RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12346
(107 letters)
>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine
sulfoxide reductase B, oxidized form, oxidoreductase;
1.66A {Xanthomonas campestris PV} PDB: 3hci_A*
Length = 154
Score = 150 bits (380), Expect = 3e-48
Identities = 35/94 (37%), Positives = 46/94 (48%)
Query: 1 MCDNNNAGGCKINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPL 60
M + ++ L L+ + V GTE PF G + N G YTC +C PL
Sbjct: 1 MSQFDLTPPSPAQRDALIAGLSDEEQRVLLHHGTEAPFCGVFLDNKLDGVYTCRLCGLPL 60
Query: 61 FSSQTKFDSGCGWPAFNDVLDQGKVKLTKDTSHG 94
F S KFDSG GWP+F D V+ +DTS+G
Sbjct: 61 FRSNAKFDSGTGWPSFFAPYDPAHVREIRDTSYG 94
>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB,
methionine sulfoxide reductase B, reduced form,
disulfide bond; 1.82A {Neisseria meningitidis serogroup
A} PDB: 3hch_A* 1l1d_A
Length = 146
Score = 149 bits (380), Expect = 3e-48
Identities = 37/84 (44%), Positives = 48/84 (57%)
Query: 11 KINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSG 70
K + ELK+ LT QY VTQ TE FS +Y+ + G Y +V +PLFSS K+DSG
Sbjct: 4 KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSG 63
Query: 71 CGWPAFNDVLDQGKVKLTKDTSHG 94
CGWP+F +D V D S+
Sbjct: 64 CGWPSFTRPIDAKSVTEHDDFSYN 87
>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn
binding, metal-binding, oxidoreductase; NMR
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 151
Score = 148 bits (376), Expect = 9e-48
Identities = 39/96 (40%), Positives = 56/96 (58%), Gaps = 2/96 (2%)
Query: 1 MCDNNNAGGCKINK--EELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQ 58
+ N +I +E ++ L P + V ++ GTE PF+GKY+ + G Y CI C
Sbjct: 10 VAKNRVEMVERIELSDDEWREILDPEAFRVARKAGTEPPFTGKYHDLHDDGIYRCICCGT 69
Query: 59 PLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKDTSHG 94
LF S+TKFDSG GWP+F DV+ + +KL +D S G
Sbjct: 70 DLFDSETKFDSGTGWPSFYDVVSEHNIKLREDRSLG 105
>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB,
oxidoreductase, MIC labcard, PSI-2, protein structure
initiative; 1.70A {Burkholderia pseudomallei strain}
PDB: 3cez_A
Length = 164
Score = 148 bits (377), Expect = 1e-47
Identities = 37/82 (45%), Positives = 51/82 (62%)
Query: 13 NKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCG 72
+ EL++RLTPMQY VTQ TE PF+G+Y ++G Y C+VC LF S K+ SGCG
Sbjct: 36 DDAELRRRLTPMQYEVTQHAATEPPFTGEYTDTEDAGIYHCVVCGTALFESGAKYHSGCG 95
Query: 73 WPAFNDVLDQGKVKLTKDTSHG 94
WP++ +D + D +HG
Sbjct: 96 WPSYFKPIDGEVIDEKMDYTHG 117
>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase;
2.60A {Bacillus subtilis} PDB: 1xm0_A 2kzn_A
Length = 144
Score = 147 bits (374), Expect = 2e-47
Identities = 42/84 (50%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 11 KINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSG 70
NKEE K L MQY VTQ GTE PF +Y + E G Y IV +PLF+S+ KFDS
Sbjct: 3 AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 62
Query: 71 CGWPAFNDVLDQGKVKLTKDTSHG 94
CGWP+F ++ +V+ DTSHG
Sbjct: 63 CGWPSFTKPIE-EEVEEKLDTSHG 85
>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria;
methionine sulfoxide reductase, oxidoreductase; NMR
{Mus musculus}
Length = 143
Score = 140 bits (355), Expect = 1e-44
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 7/86 (8%)
Query: 16 ELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPA 75
+ +K+LTP Q++VT+EKGTE PFSG Y N E+G Y C+ C PLFSS+ K+ SG GWP+
Sbjct: 3 DWQKKLTPEQFYVTREKGTEAPFSGMYLNNKETGMYHCVCCDSPLFSSEKKYCSGTGWPS 62
Query: 76 FNDVLD-------QGKVKLTKDTSHG 94
F++ + DTS G
Sbjct: 63 FSEAYGSKGSDESHTGILRRLDTSLG 88
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab,
linker, hinge, cell membrane, membrane, multifunctional
enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Length = 313
Score = 122 bits (307), Expect = 1e-35
Identities = 36/82 (43%), Positives = 49/82 (59%)
Query: 13 NKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCG 72
++E LK L+ Y VTQE TE PF+ Y++ E G Y I +PLF ++ KF SGCG
Sbjct: 172 SQEVLKASLSEESYRVTQEAATEAPFTNAYDQTFEEGIYVDITTGEPLFFAKDKFASGCG 231
Query: 73 WPAFNDVLDQGKVKLTKDTSHG 94
WP+F+ L + + KD SHG
Sbjct: 232 WPSFSRPLSKELIHYYKDLSHG 253
>2kao_A Methionine-R-sulfoxide reductase B1; mouse reduced methionine
sulfoxide reductase B1 (MSRB1) (SEC95Cys mutant,
selenocysteine; NMR {Mus musculus} PDB: 2kv1_A
Length = 124
Score = 94.2 bits (235), Expect = 1e-26
Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 36 RPFSGK-YNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKDTSHG 94
F G+ + + E G Y C C+ LFSS +K+ WPAF + + V + +
Sbjct: 5 SFFGGEVFQNHFEPGVYVCAKCSYELFSSHSKYAHSSPWPAFTETIHPDSVTKCPEKNRP 64
Query: 95 K 95
+
Sbjct: 65 E 65
>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural
genomics consortium, SGC, cytoplasm, metal-binding,
nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo
sapiens}
Length = 105
Score = 88.4 bits (220), Expect = 1e-24
Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 39 SGK-YNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFNDVLDQGKVKLTKDTSHG 94
S + + + E G Y C C LFSS++K+ WPAF + + V + +
Sbjct: 1 SMEVFQNHFEPGVYVCAKCGYELFSSRSKYAHSSPWPAFTETIHADSVAKRPEHNRS 57
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.8 bits (58), Expect = 1.3
Identities = 9/22 (40%), Positives = 10/22 (45%), Gaps = 2/22 (9%)
Query: 84 KVKLTKDTSHGKLYGDLVSSHP 105
K L K + KLY D S P
Sbjct: 19 KQALKKLQASLKLYAD--DSAP 38
>2cxi_A Phenylalanyl-tRNA synthetase beta chain; aminoacyl-tRNA synthetase,
ligase, structural genomics; HET: MSE; 1.94A {Pyrococcus
horikoshii}
Length = 348
Score = 26.0 bits (57), Expect = 2.8
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 5 NNAGGCKINKEELKKRLTPMQYHVTQEKGT 34
G ++N E+K+ L M Y V +G
Sbjct: 291 RKLSGLELNDGEIKELLEKMMYEVEISRGR 320
>3ktz_A Ribosome-inactivating protein gelonin; plant seeds, glycosidase,
disulfide bond, glycoprotein, hydrolase, plant defense;
HET: NAG; 1.60A {Gelonium multiflorum} PDB: 3ku0_A*
Length = 251
Score = 25.8 bits (56), Expect = 2.9
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 5/46 (10%)
Query: 67 FDSGCGWPAFNDVLDQGKVKLTKDTSHGKL-----YGDLVSSHPKR 107
+ F D D L K+T +L Y L R
Sbjct: 78 YQVRNRSYFFKDAPDAAYEGLFKNTIKTRLHFGGSYPSLEGEKAYR 123
>2c3f_A HYLP1, hyaluronidase, phage associated; lyase, hyaluronan lyase,
phage tail fibre, triple-stranded beta- helix, scarlet
fever; 1.81A {Streptococcus pyogenes} SCOP: b.108.1.5
PDB: 2yvv_A* 2yw0_A 2yx2_A 2pk1_A* 3eka_A* 2dp5_A
Length = 358
Score = 25.7 bits (55), Expect = 3.7
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 1/36 (2%)
Query: 64 QTKFDSGCGWPAFNDVLDQGKVKLTKDTSHGKLYGD 99
Q K W + +L + ++ DT + GD
Sbjct: 31 QFKRMKAAEWARSDVILLESEIGFETDTGFARA-GD 65
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.4 bits (55), Expect = 4.4
Identities = 8/32 (25%), Positives = 12/32 (37%), Gaps = 2/32 (6%)
Query: 47 ESGTYTCIVCAQPLFSSQTKFDSGCGWPAFND 78
G C +C L S D+ W F++
Sbjct: 39 SEGDVVCALCG--LVLSDKLVDTRSEWRTFSN 68
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 5.6
Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 19 KRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSGCGWPAFND 78
LT H EKG + Y+ + + +F + + + +
Sbjct: 1670 VNLT---IHFGGEKG--KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKG 1724
Query: 79 VLDQGKVKLTKDT 91
+L T+ T
Sbjct: 1725 LLS-----ATQFT 1732
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.314 0.132 0.409
Gapped
Lambda K H
0.267 0.0813 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,520,691
Number of extensions: 71229
Number of successful extensions: 329
Number of sequences better than 10.0: 1
Number of HSP's gapped: 328
Number of HSP's successfully gapped: 22
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.3 bits)