RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12338
         (106 letters)



>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 158

 Score = 26.2 bits (57), Expect = 0.68
 Identities = 8/37 (21%), Positives = 14/37 (37%)

Query: 66  PHWNGMQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPH 102
           P +    P  +G+   W+ ME     +   +   EP 
Sbjct: 68  PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 104



 Score = 24.6 bits (53), Expect = 2.7
 Identities = 8/38 (21%), Positives = 15/38 (39%)

Query: 37  KPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPH 74
           KP +    P  +G+   W+ ME     +   +   +P 
Sbjct: 67  KPTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 104



 Score = 23.5 bits (50), Expect = 5.5
 Identities = 8/37 (21%), Positives = 13/37 (35%)

Query: 31  PHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPH 67
           P      P  +G+   W+ ME     +   +   EP 
Sbjct: 68  PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 104



 Score = 23.1 bits (49), Expect = 9.5
 Identities = 7/37 (18%), Positives = 12/37 (32%)

Query: 3   PHWNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPH 39
           P +    P  +G+   W+ ME             +P 
Sbjct: 68  PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 104



 Score = 22.7 bits (48), Expect = 10.0
 Identities = 6/37 (16%), Positives = 14/37 (37%)

Query: 59  PHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKPH 95
           P +    P  +G+   W+ M+     +   +   +P 
Sbjct: 68  PTYATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPE 104


>d1vnsa_ a.111.1.3 (A:) Chloroperoxidase {Curvularia inaequalis
           [TaxId: 38902]}
          Length = 574

 Score = 25.6 bits (55), Expect = 1.7
 Identities = 4/45 (8%), Positives = 8/45 (17%), Gaps = 2/45 (4%)

Query: 24  PHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHW 68
             ++    H     P             P      P +      +
Sbjct: 188 YKFDDEPTHPVVLIPVDPNNP--NGPKMPFRQYHAPFYGKTTKRF 230



 Score = 24.0 bits (51), Expect = 5.9
 Identities = 4/34 (11%), Positives = 6/34 (17%)

Query: 5   WNGMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKP 38
                P      P +      +     H     P
Sbjct: 209 NGPKMPFRQYHAPFYGKTTKRFATQSEHFLADPP 242



 Score = 23.6 bits (50), Expect = 6.7
 Identities = 4/43 (9%), Positives = 9/43 (20%), Gaps = 5/43 (11%)

Query: 59  PHWNGMEPHWNGMQPH-----WNGMQPHWNGMEPHWNGMKPHW 96
             ++    H   + P           P      P +      +
Sbjct: 188 YKFDDEPTHPVVLIPVDPNNPNGPKMPFRQYHAPFYGKTTKRF 230



 Score = 23.3 bits (49), Expect = 8.2
 Identities = 2/22 (9%), Positives = 4/22 (18%)

Query: 54  WNGMEPHWNGMEPHWNGMQPHW 75
                P      P +      +
Sbjct: 209 NGPKMPFRQYHAPFYGKTTKRF 230



 Score = 23.3 bits (49), Expect = 9.4
 Identities = 2/19 (10%), Positives = 4/19 (21%)

Query: 1   MEPHWNGMEPHWNGMQPHW 19
             P      P +      +
Sbjct: 212 KMPFRQYHAPFYGKTTKRF 230


>d2gycj1 c.12.1.1 (J:4-143) Ribosomal protein L15 (L15p)
          {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 23.4 bits (50), Expect = 6.9
 Identities = 6/52 (11%), Positives = 9/52 (17%)

Query: 32 HRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWN 83
             G +  + G Q       P +                      G     N
Sbjct: 39 SGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKVEGGVVDLN 90


>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
           malonyl-CoA ACP transacylase FabD {Escherichia coli
           [TaxId: 562]}
          Length = 235

 Score = 23.2 bits (49), Expect = 8.1
 Identities = 6/36 (16%), Positives = 12/36 (33%)

Query: 71  MQPHWNGMQPHWNGMEPHWNGMKPHWNGIEPHWNEI 106
           MQ     +  H   M+P  + +      I  +   +
Sbjct: 119 MQEAVPEVPSHCALMKPAADKLAVELAKITFNAPTV 154


>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas
           aeruginosa [TaxId: 287]}
          Length = 250

 Score = 23.2 bits (49), Expect = 8.1
 Identities = 4/46 (8%), Positives = 10/46 (21%)

Query: 7   GMEPHWNGMQPHWNGMEPHWNGTEPHRNGTKPHWNGMQPHWNGMEP 52
            +E            +E  +   E  +      ++     W     
Sbjct: 125 LVENDQTPQGGRIEVLERFFRLAERQQLDLAMTFDIGNWRWQEQAA 170



 Score = 23.2 bits (49), Expect = 9.6
 Identities = 3/46 (6%), Positives = 10/46 (21%)

Query: 49  GMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWNGMEPHWNGMKP 94
            +E            +E  +   +     +   ++     W     
Sbjct: 125 LVENDQTPQGGRIEVLERFFRLAERQQLDLAMTFDIGNWRWQEQAA 170


>d1w74a_ b.62.1.1 (A:) Peptidyl-prolyl cis-trans isomerase A, PpiA
           {Mycobacterium tuberculosis [TaxId: 1773]}
          Length = 171

 Score = 22.9 bits (48), Expect = 9.1
 Identities = 11/73 (15%), Positives = 16/73 (21%)

Query: 24  PHWNGTEPHRNGTKPHWNGMQPHWNGMEPHWNGMEPHWNGMEPHWNGMQPHWNGMQPHWN 83
           P ++G   HR        G  P   G           ++                 P  N
Sbjct: 53  PFYDGAVFHRVIQGFMIQGGDPTGTGRGGPGYKFADEFHPELQFDKPYLLAMANAGPGTN 112

Query: 84  GMEPHWNGMKPHW 96
           G +      K   
Sbjct: 113 GSQFFITVGKTPH 125


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.138    0.586 

Gapped
Lambda     K      H
   0.267   0.0456    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 587,270
Number of extensions: 28673
Number of successful extensions: 467
Number of sequences better than 10.0: 1
Number of HSP's gapped: 313
Number of HSP's successfully gapped: 206
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 47 (22.6 bits)