Query psy12346
Match_columns 107
No_of_seqs 141 out of 1070
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 16:41:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcg_A Peptide methionine sulf 100.0 4.6E-54 1.6E-58 314.8 6.8 96 11-106 4-99 (146)
2 3e0o_A Peptide methionine sulf 100.0 2.3E-53 7.9E-58 310.5 9.2 95 11-106 3-97 (144)
3 3cxk_A Methionine-R-sulfoxide 100.0 4.5E-53 1.5E-57 314.3 10.1 99 8-106 31-129 (164)
4 2k8d_A Peptide methionine sulf 100.0 1.2E-53 4.2E-58 313.9 5.4 98 9-106 20-117 (151)
5 3hcj_A MSRB, peptide methionin 100.0 5E-52 1.7E-56 306.2 8.3 93 14-106 14-106 (154)
6 2l1u_A MSRB2, methionine-R-sul 100.0 3.8E-52 1.3E-56 303.8 3.9 92 15-106 2-100 (143)
7 3e0m_A Peptide methionine sulf 100.0 5.9E-49 2E-53 315.7 9.7 96 11-106 170-265 (313)
8 2kv1_A Methionine-R-sulfoxide 100.0 4.7E-35 1.6E-39 209.4 7.4 70 36-106 5-75 (124)
9 2kao_A Methionine-R-sulfoxide 100.0 2.4E-34 8.3E-39 205.7 8.1 68 38-106 7-75 (124)
10 3mao_A Methionine-R-sulfoxide 100.0 4.3E-34 1.5E-38 199.6 6.0 65 41-106 4-68 (105)
11 1pft_A TFIIB, PFTFIIBN; N-term 90.9 0.25 8.6E-06 28.6 3.4 32 45-78 19-50 (50)
12 1dl6_A Transcription factor II 90.0 0.2 7E-06 30.4 2.5 35 42-78 22-56 (58)
13 3k7a_M Transcription initiatio 68.0 3.1 0.00011 32.5 2.7 35 42-78 34-68 (345)
14 3h0g_I DNA-directed RNA polyme 59.0 3.9 0.00013 27.5 1.5 54 50-107 26-80 (113)
15 2znx_A SCFV; fluorotryptohpan, 55.4 5.1 0.00018 27.8 1.7 21 46-66 210-230 (242)
16 3tf7_C 42F3 MUT7 SCFV (42F3 al 54.1 3.7 0.00013 28.8 0.8 22 45-66 219-243 (256)
17 3k1f_M Transcription initiatio 53.1 1.4 4.7E-05 33.2 -1.7 32 45-78 37-68 (197)
18 3gox_A Restriction endonucleas 48.7 24 0.00082 26.6 4.5 57 20-105 118-174 (200)
19 1vq8_1 50S ribosomal protein L 44.3 9 0.00031 23.5 1.3 28 48-75 15-43 (57)
20 3uzq_A Anti-dengue MAB 4E11; d 43.9 10 0.00034 26.4 1.7 22 45-66 216-239 (253)
21 1twf_I B12.6, DNA-directed RNA 43.2 11 0.00038 25.4 1.8 15 93-107 66-80 (122)
22 4a18_A RPL37, ribosomal protei 41.5 9.3 0.00032 25.7 1.1 27 49-75 15-41 (94)
23 3j21_e 50S ribosomal protein L 41.5 12 0.0004 23.4 1.5 25 51-75 18-43 (62)
24 3omz_A Human vdelta1 gamma del 41.5 8.7 0.0003 26.8 1.0 11 45-55 218-228 (259)
25 3iz5_l 60S ribosomal protein L 40.5 9.3 0.00032 25.7 1.0 26 50-75 16-41 (94)
26 2zkr_2 60S ribosomal protein L 40.2 14 0.00049 24.8 1.9 32 48-79 14-45 (97)
27 2atp_B T-cell surface glycopro 37.7 11 0.00039 23.3 1.1 12 45-56 88-99 (115)
28 1tvd_A T cell receptor, ES204 37.0 12 0.00041 23.2 1.1 12 45-56 85-96 (116)
29 2q20_A VK1 O18/O8 germline lig 35.5 17 0.0006 22.2 1.7 13 45-57 82-94 (109)
30 1qfw_M FV, antibody (anti beta 35.1 21 0.00073 21.8 2.0 14 44-57 79-92 (108)
31 1twf_L ABC10-alpha, DNA-direct 34.5 61 0.0021 20.1 4.1 55 22-78 2-58 (70)
32 3gkz_A Anti-methamphetamine si 34.2 15 0.0005 25.5 1.3 22 45-66 221-244 (257)
33 1sjv_A R9; camelids antibody, 34.2 22 0.00075 21.9 2.0 12 46-57 88-99 (114)
34 1eeq_A Kappa-4 immunoglobulin 34.0 16 0.00053 22.6 1.3 12 45-56 86-97 (114)
35 1o4y_A Beta-agarase A; glycosi 33.4 6.4 0.00022 29.7 -0.8 18 60-78 105-123 (288)
36 1jhl_L IGG1-kappa D11.15 FV (l 33.3 24 0.00081 21.4 2.0 14 44-57 79-92 (108)
37 2z35_A T-cell receptor alpha-c 33.1 19 0.00065 22.1 1.5 13 44-56 80-92 (112)
38 1pew_A JTO2, A lambda-6 type i 32.9 13 0.00045 22.8 0.8 11 46-56 82-92 (109)
39 3qt1_I DNA-directed RNA polyme 31.7 30 0.001 23.9 2.5 13 94-106 87-99 (133)
40 3h2y_A GTPase family protein; 30.6 11 0.00036 29.5 0.0 12 52-63 6-17 (368)
41 3azy_A Laminarinase; beta-jell 30.5 8.1 0.00028 28.9 -0.6 18 61-78 99-117 (272)
42 2w39_A Putative laminarinase; 30.1 8 0.00027 29.9 -0.8 19 60-78 84-104 (298)
43 2i24_N NEW antigen receptor PB 29.8 14 0.00047 23.9 0.5 12 45-56 75-86 (121)
44 2rps_A Chemokine; peptide, imm 28.9 18 0.0006 19.8 0.7 8 33-40 22-29 (32)
45 2vy0_A Endo-beta-1,3-glucanase 28.0 9.1 0.00031 28.3 -0.8 19 60-78 103-122 (264)
46 3ec1_A YQEH GTPase; atnos1, at 27.6 13 0.00044 29.0 0.0 12 52-63 6-17 (369)
47 3zyq_A Hepatocyte growth facto 27.5 75 0.0026 23.2 4.2 16 23-38 130-145 (226)
48 2e27_L Anti-ciguatoxin antibod 27.5 19 0.00064 22.8 0.8 12 45-56 82-93 (119)
49 1x9q_A SCFV, 4M5.3 anti-fluore 27.3 18 0.00062 25.4 0.8 19 46-64 242-262 (268)
50 1e8j_A Rubredoxin; iron-sulfur 27.1 32 0.0011 20.1 1.7 18 50-74 3-20 (52)
51 2v3b_B Rubredoxin 2, rubredoxi 26.9 32 0.0011 20.4 1.7 19 50-75 3-21 (55)
52 3umt_A SCFV heavy chain and li 26.9 21 0.00072 24.7 1.0 12 45-56 217-228 (256)
53 1sq2_N Novel antigen receptor; 26.4 27 0.00092 21.7 1.4 12 45-56 75-86 (113)
54 3juy_B 3B3 single chain varian 26.3 22 0.00074 24.6 1.0 12 45-56 229-240 (256)
55 2yz1_A Tyrosine-protein phosph 26.3 23 0.00078 21.8 1.0 12 45-56 87-98 (120)
56 1dxg_A Desulforedoxin; non-hem 26.2 30 0.001 18.6 1.4 16 46-61 2-17 (36)
57 2xt1_B Camelid VHH 9; viral pr 26.1 28 0.00097 22.0 1.5 12 45-56 90-101 (121)
58 1yk4_A Rubredoxin, RD; electro 26.1 34 0.0012 20.0 1.7 19 50-75 2-20 (52)
59 3m45_A Cell adhesion molecule 25.8 23 0.00079 20.7 1.0 13 45-57 80-92 (108)
60 2lo3_A SAGA-associated factor 25.5 19 0.00066 21.0 0.5 18 46-63 13-30 (44)
61 3s35_X Vascular endothelial gr 25.4 23 0.0008 21.6 1.0 13 45-57 83-95 (122)
62 1i3g_L Antibody FV fragment; a 25.1 28 0.00096 21.4 1.3 12 45-56 83-94 (111)
63 2hyk_A Beta-1,3-glucanase; fam 24.8 11 0.00038 27.5 -0.8 19 60-78 89-108 (245)
64 2k1m_A Myosin-binding protein 24.8 32 0.0011 20.2 1.5 12 44-55 71-82 (95)
65 3fac_A Putative uncharacterize 24.7 23 0.00078 23.1 0.8 18 47-64 64-81 (118)
66 1i8k_A Epidermal growth factor 24.6 25 0.00085 21.4 1.0 12 45-56 80-91 (107)
67 2e6p_A Obscurin-like protein 1 24.2 38 0.0013 20.0 1.8 14 44-57 73-86 (104)
68 1nqb_A Single-chain antibody f 24.2 28 0.00095 24.4 1.3 21 46-66 206-228 (256)
69 1j05_L T84.66 antibody, anti-C 23.8 26 0.00089 21.4 1.0 13 45-57 84-96 (111)
70 1eaj_A Coxsackie virus and ade 23.5 27 0.00092 20.7 1.0 12 46-57 99-110 (126)
71 1x6m_A GFA, glutathione-depend 23.4 34 0.0012 24.5 1.7 20 46-65 94-113 (196)
72 2edf_A Obscurin; beta-sandwich 23.2 37 0.0013 20.0 1.5 13 45-57 72-84 (103)
73 3so5_A LIG-3, leucine-rich rep 23.1 28 0.00095 20.2 1.0 12 45-56 85-96 (112)
74 3r8b_B G5-8, enterotoxin type 23.1 25 0.00085 22.4 0.8 11 46-56 89-99 (125)
75 1g1c_A Immunoglobulin-like dom 23.1 28 0.00096 20.2 1.0 13 45-57 71-83 (99)
76 3udw_C Poliovirus receptor; PV 23.0 28 0.00095 20.6 1.0 12 45-56 88-99 (118)
77 1h5b_A Murine T cell receptor 23.0 28 0.00094 21.3 1.0 12 45-56 80-91 (113)
78 3b9v_A Heavy chain variable do 23.0 34 0.0012 21.2 1.4 12 45-56 88-99 (120)
79 2dm7_A KIAA1556 protein; beta- 22.9 36 0.0012 20.3 1.4 12 44-55 70-81 (108)
80 2edj_A Roundabout homolog 2; K 22.9 37 0.0013 19.8 1.5 14 44-57 70-83 (100)
81 2or8_A Hepatitis A virus cellu 22.7 28 0.00097 21.0 1.0 12 46-57 83-94 (116)
82 1qyp_A RNA polymerase II; tran 22.7 41 0.0014 19.4 1.6 14 94-107 10-23 (57)
83 4hwu_A Fibroblast growth facto 22.5 29 0.001 20.2 1.0 13 45-57 60-72 (95)
84 1dlf_L Anti-dansyl immunoglobu 22.5 29 0.00098 21.3 1.0 12 45-56 85-96 (113)
85 2jju_A Signal regulatory prote 22.4 29 0.00098 21.9 1.0 11 46-56 84-94 (127)
86 1gl4_B Basement membrane-speci 22.3 30 0.001 20.3 1.0 14 45-58 71-84 (98)
87 2cpc_A KIAA0657 protein; immun 22.3 48 0.0017 19.7 2.0 14 44-57 76-89 (113)
88 2ens_A Advanced glycosylation 22.2 39 0.0013 19.8 1.5 15 44-58 65-79 (96)
89 4rxn_A Rubredoxin; electron tr 22.2 40 0.0014 20.0 1.5 19 50-75 3-21 (54)
90 1mqk_L Antibody 7E2 FV fragmen 22.1 40 0.0014 21.1 1.7 12 46-57 81-92 (120)
91 2q87_A CMRF35-H antigen; all-b 22.1 30 0.001 21.0 1.0 12 46-57 78-89 (110)
92 3bj9_1 Immunoglobulin IOTA cha 22.1 29 0.001 21.2 1.0 12 45-56 86-97 (116)
93 2yuv_A Myosin-binding protein 22.1 39 0.0013 19.9 1.5 11 45-55 72-82 (100)
94 2qhl_A Novel immune-type recep 22.1 30 0.001 21.2 1.0 12 45-56 85-96 (111)
95 1wit_A Twitchin 18TH IGSF modu 21.9 30 0.001 20.0 1.0 13 46-58 68-80 (93)
96 2ckn_A Basic fibroblast growth 21.9 31 0.0011 20.3 1.0 12 45-56 69-80 (95)
97 3iy0_H FAB 14, heavy domain; c 21.8 31 0.0011 21.7 1.0 12 45-56 88-99 (120)
98 1y02_A CARP2, FYVE-ring finger 21.6 21 0.0007 24.4 0.1 15 93-107 29-43 (120)
99 2v9t_A Roundabout homolog 1; s 21.6 37 0.0013 20.5 1.3 13 45-57 81-93 (117)
100 3irg_A Titin; IG-like, titin, 21.5 31 0.0011 19.8 1.0 12 45-56 72-83 (100)
101 2coq_A NEW antigen receptor va 21.5 24 0.00084 21.5 0.5 12 45-56 75-86 (108)
102 1zox_A CLM-1; IG-superfamily, 21.5 31 0.0011 20.9 1.0 12 46-57 84-95 (113)
103 3cx2_A Myosin-binding protein 21.3 31 0.0011 20.8 1.0 14 45-58 81-94 (108)
104 2d9c_A Signal-regulatory prote 21.3 43 0.0015 21.1 1.7 12 45-56 88-99 (136)
105 2kdg_A Myotilin; immonoglobuli 21.3 32 0.0011 20.0 1.0 12 45-56 71-82 (100)
106 3dmm_D T-cell surface glycopro 21.2 32 0.0011 22.9 1.1 12 45-56 91-102 (150)
107 2ywz_A NEW antigen receptor va 21.2 32 0.0011 21.2 1.0 12 45-56 75-86 (111)
108 1u2h_A APEG-1, aortic preferen 21.1 32 0.0011 19.9 1.0 12 45-56 71-82 (99)
109 4fk7_A Toxin certhrax, putativ 21.1 55 0.0019 23.2 2.4 18 15-32 22-39 (229)
110 2cqv_A MLCK, myosin light chai 21.0 45 0.0015 20.1 1.7 13 45-57 72-84 (114)
111 2ghw_B Anti-SARS SCFV antibody 21.0 35 0.0012 23.1 1.3 12 45-56 214-225 (247)
112 2cr3_A Basic fibroblast growth 21.0 46 0.0016 19.7 1.7 14 44-57 62-75 (99)
113 3caf_A Fibroblast growth facto 20.8 33 0.0011 20.0 1.0 13 45-57 74-86 (100)
114 2ptt_A CD48 antigen; CD244, CD 20.7 33 0.0011 20.7 1.0 11 46-56 83-93 (110)
115 2yc1_A Single chain antibody f 20.7 33 0.0011 21.1 1.0 12 45-56 88-99 (117)
116 3khq_A B-cell antigen receptor 20.6 41 0.0014 21.8 1.4 13 45-57 86-98 (133)
117 2yr3_A Myosin light chain kina 20.6 37 0.0013 19.7 1.2 13 45-57 73-85 (99)
118 2edh_A Obscurin; structural ge 20.5 47 0.0016 20.0 1.6 12 44-55 81-92 (113)
119 3puc_A Titin; I-SET IG-like do 20.5 34 0.0012 19.7 1.0 12 45-56 71-82 (99)
120 1a2y_B IGG1-kappa D1.3 FV (hea 20.5 33 0.0011 21.2 1.0 12 45-56 87-98 (116)
121 1oaq_L Light chain; antibody, 20.4 33 0.0011 21.3 1.0 12 45-56 82-93 (120)
122 2lu7_A Obscurin-like protein 1 20.4 48 0.0017 19.7 1.7 12 44-55 59-70 (84)
123 1x44_A Myosin-binding protein 20.3 44 0.0015 19.8 1.4 13 45-57 73-85 (103)
124 3bp6_A Programmed cell death p 20.2 34 0.0012 21.3 1.0 11 46-56 83-93 (117)
125 1ncn_A T lymphocyte activation 20.0 35 0.0012 20.5 1.0 11 46-56 79-89 (110)
126 3k74_B Nanobody; immunoglobuli 20.0 40 0.0014 20.9 1.3 12 45-56 86-97 (115)
127 1dqt_A CTLA4, cytotoxic T lymp 20.0 35 0.0012 21.1 1.0 11 45-55 84-94 (117)
128 3bfo_A Mucosa-associated lymph 20.0 35 0.0012 19.7 1.0 12 46-57 60-71 (91)
No 1
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A
Probab=100.00 E-value=4.6e-54 Score=314.83 Aligned_cols=96 Identities=40% Similarity=0.626 Sum_probs=94.4
Q ss_pred cCCHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEEeec
Q psy12346 11 KINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKD 90 (107)
Q Consensus 11 ~~sd~ewk~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D 90 (107)
++||+|||++|||+||+|||++||||||||+|++++++|+|+|++||+|||+|++|||||||||||++||++++|.++.|
T Consensus 4 ~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D 83 (146)
T 3hcg_A 4 KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSGCGWPSFTRPIDAKSVTEHDD 83 (146)
T ss_dssp CCCHHHHHHHSBHHHHHHHHHCCCCCTTCSGGGGCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESSCSSGGGEEEEEE
T ss_pred CCCHHHHHhhCCHHHHHHHHHcCCCCCCCCCCcCCCCCEEEEecCCCcccccCcccccCCCCChhhccccCCCceEEeec
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEeCCCCC
Q psy12346 91 TSHGKLYGDLVSSHPK 106 (107)
Q Consensus 91 ~s~gm~RtEV~C~~c~ 106 (107)
.|+||+||||+|++|+
T Consensus 84 ~s~gm~RtEV~C~~Cg 99 (146)
T 3hcg_A 84 FSYNMRRTEVRSHAAD 99 (146)
T ss_dssp EETTEEEEEEEETTTC
T ss_pred CCCCcEEEEEEeCCCC
Confidence 9999999999999997
No 2
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A
Probab=100.00 E-value=2.3e-53 Score=310.52 Aligned_cols=95 Identities=45% Similarity=0.769 Sum_probs=92.5
Q ss_pred cCCHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEEeec
Q psy12346 11 KINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKD 90 (107)
Q Consensus 11 ~~sd~ewk~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D 90 (107)
.++|+|||++|||+||+|||++||||||||+|++++++|+|+|++||+|||+|++|||||||||||++||++ +|.++.|
T Consensus 3 ~~s~~ew~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~pi~~-~v~~~~D 81 (144)
T 3e0o_A 3 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQCGWPSFTKPIEE-EVEEKLD 81 (144)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHCCCCCTTCSTTSSCCCSEEEEETTTCCEEEETTTBCCCTTSSCEESCCSTT-TEEEEEE
T ss_pred CCCHHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCcCCCEEEEeCCCCcccccCcccccCCCCCcccCchhcc-ceEEeec
Confidence 357999999999999999999999999999999999999999999999999999999999999999999977 9999999
Q ss_pred CCCCceeeEEeCCCCC
Q psy12346 91 TSHGKLYGDLVSSHPK 106 (107)
Q Consensus 91 ~s~gm~RtEV~C~~c~ 106 (107)
.|+||+||||+|++|+
T Consensus 82 ~s~gm~RtEV~C~~Cg 97 (144)
T 3e0o_A 82 TSHGMIRTEVRSRTAD 97 (144)
T ss_dssp CCTTSCEEEEEETTTC
T ss_pred CCCCceEEEEEcCCCC
Confidence 9999999999999997
No 3
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A
Probab=100.00 E-value=4.5e-53 Score=314.33 Aligned_cols=99 Identities=37% Similarity=0.745 Sum_probs=96.1
Q ss_pred CCccCCHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEE
Q psy12346 8 GGCKINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKL 87 (107)
Q Consensus 8 ~~~~~sd~ewk~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~ 87 (107)
..++++|+|||++|||+||+|||++||||||||+||+++++|+|+|++||+|||+|++|||||||||||++||.+++|.+
T Consensus 31 ~~~~~s~~ewr~~Ltp~qy~V~r~~GTErpftg~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSGcGWPSF~~pi~~~~V~~ 110 (164)
T 3cxk_A 31 YPYPKDDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCGWPSYFKPIDGEVIDE 110 (164)
T ss_dssp CCSCCCHHHHHHHSCHHHHHHHHHCCCCCTTCSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSTTSEEE
T ss_pred cccCCCHHHHHhhCCHHHHHHHHhcCCCCCCcccccccCCCeEEEccCCCccccCCchhccCCCCCcccCcccCCCceEE
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCceeeEEeCCCCC
Q psy12346 88 TKDTSHGKLYGDLVSSHPK 106 (107)
Q Consensus 88 ~~D~s~gm~RtEV~C~~c~ 106 (107)
+.|.|+||.||||+|++|+
T Consensus 111 ~~D~s~gm~RtEV~C~~Cg 129 (164)
T 3cxk_A 111 KMDYTHGMTRVEVRCNQCG 129 (164)
T ss_dssp EEECGGGCCEEEEEETTTC
T ss_pred eECCCCCcEEEEEEeCCCC
Confidence 9999999999999999997
No 4
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.2e-53 Score=313.94 Aligned_cols=98 Identities=38% Similarity=0.788 Sum_probs=95.5
Q ss_pred CccCCHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEEe
Q psy12346 9 GCKINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLT 88 (107)
Q Consensus 9 ~~~~sd~ewk~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~ 88 (107)
.+.++|+|||++|||+||+|||++||||||||+|++++++|+|+|++||+|||+|++|||||||||||++||.+++|.++
T Consensus 20 ~~~~s~~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~V~~~ 99 (151)
T 2k8d_A 20 RIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGTDLFDSETKFDSGTGWPSFYDVVSEHNIKLR 99 (151)
T ss_dssp CSCCCTTGGGTTSCTTHHHHHHHTTCSSSCSCCCCCCCSCSEEEETTTTEEEEEGGGSCCSTTCCSEESCCSCTTSEECC
T ss_pred ccCCCHHHHHhhCCHHHHHHHHhcCCCCCCccCCcCCCCCEEEEecCCCCcccCCcccccCCCCCcccCcccCCCceEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999998999999
Q ss_pred ecCCCCceeeEEeCCCCC
Q psy12346 89 KDTSHGKLYGDLVSSHPK 106 (107)
Q Consensus 89 ~D~s~gm~RtEV~C~~c~ 106 (107)
.|.|+||.||||+|++|+
T Consensus 100 ~D~s~gm~RtEV~C~~Cg 117 (151)
T 2k8d_A 100 EDRSLGMVRCEVLCARCD 117 (151)
T ss_dssp CCBTTSSCEEEEEETTEE
T ss_pred eCCCCCceEEEEEeCCCC
Confidence 999999999999999996
No 5
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Probab=100.00 E-value=5e-52 Score=306.17 Aligned_cols=93 Identities=38% Similarity=0.691 Sum_probs=91.2
Q ss_pred HHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEEeecCCC
Q psy12346 14 KEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKDTSH 93 (107)
Q Consensus 14 d~ewk~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~ 93 (107)
.+|||++|||+||+|||++||||||||+|++++++|+|+|++||+|||+|++|||||||||||++||.+++|.++.|.|+
T Consensus 14 ~~e~~~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~ 93 (154)
T 3hcj_A 14 RDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPLFRSNAKFDSGTGWPSFFAPYDPAHVREIRDTSY 93 (154)
T ss_dssp HHHHHHTSCHHHHHHHSCCSSSCCCCCCCCSSCSSEEEEETTTCCEEEEECTTCCCCTTSSTTEEESCGGGEEEECCTTT
T ss_pred HHHHHhhCCHHHHHHHHhcCCCCCCcCCCCCCCCCEEEEccCCCCccccCcccccCCCCCcccccccCccceEEeecCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred CceeeEEeCCCCC
Q psy12346 94 GKLYGDLVSSHPK 106 (107)
Q Consensus 94 gm~RtEV~C~~c~ 106 (107)
||+||||+|++|+
T Consensus 94 gm~RtEV~C~~Cg 106 (154)
T 3hcj_A 94 GMIRTEIVCARCD 106 (154)
T ss_dssp TTSCEEEEETTTC
T ss_pred CceEEEEEeCCCC
Confidence 9999999999997
No 6
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}
Probab=100.00 E-value=3.8e-52 Score=303.83 Aligned_cols=92 Identities=43% Similarity=0.777 Sum_probs=90.2
Q ss_pred HHHHhcCCHHHHHHHhhcCCCCCCCCCCCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccC-------CCCeEE
Q psy12346 15 EELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLD-------QGKVKL 87 (107)
Q Consensus 15 ~ewk~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~-------~~~v~~ 87 (107)
+|||++|||+||+|||++||||||||+|++++++|+|+|++||+|||+|++|||||||||||++||. +++|.+
T Consensus 2 ~ewr~~Ltp~qy~V~r~~gTE~pftg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~~~~~~~~V~~ 81 (143)
T 2l1u_A 2 ADWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPSFSEAYGSKGSDESHTGILR 81 (143)
T ss_dssp CCSHHHHSCSHHHHHHHTTCCCSCCGGGSSCCCCEEEEESSSSCEEEEGGGBCTTTTCCSBBSSCCSCCTTHHHHTCEEE
T ss_pred hHHHhhCCHHHHHHHHhcCCCCCCcCCCcCCcCCeEEEeCCCCCeeecCcccccCCCCChhhchhhccccccCCCCceEE
Confidence 6899999999999999999999999999999999999999999999999999999999999999996 789999
Q ss_pred eecCCCCceeeEEeCCCCC
Q psy12346 88 TKDTSHGKLYGDLVSSHPK 106 (107)
Q Consensus 88 ~~D~s~gm~RtEV~C~~c~ 106 (107)
+.|.|+||+||||+|++|+
T Consensus 82 ~~D~s~gm~RtEV~C~~Cg 100 (143)
T 2l1u_A 82 RLDTSLGCPRMEVVCKQCE 100 (143)
T ss_dssp EEECTTSSCEEEEEESSSC
T ss_pred eecccCCceEEEEEECCCC
Confidence 9999999999999999997
No 7
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Probab=100.00 E-value=5.9e-49 Score=315.70 Aligned_cols=96 Identities=40% Similarity=0.657 Sum_probs=94.3
Q ss_pred cCCHHHHHhcCCHHHHHHHhhcCCCCCCCCCCCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEEeec
Q psy12346 11 KINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKD 90 (107)
Q Consensus 11 ~~sd~ewk~~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D 90 (107)
++||+|||++|||+||+|||++||||||||+|++++++|+|+|++||+|||+|++|||||||||||++||++++|.++.|
T Consensus 170 ~~~~~ew~~~Lt~~qy~V~r~~gTE~pftg~y~~~~~~G~Y~c~~cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~D 249 (313)
T 3e0m_A 170 KPSQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCGWPSFSRPLSKELIHYYKD 249 (313)
T ss_dssp CCCHHHHHHHSCHHHHHHHHHCCCCCSSSSTTTTCCCSEEEEETTTCCEEEEGGGBCCCCSSSCEESSCSSGGGEEEEEE
T ss_pred cCCHHHHHhcCCHHHHHHHHhcCCCCCCCCCCCCCCCCeEEEecCCCccccCCCccccCCCCCcccCcccCCCceEEeec
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeEEeCCCCC
Q psy12346 91 TSHGKLYGDLVSSHPK 106 (107)
Q Consensus 91 ~s~gm~RtEV~C~~c~ 106 (107)
.|+||+||||+|++|+
T Consensus 250 ~s~gm~RtEv~c~~c~ 265 (313)
T 3e0m_A 250 LSHGMERIEVRSRSGS 265 (313)
T ss_dssp CCTTCCEEEEEESSSC
T ss_pred CCCCcEEEEEECCCCC
Confidence 9999999999999997
No 8
>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}
Probab=100.00 E-value=4.7e-35 Score=209.39 Aligned_cols=70 Identities=24% Similarity=0.516 Sum_probs=64.6
Q ss_pred CCCCCC-CCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEEeecCCCCceeeEEeCCCCC
Q psy12346 36 RPFSGK-YNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKDTSHGKLYGDLVSSHPK 106 (107)
Q Consensus 36 ~pfsg~-y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~gm~RtEV~C~~c~ 106 (107)
.+|+|+ |++++++|+|+|++||+|||+|++|||||||||||++||++++|.+..|.+ +|+||||+|++|+
T Consensus 5 ~~F~ge~y~~~~e~G~Y~C~~Cg~pLF~S~~KfdSg~GWPSF~~~i~~~~v~~~~d~~-~~~r~Ev~C~~Cg 75 (124)
T 2kv1_A 5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN-RPEALKVSCGKCG 75 (124)
T ss_dssp CCCCSCSGGGTTCCEEEEETTTCCBCCCTTSCCCCCSSSCCBSCCCCCSSCEEEECSS-STTCEEEECTTTT
T ss_pred cCccCccccCCCCCEEEEecCCCCcccccCCcccCCCCCceeecccccceEEEEeccC-CceEEEEEEecCC
Confidence 379999 678899999999999999999999999999999999999999998877755 6779999999997
No 9
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant, selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Probab=100.00 E-value=2.4e-34 Score=205.70 Aligned_cols=68 Identities=25% Similarity=0.551 Sum_probs=63.6
Q ss_pred CCCC-CCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEEeecCCCCceeeEEeCCCCC
Q psy12346 38 FSGK-YNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKDTSHGKLYGDLVSSHPK 106 (107)
Q Consensus 38 fsg~-y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~gm~RtEV~C~~c~ 106 (107)
|+|+ |++++++|+|+|++||+|||+|++|||||||||||++||++++|.++.|.+ +|.||||+|++|+
T Consensus 7 ~~ge~y~~~~~~GiY~C~~Cg~pLF~S~~KFdSG~GWPSF~~pi~~~~v~~~~D~~-~~~RtEV~C~~Cg 75 (124)
T 2kao_A 7 FGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKN-RPEALKVSCGKCG 75 (124)
T ss_dssp CCSCTTTTCCCCCEEEESSSCCCCCCTTTSCCCCCSSCCBSCCCCCSSCEEEECSS-CTTCEEEECTTTT
T ss_pred cccccccCCCCCEEEEeCCCCCccccCcccccCCCCChhhCccCCccceEEEecCC-CCCEEEEEeCCCC
Confidence 5787 789999999999999999999999999999999999999989999999864 5899999999997
No 10
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}
Probab=100.00 E-value=4.3e-34 Score=199.55 Aligned_cols=65 Identities=23% Similarity=0.489 Sum_probs=62.0
Q ss_pred CCCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEEeecCCCCceeeEEeCCCCC
Q psy12346 41 KYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKDTSHGKLYGDLVSSHPK 106 (107)
Q Consensus 41 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~gm~RtEV~C~~c~ 106 (107)
+|++++++|+|+|++||+|||+|++|||||||||||++||++++|.++.|.+ +|.||||+|++|+
T Consensus 4 ~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~~-~~~RtEV~C~~C~ 68 (105)
T 3mao_A 4 VFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHN-RSEALKVSCGKCG 68 (105)
T ss_dssp CCTTCCCSEEEEETTTCCEEEEGGGEECCSSSSCEESCCSSTTSEEEEECTT-STTEEEEEETTTC
T ss_pred cccCCCCCEEEEcCCCCCccccCCcccCCCCCChhhccccCCCceEEEecCC-CCCEEEEEeCCCC
Confidence 6999999999999999999999999999999999999999999999999965 5899999999997
No 11
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=90.91 E-value=0.25 Score=28.58 Aligned_cols=32 Identities=28% Similarity=0.621 Sum_probs=26.1
Q ss_pred CCCCeEEEeccCCCccccCCCcccCCCCCccccc
Q psy12346 45 NTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFND 78 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (107)
..+.|..+|..||..+- +.-.+.|.-|.+|..
T Consensus 19 d~~~gelvC~~CG~v~~--e~~id~~~ewr~f~~ 50 (50)
T 1pft_A 19 DPERGEIVCAKCGYVIE--ENIIDMGPEWRAFDA 50 (50)
T ss_dssp ETTTTEEEESSSCCBCC--CCCCCCCSSSSCCCC
T ss_pred cCCCCeEECcccCCccc--ccccccCCcccccCC
Confidence 45789999999999874 455789999999963
No 12
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=89.98 E-value=0.2 Score=30.43 Aligned_cols=35 Identities=20% Similarity=0.553 Sum_probs=28.9
Q ss_pred CCCCCCCeEEEeccCCCccccCCCcccCCCCCccccc
Q psy12346 42 YNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFND 78 (107)
Q Consensus 42 y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (107)
+....+.|.++|..||.-| .+.-.|.|.-|.+|..
T Consensus 22 lv~D~~~ge~vC~~CGlVl--~e~~iD~gpEWR~F~~ 56 (58)
T 1dl6_A 22 LVEDYRAGDMICPECGLVV--GDRVIDVGSEWRTFSN 56 (58)
T ss_dssp CEECSSSCCEECTTTCCEE--CCSCCCCCCSCCCSCC
T ss_pred eeEeCCCCeEEeCCCCCEE--eccccccCCcccccCC
Confidence 3334688999999999988 5667899999999975
No 13
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=68.04 E-value=3.1 Score=32.53 Aligned_cols=35 Identities=23% Similarity=0.545 Sum_probs=27.6
Q ss_pred CCCCCCCeEEEeccCCCccccCCCcccCCCCCccccc
Q psy12346 42 YNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFND 78 (107)
Q Consensus 42 y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (107)
.......|.++|..||.-| .+.-.|.|.-|-+|..
T Consensus 34 iv~D~~~G~~vC~~CG~Vl--~e~~id~~~EwR~F~~ 68 (345)
T 3k7a_M 34 IVERFSEGDVVCALCGLVL--SDKLVDTRSEWRTFSN 68 (345)
T ss_dssp CCCCSSSCSCCCSSSCCCC--CCCCCCTTCCCCCC--
T ss_pred eEEECCCCCEecCCCCeEc--ccccccCCcccccccc
Confidence 3344679999999999998 6677899999999974
No 14
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=59.04 E-value=3.9 Score=27.46 Aligned_cols=54 Identities=9% Similarity=0.117 Sum_probs=26.6
Q ss_pred EEEeccCCCccccCCC-cccCCCCCcccccccCCCCeEEeecCCCCceeeEEeCCCCCC
Q psy12346 50 TYTCIVCAQPLFSSQT-KFDSGCGWPAFNDVLDQGKVKLTKDTSHGKLYGDLVSSHPKR 107 (107)
Q Consensus 50 ~Y~C~~Cg~pLF~S~~-KFdSg~GWPSF~~pi~~~~v~~~~D~s~gm~RtEV~C~~c~~ 107 (107)
.|+|..|+..-...+. .|.. --+.+.-....|....+.-....||++.|.+|+.
T Consensus 26 ~~~C~~C~y~~~~~~~~v~~~----~~~~~~~e~~~v~~~~~~~~tlp~~~~~Cp~C~~ 80 (113)
T 3h0g_I 26 RLACRNCDYSEIAATSKVYRH----ELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQ 80 (113)
T ss_dssp CEECSSSCCEECCSCSEEEEC----CCCSCSCTTCTTCTTSTTCSSSCBCCSCCSSSCC
T ss_pred EEECCCCCCeEEcCCCeEEEE----EEecccccccceeccccccccCCCcccCCCCCCC
Confidence 7999999875543321 1211 0111111111122111222456789999999973
No 15
>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*
Probab=55.41 E-value=5.1 Score=27.85 Aligned_cols=21 Identities=19% Similarity=0.313 Sum_probs=15.7
Q ss_pred CCCeEEEeccCCCccccCCCc
Q psy12346 46 TESGTYTCIVCAQPLFSSQTK 66 (107)
Q Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~K 66 (107)
.+.|+|.|++.+..+|...++
T Consensus 210 ~D~G~Y~C~a~~~~~fG~gt~ 230 (242)
T 2znx_A 210 EDTATYYCANXDGDYXGQGTL 230 (242)
T ss_dssp GGCEEEEEEETTSSCBCCCEE
T ss_pred CcCEEEEEeccCCcccCCCeE
Confidence 479999999987656655544
No 16
>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}
Probab=54.12 E-value=3.7 Score=28.84 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=16.8
Q ss_pred CCCCeEEEecc---CCCccccCCCc
Q psy12346 45 NTESGTYTCIV---CAQPLFSSQTK 66 (107)
Q Consensus 45 ~~~~G~Y~C~~---Cg~pLF~S~~K 66 (107)
..+.|+|.|++ +|..+|...+|
T Consensus 219 ~~DsG~Y~C~a~n~~g~~~fG~gt~ 243 (256)
T 3tf7_C 219 PSQTSLYFCASSDAPGQLYFGEGSK 243 (256)
T ss_dssp GGGCEEEEEEEEEETTEEEECCCEE
T ss_pred HHHCEEEEEEecCCCCccEECCCeE
Confidence 35789999987 57777776665
No 17
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=53.05 E-value=1.4 Score=33.25 Aligned_cols=32 Identities=25% Similarity=0.613 Sum_probs=27.9
Q ss_pred CCCCeEEEeccCCCccccCCCcccCCCCCccccc
Q psy12346 45 NTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFND 78 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~ 78 (107)
..+.|.++|..||.-| .+.-.|.|.-|.+|..
T Consensus 37 D~erGE~VCsdCGLVL--EEriID~GPEWRAFsn 68 (197)
T 3k1f_M 37 RFSEGDVVCALCGLVL--SDKLVDTRSEWRTFSN 68 (197)
T ss_dssp EGGGTEEEETTTCBBC--CCCCBCHHHHHHHHHC
T ss_pred eCCCCEEEEcCCCCCc--CCceeECCCCCcCcCC
Confidence 3578999999999988 6677899999999985
No 18
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=48.69 E-value=24 Score=26.56 Aligned_cols=57 Identities=11% Similarity=0.238 Sum_probs=37.5
Q ss_pred cCCHHHHHHHhhcCCCCCCCCCCCCCCCCeEEEeccCCCccccCCCcccCCCCCcccccccCCCCeEEeecCCCCceeeE
Q psy12346 20 RLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKDTSHGKLYGD 99 (107)
Q Consensus 20 ~Lt~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~pi~~~~v~~~~D~s~gm~RtE 99 (107)
.||++||+-|.+...+ ..-++.|+.|+.|+-... ...+....|..-|.+| -
T Consensus 118 GIT~eey~~L~e~Qg~-----------~~~~G~C~ICg~~~~~~~-----------------~k~lvVDHDH~TG~VR-G 168 (200)
T 3gox_A 118 KLSSTEKKKMDEIAPP-----------KGSVFTCPICEKRSIVGV-----------------TANLVHDHNHDTGWGR-E 168 (200)
T ss_dssp CCCHHHHHHHHTTCCC-----------TTCEEECTTTCCEEEBTT-----------------TBCEEEEECTTTCCEE-E
T ss_pred CCCHHHHHHHHHHccc-----------CCCCCcCcCCCCCCCcCc-----------------ccceeeecccCCCcEe-c
Confidence 5899999888765422 445789999999986321 1234445566667776 4
Q ss_pred EeCCCC
Q psy12346 100 LVSSHP 105 (107)
Q Consensus 100 V~C~~c 105 (107)
++|..|
T Consensus 169 lLC~~C 174 (200)
T 3gox_A 169 WICDSC 174 (200)
T ss_dssp EEEHHH
T ss_pred ccchhh
Confidence 666655
No 19
>1vq8_1 50S ribosomal protein L37E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.2 PDB: 1vq4_1* 1vq5_1* 1vq6_1* 1vq7_1* 1s72_1* 1vq9_1* 1vqk_1* 1vql_1* 1vqm_1* 1vqn_1* 1vqo_1* 1vqp_1* 1yhq_1* 1yi2_1* 1yij_1* 1yit_1* 1yj9_1* 1yjn_1* 1yjw_1* 2otj_1* ...
Probab=44.30 E-value=9 Score=23.54 Aligned_cols=28 Identities=21% Similarity=0.587 Sum_probs=24.6
Q ss_pred CeEEEeccCCCccccCCCcccCCCCC-cc
Q psy12346 48 SGTYTCIVCAQPLFSSQTKFDSGCGW-PA 75 (107)
Q Consensus 48 ~G~Y~C~~Cg~pLF~S~~KFdSg~GW-PS 75 (107)
.=.=.|..||..-|.-+.|.=+.||+ ||
T Consensus 15 ktH~~CrRCG~~syH~qK~~Ca~CGygpa 43 (57)
T 1vq8_1 15 TTHTKCRRCGEKSYHTKKKVCSSCGFGKS 43 (57)
T ss_dssp CCEEECTTTCSEEEETTTTEETTTCTTTC
T ss_pred CccccccccCChhhhccccccccccCCch
Confidence 33457999999999999999999999 87
No 20
>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A
Probab=43.94 E-value=10 Score=26.36 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=14.5
Q ss_pred CCCCeEEEecc--CCCccccCCCc
Q psy12346 45 NTESGTYTCIV--CAQPLFSSQTK 66 (107)
Q Consensus 45 ~~~~G~Y~C~~--Cg~pLF~S~~K 66 (107)
..+.|+|.|++ ++..+|...++
T Consensus 216 ~~DsG~Y~C~~~n~~~~~fg~gt~ 239 (253)
T 3uzq_A 216 ADDVATYFCQRSNEVPWTFGGGTK 239 (253)
T ss_dssp GGGCEEEEEEECSSSSCCBCCCEE
T ss_pred HHHCEEEEEEEccCCCcEECCCEE
Confidence 45789999988 44445554444
No 21
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=43.19 E-value=11 Score=25.45 Aligned_cols=15 Identities=7% Similarity=-0.197 Sum_probs=12.3
Q ss_pred CCceeeEEeCCCCCC
Q psy12346 93 HGKLYGDLVSSHPKR 107 (107)
Q Consensus 93 ~gm~RtEV~C~~c~~ 107 (107)
..+.||++.|.+||.
T Consensus 66 ~t~p~t~~~Cp~C~~ 80 (122)
T 1twf_I 66 PTLPRSDRECPKCHS 80 (122)
T ss_dssp TTSCCCCCCCTTTCC
T ss_pred ccccccCCCCCCCCC
Confidence 567789999999983
No 22
>4a18_A RPL37, ribosomal protein L37; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_A 4a1b_A 4a1d_A
Probab=41.50 E-value=9.3 Score=25.66 Aligned_cols=27 Identities=22% Similarity=0.561 Sum_probs=24.0
Q ss_pred eEEEeccCCCccccCCCcccCCCCCcc
Q psy12346 49 GTYTCIVCAQPLFSSQTKFDSGCGWPA 75 (107)
Q Consensus 49 G~Y~C~~Cg~pLF~S~~KFdSg~GWPS 75 (107)
=.-.|..||.--|.-+.|.-+.||+||
T Consensus 15 tHtlCrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 4a18_A 15 THTLCRRCGKATYHKQKLRCAACGYPD 41 (94)
T ss_dssp CEEECTTTCSEEEETTTTEESSSCGGG
T ss_pred ccceecCcCchhhhhccccccccCCcH
Confidence 356899999999999999999999995
No 23
>3j21_e 50S ribosomal protein L37E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=41.47 E-value=12 Score=23.39 Aligned_cols=25 Identities=16% Similarity=0.623 Sum_probs=22.6
Q ss_pred EEeccCCCccccCCCcccCCCCC-cc
Q psy12346 51 YTCIVCAQPLFSSQTKFDSGCGW-PA 75 (107)
Q Consensus 51 Y~C~~Cg~pLF~S~~KFdSg~GW-PS 75 (107)
=.|..||.--|.-+.|.-+.||+ ||
T Consensus 18 ~lCrRCG~~syH~qK~~Ca~CGygps 43 (62)
T 3j21_e 18 IRCRRCGRVSYNVKKGYCAACGFGRS 43 (62)
T ss_dssp CBCSSSCSBCEETTTTEETTTCTTTC
T ss_pred eeecccCcchhccccccccccCCchh
Confidence 46999999999999999999999 64
No 24
>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}
Probab=41.47 E-value=8.7 Score=26.77 Aligned_cols=11 Identities=27% Similarity=0.622 Sum_probs=9.2
Q ss_pred CCCCeEEEecc
Q psy12346 45 NTESGTYTCIV 55 (107)
Q Consensus 45 ~~~~G~Y~C~~ 55 (107)
..+.|+|.|++
T Consensus 218 ~~DsG~Y~C~~ 228 (259)
T 3omz_A 218 LEDSAKYFCAL 228 (259)
T ss_dssp GGGCSEEEEEE
T ss_pred hhHCEEEEEEE
Confidence 35789999987
No 25
>3iz5_l 60S ribosomal protein L37 (L37E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_l 3izc_l 3izs_l 3o58_d 3o5h_d 3u5e_j 3u5i_j 4b6a_j 1s1i_Y 3jyw_Y
Probab=40.53 E-value=9.3 Score=25.67 Aligned_cols=26 Identities=35% Similarity=0.726 Sum_probs=24.0
Q ss_pred EEEeccCCCccccCCCcccCCCCCcc
Q psy12346 50 TYTCIVCAQPLFSSQTKFDSGCGWPA 75 (107)
Q Consensus 50 ~Y~C~~Cg~pLF~S~~KFdSg~GWPS 75 (107)
.-.|..||.--|.-+.|.-+.||+||
T Consensus 16 HtlCrRCG~~syH~qK~~Ca~CGyps 41 (94)
T 3iz5_l 16 HTLCVRCGRRSFHLQKSTCSSCGYPA 41 (94)
T ss_dssp EEECTTTCSEEEEGGGTEETTTCSSC
T ss_pred cceecCcCchhhhcccccccccCCch
Confidence 56899999999999999999999996
No 26
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=40.15 E-value=14 Score=24.84 Aligned_cols=32 Identities=22% Similarity=0.421 Sum_probs=26.3
Q ss_pred CeEEEeccCCCccccCCCcccCCCCCcccccc
Q psy12346 48 SGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDV 79 (107)
Q Consensus 48 ~G~Y~C~~Cg~pLF~S~~KFdSg~GWPSF~~p 79 (107)
.---.|..||..-|.-+.+.-+.||+|++-.-
T Consensus 14 KtH~lCrRCG~~sfH~qK~~CgkCGYpa~k~R 45 (97)
T 2zkr_2 14 KTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKR 45 (97)
T ss_dssp CCEECCTTTCSSCEETTSCCBTTTCTTTSSCC
T ss_pred CCCCcCCCCCCccCcCccccCcccCCchHhcc
Confidence 44567999999999888888888999998653
No 27
>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*
Probab=37.71 E-value=11 Score=23.26 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|+.-
T Consensus 88 ~~DsG~Y~C~~~ 99 (115)
T 2atp_B 88 PEDSDFYFCATV 99 (115)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEeEc
Confidence 347999999874
No 28
>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1
Probab=37.05 E-value=12 Score=23.20 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 85 ~~DsG~Y~C~~~ 96 (116)
T 1tvd_A 85 TEDSATYYCAFT 96 (116)
T ss_dssp GGGCEEEEEEEE
T ss_pred hHHCEEEEEEEe
Confidence 347999999874
No 29
>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...
Probab=35.50 E-value=17 Score=22.21 Aligned_cols=13 Identities=23% Similarity=0.414 Sum_probs=9.9
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|+|.|++-.
T Consensus 82 ~~DsG~Y~C~~~~ 94 (109)
T 2q20_A 82 PEDIATYYCQQYD 94 (109)
T ss_dssp GGGCEEEEEEECS
T ss_pred hhhCEEEEEEEee
Confidence 3479999998743
No 30
>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1
Probab=35.14 E-value=21 Score=21.75 Aligned_cols=14 Identities=14% Similarity=0.283 Sum_probs=10.5
Q ss_pred CCCCCeEEEeccCC
Q psy12346 44 KNTESGTYTCIVCA 57 (107)
Q Consensus 44 ~~~~~G~Y~C~~Cg 57 (107)
...+.|+|.|++-.
T Consensus 79 ~~~DsG~Y~C~~~~ 92 (108)
T 1qfw_M 79 QAEDFADYHCGQTY 92 (108)
T ss_dssp CTTCCSEEEEEECS
T ss_pred ChhhCEEEEEEEcc
Confidence 34579999998753
No 31
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=34.47 E-value=61 Score=20.11 Aligned_cols=55 Identities=15% Similarity=0.298 Sum_probs=19.7
Q ss_pred CHHHHHHHhhcCCCCCCCCCCCCCCCCeEEEeccCCCc--cccCCCcccCCCCCccccc
Q psy12346 22 TPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQP--LFSSQTKFDSGCGWPAFND 78 (107)
Q Consensus 22 t~~qy~V~r~~gTE~pfsg~y~~~~~~G~Y~C~~Cg~p--LF~S~~KFdSg~GWPSF~~ 78 (107)
+-|+|+|--..| ...+|.-.....+-.|.|..||.. |=..+.-.=..||-=-.++
T Consensus 2 sre~~q~p~~~~--~~~~~g~~~~~~~v~Y~C~~CG~~~e~~~~d~irCp~CG~RILyK 58 (70)
T 1twf_L 2 SREGFQIPTNLD--AAAAGTSQARTATLKYICAECSSKLSLSRTDAVRCKDCGHRILLK 58 (70)
T ss_dssp -------------------------CCCCEECSSSCCEECCCTTSTTCCSSSCCCCCBC
T ss_pred CcccccCCCCcC--ccccccccCCCceEEEECCCCCCcceeCCCCCccCCCCCceEeEe
Confidence 456677755323 333333333346788999999998 4434444444455433333
No 32
>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A
Probab=34.23 E-value=15 Score=25.47 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=14.2
Q ss_pred CCCCeEEEeccCC--CccccCCCc
Q psy12346 45 NTESGTYTCIVCA--QPLFSSQTK 66 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg--~pLF~S~~K 66 (107)
..+.|+|.|++.. ..+|...+|
T Consensus 221 ~~D~G~Y~C~~~~~~~~~fg~gt~ 244 (257)
T 3gkz_A 221 AEDAASYFCHQWSSFPFTFGSGTK 244 (257)
T ss_dssp GGGCEEEEEEECSSSSCEECCCEE
T ss_pred hHHCEEEEEEEccCCceEEcCCEE
Confidence 3578999998753 445554444
No 33
>1sjv_A R9; camelids antibody, domain swapping, heavy chain antibody, AN; 1.94A {Lama glama} SCOP: b.1.1.1
Probab=34.20 E-value=22 Score=21.91 Aligned_cols=12 Identities=17% Similarity=0.495 Sum_probs=9.5
Q ss_pred CCCeEEEeccCC
Q psy12346 46 TESGTYTCIVCA 57 (107)
Q Consensus 46 ~~~G~Y~C~~Cg 57 (107)
.+.|+|.|++-.
T Consensus 88 ~DsG~Y~C~~~~ 99 (114)
T 1sjv_A 88 EDTAVYYCYTHY 99 (114)
T ss_dssp GGCSEEEEEECC
T ss_pred HHCEEEEEeEEc
Confidence 468999998754
No 34
>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...
Probab=34.02 E-value=16 Score=22.64 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=9.4
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 86 ~~DsG~Y~C~~~ 97 (114)
T 1eeq_A 86 AEDVAVYYCQQY 97 (114)
T ss_dssp GGGCEEEEEEEC
T ss_pred cccCEEEEEEEe
Confidence 347899999874
No 35
>1o4y_A Beta-agarase A; glycoside hydrolase family 16, agarose degradation, cleavage of beta-1, 4-D-galactose linkages; HET: SO4; 1.48A {Zobellia galactanivorans} SCOP: b.29.1.2 PDB: 1urx_A*
Probab=33.39 E-value=6.4 Score=29.74 Aligned_cols=18 Identities=17% Similarity=0.014 Sum_probs=14.6
Q ss_pred cccCCCcccCCCC-Cccccc
Q psy12346 60 LFSSQTKFDSGCG-WPAFND 78 (107)
Q Consensus 60 LF~S~~KFdSg~G-WPSF~~ 78 (107)
-|....|. +|.| ||+||-
T Consensus 105 ~vE~r~Kl-~g~G~wPAfWl 123 (288)
T 1o4y_A 105 YMEIKAKI-MDQVLANAFWT 123 (288)
T ss_dssp EEEEEEEC-CSSSSEEEEEE
T ss_pred EEEEEEEc-CCCccCcHHHh
Confidence 46777888 7888 999997
No 36
>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1
Probab=33.34 E-value=24 Score=21.38 Aligned_cols=14 Identities=14% Similarity=0.328 Sum_probs=10.7
Q ss_pred CCCCCeEEEeccCC
Q psy12346 44 KNTESGTYTCIVCA 57 (107)
Q Consensus 44 ~~~~~G~Y~C~~Cg 57 (107)
...+.|+|.|++-.
T Consensus 79 ~~~DsG~Y~C~~~n 92 (108)
T 1jhl_L 79 EPEDFAMYICQQHN 92 (108)
T ss_dssp CTTCCSEEEEEECS
T ss_pred CHHHCEEEEEEEcc
Confidence 34579999998754
No 37
>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A
Probab=33.06 E-value=19 Score=22.15 Aligned_cols=13 Identities=23% Similarity=0.713 Sum_probs=10.1
Q ss_pred CCCCCeEEEeccC
Q psy12346 44 KNTESGTYTCIVC 56 (107)
Q Consensus 44 ~~~~~G~Y~C~~C 56 (107)
...+.|+|.|++-
T Consensus 80 ~~~DsG~Y~C~~~ 92 (112)
T 2z35_A 80 QESDSAVYYCALS 92 (112)
T ss_dssp CSTTCSEEEEEEE
T ss_pred ChhhCEEEEEEEE
Confidence 3458999999874
No 38
>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A
Probab=32.94 E-value=13 Score=22.80 Aligned_cols=11 Identities=18% Similarity=0.525 Sum_probs=8.9
Q ss_pred CCCeEEEeccC
Q psy12346 46 TESGTYTCIVC 56 (107)
Q Consensus 46 ~~~G~Y~C~~C 56 (107)
.+.|+|.|++-
T Consensus 82 ~DsG~Y~C~~~ 92 (109)
T 1pew_A 82 EDEADYYCQSY 92 (109)
T ss_dssp GGCEEEEEEEE
T ss_pred hhCEEEEEEEE
Confidence 47899999863
No 39
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=31.65 E-value=30 Score=23.95 Aligned_cols=13 Identities=8% Similarity=-0.194 Sum_probs=0.0
Q ss_pred CceeeEEeCCCCC
Q psy12346 94 GKLYGDLVSSHPK 106 (107)
Q Consensus 94 gm~RtEV~C~~c~ 106 (107)
.+.|+++.|.+|+
T Consensus 87 tlp~t~~~CpkCg 99 (133)
T 3qt1_I 87 TLPRSDRECPKCH 99 (133)
T ss_dssp -------------
T ss_pred cCCcccCCCCCCC
Confidence 4678999999997
No 40
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=30.62 E-value=11 Score=29.49 Aligned_cols=12 Identities=25% Similarity=0.673 Sum_probs=0.0
Q ss_pred EeccCCCccccC
Q psy12346 52 TCIVCAQPLFSS 63 (107)
Q Consensus 52 ~C~~Cg~pLF~S 63 (107)
.|.+||.+|=..
T Consensus 6 ~C~gcG~~lq~~ 17 (368)
T 3h2y_A 6 KCIGCGVEIQTE 17 (368)
T ss_dssp ------------
T ss_pred eeCCCcceeEcC
Confidence 599999988443
No 41
>3azy_A Laminarinase; beta-jelly roll fold, glycosyl hydrolase family 16, laminari endo-1,3-beta-glucanase, hydrolase; 1.65A {Thermotoga maritima} PDB: 3azx_A 3azz_A* 3b00_A* 3b01_A 4dfs_A
Probab=30.54 E-value=8.1 Score=28.87 Aligned_cols=18 Identities=33% Similarity=0.669 Sum_probs=14.2
Q ss_pred ccCCCcccCCCC-Cccccc
Q psy12346 61 FSSQTKFDSGCG-WPAFND 78 (107)
Q Consensus 61 F~S~~KFdSg~G-WPSF~~ 78 (107)
|....|...|+| ||+||-
T Consensus 99 ~E~r~klp~g~G~wPAfWl 117 (272)
T 3azy_A 99 IEIRAKLPKGKGIWPALWM 117 (272)
T ss_dssp EEEEEECCCSTTEEEEEEE
T ss_pred EEEEEEcCCCCCCceeeec
Confidence 446678888887 999996
No 42
>2w39_A Putative laminarinase; hydrolase, white ROT fungus, glycosyl hydrolase, GH7, GH16, LAM16A, family 16, beta-glucan, basidiomycete; HET: NAG BGC LGC; 1.10A {Phanerochaete chrysosporium} PDB: 2cl2_A* 2w52_A* 2wlq_A* 2wne_A*
Probab=30.09 E-value=8 Score=29.92 Aligned_cols=19 Identities=32% Similarity=0.768 Sum_probs=16.0
Q ss_pred cccCC-CcccCCCC-Cccccc
Q psy12346 60 LFSSQ-TKFDSGCG-WPAFND 78 (107)
Q Consensus 60 LF~S~-~KFdSg~G-WPSF~~ 78 (107)
+|... +|+..|+| ||+||-
T Consensus 84 ~~e~r~ak~p~g~g~wPAfW~ 104 (298)
T 2w39_A 84 VAVFDVRHMPQGCGTWPAAWE 104 (298)
T ss_dssp EEEEEEEECCCSTTEEEEEEE
T ss_pred EEEEEEeccCCCCCCceeeEe
Confidence 67777 69999988 999997
No 43
>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N
Probab=29.78 E-value=14 Score=23.88 Aligned_cols=12 Identities=42% Similarity=0.670 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 75 ~~DsG~Y~C~~~ 86 (121)
T 2i24_N 75 VKDSGTYRCKPE 86 (121)
T ss_dssp GGGCEEEEEEEE
T ss_pred hhhCEEEEEEEe
Confidence 347999999873
No 44
>2rps_A Chemokine; peptide, immune system; NMR {Pseudaletia separata}
Probab=28.88 E-value=18 Score=19.76 Aligned_cols=8 Identities=50% Similarity=0.733 Sum_probs=6.2
Q ss_pred CCCCCCCC
Q psy12346 33 GTERPFSG 40 (107)
Q Consensus 33 gTE~pfsg 40 (107)
-|||||..
T Consensus 22 TTEpPFd~ 29 (32)
T 2rps_A 22 TTEPPFDP 29 (32)
T ss_dssp SCCCCCCC
T ss_pred CcCCCCCc
Confidence 48999963
No 45
>2vy0_A Endo-beta-1,3-glucanase; hydrolase, laminarin, endoglucanase, thermostable protein,; 2.16A {Pyrococcus furiosus}
Probab=28.00 E-value=9.1 Score=28.30 Aligned_cols=19 Identities=37% Similarity=0.767 Sum_probs=14.7
Q ss_pred cccCCCcccCCCC-Cccccc
Q psy12346 60 LFSSQTKFDSGCG-WPAFND 78 (107)
Q Consensus 60 LF~S~~KFdSg~G-WPSF~~ 78 (107)
.|....|+..|+| ||+||-
T Consensus 103 ~~E~r~klp~g~G~wpAfWl 122 (264)
T 2vy0_A 103 VVEARIKLPKGKGLWPAFWM 122 (264)
T ss_dssp EEEEEEECCCSTTEEEEEEE
T ss_pred EEEEEEEcCCCCCCCEeeec
Confidence 4666777777777 999997
No 46
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=27.55 E-value=13 Score=28.95 Aligned_cols=12 Identities=25% Similarity=0.603 Sum_probs=0.0
Q ss_pred EeccCCCccccC
Q psy12346 52 TCIVCAQPLFSS 63 (107)
Q Consensus 52 ~C~~Cg~pLF~S 63 (107)
.|.+||.+|=..
T Consensus 6 ~C~gcG~~lq~~ 17 (369)
T 3ec1_A 6 RCIGCGAAIQFE 17 (369)
T ss_dssp ------------
T ss_pred eeCCCCceeecC
Confidence 599999988443
No 47
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=27.50 E-value=75 Score=23.18 Aligned_cols=16 Identities=19% Similarity=0.293 Sum_probs=12.6
Q ss_pred HHHHHHHhhcCCCCCC
Q psy12346 23 PMQYHVTQEKGTERPF 38 (107)
Q Consensus 23 ~~qy~V~r~~gTE~pf 38 (107)
.+-|+-|+.+|-+=|-
T Consensus 130 ~~~Y~~Lk~~G~~FP~ 145 (226)
T 3zyq_A 130 QDTYQIMKVEGHVFPE 145 (226)
T ss_dssp HHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHhcCCCccc
Confidence 4678999999988763
No 48
>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A
Probab=27.48 E-value=19 Score=22.82 Aligned_cols=12 Identities=25% Similarity=0.667 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 82 ~~DsG~Y~C~~~ 93 (119)
T 2e27_L 82 PEDAATYYCLQY 93 (119)
T ss_dssp GGGCEEEEEEEC
T ss_pred hHHCEEEEEEEc
Confidence 347999999874
No 49
>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}
Probab=27.31 E-value=18 Score=25.37 Aligned_cols=19 Identities=16% Similarity=0.417 Sum_probs=12.4
Q ss_pred CCCeEEEecc--CCCccccCC
Q psy12346 46 TESGTYTCIV--CAQPLFSSQ 64 (107)
Q Consensus 46 ~~~G~Y~C~~--Cg~pLF~S~ 64 (107)
.+.|+|.|++ |+.-+|...
T Consensus 242 ~DsG~Y~C~a~~~~~~~fg~G 262 (268)
T 1x9q_A 242 EDTGIYYCTGASYGMEYLGQG 262 (268)
T ss_dssp GGCEEEEEEEEETTEEEECCC
T ss_pred HHCEEEEEEEccCCccEECCC
Confidence 4789999976 444444443
No 50
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=27.08 E-value=32 Score=20.15 Aligned_cols=18 Identities=39% Similarity=0.924 Sum_probs=12.8
Q ss_pred EEEeccCCCccccCCCcccCCCCCc
Q psy12346 50 TYTCIVCAQPLFSSQTKFDSGCGWP 74 (107)
Q Consensus 50 ~Y~C~~Cg~pLF~S~~KFdSg~GWP 74 (107)
.|.|..||. -||.-.|+|
T Consensus 3 ~y~C~~CGy-------vYd~~~Gdp 20 (52)
T 1e8j_A 3 IYVCTVCGY-------EYDPAKGDP 20 (52)
T ss_dssp CEECSSSCC-------CCCTTTCCT
T ss_pred cEEeCCCCe-------EEcCCcCCc
Confidence 599999994 356555665
No 51
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=26.93 E-value=32 Score=20.38 Aligned_cols=19 Identities=32% Similarity=0.912 Sum_probs=13.2
Q ss_pred EEEeccCCCccccCCCcccCCCCCcc
Q psy12346 50 TYTCIVCAQPLFSSQTKFDSGCGWPA 75 (107)
Q Consensus 50 ~Y~C~~Cg~pLF~S~~KFdSg~GWPS 75 (107)
.|.|..||. -||.--|+|-
T Consensus 3 ~y~C~~CGy-------vYd~~~Gdp~ 21 (55)
T 2v3b_B 3 KWQCVVCGF-------IYDEALGLPE 21 (55)
T ss_dssp EEEETTTCC-------EEETTTCBTT
T ss_pred cEEeCCCCe-------EECCCcCCcc
Confidence 699999994 3555556553
No 52
>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D
Probab=26.88 E-value=21 Score=24.68 Aligned_cols=12 Identities=17% Similarity=0.434 Sum_probs=9.6
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 217 ~~D~G~Y~C~~~ 228 (256)
T 3umt_A 217 SEDFVDYYCLQY 228 (256)
T ss_dssp GGGCSEEEEEEC
T ss_pred hhHCEEEEEEEe
Confidence 357899999874
No 53
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Probab=26.37 E-value=27 Score=21.70 Aligned_cols=12 Identities=33% Similarity=0.675 Sum_probs=9.6
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 75 ~~DsG~Y~C~~~ 86 (113)
T 1sq2_N 75 VEDGGTYRCGLG 86 (113)
T ss_dssp GGGCEEEEEEEC
T ss_pred hhhCEEEEEEEE
Confidence 347999999874
No 54
>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}
Probab=26.34 E-value=22 Score=24.62 Aligned_cols=12 Identities=25% Similarity=0.459 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 229 ~~DsG~Y~C~~~ 240 (256)
T 3juy_B 229 PEDFALYYCQVY 240 (256)
T ss_dssp GGGCSEEEEEEC
T ss_pred HhHCEEEEEEEe
Confidence 357899999874
No 55
>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}
Probab=26.28 E-value=23 Score=21.82 Aligned_cols=12 Identities=33% Similarity=0.830 Sum_probs=9.4
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 87 ~~DsG~Y~C~~~ 98 (120)
T 2yz1_A 87 PEDAGTYYCVKF 98 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEEEE
Confidence 347899999864
No 56
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=26.16 E-value=30 Score=18.59 Aligned_cols=16 Identities=31% Similarity=0.719 Sum_probs=11.7
Q ss_pred CCCeEEEeccCCCccc
Q psy12346 46 TESGTYTCIVCAQPLF 61 (107)
Q Consensus 46 ~~~G~Y~C~~Cg~pLF 61 (107)
+...+|.|..||+-+-
T Consensus 2 k~~~fY~C~~CGnive 17 (36)
T 1dxg_A 2 NEGDVYKCELCGQVVK 17 (36)
T ss_dssp CTTCEEECTTTCCEEE
T ss_pred CcccEEEcCCCCcEEE
Confidence 3456899999987654
No 57
>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B
Probab=26.14 E-value=28 Score=22.01 Aligned_cols=12 Identities=17% Similarity=0.517 Sum_probs=9.7
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|+.-
T Consensus 90 ~~DsG~Y~C~~~ 101 (121)
T 2xt1_B 90 PEDTAMYYCKAS 101 (121)
T ss_dssp GGGCEEEEEEET
T ss_pred HHHCEEEEEEEE
Confidence 347899999875
No 58
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=26.07 E-value=34 Score=20.00 Aligned_cols=19 Identities=26% Similarity=0.669 Sum_probs=13.5
Q ss_pred EEEeccCCCccccCCCcccCCCCCcc
Q psy12346 50 TYTCIVCAQPLFSSQTKFDSGCGWPA 75 (107)
Q Consensus 50 ~Y~C~~Cg~pLF~S~~KFdSg~GWPS 75 (107)
.|.|..||. -||.-.|+|-
T Consensus 2 ~~~C~~CGy-------vYd~~~Gdp~ 20 (52)
T 1yk4_A 2 KLSCKICGY-------IYDEDEGDPD 20 (52)
T ss_dssp EEEESSSSC-------EEETTTCBGG
T ss_pred cEEeCCCCe-------EECCCcCCcc
Confidence 699999994 4566666654
No 59
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}
Probab=25.84 E-value=23 Score=20.72 Aligned_cols=13 Identities=31% Similarity=0.759 Sum_probs=10.0
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|+|.|.+-.
T Consensus 80 ~~D~G~Y~C~~~n 92 (108)
T 3m45_A 80 LSDEGQYTCSLFT 92 (108)
T ss_dssp GGGCEEEEEEECS
T ss_pred hhHCeEEEEEEEc
Confidence 3578999998754
No 60
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=25.45 E-value=19 Score=20.98 Aligned_cols=18 Identities=22% Similarity=0.416 Sum_probs=12.5
Q ss_pred CCCeEEEeccCCCccccC
Q psy12346 46 TESGTYTCIVCAQPLFSS 63 (107)
Q Consensus 46 ~~~G~Y~C~~Cg~pLF~S 63 (107)
+.--.-+|-.||.|+--|
T Consensus 13 ~~~~YRvC~~CgkPi~ls 30 (44)
T 2lo3_A 13 KPIQYRVCEKCGKPLALT 30 (44)
T ss_dssp CCCCEEECTTTCCEEETT
T ss_pred ccccchhhcccCCcchHH
Confidence 334456899999997543
No 61
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Probab=25.40 E-value=23 Score=21.57 Aligned_cols=13 Identities=31% Similarity=0.828 Sum_probs=10.0
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|.|.|.+-.
T Consensus 83 ~~DsG~Y~C~a~n 95 (122)
T 3s35_X 83 RSDQGLYTCAASS 95 (122)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cccCEEEEEEEcc
Confidence 4578999998753
No 62
>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A
Probab=25.14 E-value=28 Score=21.35 Aligned_cols=12 Identities=17% Similarity=0.421 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 83 ~~DsG~Y~C~~~ 94 (111)
T 1i3g_L 83 SEDLADYFCQQY 94 (111)
T ss_dssp GGGCSEEEEEEC
T ss_pred HHHCEEEEEEEe
Confidence 347999999874
No 63
>2hyk_A Beta-1,3-glucanase; family 16, beta-jelly roll, bacterial endo-beta-1,3-glucanas hydrolase; 1.30A {Nocardiopsis SP} PDB: 3atg_A
Probab=24.85 E-value=11 Score=27.48 Aligned_cols=19 Identities=32% Similarity=0.629 Sum_probs=13.8
Q ss_pred cccCCCcccCCCC-Cccccc
Q psy12346 60 LFSSQTKFDSGCG-WPAFND 78 (107)
Q Consensus 60 LF~S~~KFdSg~G-WPSF~~ 78 (107)
.|....|+..|+| ||+||-
T Consensus 89 ~~E~r~klp~g~G~wpAfWl 108 (245)
T 2hyk_A 89 RVEASIQIPRGQGIWPAFWM 108 (245)
T ss_dssp EEEEEEECCCSTTEEEEEEE
T ss_pred eEEEEEEcCCCCcCcEeeec
Confidence 3556667777776 999986
No 64
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}
Probab=24.80 E-value=32 Score=20.18 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=9.8
Q ss_pred CCCCCeEEEecc
Q psy12346 44 KNTESGTYTCIV 55 (107)
Q Consensus 44 ~~~~~G~Y~C~~ 55 (107)
...+.|.|.|.+
T Consensus 71 ~~~D~G~Y~C~a 82 (95)
T 2k1m_A 71 GPADQGSYAVIA 82 (95)
T ss_dssp CTTCCSEEEEEE
T ss_pred CcccCEEEEEEE
Confidence 346799999988
No 65
>3fac_A Putative uncharacterized protein; complete proteome, structural genomics, PSI-2, protein structure initiative; 2.50A {Rhodobacter sphaeroides 2}
Probab=24.68 E-value=23 Score=23.09 Aligned_cols=18 Identities=11% Similarity=0.329 Sum_probs=14.5
Q ss_pred CCeEEEeccCCCccccCC
Q psy12346 47 ESGTYTCIVCAQPLFSSQ 64 (107)
Q Consensus 47 ~~G~Y~C~~Cg~pLF~S~ 64 (107)
..-.|.|..||.+||...
T Consensus 64 ~~~r~FC~~CGs~l~~~~ 81 (118)
T 3fac_A 64 TAKHWFCRTCGIYTHHQR 81 (118)
T ss_dssp CSEEEEETTTCCEEEEEC
T ss_pred CEeeEECCCCCccccCcc
Confidence 345789999999999753
No 66
>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A
Probab=24.60 E-value=25 Score=21.40 Aligned_cols=12 Identities=25% Similarity=0.775 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 80 ~~DsG~Y~C~~~ 91 (107)
T 1i8k_A 80 SEDVGDYYCLQS 91 (107)
T ss_dssp GGGCEEEEEEEC
T ss_pred HHHCEEEEEEEe
Confidence 347999999874
No 67
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.23 E-value=38 Score=19.98 Aligned_cols=14 Identities=29% Similarity=0.572 Sum_probs=10.9
Q ss_pred CCCCCeEEEeccCC
Q psy12346 44 KNTESGTYTCIVCA 57 (107)
Q Consensus 44 ~~~~~G~Y~C~~Cg 57 (107)
...+.|.|.|.+-+
T Consensus 73 ~~~D~G~Y~C~a~n 86 (104)
T 2e6p_A 73 KVQDSGEFECRTEG 86 (104)
T ss_dssp CTTTCEEEEEECSS
T ss_pred ChhhCEEEEEEECC
Confidence 34578999998855
No 68
>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H
Probab=24.15 E-value=28 Score=24.41 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=13.4
Q ss_pred CCCeEEEeccCC--CccccCCCc
Q psy12346 46 TESGTYTCIVCA--QPLFSSQTK 66 (107)
Q Consensus 46 ~~~G~Y~C~~Cg--~pLF~S~~K 66 (107)
.+.|+|.|++-. ..+|...++
T Consensus 206 ~DsG~Y~C~a~~~~~~~fg~gt~ 228 (256)
T 1nqb_A 206 EDLGVYYCFQGSHVPYTFGGGTK 228 (256)
T ss_dssp GGCEEEEEEECSSSSCEECCCEE
T ss_pred HHCEEEEEEEccCCceEECCCEE
Confidence 468999997743 444555444
No 69
>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A
Probab=23.80 E-value=26 Score=21.36 Aligned_cols=13 Identities=23% Similarity=0.452 Sum_probs=9.9
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|+|.|++-.
T Consensus 84 ~~DsG~Y~C~~~~ 96 (111)
T 1j05_L 84 ADDVATYYCQQTN 96 (111)
T ss_dssp GGGCEEEEEEECS
T ss_pred cccCEEEEEEEec
Confidence 3479999998753
No 70
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B
Probab=23.51 E-value=27 Score=20.73 Aligned_cols=12 Identities=42% Similarity=0.803 Sum_probs=9.4
Q ss_pred CCCeEEEeccCC
Q psy12346 46 TESGTYTCIVCA 57 (107)
Q Consensus 46 ~~~G~Y~C~~Cg 57 (107)
.+.|+|.|.+-.
T Consensus 99 ~D~G~Y~C~v~~ 110 (126)
T 1eaj_A 99 SDIGTYQCKVKK 110 (126)
T ss_dssp GGCEEEEEEEEE
T ss_pred HHCeEEEEEEEc
Confidence 468999998743
No 71
>1x6m_A GFA, glutathione-dependent formaldehyde-activating ENZ; Zn-enzyme, 3_10 helix, lyase; 2.35A {Paracoccus denitrificans} SCOP: b.88.1.4 PDB: 1xa8_A*
Probab=23.45 E-value=34 Score=24.50 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=15.4
Q ss_pred CCCeEEEeccCCCccccCCC
Q psy12346 46 TESGTYTCIVCAQPLFSSQT 65 (107)
Q Consensus 46 ~~~G~Y~C~~Cg~pLF~S~~ 65 (107)
...-.|.|..||.+||....
T Consensus 94 ~~~~r~FC~~CGs~l~~~~~ 113 (196)
T 1x6m_A 94 APIQRHRCRDCGVHMYGRIE 113 (196)
T ss_dssp SSEEEEEETTTCCEEEEEEC
T ss_pred CCeeeEECCCCCCcCCcccc
Confidence 34567899999999997543
No 72
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.15 E-value=37 Score=20.00 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=10.6
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|.|.|.+-.
T Consensus 72 ~~D~G~Y~C~a~n 84 (103)
T 2edf_A 72 LKDAGEYTCEVEA 84 (103)
T ss_dssp TTTCSEEEEECSS
T ss_pred cccCEEEEEEEcc
Confidence 4578999998866
No 73
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Probab=23.12 E-value=28 Score=20.18 Aligned_cols=12 Identities=33% Similarity=0.789 Sum_probs=9.4
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|.|.|.+-
T Consensus 85 ~~D~G~Y~C~a~ 96 (112)
T 3so5_A 85 FTSEGXYQCVIS 96 (112)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccCCeEEEEEE
Confidence 357899999764
No 74
>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}
Probab=23.06 E-value=25 Score=22.42 Aligned_cols=11 Identities=18% Similarity=0.558 Sum_probs=8.9
Q ss_pred CCCeEEEeccC
Q psy12346 46 TESGTYTCIVC 56 (107)
Q Consensus 46 ~~~G~Y~C~~C 56 (107)
.+.|+|.|+.-
T Consensus 89 ~Dsg~Y~C~~~ 99 (125)
T 3r8b_B 89 SQTSVYFCASG 99 (125)
T ss_dssp GGCEEEEEEEE
T ss_pred hhCEEEEEEEc
Confidence 47899999863
No 75
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4
Probab=23.06 E-value=28 Score=20.19 Aligned_cols=13 Identities=8% Similarity=0.066 Sum_probs=9.9
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|.|.|.+-.
T Consensus 71 ~~D~G~Y~C~a~N 83 (99)
T 1g1c_A 71 GEDSASIMVKAIN 83 (99)
T ss_dssp GGGCEEEEEEEEE
T ss_pred cCCCEEEEEEEEE
Confidence 3468999998754
No 76
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}
Probab=23.05 E-value=28 Score=20.62 Aligned_cols=12 Identities=33% Similarity=0.899 Sum_probs=9.4
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|.+-
T Consensus 88 ~~D~G~Y~C~v~ 99 (118)
T 3udw_C 88 VEDEGNYTCLFV 99 (118)
T ss_dssp GGGCEEEEEEEE
T ss_pred hHHCeEEEEEEE
Confidence 357999999864
No 77
>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B
Probab=23.04 E-value=28 Score=21.33 Aligned_cols=12 Identities=42% Similarity=0.675 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 80 ~~DsG~Y~C~~~ 91 (113)
T 1h5b_A 80 LEDSGTYFCAAE 91 (113)
T ss_dssp GGGCEEEEEEEE
T ss_pred hhhCEEEEEEEe
Confidence 347999999874
No 78
>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*
Probab=22.98 E-value=34 Score=21.20 Aligned_cols=12 Identities=17% Similarity=0.498 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|+.-
T Consensus 88 ~~Dsg~Y~C~~~ 99 (120)
T 3b9v_A 88 AEDTAVYYCARW 99 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEEEE
Confidence 347899999874
No 79
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Probab=22.95 E-value=36 Score=20.26 Aligned_cols=12 Identities=25% Similarity=0.891 Sum_probs=9.7
Q ss_pred CCCCCeEEEecc
Q psy12346 44 KNTESGTYTCIV 55 (107)
Q Consensus 44 ~~~~~G~Y~C~~ 55 (107)
...+.|.|.|.+
T Consensus 70 ~~~D~G~Y~C~a 81 (108)
T 2dm7_A 70 SVADAGEYSCMC 81 (108)
T ss_dssp CTTTCSEEEEEE
T ss_pred CcccCEEEEEEE
Confidence 345789999998
No 80
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.91 E-value=37 Score=19.80 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=10.8
Q ss_pred CCCCCeEEEeccCC
Q psy12346 44 KNTESGTYTCIVCA 57 (107)
Q Consensus 44 ~~~~~G~Y~C~~Cg 57 (107)
...+.|.|.|.+-.
T Consensus 70 ~~~d~G~Y~C~a~n 83 (100)
T 2edj_A 70 RISDTGTYTCVATS 83 (100)
T ss_dssp CTTTCCEEEEEEEC
T ss_pred CcccCEEEEEEEEc
Confidence 34578999998764
No 81
>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}
Probab=22.73 E-value=28 Score=20.96 Aligned_cols=12 Identities=42% Similarity=0.769 Sum_probs=9.6
Q ss_pred CCCeEEEeccCC
Q psy12346 46 TESGTYTCIVCA 57 (107)
Q Consensus 46 ~~~G~Y~C~~Cg 57 (107)
.+.|+|.|++-.
T Consensus 83 ~DsG~Y~C~v~~ 94 (116)
T 2or8_A 83 SDSGLYCCRVEI 94 (116)
T ss_dssp GGCEEEEEEECC
T ss_pred ccCEEEEEEEEc
Confidence 478999998844
No 82
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=22.66 E-value=41 Score=19.42 Aligned_cols=14 Identities=0% Similarity=-0.187 Sum_probs=10.9
Q ss_pred CceeeEEeCCCCCC
Q psy12346 94 GKLYGDLVSSHPKR 107 (107)
Q Consensus 94 gm~RtEV~C~~c~~ 107 (107)
.+.++++.|.+||.
T Consensus 10 ~~~~~~~~Cp~Cg~ 23 (57)
T 1qyp_A 10 TLPTTKITCPKCGN 23 (57)
T ss_dssp SSCEEECCCTTTCC
T ss_pred cCCceEeECCCCCC
Confidence 45678899999973
No 83
>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}
Probab=22.47 E-value=29 Score=20.22 Aligned_cols=13 Identities=31% Similarity=0.728 Sum_probs=9.9
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|.|.|.+-.
T Consensus 60 ~~D~G~Y~C~a~n 72 (95)
T 4hwu_A 60 PRDSGLYACTAAR 72 (95)
T ss_dssp GGGCEEEEEEEEC
T ss_pred cccCEEEEEEEcc
Confidence 3468999998754
No 84
>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C
Probab=22.47 E-value=29 Score=21.31 Aligned_cols=12 Identities=25% Similarity=0.576 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 85 ~~DsG~Y~C~~~ 96 (113)
T 1dlf_L 85 AEDLGVYFCSQS 96 (113)
T ss_dssp GGGCEEEEEEEC
T ss_pred hHHCEEEEEEEe
Confidence 347899999874
No 85
>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A
Probab=22.42 E-value=29 Score=21.93 Aligned_cols=11 Identities=36% Similarity=0.954 Sum_probs=8.8
Q ss_pred CCCeEEEeccC
Q psy12346 46 TESGTYTCIVC 56 (107)
Q Consensus 46 ~~~G~Y~C~~C 56 (107)
.+.|+|.|++-
T Consensus 84 ~DsG~Y~C~~~ 94 (127)
T 2jju_A 84 ADAGTYYCVKF 94 (127)
T ss_dssp GGCEEEEEEEE
T ss_pred HHCEEEEEEEE
Confidence 46899999863
No 86
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Probab=22.33 E-value=30 Score=20.26 Aligned_cols=14 Identities=29% Similarity=0.660 Sum_probs=10.4
Q ss_pred CCCCeEEEeccCCC
Q psy12346 45 NTESGTYTCIVCAQ 58 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg~ 58 (107)
..+.|.|.|.+-..
T Consensus 71 ~~D~G~Y~C~a~n~ 84 (98)
T 1gl4_B 71 PSDAGTYVCTGSNM 84 (98)
T ss_dssp GGGCEEEEEEEECS
T ss_pred hhhCEEEEEEecCC
Confidence 34689999987543
No 87
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.32 E-value=48 Score=19.75 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=11.2
Q ss_pred CCCCCeEEEeccCC
Q psy12346 44 KNTESGTYTCIVCA 57 (107)
Q Consensus 44 ~~~~~G~Y~C~~Cg 57 (107)
...+.|.|.|.+..
T Consensus 76 ~~~D~G~Y~C~a~n 89 (113)
T 2cpc_A 76 QLEDSGEYLCEIDD 89 (113)
T ss_dssp CTTTCEEEEEESSS
T ss_pred CcccCEEEEEEEec
Confidence 34679999998876
No 88
>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.20 E-value=39 Score=19.76 Aligned_cols=15 Identities=27% Similarity=0.731 Sum_probs=11.2
Q ss_pred CCCCCeEEEeccCCC
Q psy12346 44 KNTESGTYTCIVCAQ 58 (107)
Q Consensus 44 ~~~~~G~Y~C~~Cg~ 58 (107)
...+.|.|.|.+-..
T Consensus 65 ~~~d~G~Y~C~a~n~ 79 (96)
T 2ens_A 65 GPQDQGTYSCVATHS 79 (96)
T ss_dssp CTTTCEEEECEECCS
T ss_pred CcccCEEEEEEEEeC
Confidence 345789999988653
No 89
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=22.17 E-value=40 Score=20.04 Aligned_cols=19 Identities=42% Similarity=0.838 Sum_probs=12.9
Q ss_pred EEEeccCCCccccCCCcccCCCCCcc
Q psy12346 50 TYTCIVCAQPLFSSQTKFDSGCGWPA 75 (107)
Q Consensus 50 ~Y~C~~Cg~pLF~S~~KFdSg~GWPS 75 (107)
.|.|..||. -||.--|+|.
T Consensus 3 ~y~C~vCGy-------vYd~~~Gdp~ 21 (54)
T 4rxn_A 3 KYTCTVCGY-------IYDPEDGDPD 21 (54)
T ss_dssp CEEETTTCC-------EECTTTCBGG
T ss_pred ceECCCCCe-------EECCCcCCcc
Confidence 599999993 4555555553
No 90
>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...
Probab=22.15 E-value=40 Score=21.14 Aligned_cols=12 Identities=25% Similarity=0.498 Sum_probs=9.6
Q ss_pred CCCeEEEeccCC
Q psy12346 46 TESGTYTCIVCA 57 (107)
Q Consensus 46 ~~~G~Y~C~~Cg 57 (107)
.+.|+|.|++-.
T Consensus 81 ~DsG~Y~C~~~~ 92 (120)
T 1mqk_L 81 EDFGSYYCQHHY 92 (120)
T ss_dssp GGCEEEEEEECS
T ss_pred HHCEEEEEEEEe
Confidence 479999998753
No 91
>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}
Probab=22.15 E-value=30 Score=21.00 Aligned_cols=12 Identities=42% Similarity=0.692 Sum_probs=9.6
Q ss_pred CCCeEEEeccCC
Q psy12346 46 TESGTYTCIVCA 57 (107)
Q Consensus 46 ~~~G~Y~C~~Cg 57 (107)
.+.|+|.|++-.
T Consensus 78 ~DsG~Y~C~~~~ 89 (110)
T 2q87_A 78 EDAGTYWCGVDT 89 (110)
T ss_dssp GGCEEEEEEEEC
T ss_pred HHCEEEEEEEec
Confidence 478999998743
No 92
>3bj9_1 Immunoglobulin IOTA chain, immunoglobulin lambda- like polypeptide 1; immunoglobulin domain, beta sheet, polymorphism, immune system; 2.00A {Homo sapiens} PDB: 2h3n_A
Probab=22.15 E-value=29 Score=21.23 Aligned_cols=12 Identities=17% Similarity=0.501 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 86 ~~DsG~Y~C~~~ 97 (116)
T 3bj9_1 86 PEDEAMYYCAMG 97 (116)
T ss_dssp GGGCEEEEEEEC
T ss_pred hhHCEEEEEEEe
Confidence 347999999874
No 93
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Probab=22.09 E-value=39 Score=19.90 Aligned_cols=11 Identities=18% Similarity=0.281 Sum_probs=9.4
Q ss_pred CCCCeEEEecc
Q psy12346 45 NTESGTYTCIV 55 (107)
Q Consensus 45 ~~~~G~Y~C~~ 55 (107)
..+.|.|.|.+
T Consensus 72 ~~D~G~Y~C~a 82 (100)
T 2yuv_A 72 MTDDSEYYVTA 82 (100)
T ss_dssp TTTCCEEEEEE
T ss_pred cCcCEEEEEEE
Confidence 46789999988
No 94
>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A
Probab=22.05 E-value=30 Score=21.24 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.4
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 85 ~~DsG~Y~C~~~ 96 (111)
T 2qhl_A 85 EDDGGEYFCGEV 96 (111)
T ss_dssp GGGCEEEEEEEE
T ss_pred hhHCEEEEEEEc
Confidence 347899999874
No 95
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A
Probab=21.94 E-value=30 Score=20.05 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=10.0
Q ss_pred CCCeEEEeccCCC
Q psy12346 46 TESGTYTCIVCAQ 58 (107)
Q Consensus 46 ~~~G~Y~C~~Cg~ 58 (107)
.+.|.|.|.+...
T Consensus 68 ~D~G~Y~C~a~N~ 80 (93)
T 1wit_A 68 ADSGNYKLKVKNE 80 (93)
T ss_dssp GGCEEEEEEEEET
T ss_pred hcCEEEEEEEEcC
Confidence 4689999987643
No 96
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}
Probab=21.90 E-value=31 Score=20.25 Aligned_cols=12 Identities=33% Similarity=0.916 Sum_probs=9.3
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|.|.|.+-
T Consensus 69 ~~D~G~Y~C~a~ 80 (95)
T 2ckn_A 69 PADSGLYACVTS 80 (95)
T ss_dssp GGGSEEEEEEEE
T ss_pred hHHCEEEEEEec
Confidence 346899999864
No 97
>3iy0_H FAB 14, heavy domain; cryoem, neutralizing antibody, parvovirus, canine, feline, FAB footprint, immune system; 12.50A {Mus musculus}
Probab=21.80 E-value=31 Score=21.73 Aligned_cols=12 Identities=33% Similarity=0.678 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|+.-
T Consensus 88 ~~Dsg~Y~C~~~ 99 (120)
T 3iy0_H 88 SEDSGVYFCARR 99 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred hHHCEEEEEEEE
Confidence 357899999874
No 98
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=21.64 E-value=21 Score=24.44 Aligned_cols=15 Identities=7% Similarity=-0.068 Sum_probs=10.0
Q ss_pred CCceeeEEeCCCCCC
Q psy12346 93 HGKLYGDLVSSHPKR 107 (107)
Q Consensus 93 ~gm~RtEV~C~~c~~ 107 (107)
+.+.|-.-||.+||+
T Consensus 29 Fs~~~RkHHCR~CG~ 43 (120)
T 1y02_A 29 FANTARKQTCLDCKK 43 (120)
T ss_dssp CSSGGGCEECTTTCC
T ss_pred cccccccccCCCCCC
Confidence 455555678888874
No 99
>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}
Probab=21.58 E-value=37 Score=20.51 Aligned_cols=13 Identities=23% Similarity=0.767 Sum_probs=10.3
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|.|.|.+-.
T Consensus 81 ~~D~G~Y~C~a~N 93 (117)
T 2v9t_A 81 RPDEGVYVCVARN 93 (117)
T ss_dssp CSSCEEEEEEEEE
T ss_pred cCcCEEEEEEEEe
Confidence 4578999998754
No 100
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing, ATP-binding, calcium, calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Probab=21.54 E-value=31 Score=19.77 Aligned_cols=12 Identities=25% Similarity=0.446 Sum_probs=9.4
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|.|.|.+-
T Consensus 72 ~~D~G~Y~C~a~ 83 (100)
T 3irg_A 72 KQDGGLYTLSLG 83 (100)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccCEEEEEEEE
Confidence 457899999764
No 101
>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}
Probab=21.54 E-value=24 Score=21.53 Aligned_cols=12 Identities=42% Similarity=0.794 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 75 ~~DsG~Y~C~~~ 86 (108)
T 2coq_A 75 VEDSGTYKCKAY 86 (108)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccCEEEEEEEE
Confidence 357999999874
No 102
>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}
Probab=21.52 E-value=31 Score=20.95 Aligned_cols=12 Identities=25% Similarity=0.689 Sum_probs=9.5
Q ss_pred CCCeEEEeccCC
Q psy12346 46 TESGTYTCIVCA 57 (107)
Q Consensus 46 ~~~G~Y~C~~Cg 57 (107)
.+.|+|.|++=.
T Consensus 84 ~DsG~Y~C~v~~ 95 (113)
T 1zox_A 84 SDAGIYWCGITK 95 (113)
T ss_dssp GGCEEEEEEECC
T ss_pred HHCEEEEEeeEc
Confidence 478999998743
No 103
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A
Probab=21.33 E-value=31 Score=20.80 Aligned_cols=14 Identities=29% Similarity=0.653 Sum_probs=10.4
Q ss_pred CCCCeEEEeccCCC
Q psy12346 45 NTESGTYTCIVCAQ 58 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg~ 58 (107)
..+.|.|.|.+-..
T Consensus 81 ~~D~G~Y~C~a~N~ 94 (108)
T 3cx2_A 81 PAFTGSYRCEVSTK 94 (108)
T ss_dssp GGGCEEEEEEEECS
T ss_pred CccCEEEEEEEecC
Confidence 34789999987543
No 104
>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.32 E-value=43 Score=21.12 Aligned_cols=12 Identities=33% Similarity=0.850 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 88 ~~DsG~Y~C~~~ 99 (136)
T 2d9c_A 88 PADAGTYYCVKF 99 (136)
T ss_dssp TTTCEEEEEEEE
T ss_pred HHHCEEEEEEEE
Confidence 457999999863
No 105
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}
Probab=21.31 E-value=32 Score=19.97 Aligned_cols=12 Identities=25% Similarity=0.902 Sum_probs=9.3
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|.|.|.+-
T Consensus 71 ~~D~G~Y~C~a~ 82 (100)
T 2kdg_A 71 ASDAGAYACVAK 82 (100)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccCEEEEEEEE
Confidence 357899999764
No 106
>3dmm_D T-cell surface glycoprotein CD8 beta chain; T cell CO-receptor CD8AB MHC complex, immune response, membrane, MHC I, phosphoprotein, transmembrane; 2.60A {Mus musculus}
Probab=21.25 E-value=32 Score=22.90 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|+.-
T Consensus 91 ~~Dsg~Y~C~~~ 102 (150)
T 3dmm_D 91 PEDSDFYFCATV 102 (150)
T ss_dssp GGGCEEEEEEEE
T ss_pred hhhCEEEEEEEe
Confidence 347899999874
No 107
>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A
Probab=21.17 E-value=32 Score=21.16 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 75 ~~DsG~Y~C~~~ 86 (111)
T 2ywz_A 75 VEDSGTYKCQAD 86 (111)
T ss_dssp GGGCEEEEEEEE
T ss_pred hhcCEEEEEEEE
Confidence 347999999874
No 108
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}
Probab=21.11 E-value=32 Score=19.89 Aligned_cols=12 Identities=33% Similarity=0.755 Sum_probs=9.3
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|.|.|.+-
T Consensus 71 ~~D~G~Y~C~a~ 82 (99)
T 1u2h_A 71 RGDAGFYTCKAV 82 (99)
T ss_dssp GGGCEEEEEEEE
T ss_pred cCCCEEEEEEEE
Confidence 346899999874
No 109
>4fk7_A Toxin certhrax, putative ADP-ribosyltransferase certhrax; mono-ADP-ribosyltransferase; HET: P34; 1.78A {Bacillus cereus}
Probab=21.10 E-value=55 Score=23.18 Aligned_cols=18 Identities=17% Similarity=0.154 Sum_probs=14.1
Q ss_pred HHHHhcCCHHHHHHHhhc
Q psy12346 15 EELKKRLTPMQYHVTQEK 32 (107)
Q Consensus 15 ~ewk~~Lt~~qy~V~r~~ 32 (107)
..|++.||++|..-++.=
T Consensus 22 ~~w~~~Lt~~E~~AI~~Y 39 (229)
T 4fk7_A 22 KNWKENLTISEKDIITGY 39 (229)
T ss_dssp HHHHHTSCHHHHHHHHHH
T ss_pred HHHHhhCCHHHHHHHHHH
Confidence 468899999998766653
No 110
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=21.05 E-value=45 Score=20.05 Aligned_cols=13 Identities=31% Similarity=0.485 Sum_probs=10.2
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|.|.|.+-.
T Consensus 72 ~~D~G~Y~C~a~N 84 (114)
T 2cqv_A 72 QEHCGCYTLLVEN 84 (114)
T ss_dssp TTTCEEEEEEEEC
T ss_pred hhcCEEEEEEEEE
Confidence 4579999998754
No 111
>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1
Probab=21.01 E-value=35 Score=23.13 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=9.4
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|.|.|.+-
T Consensus 214 ~~D~G~Y~C~a~ 225 (247)
T 2ghw_B 214 PEDFAVYYCQQR 225 (247)
T ss_dssp GGGCEEEEEEEC
T ss_pred HHHCEEEEEEEc
Confidence 346899999774
No 112
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.97 E-value=46 Score=19.66 Aligned_cols=14 Identities=29% Similarity=0.771 Sum_probs=10.5
Q ss_pred CCCCCeEEEeccCC
Q psy12346 44 KNTESGTYTCIVCA 57 (107)
Q Consensus 44 ~~~~~G~Y~C~~Cg 57 (107)
.....|.|.|.+-.
T Consensus 62 ~~~D~G~Y~C~a~n 75 (99)
T 2cr3_A 62 VPADSGLYACVTSS 75 (99)
T ss_dssp CTTTCEEEEEEEEE
T ss_pred CHHHCEEEEEEEEe
Confidence 34578999998754
No 113
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Probab=20.78 E-value=33 Score=19.96 Aligned_cols=13 Identities=38% Similarity=0.910 Sum_probs=9.8
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|.|.|.+-.
T Consensus 74 ~~D~G~Y~C~a~N 86 (100)
T 3caf_A 74 PSDKGNYTCVVEN 86 (100)
T ss_dssp GGGCEEEEEEEEE
T ss_pred cCCCEEEEEEEEe
Confidence 3468999998753
No 114
>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A
Probab=20.74 E-value=33 Score=20.71 Aligned_cols=11 Identities=36% Similarity=0.495 Sum_probs=9.1
Q ss_pred CCCeEEEeccC
Q psy12346 46 TESGTYTCIVC 56 (107)
Q Consensus 46 ~~~G~Y~C~~C 56 (107)
.+.|+|.|++-
T Consensus 83 ~DsG~Y~C~v~ 93 (110)
T 2ptt_A 83 EDKGTYYMRVL 93 (110)
T ss_dssp GGCEEEEEEEE
T ss_pred ccCeEEEEEEE
Confidence 47899999873
No 115
>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C
Probab=20.70 E-value=33 Score=21.10 Aligned_cols=12 Identities=17% Similarity=0.470 Sum_probs=9.4
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|+.-
T Consensus 88 ~~Dsg~Y~C~~~ 99 (117)
T 2yc1_A 88 AEDTAVYYCARG 99 (117)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEEEE
Confidence 347899999864
No 116
>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*
Probab=20.62 E-value=41 Score=21.78 Aligned_cols=13 Identities=23% Similarity=0.496 Sum_probs=10.2
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|+|.|++-.
T Consensus 86 ~~DsG~Y~C~a~n 98 (133)
T 3khq_A 86 YEDNGIYFCKQKC 98 (133)
T ss_dssp GGGCEEEEEEESS
T ss_pred hHHCEEEEEEEEe
Confidence 4578999998754
No 117
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.61 E-value=37 Score=19.74 Aligned_cols=13 Identities=38% Similarity=0.820 Sum_probs=10.0
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|.|.|.+-.
T Consensus 73 ~~D~G~Y~C~a~N 85 (99)
T 2yr3_A 73 PEDHGTYTCLAEN 85 (99)
T ss_dssp TTCCBCEEEEEEC
T ss_pred hhhCEEEEEEEEE
Confidence 4578999998754
No 118
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}
Probab=20.54 E-value=47 Score=19.96 Aligned_cols=12 Identities=25% Similarity=0.797 Sum_probs=9.8
Q ss_pred CCCCCeEEEecc
Q psy12346 44 KNTESGTYTCIV 55 (107)
Q Consensus 44 ~~~~~G~Y~C~~ 55 (107)
...+.|.|.|.+
T Consensus 81 ~~~D~G~Y~C~a 92 (113)
T 2edh_A 81 VAEDAGEYLCMC 92 (113)
T ss_dssp CSTTCEEEEEEE
T ss_pred ChhhCEEEEEEe
Confidence 346799999988
No 119
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}
Probab=20.53 E-value=34 Score=19.73 Aligned_cols=12 Identities=50% Similarity=0.944 Sum_probs=9.3
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|.|.|.+-
T Consensus 71 ~~d~G~Y~C~a~ 82 (99)
T 3puc_A 71 TSDSGLYTCTVK 82 (99)
T ss_dssp GGGCEEEEEEEE
T ss_pred cccCEEEEEEEE
Confidence 357899999764
No 120
>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...
Probab=20.45 E-value=33 Score=21.16 Aligned_cols=12 Identities=17% Similarity=0.462 Sum_probs=9.6
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|+.-
T Consensus 87 ~~Dsg~Y~C~~~ 98 (116)
T 1a2y_B 87 TDDTARYYCARE 98 (116)
T ss_dssp GGGCEEEEEEEE
T ss_pred HHHCEEEEEEEe
Confidence 347999999875
No 121
>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*
Probab=20.43 E-value=33 Score=21.30 Aligned_cols=12 Identities=17% Similarity=0.564 Sum_probs=9.4
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|++-
T Consensus 82 ~~DsG~Y~C~~~ 93 (120)
T 1oaq_L 82 TEDEAIYFCALW 93 (120)
T ss_dssp GGGCEEEEEEEE
T ss_pred hhhCeEEEEEEc
Confidence 347999999874
No 122
>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}
Probab=20.38 E-value=48 Score=19.71 Aligned_cols=12 Identities=25% Similarity=0.753 Sum_probs=9.5
Q ss_pred CCCCCeEEEecc
Q psy12346 44 KNTESGTYTCIV 55 (107)
Q Consensus 44 ~~~~~G~Y~C~~ 55 (107)
...+.|.|.|.+
T Consensus 59 ~~~D~G~Y~C~a 70 (84)
T 2lu7_A 59 RSGDAGEYLCDA 70 (84)
T ss_dssp SSTTCEEEEEEC
T ss_pred CCcccEEEEEEE
Confidence 345789999976
No 123
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Probab=20.30 E-value=44 Score=19.79 Aligned_cols=13 Identities=8% Similarity=0.447 Sum_probs=10.4
Q ss_pred CCCCeEEEeccCC
Q psy12346 45 NTESGTYTCIVCA 57 (107)
Q Consensus 45 ~~~~G~Y~C~~Cg 57 (107)
..+.|.|.|.+-+
T Consensus 73 ~~D~G~Y~C~a~n 85 (103)
T 1x44_A 73 KADAAEYSVMTTG 85 (103)
T ss_dssp TTTCSEEEEEETT
T ss_pred cccCEEEEEEECC
Confidence 4679999998754
No 124
>3bp6_A Programmed cell death protein 1; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3rnk_A 3sbw_A 3bp5_A 1npu_A 3rnq_A
Probab=20.24 E-value=34 Score=21.30 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=9.0
Q ss_pred CCCeEEEeccC
Q psy12346 46 TESGTYTCIVC 56 (107)
Q Consensus 46 ~~~G~Y~C~~C 56 (107)
.+.|+|.|+.-
T Consensus 83 ~Dsg~Y~C~~~ 93 (117)
T 3bp6_A 83 NDSGIYLCGAI 93 (117)
T ss_dssp GGCEEEEEEEE
T ss_pred HHCEEEEEEEE
Confidence 47899999864
No 125
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Probab=20.03 E-value=35 Score=20.52 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.9
Q ss_pred CCCeEEEeccC
Q psy12346 46 TESGTYTCIVC 56 (107)
Q Consensus 46 ~~~G~Y~C~~C 56 (107)
.+.|+|.|.+-
T Consensus 79 ~D~G~Y~C~v~ 89 (110)
T 1ncn_A 79 KDKGLYQCIIH 89 (110)
T ss_dssp GGCEEEEEEEE
T ss_pred HHCEEEEEEEE
Confidence 46899999764
No 126
>3k74_B Nanobody; immunoglobulin, antibiotic resista methotrexate resistance, NADP, one-carbon metabolism, oxidoreductase, trimethoprim resistance; 1.95A {Lama glama}
Probab=20.02 E-value=40 Score=20.93 Aligned_cols=12 Identities=17% Similarity=0.479 Sum_probs=9.5
Q ss_pred CCCCeEEEeccC
Q psy12346 45 NTESGTYTCIVC 56 (107)
Q Consensus 45 ~~~~G~Y~C~~C 56 (107)
..+.|+|.|+.-
T Consensus 86 ~~Dsg~Y~C~~~ 97 (115)
T 3k74_B 86 SEDTAVYYCAKD 97 (115)
T ss_dssp GGGCEEEEEEES
T ss_pred hHhCEEEEEEEE
Confidence 357899999874
No 127
>1dqt_A CTLA4, cytotoxic T lymphocyte associated antigen 4; immunoglobulin variable domain-like beta-sandwich, homodimer, immune system; 2.00A {Mus musculus} SCOP: b.1.1.1
Probab=20.01 E-value=35 Score=21.05 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=9.1
Q ss_pred CCCCeEEEecc
Q psy12346 45 NTESGTYTCIV 55 (107)
Q Consensus 45 ~~~~G~Y~C~~ 55 (107)
..+.|+|.|+.
T Consensus 84 ~~Dsg~Y~C~~ 94 (117)
T 1dqt_A 84 AVDTGLYLCKV 94 (117)
T ss_dssp GGGCEEEEEEE
T ss_pred cccCEEEEEEE
Confidence 35799999987
No 128
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}
Probab=20.00 E-value=35 Score=19.73 Aligned_cols=12 Identities=42% Similarity=0.717 Sum_probs=9.4
Q ss_pred CCCeEEEeccCC
Q psy12346 46 TESGTYTCIVCA 57 (107)
Q Consensus 46 ~~~G~Y~C~~Cg 57 (107)
.+.|.|.|.+-.
T Consensus 60 ~d~G~Y~C~a~n 71 (91)
T 3bfo_A 60 EHQGTYWCHVYN 71 (91)
T ss_dssp GGCEEEEEEEEC
T ss_pred HhCEEEEEEEEc
Confidence 468999998754
Done!