RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy12338
         (106 letters)



>gnl|CDD|234369 TIGR03837, efp_adjacent_2, conserved hypothetical protein, PP_1857
           family.  This model describes a conserved hypothetical
           protein that typically is encoded next to the gene efp
           for translation elongation factor P. The function is
           unknown.
          Length = 371

 Score = 27.2 bits (61), Expect = 1.6
 Identities = 6/39 (15%), Positives = 8/39 (20%), Gaps = 4/39 (10%)

Query: 36  TKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPH 74
                      WNG       +   W  +       Q H
Sbjct: 314 AAAALRAFWRAWNG----GEALSADWPALRAALPEWQQH 348



 Score = 26.5 bits (59), Expect = 2.5
 Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 4/37 (10%)

Query: 45  PHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPH 81
                    WNG       +   W  ++      Q H
Sbjct: 316 AALRAFWRAWNG----GEALSADWPALRAALPEWQQH 348



 Score = 25.7 bits (57), Expect = 5.1
 Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 4/37 (10%)

Query: 52  PHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPH 88
                    WNG       +   W  ++      + H
Sbjct: 316 AALRAFWRAWNG----GEALSADWPALRAALPEWQQH 348



 Score = 25.3 bits (56), Expect = 6.4
 Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 4/37 (10%)

Query: 66  PHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPH 102
                    WNG       +   W  ++      + H
Sbjct: 316 AALRAFWRAWNG----GEALSADWPALRAALPEWQQH 348



 Score = 24.9 bits (55), Expect = 9.8
 Identities = 6/37 (16%), Positives = 9/37 (24%), Gaps = 4/37 (10%)

Query: 17  PHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEPH 53
                    WNG E         W  ++      + H
Sbjct: 316 AALRAFWRAWNGGEA----LSADWPALRAALPEWQQH 348


>gnl|CDD|184984 PRK15023, PRK15023, L-serine deaminase; Provisional.
          Length = 454

 Score = 26.6 bits (58), Expect = 3.2
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 59  PHWNGMEPHWNGMQPHWNGMQPH-WNGME 86
           P  NGM  H   +  H NGMQ H +NG E
Sbjct: 108 PRDNGMRFHNGNLPLHENGMQIHAYNGDE 136



 Score = 26.6 bits (58), Expect = 3.3
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 52  PHWNGMEPHWNGMEPHWNGMQPH-WNG 77
           P  NGM  H   +  H NGMQ H +NG
Sbjct: 108 PRDNGMRFHNGNLPLHENGMQIHAYNG 134



 Score = 25.8 bits (56), Expect = 5.5
 Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 3   PHWNGMEPHWNGMQPHWNGMEPH-WNGTE 30
           P  NGM  H   +  H NGM+ H +NG E
Sbjct: 108 PRDNGMRFHNGNLPLHENGMQIHAYNGDE 136



 Score = 25.4 bits (55), Expect = 7.0
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 38  PHWNGMQPHWNGMEPHWNGMEPH-WNGME 65
           P  NGM+ H   +  H NGM+ H +NG E
Sbjct: 108 PRDNGMRFHNGNLPLHENGMQIHAYNGDE 136



 Score = 25.4 bits (55), Expect = 8.0
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)

Query: 66  PHWNGMQPHWNGMQPHWNGMEPH-WNG 91
           P  NGM+ H   +  H NGM+ H +NG
Sbjct: 108 PRDNGMRFHNGNLPLHENGMQIHAYNG 134



 Score = 25.0 bits (54), Expect = 8.7
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 73  PHWNGMQPHWNGMEPHWNGMKPH-WNGIE 100
           P  NGM+ H   +  H NGM+ H +NG E
Sbjct: 108 PRDNGMRFHNGNLPLHENGMQIHAYNGDE 136


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.138    0.586 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,327,399
Number of extensions: 403570
Number of successful extensions: 341
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 38
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (24.4 bits)