RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12346
         (107 letters)



>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase
           MsrB {Bacillus subtilis [TaxId: 1423]}
          Length = 143

 Score = 93.8 bits (233), Expect = 9e-27
 Identities = 42/94 (44%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 11  KINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSG 70
             NKEE  K L  MQY VTQ  GTE PF  +Y  + E G Y  IV  +PLF+S+ KFDS 
Sbjct: 2   AYNKEEKIKSLNRMQYEVTQNNGTEPPFQNEYWDHKEEGLYVDIVSGKPLFTSKDKFDSQ 61

Query: 71  CGWPAFNDVLDQGKVKLTKDTSHGKLYGDLVSSH 104
           CGWP+F   +++   +   DTSHG +  ++ S  
Sbjct: 62  CGWPSFTKPIEEEVEEKL-DTSHGMIRTEVRSRT 94


>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine
           sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId:
           485]}
          Length = 144

 Score = 79.7 bits (196), Expect = 3e-21
 Identities = 38/94 (40%), Positives = 50/94 (53%)

Query: 11  KINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGTYTCIVCAQPLFSSQTKFDSG 70
           K +  ELK+ LT  QY VTQ   TE  FS +Y+   + G Y  +V  +PLFSS  K+DSG
Sbjct: 3   KPSDAELKRTLTEEQYQVTQNSATEYAFSHEYDHLFKPGIYVDVVSGEPLFSSADKYDSG 62

Query: 71  CGWPAFNDVLDQGKVKLTKDTSHGKLYGDLVSSH 104
           CGWP+F   +D   V    D S      ++ S  
Sbjct: 63  CGWPSFTRPIDAKSVTEHDDFSFNMRRTEVRSRA 96


>d3c1va1 a.39.1.2 (A:2-94) Calcyclin (S100) {Human (Homo sapiens),
          s100a4 [TaxId: 9606]}
          Length = 93

 Score = 24.8 bits (54), Expect = 1.5
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 1  MCDNNNAGGCKINKEELKKRLTPMQYHVTQEKGTE 35
                    K+NK ELK+ LT        ++  E
Sbjct: 17 KYSGKEGDKFKLNKSELKELLTRELPSFLGKRTDE 51


>d1ogya2 c.81.1.1 (A:12-681) Periplasmic nitrate reductase alpha
           chain {Rhodobacter sphaeroides [TaxId: 1063]}
          Length = 670

 Score = 23.8 bits (50), Expect = 6.8
 Identities = 4/43 (9%), Positives = 15/43 (34%)

Query: 8   GGCKINKEELKKRLTPMQYHVTQEKGTERPFSGKYNKNTESGT 50
            G  +   +    +  + + V + + T   +   ++   + G 
Sbjct: 603 HGHDLAPFDTYHEVRGLHWPVVEGEETRWRYREGFDPYVKPGE 645


>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle
          domain {Aspergillus aculeatus [TaxId: 5053]}
          Length = 87

 Score = 22.8 bits (48), Expect = 8.2
 Identities = 5/26 (19%), Positives = 8/26 (30%)

Query: 27 HVTQEKGTERPFSGKYNKNTESGTYT 52
            +    +       YN   +  TYT
Sbjct: 13 TASGADSSMDWVVHWYNDAAQYWTYT 38


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.132    0.409 

Gapped
Lambda     K      H
   0.267   0.0616    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 388,098
Number of extensions: 14919
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 33
Number of HSP's successfully gapped: 10
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)