEEEE
T ss_pred ccccCCCCCCcccc
Done!