Query psy12347
Match_columns 428
No_of_seqs 323 out of 2272
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 16:42:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2287|consensus 100.0 8.1E-50 1.7E-54 397.9 24.9 218 24-245 74-305 (349)
2 PLN03133 beta-1,3-galactosyltr 100.0 2E-48 4.4E-53 404.6 23.9 218 14-241 358-592 (636)
3 PF01762 Galactosyl_T: Galacto 100.0 2E-48 4.4E-53 359.2 17.4 185 54-242 1-195 (195)
4 PLN03193 beta-1,3-galactosyltr 100.0 4.1E-47 8.8E-52 374.3 22.0 201 41-250 140-359 (408)
5 KOG2288|consensus 100.0 1.9E-35 4.1E-40 270.9 15.6 200 41-249 12-228 (274)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 1.1E-30 2.4E-35 254.1 15.9 176 36-232 74-303 (382)
7 KOG2287|consensus 100.0 7.6E-29 1.6E-33 247.3 14.0 123 305-427 75-211 (349)
8 PLN03193 beta-1,3-galactosyltr 100.0 1.4E-28 3E-33 243.1 12.8 108 319-427 138-260 (408)
9 PLN03133 beta-1,3-galactosyltr 100.0 5.8E-28 1.3E-32 251.9 13.3 118 309-427 371-499 (636)
10 PF01762 Galactosyl_T: Galacto 99.9 3.3E-26 7.2E-31 211.0 9.3 94 334-427 1-104 (195)
11 PTZ00210 UDP-GlcNAc-dependent 99.8 2.5E-21 5.5E-26 188.9 10.1 108 320-427 80-223 (382)
12 KOG2288|consensus 99.8 5E-20 1.1E-24 169.5 10.1 109 319-428 10-133 (274)
13 PF02434 Fringe: Fringe-like; 99.8 3.6E-19 7.7E-24 170.3 13.1 194 41-250 7-211 (252)
14 KOG2246|consensus 99.6 2.4E-15 5.2E-20 150.0 12.9 170 41-246 92-273 (364)
15 PLN03153 hypothetical protein; 99.2 1.8E-10 3.9E-15 117.3 13.5 179 41-246 123-317 (537)
16 PF02434 Fringe: Fringe-like; 98.9 4.8E-09 1E-13 100.5 7.1 101 321-427 7-110 (252)
17 KOG2246|consensus 98.7 2.2E-08 4.8E-13 100.3 6.8 97 319-427 90-192 (364)
18 PLN03153 hypothetical protein; 97.3 0.00094 2E-08 68.9 9.5 99 321-427 123-234 (537)
19 KOG3708|consensus 97.0 0.0054 1.2E-07 62.6 10.4 157 41-239 27-190 (681)
20 PF01755 Glyco_transf_25: Glyc 96.6 0.033 7.2E-07 51.0 12.2 99 44-147 4-108 (200)
21 PF13641 Glyco_tranf_2_3: Glyc 95.7 0.41 9E-06 44.1 14.6 188 42-242 3-203 (228)
22 cd06532 Glyco_transf_25 Glycos 95.5 0.18 3.9E-06 43.0 10.5 115 44-214 2-119 (128)
23 PF00535 Glycos_transf_2: Glyc 94.9 0.44 9.5E-06 40.7 11.6 157 44-208 4-168 (169)
24 cd04186 GT_2_like_c Subfamily 94.9 0.83 1.8E-05 39.2 13.3 86 123-243 74-159 (166)
25 cd02520 Glucosylceramide_synth 94.8 2.4 5.2E-05 38.3 16.5 141 66-244 30-172 (196)
26 TIGR03472 HpnI hopanoid biosyn 94.5 0.93 2E-05 45.9 14.2 190 41-241 42-245 (373)
27 cd04196 GT_2_like_d Subfamily 94.2 1.9 4.2E-05 38.9 14.6 157 66-233 27-188 (214)
28 cd02525 Succinoglycan_BP_ExoA 93.8 2.9 6.3E-05 38.7 15.2 165 66-243 31-202 (249)
29 TIGR03469 HonB hopene-associat 93.2 6.2 0.00013 40.1 17.6 190 41-239 41-252 (384)
30 cd04192 GT_2_like_e Subfamily 92.8 1.9 4.2E-05 39.3 12.2 160 67-236 29-195 (229)
31 cd06423 CESA_like CESA_like is 92.5 1.9 4.2E-05 36.7 11.2 77 66-148 26-103 (180)
32 cd04185 GT_2_like_b Subfamily 92.3 6.5 0.00014 35.3 14.8 138 66-238 26-163 (202)
33 cd06433 GT_2_WfgS_like WfgS an 91.8 8.5 0.00019 33.9 16.5 122 112-241 65-186 (202)
34 PF13506 Glyco_transf_21: Glyc 91.8 0.94 2E-05 40.8 8.4 127 107-242 16-147 (175)
35 PLN02726 dolichyl-phosphate be 91.7 4.4 9.5E-05 38.0 13.3 188 41-242 10-211 (243)
36 cd06421 CESA_CelA_like CESA_Ce 91.1 6 0.00013 36.2 13.5 188 42-242 3-204 (234)
37 cd06439 CESA_like_1 CESA_like_ 91.0 10 0.00022 35.3 15.1 184 41-242 30-222 (251)
38 cd02510 pp-GalNAc-T pp-GalNAc- 90.2 19 0.0004 34.9 16.9 124 113-242 74-218 (299)
39 cd04187 DPM1_like_bac Bacteria 90.0 4.4 9.5E-05 35.8 11.1 136 66-210 29-164 (181)
40 cd06434 GT2_HAS Hyaluronan syn 89.5 6.7 0.00015 36.0 12.3 98 43-148 3-102 (235)
41 cd06435 CESA_NdvC_like NdvC_li 88.6 16 0.00035 33.6 14.2 119 112-243 72-203 (236)
42 cd06427 CESA_like_2 CESA_like_ 88.3 16 0.00034 34.1 14.0 123 112-243 74-206 (241)
43 PRK11204 N-glycosyltransferase 88.2 22 0.00047 36.4 16.1 183 41-242 55-253 (420)
44 PF04646 DUF604: Protein of un 87.9 1 2.2E-05 42.9 5.4 51 194-245 12-65 (255)
45 COG1216 Predicted glycosyltran 87.8 29 0.00062 33.9 17.0 191 42-242 5-213 (305)
46 cd02526 GT2_RfbF_like RfbF is 87.6 23 0.00049 32.5 16.4 144 91-242 46-197 (237)
47 PRK10714 undecaprenyl phosphat 84.3 21 0.00046 35.4 13.2 134 66-210 38-174 (325)
48 cd04184 GT2_RfbC_Mx_like Myxoc 82.1 36 0.00078 30.2 16.7 185 42-242 3-194 (202)
49 cd04179 DPM_DPG-synthase_like 81.4 9 0.0002 33.6 8.4 135 66-209 28-167 (185)
50 cd04195 GT2_AmsE_like GT2_AmsE 80.8 40 0.00087 29.9 13.5 76 66-148 29-105 (201)
51 cd06442 DPM1_like DPM1_like re 79.8 24 0.00052 31.9 11.0 113 123-242 78-196 (224)
52 cd04191 Glucan_BSP_ModH Glucan 79.6 23 0.00051 33.8 11.1 189 44-243 3-225 (254)
53 cd06420 GT2_Chondriotin_Pol_N 79.5 41 0.00089 29.2 16.2 101 113-239 70-170 (182)
54 PF13641 Glyco_tranf_2_3: Glyc 78.6 15 0.00032 33.6 9.2 101 322-426 3-109 (228)
55 PF13632 Glyco_trans_2_3: Glyc 77.9 7.1 0.00015 34.9 6.7 109 126-243 1-118 (193)
56 TIGR01556 rhamnosyltran L-rham 77.3 14 0.0003 35.4 8.9 123 113-242 65-194 (281)
57 COG1215 Glycosyltransferases, 77.3 54 0.0012 33.3 13.8 192 41-244 55-260 (439)
58 cd04188 DPG_synthase DPG_synth 76.9 46 0.00099 30.0 11.9 163 66-242 30-201 (211)
59 PRK14583 hmsR N-glycosyltransf 76.8 97 0.0021 32.1 16.3 183 41-243 76-275 (444)
60 cd06438 EpsO_like EpsO protein 74.3 27 0.00058 30.9 9.4 37 112-148 70-106 (183)
61 KOG3708|consensus 71.7 9.5 0.00021 39.8 6.2 90 322-426 28-120 (681)
62 cd00761 Glyco_tranf_GTA_type G 70.3 57 0.0012 26.5 13.1 35 113-148 68-102 (156)
63 PRK14716 bacteriophage N4 adso 68.4 1.4E+02 0.003 31.8 14.3 192 41-243 67-283 (504)
64 PF00535 Glycos_transf_2: Glyc 67.9 68 0.0015 26.8 10.2 84 337-426 18-101 (169)
65 PF10111 Glyco_tranf_2_2: Glyc 66.5 1.2E+02 0.0027 29.1 12.8 167 66-241 34-214 (281)
66 TIGR03111 glyc2_xrt_Gpos1 puta 66.4 1.7E+02 0.0036 30.3 14.6 102 41-148 50-156 (439)
67 cd02514 GT13_GLCNAC-TI GT13_GL 65.5 20 0.00043 35.9 7.0 96 112-224 87-186 (334)
68 COG3306 Glycosyltransferase in 63.0 33 0.00071 33.0 7.7 164 44-226 5-188 (255)
69 TIGR03469 HonB hopene-associat 61.3 54 0.0012 33.2 9.5 86 341-426 65-156 (384)
70 cd06423 CESA_like CESA_like is 60.2 86 0.0019 26.1 9.5 72 348-424 28-99 (180)
71 cd04192 GT_2_like_e Subfamily 57.4 1.1E+02 0.0025 27.3 10.3 75 348-426 30-105 (229)
72 TIGR03472 HpnI hopanoid biosyn 55.1 1.8E+02 0.0039 29.3 12.1 77 347-426 71-149 (373)
73 cd02522 GT_2_like_a GT_2_like_ 54.6 1.6E+02 0.0035 26.3 14.3 110 114-238 64-176 (221)
74 cd06434 GT2_HAS Hyaluronan syn 52.9 1.8E+02 0.0039 26.3 12.2 72 347-426 29-100 (235)
75 cd04186 GT_2_like_c Subfamily 51.5 1.4E+02 0.0031 24.9 9.6 24 403-426 74-97 (166)
76 COG4092 Predicted glycosyltran 50.4 98 0.0021 30.0 8.3 78 66-146 38-117 (346)
77 cd04185 GT_2_like_b Subfamily 46.5 2.1E+02 0.0045 25.3 10.5 74 348-425 28-101 (202)
78 PRK11204 N-glycosyltransferase 46.2 2.9E+02 0.0062 28.0 12.1 71 350-426 86-157 (420)
79 cd04196 GT_2_like_d Subfamily 45.0 1.5E+02 0.0032 26.2 8.8 75 347-426 28-102 (214)
80 PF13704 Glyco_tranf_2_4: Glyc 44.9 1.1E+02 0.0023 23.9 7.0 71 66-140 18-88 (97)
81 cd06427 CESA_like_2 CESA_like_ 44.9 1.1E+02 0.0024 28.2 8.2 34 392-426 74-107 (241)
82 cd02520 Glucosylceramide_synth 43.6 2.3E+02 0.0051 25.0 10.9 82 341-426 26-109 (196)
83 PF03452 Anp1: Anp1; InterPro 43.0 2.8E+02 0.006 26.9 10.4 113 41-162 26-176 (269)
84 cd06421 CESA_CelA_like CESA_Ce 42.6 2.2E+02 0.0047 25.6 9.7 31 395-426 77-107 (234)
85 PHA01631 hypothetical protein 42.6 1E+02 0.0022 27.5 6.8 81 108-214 54-136 (176)
86 COG4092 Predicted glycosyltran 40.3 85 0.0018 30.4 6.3 63 363-426 53-117 (346)
87 PF05412 Peptidase_C33: Equine 38.0 19 0.0004 29.6 1.4 29 388-416 48-81 (108)
88 PF01755 Glyco_transf_25: Glyc 35.5 1.8E+02 0.0039 26.1 7.8 92 324-419 4-101 (200)
89 cd02525 Succinoglycan_BP_ExoA 35.0 3.4E+02 0.0074 24.5 11.4 73 347-426 32-104 (249)
90 PF05412 Peptidase_C33: Equine 33.5 28 0.00061 28.5 1.7 29 108-136 48-81 (108)
91 PF04666 Glyco_transf_54: N-Ac 32.3 3.4E+02 0.0074 26.7 9.5 102 38-141 50-187 (297)
92 cd06532 Glyco_transf_25 Glycos 32.1 2.5E+02 0.0054 23.4 7.6 93 324-418 2-97 (128)
93 cd02526 GT2_RfbF_like RfbF is 31.7 3.9E+02 0.0084 24.1 10.0 52 371-425 46-97 (237)
94 TIGR03030 CelA cellulose synth 30.6 7.4E+02 0.016 27.5 12.9 128 105-242 212-351 (713)
95 cd04179 DPM_DPG-synthase_like 30.1 3.3E+02 0.0072 23.3 8.4 83 338-426 19-102 (185)
96 cd04188 DPG_synthase DPG_synth 28.7 4.1E+02 0.009 23.6 9.0 75 347-426 31-105 (211)
97 PRK11234 nfrB bacteriophage N4 27.7 9E+02 0.019 27.0 13.7 187 41-242 64-279 (727)
98 PRK05454 glucosyltransferase M 27.1 6.2E+02 0.013 28.1 11.3 195 36-243 119-350 (691)
99 cd04187 DPM1_like_bac Bacteria 26.2 4.2E+02 0.0091 22.7 9.4 74 347-426 30-103 (181)
100 PF13704 Glyco_tranf_2_4: Glyc 25.8 3.1E+02 0.0068 21.1 7.6 48 372-420 41-88 (97)
101 cd06439 CESA_like_1 CESA_like_ 24.6 5.4E+02 0.012 23.4 11.8 33 393-426 100-132 (251)
102 PF10111 Glyco_tranf_2_2: Glyc 23.2 4.5E+02 0.0098 25.1 8.6 75 347-426 35-111 (281)
103 TIGR01556 rhamnosyltran L-rham 23.0 3.7E+02 0.0081 25.3 8.0 33 392-426 64-96 (281)
104 PRK14583 hmsR N-glycosyltransf 22.7 8.4E+02 0.018 25.0 12.2 98 322-426 77-178 (444)
105 PRK11498 bcsA cellulose syntha 22.3 1.2E+03 0.026 26.6 13.6 128 105-241 323-461 (852)
106 cd00761 Glyco_tranf_GTA_type G 21.5 4.2E+02 0.009 21.0 10.1 30 394-424 69-98 (156)
107 cd06442 DPM1_like DPM1_like re 20.8 5.6E+02 0.012 22.7 8.4 24 403-426 78-101 (224)
108 PRK10714 undecaprenyl phosphat 20.7 8.1E+02 0.018 24.1 10.9 75 347-427 39-114 (325)
No 1
>KOG2287|consensus
Probab=100.00 E-value=8.1e-50 Score=397.90 Aligned_cols=218 Identities=33% Similarity=0.565 Sum_probs=194.9
Q ss_pred CCCCCccccc-cC-CCCCC---cEEEEEEcCCCCHHHHHHHHHHhcc-------cceEEEEecCCC-h-hHHHHHHHHHh
Q psy12347 24 INLTNFEFLI-NP-PCLDT---VYLVLIHSAPYNYERRRLIRNTWGP-------RVSLYFFIGETD-P-SNQTRLDIESE 89 (428)
Q Consensus 24 ~~~~~~~~~~-~~-~C~~~---~lli~V~S~~~~~~~R~~IR~TW~~-------~~~~~F~vG~~~-~-~~~~~l~~E~~ 89 (428)
.+...+.+++ .+ .|... +++++|+|+++|+++|++||+|||+ .++++|++|.+. + +++..|.+|++
T Consensus 74 ~~~~~~~~~l~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~ 153 (349)
T KOG2287|consen 74 ADFQKFFYLLYLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEAR 153 (349)
T ss_pred hhhccChhhhcCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHH
Confidence 4555555555 33 44443 8999999999999999999999999 699999999993 2 55899999999
Q ss_pred hCCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcc
Q psy12347 90 TYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPV 169 (428)
Q Consensus 90 ~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~ 169 (428)
.||||||+||.|+|.|||+|+++++.|+..+||+++|++|+|||+|||+++|+++|.+... ..+..++|.+ ..+.+|
T Consensus 154 ~ygDIi~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~--~~~~~~~G~v-~~~~~p 230 (349)
T KOG2287|consen 154 LYGDIIQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLND--PSSDLYYGRV-IQNAPP 230 (349)
T ss_pred HhCCEEEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCC--CCcceEEEee-cccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999842 4678888888 777999
Q ss_pred cccCCCCcccCccccCCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecCCCC
Q psy12347 170 LRTYRSKWRVSFSEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSWWP 245 (428)
Q Consensus 170 ~R~~~~kw~vs~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~~~~ 245 (428)
+|+..+|||||+++||+..||+||+|+|||+|+++|++|++++.+ .+++++|||++||.+++.+||.+.+.+.+.
T Consensus 231 ~R~~~~KwyVp~~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~-~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~ 305 (349)
T KOG2287|consen 231 IRDKTSKWYVPESEYPCSVYPPYASGPGYVISGDAARRLLKASKH-LKFFPIEDVFVGGCLAEDLGIKPVNHPGFF 305 (349)
T ss_pred CCCCCCCCccCHHHCCCCCCCCcCCCceeEecHHHHHHHHHHhcC-CCccchHHHHHHHHHHHhcCCCcccCcccc
Confidence 999999999999999999999999999999999999999999998 999999999995555555699999998743
No 2
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=2e-48 Score=404.60 Aligned_cols=218 Identities=31% Similarity=0.442 Sum_probs=188.0
Q ss_pred CCCC-CCCCcCCCCCCccccccCCCCCC---cEEEEEEcCCCCHHHHHHHHHHhcc-------cceEEEEecCC-ChhHH
Q psy12347 14 LLPP-DDSTRLINLTNFEFLINPPCLDT---VYLVLIHSAPYNYERRRLIRNTWGP-------RVSLYFFIGET-DPSNQ 81 (428)
Q Consensus 14 ~l~~-~~~~~~~~~~~~~~~~~~~C~~~---~lli~V~S~~~~~~~R~~IR~TW~~-------~~~~~F~vG~~-~~~~~ 81 (428)
+||- +++.++++... +..++|+.. +|+|+|+|+|+|+++|+|||+|||+ .++++|++|.+ +...+
T Consensus 358 ~~p~~~~~~~~~d~e~---lkAppL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~ 434 (636)
T PLN03133 358 GLPTSEDSEHVIDLEA---LKSPPLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVN 434 (636)
T ss_pred CCCCCCchhcccchHH---hcCCCCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHH
Confidence 4442 34455555333 346678754 9999999999999999999999998 58899999999 77889
Q ss_pred HHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEE
Q psy12347 82 TRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCS 161 (428)
Q Consensus 82 ~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~ 161 (428)
..|++|+++||||||+||.|+|+|||+|+++++.|+. +|++++|+||+|||+|||+++|+++|.... ..+.+++|.
T Consensus 435 ~~L~~Ea~~ygDIIq~dF~DsY~NLTlKtl~~~~wa~-~c~~akFilK~DDDvFVnv~~Ll~~L~~~~---~~~~Ly~G~ 510 (636)
T PLN03133 435 EELWNEARTYGDIQLMPFVDYYSLITWKTLAICIFGT-EVVSAKYVMKTDDDAFVRVDEVLASLKRTN---VSHGLLYGL 510 (636)
T ss_pred HHHHHHHHHcCCeEEEeeechhhhhHHHHHHHHHHHH-hCCCceEEEEcCCceEEcHHHHHHHHHhcC---CCCceEEEE
Confidence 9999999999999999999999999999999999985 688999999999999999999999997653 245677777
Q ss_pred EeecCCcccccCCCCcccCccccCCCCCcCccccceEEeCHHHHHHHHHHhh--ccCCCCCcchhhhHHHHHH---hcCC
Q psy12347 162 IVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQ--TDQEYFWVDDVFITGIVFS---KLNL 236 (428)
Q Consensus 162 ~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~--~~~~~~~~eDv~itG~~~~---~~~i 236 (428)
+ ..+..|+|++.+|||+|.++||.+.|||||+|+|||||+++|+.|+.++. . .++|++||||+ |+|++ +.|+
T Consensus 511 v-~~~~~PiRd~~sKWYVs~~eyp~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~-l~~f~lEDVyv-Gi~l~~l~k~gl 587 (636)
T PLN03133 511 I-NSDSQPHRNPDSKWYISPEEWPEETYPPWAHGPGYVVSRDIAKEVYKRHKEGR-LKMFKLEDVAM-GIWIAEMKKEGL 587 (636)
T ss_pred e-ccCCCcccCCCCCCCCCHHHCCCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcc-cCcCChhhHhH-HHHHHHhcccCC
Confidence 6 77888999999999999999999999999999999999999999998763 5 89999999998 99976 4566
Q ss_pred ceeec
Q psy12347 237 THAKF 241 (428)
Q Consensus 237 ~~~~~ 241 (428)
.+.+.
T Consensus 588 ~v~~~ 592 (636)
T PLN03133 588 EVKYE 592 (636)
T ss_pred Cceee
Confidence 65443
No 3
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=2e-48 Score=359.16 Aligned_cols=185 Identities=42% Similarity=0.718 Sum_probs=172.8
Q ss_pred HHHHHHHHHhcc-------cceEEEEecCC---ChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCCC
Q psy12347 54 ERRRLIRNTWGP-------RVSLYFFIGET---DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPH 123 (428)
Q Consensus 54 ~~R~~IR~TW~~-------~~~~~F~vG~~---~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~ 123 (428)
++|++||+|||+ +++++|++|.+ ++..+..|++|+++|+||||+||.|+|+|||+|++++|+|+.++|++
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 589999999998 88999999999 45678889999999999999999999999999999999999999999
Q ss_pred ccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCccccceEEeCHH
Q psy12347 124 VKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHCHGNILLYSPD 203 (428)
Q Consensus 124 ~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~~G~~YvlS~~ 203 (428)
++|++|+|||+|||+++|.++|.+... ....+.++|+. ..+.+|.|++.+|||+|.++||...||+||+|+||+||++
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~~~~-~~~~~~~~g~~-~~~~~~~r~~~~kw~v~~~~y~~~~yP~y~~G~~yvls~~ 158 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKSLKQ-DPSKNSIYGGC-IKNGPPIRDPSSKWYVSEEEYPDDYYPPYCSGGGYVLSSD 158 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhhccc-Ccccccccccc-ccCCccccccccCceeeeeecccccCCCcCCCCeEEecHH
Confidence 999999999999999999999998721 14567788888 7778899999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 204 VVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 204 ~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
+++.|+.++.. .+.+++|||++ |+|+.++||+++|++
T Consensus 159 ~v~~i~~~~~~-~~~~~~eDv~i-Gi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 159 VVKRIYKASSH-TPFFPLEDVFI-GILAEKLGIKPIHDP 195 (195)
T ss_pred HHHHHHHHhhc-CCCCCchHHHH-HHHHHHCCCCccCCC
Confidence 99999999999 99999999999 999999999998874
No 4
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=4.1e-47 Score=374.27 Aligned_cols=201 Identities=20% Similarity=0.263 Sum_probs=179.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc------------cceEEEEecCC---ChhHHHHHHHHHhhCCCEEEecccCcCCc
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP------------RVSLYFFIGET---DPSNQTRLDIESETYHDIVQGRFWDSYRN 105 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~------------~~~~~F~vG~~---~~~~~~~l~~E~~~~~DIl~~d~~D~y~n 105 (428)
+++|+|+|+|+|++||++||+|||+ .++++|++|.+ +...+++|++|+++|||||++||+|+|.|
T Consensus 140 ~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~N 219 (408)
T PLN03193 140 LMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLE 219 (408)
T ss_pred EEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEeccccccc
Confidence 9999999999999999999999996 48999999998 45788999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCcccc-
Q psy12347 106 LTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEY- 184 (428)
Q Consensus 106 lt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y- 184 (428)
||+||+++|+|+.++| +++|+||+|||+|||+++|+++|.... ..+++|+|.+ . .. |+|+..++||.+++.|
T Consensus 220 LT~KTl~~f~wA~~~~-dAkF~mK~DDDvfVnv~~L~~~L~~~~---~~~rlYiG~m-~-~g-Pvr~~~~~ky~epe~w~ 292 (408)
T PLN03193 220 LSAKTKTYFATAVAMW-DADFYVKVDDDVHVNIATLGETLVRHR---KKPRVYIGCM-K-SG-PVLSQKGVRYHEPEYWK 292 (408)
T ss_pred chHHHHHHHHHHHHcC-CCeEEEEcCCCceEcHHHHHHHHHhcC---CCCCEEEEec-c-cC-ccccCCCCcCcCccccc
Confidence 9999999999999988 899999999999999999999997662 2345777766 3 33 5677666677776766
Q ss_pred ---CCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecCCCCCCCCc
Q psy12347 185 ---RDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSWWPGHDEP 250 (428)
Q Consensus 185 ---~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~~~~~~~~~ 250 (428)
+++.|||||+|+|||||+++++.|+.+... .+.+++||||+ |+|+..++|+++|.+.||+...+
T Consensus 293 ~~~~~~~YPpyAsG~gYVlS~DLa~~I~~n~~~-L~~y~~EDV~v-G~Wl~~L~V~~vdd~~fcc~~~~ 359 (408)
T PLN03193 293 FGENGNKYFRHATGQLYAISKDLASYISINQHV-LHKYANEDVSL-GSWFIGLDVEHIDDRRLCCGTPP 359 (408)
T ss_pred ccCccccCCCCCCcceEEehHHHHHHHHhChhh-hcccCcchhhh-hhHhccCCceeeecccccCCCCc
Confidence 679999999999999999999999988887 88899999998 99999999999999999987544
No 5
>KOG2288|consensus
Probab=100.00 E-value=1.9e-35 Score=270.85 Aligned_cols=200 Identities=24% Similarity=0.309 Sum_probs=182.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc------------cceEEEEecCC--ChhHHHHHHHHHhhCCCEEEec-ccCcCCc
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP------------RVSLYFFIGET--DPSNQTRLDIESETYHDIVQGR-FWDSYRN 105 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~------------~~~~~F~vG~~--~~~~~~~l~~E~~~~~DIl~~d-~~D~y~n 105 (428)
+++|+|.|+++..+||+++|+||+. ++.++|++|.. +....++|++|.++|+|.+.+| .+|.|.+
T Consensus 12 l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E~Y~~ 91 (274)
T KOG2288|consen 12 LLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEEAYEE 91 (274)
T ss_pred EEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHHHHHH
Confidence 8999999999999999999999998 89999999995 8889999999999999999999 9999999
Q ss_pred hhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccC
Q psy12347 106 LTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYR 185 (428)
Q Consensus 106 lt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~ 185 (428)
|+.||+.++.++..++ +++|++|+|||+|||+..|...|.+... .+..|+|. .++++|+-++.+|||.|+. +-
T Consensus 92 Ls~Kt~~~f~~A~~~~-daeFyvKvDDDv~v~l~~L~~~la~~r~---~pr~YiGc--mksg~v~~~~~~kw~EpeW-kf 164 (274)
T KOG2288|consen 92 LSAKTKAFFSAAVAHW-DAEFYVKVDDDVYVRLARLGTLLARERS---HPRLYIGC--MKSGPVLTQPGGKWYEPEW-KF 164 (274)
T ss_pred HHHHHHHHHHHHHHhc-cceEEEEccccceecHHHHHHHHHhhcc---CCceEEEE--ecCCccccCCCCcccChhh-hc
Confidence 9999999999999999 8999999999999999999999998832 35566665 4888888888999999983 33
Q ss_pred CCC--CcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecCCCCCCCC
Q psy12347 186 DHF--YPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSWWPGHDE 249 (428)
Q Consensus 186 ~~~--yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~~~~~~~~ 249 (428)
+.. |.+|+.|++|+||++++..|..+.+. ...+..|||.+ |.|+..++|++.|.+.+|+...
T Consensus 165 g~~g~YfrhA~G~~YvlS~dLa~yi~in~~l-L~~y~nEDVSl-GaW~~gldV~h~dd~rlC~~~~ 228 (274)
T KOG2288|consen 165 GDNGNYFRHATGGGYVLSKDLATYISINRQL-LHKYANEDVSL-GAWMIGLDVEHVDDPRLCCSTP 228 (274)
T ss_pred CcccccchhccCceEEeeHHHHHHHHHhHHH-HHhhccCCccc-ceeeeeeeeeEecCCcccccch
Confidence 333 99999999999999999999999888 88999999998 9999999999999999998765
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.97 E-value=1.1e-30 Score=254.09 Aligned_cols=176 Identities=18% Similarity=0.196 Sum_probs=150.6
Q ss_pred CCCCC--cEEEEEEcCCCC--HHHHHHHHHHhcc-------------cceEEEEecCC-Ch--hHHHHHHHHHhhCCCEE
Q psy12347 36 PCLDT--VYLVLIHSAPYN--YERRRLIRNTWGP-------------RVSLYFFIGET-DP--SNQTRLDIESETYHDIV 95 (428)
Q Consensus 36 ~C~~~--~lli~V~S~~~~--~~~R~~IR~TW~~-------------~~~~~F~vG~~-~~--~~~~~l~~E~~~~~DIl 95 (428)
..... .++++|+|..++ +.||+++|+||.+ .+.++|++|.. +. +.+.+|++|+++|+|||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 35544 899999999998 9999999999998 56789999998 44 89999999999999999
Q ss_pred Eecc------------------cCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcce
Q psy12347 96 QGRF------------------WDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNL 157 (428)
Q Consensus 96 ~~d~------------------~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~ 157 (428)
+++| .|++.|+|+||+++++|+...||+++|++|+|||+|||++++++.|+.. +.+.+
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~----prr~L 229 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM----PRHGL 229 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC----CCCce
Confidence 9999 7888999999999999999999999999999999999999999999766 34557
Q ss_pred EEEEEeecCCcccccCCCCcccCccccCCCCCcCccccceEEeCHHHHHHHHHHhhc-cC---------------CCCCc
Q psy12347 158 LMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQT-DQ---------------EYFWV 221 (428)
Q Consensus 158 ~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~-~~---------------~~~~~ 221 (428)
++|.+ .....+.|++ +|+||+|+||+||+++++.|++.... .. -.+..
T Consensus 230 Y~G~v-~~~~~p~Rd~---------------~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~ 293 (382)
T PTZ00210 230 YMGRY-NYYNRIWRRN---------------QLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFY 293 (382)
T ss_pred EEEee-CCCCccccCC---------------CCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCc
Confidence 88877 5555566643 59999999999999999999987432 01 12578
Q ss_pred chhhhHHHHHH
Q psy12347 222 DDVFITGIVFS 232 (428)
Q Consensus 222 eDv~itG~~~~ 232 (428)
||+.+ |.++.
T Consensus 294 EDiMv-G~vLr 303 (382)
T PTZ00210 294 EDVMV-GMILR 303 (382)
T ss_pred hHHHH-HHHHH
Confidence 99997 99985
No 7
>KOG2287|consensus
Probab=99.96 E-value=7.6e-29 Score=247.30 Aligned_cols=123 Identities=41% Similarity=0.711 Sum_probs=108.9
Q ss_pred CCCCccccc-cCC-CC-C--ceEEEEEECCCCChHHHHHHHHHhhcc-------ceEEEEEccCCcc--hhhhhHhhhhc
Q psy12347 305 NLTNFEFLI-NPP-CL-D--TVYLVLIHSAPYNYDKRRLIRNTWGTR-------VSVYFFIGETDPS--NQTRLDIESET 370 (428)
Q Consensus 305 ~~~~~~~~~-~~~-c~-~--~~~li~V~S~~~~~~~R~~iR~TW~~~-------~~~~F~~g~~~~~--~~~~l~~E~~~ 370 (428)
++..+...+ .|+ |. . +.++++|+|+++|++||++||+|||++ ++.+|++|.+..+ .+++|.+|++.
T Consensus 75 ~~~~~~~~l~~p~~~~~~~~~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~ 154 (349)
T KOG2287|consen 75 DFQKFFYLLYLPEICDPDRPPELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARL 154 (349)
T ss_pred hhccChhhhcCChhhcCCCCceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHH
Confidence 555555444 454 43 2 578999999999999999999999983 6789999998643 48899999999
Q ss_pred CCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHhh
Q psy12347 371 YHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLTR 427 (428)
Q Consensus 371 ~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~~ 427 (428)
||||||+||.|+|.|+|+||+++++|+..+||+|+||+|+|||+|||+++|+.+|.+
T Consensus 155 ygDIi~~df~Dty~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~ 211 (349)
T KOG2287|consen 155 YGDIIQVDFEDTYFNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDK 211 (349)
T ss_pred hCCEEEEecccchhchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999986
No 8
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=99.95 E-value=1.4e-28 Score=243.07 Aligned_cols=108 Identities=25% Similarity=0.374 Sum_probs=99.9
Q ss_pred CceEEEEEECCCCChHHHHHHHHHhhcc------------ceEEEEEccCC---cchhhhhHhhhhcCCCeEEeeeccCC
Q psy12347 319 DTVYLVLIHSAPYNYDKRRLIRNTWGTR------------VSVYFFIGETD---PSNQTRLDIESETYHDIVQGRFWDSY 383 (428)
Q Consensus 319 ~~~~li~V~S~~~~~~~R~~iR~TW~~~------------~~~~F~~g~~~---~~~~~~l~~E~~~~~Dii~~~~~d~y 383 (428)
..+++|+|+|+++|++||++||+|||++ ++++|++|.+. +..+++|++|+++|||||++||.|+|
T Consensus 138 ~~~LvIgI~Sap~~~~RR~AIR~TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY 217 (408)
T PLN03193 138 RYLMVVGINTAFSSRKRRDSVRATWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGY 217 (408)
T ss_pred eEEEEEEEeCCCCCHHHHHHHHHHHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEeccccc
Confidence 4678899999999999999999999862 56889999873 46788999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHhh
Q psy12347 384 RNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLTR 427 (428)
Q Consensus 384 ~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~~ 427 (428)
.|||+||+++|+|+.++| +|+|+||+|||+|||+++|+.+|++
T Consensus 218 ~NLT~KTl~~f~wA~~~~-dAkF~mK~DDDvfVnv~~L~~~L~~ 260 (408)
T PLN03193 218 LELSAKTKTYFATAVAMW-DADFYVKVDDDVHVNIATLGETLVR 260 (408)
T ss_pred ccchHHHHHHHHHHHHcC-CCeEEEEcCCCceEcHHHHHHHHHh
Confidence 999999999999999987 7999999999999999999999975
No 9
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=99.95 E-value=5.8e-28 Score=251.94 Aligned_cols=118 Identities=31% Similarity=0.449 Sum_probs=104.7
Q ss_pred ccccccCCCC---CceEEEEEECCCCChHHHHHHHHHhhcc-------ceEEEEEccC-CcchhhhhHhhhhcCCCeEEe
Q psy12347 309 FEFLINPPCL---DTVYLVLIHSAPYNYDKRRLIRNTWGTR-------VSVYFFIGET-DPSNQTRLDIESETYHDIVQG 377 (428)
Q Consensus 309 ~~~~~~~~c~---~~~~li~V~S~~~~~~~R~~iR~TW~~~-------~~~~F~~g~~-~~~~~~~l~~E~~~~~Dii~~ 377 (428)
+.-+..|+|+ +.+++|+|+|+|+|++||+|||+|||+. ++.+|++|.+ ++..+.+|++|+++||||||+
T Consensus 371 ~e~lkAppL~~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~~~~v~~rFvVG~s~n~~l~~~L~~Ea~~ygDIIq~ 450 (636)
T PLN03133 371 LEALKSPPLSPKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDAVRSGAVAVRFFVGLHKNQMVNEELWNEARTYGDIQLM 450 (636)
T ss_pred hHHhcCCCCCCCCceEEEEEEeCCcccHHHHHHHHHhhccccccCCCceEEEEEEecCCcHHHHHHHHHHHHHcCCeEEE
Confidence 4444556664 3578999999999999999999999973 5688999987 456788999999999999999
Q ss_pred eeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHhh
Q psy12347 378 RFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLTR 427 (428)
Q Consensus 378 ~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~~ 427 (428)
||.|+|+|+|+||++++.|+. +|++|+|+||+|||+|||+++|+++|++
T Consensus 451 dF~DsY~NLTlKtl~~~~wa~-~c~~akFilK~DDDvFVnv~~Ll~~L~~ 499 (636)
T PLN03133 451 PFVDYYSLITWKTLAICIFGT-EVVSAKYVMKTDDDAFVRVDEVLASLKR 499 (636)
T ss_pred eeechhhhhHHHHHHHHHHHH-hCCCceEEEEcCCceEEcHHHHHHHHHh
Confidence 999999999999999999975 6889999999999999999999999965
No 10
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=99.93 E-value=3.3e-26 Score=211.04 Aligned_cols=94 Identities=49% Similarity=0.832 Sum_probs=87.7
Q ss_pred HHHHHHHHHhhcc-------ceEEEEEccCC---cchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCC
Q psy12347 334 DKRRLIRNTWGTR-------VSVYFFIGETD---PSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPH 403 (428)
Q Consensus 334 ~~R~~iR~TW~~~-------~~~~F~~g~~~---~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~ 403 (428)
+||++||+|||+. ++++|++|.+. ...++.|++|+++||||||+||.|+|.|+|+||+++|+|+.++||+
T Consensus 1 ~rR~~IR~TW~~~~~~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c~~ 80 (195)
T PF01762_consen 1 ERRQAIRETWGNQRNFKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWASKHCPN 80 (195)
T ss_pred ChHHHHHHHHhcccccCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHHhhCCc
Confidence 5899999999974 57899999875 3567789999999999999999999999999999999999999999
Q ss_pred ccEEEEcCCceEeeHHHHHHHHhh
Q psy12347 404 VKYVLKLDDDVFMNVIQLDELLTR 427 (428)
Q Consensus 404 ~~~~~k~DDD~~v~~~~l~~~L~~ 427 (428)
++|++|+|||+|||+++|.++|++
T Consensus 81 ~~~v~k~DDD~~vn~~~l~~~L~~ 104 (195)
T PF01762_consen 81 AKYVLKVDDDVFVNPDRLVSFLKS 104 (195)
T ss_pred hhheeecCcEEEEehHHhhhhhhh
Confidence 999999999999999999999975
No 11
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=99.85 E-value=2.5e-21 Score=188.88 Aligned_cols=108 Identities=20% Similarity=0.249 Sum_probs=96.9
Q ss_pred ceEEEEEECCCCC--hHHHHHHHHHhhc-------------cceEEEEEccCC-c--chhhhhHhhhhcCCCeEEeee--
Q psy12347 320 TVYLVLIHSAPYN--YDKRRLIRNTWGT-------------RVSVYFFIGETD-P--SNQTRLDIESETYHDIVQGRF-- 379 (428)
Q Consensus 320 ~~~li~V~S~~~~--~~~R~~iR~TW~~-------------~~~~~F~~g~~~-~--~~~~~l~~E~~~~~Dii~~~~-- 379 (428)
-.++++|.|..++ +.||+++|+||.+ ++..+|++|.+. . +.++++++|+++|||||.++|
T Consensus 80 ~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIVilpf~d 159 (382)
T PTZ00210 80 FLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDIITLPTND 159 (382)
T ss_pred ceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEEEEeccc
Confidence 3456779999998 9999999999986 245779999873 3 678999999999999999999
Q ss_pred ----------------ccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHhh
Q psy12347 380 ----------------WDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLTR 427 (428)
Q Consensus 380 ----------------~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~~ 427 (428)
.|++.|+|+||+++++|+.+.||+++||+|+|||+|||+++++++|+.
T Consensus 160 ~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~ 223 (382)
T PTZ00210 160 VSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRV 223 (382)
T ss_pred CccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhh
Confidence 778889999999999999999999999999999999999999999964
No 12
>KOG2288|consensus
Probab=99.82 E-value=5e-20 Score=169.55 Aligned_cols=109 Identities=26% Similarity=0.415 Sum_probs=100.2
Q ss_pred CceEEEEEECCCCChHHHHHHHHHhhcc------------ceEEEEEccC--CcchhhhhHhhhhcCCCeEEee-eccCC
Q psy12347 319 DTVYLVLIHSAPYNYDKRRLIRNTWGTR------------VSVYFFIGET--DPSNQTRLDIESETYHDIVQGR-FWDSY 383 (428)
Q Consensus 319 ~~~~li~V~S~~~~~~~R~~iR~TW~~~------------~~~~F~~g~~--~~~~~~~l~~E~~~~~Dii~~~-~~d~y 383 (428)
..+++|+|.|+++..+||+.+|+||+.. +..+|++|.. +.+...+|++|+++|+|.+.+| ..|+|
T Consensus 10 k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~~g~~~~r~ie~E~~~~~DfllLd~h~E~Y 89 (274)
T KOG2288|consen 10 KVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTATLGASLDRALEEENAQHGDFLLLDRHEEAY 89 (274)
T ss_pred ceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCCccHHHHHHHHHHHHhcCCeEeechhHHHH
Confidence 4567899999999999999999999863 4577999985 4578899999999999999999 99999
Q ss_pred CChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHhhC
Q psy12347 384 RNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLTRT 428 (428)
Q Consensus 384 ~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~~~ 428 (428)
.+|+.||++++.++..++ +|+|++|+|||+|||+..|...|.++
T Consensus 90 ~~Ls~Kt~~~f~~A~~~~-daeFyvKvDDDv~v~l~~L~~~la~~ 133 (274)
T KOG2288|consen 90 EELSAKTKAFFSAAVAHW-DAEFYVKVDDDVYVRLARLGTLLARE 133 (274)
T ss_pred HHHHHHHHHHHHHHHHhc-cceEEEEccccceecHHHHHHHHHhh
Confidence 999999999999999999 79999999999999999999999863
No 13
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.80 E-value=3.6e-19 Score=170.31 Aligned_cols=194 Identities=16% Similarity=0.185 Sum_probs=101.0
Q ss_pred cEEEEEEcCCCCHHHH-HHHHHHhcc-cceEEE-EecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERR-RLIRNTWGP-RVSLYF-FIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWV 117 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R-~~IR~TW~~-~~~~~F-~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~ 117 (428)
+++|+|+|++++++.| .+|++||++ .-...| +....+..+ ..+ .-.+++..+....+...+++.++++.+-
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~~l----~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~y~ 80 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDPSL----PTV--TGVHLVNPNCDAGHCRKTLSCKMAYEYD 80 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--HHH----HHH--HGGGEEE-------------HHHHHHHH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCcccccc----ccc--cccccccCCCcchhhHHHHHHHHHHHHH
Confidence 8999999999988888 899999999 223344 343323322 222 3345666665555555555555555554
Q ss_pred HhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCcc-ccc
Q psy12347 118 VYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHC-HGN 196 (428)
Q Consensus 118 ~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~-~G~ 196 (428)
...-++++|++++|||+||++++|+++|...+ ...+.++|.. ....+... .. + .....-+...| .|+ +|+
T Consensus 81 ~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~---~~~~~yiG~~-~~~~~~~~-~~-~--~~~~~~~~~~~-~f~~GGa 151 (252)
T PF02434_consen 81 HFLNSDKDWFCFADDDTYVNVENLRRLLSKYD---PSEPIYIGRP-SGDRPIEI-IH-R--FNPNKSKDSGF-WFATGGA 151 (252)
T ss_dssp HHHHHT-SEEEEEETTEEE-HHHHHHHHTTS----TTS--EEE-E-E---------------------------EE-GGG
T ss_pred hhhcCCceEEEEEeCCceecHHHHHHHHhhCC---CccCEEeeee-ccCcccee-ec-c--ccccccCcCce-EeeCCCe
Confidence 33335789999999999999999999999985 3677888887 32222111 00 0 00000011122 344 678
Q ss_pred eEEeCHHHHHHHHHHhhc-c-CCC----CCcchhhhHHHHHHh-cCCceeecCCCCCCCCc
Q psy12347 197 ILLYSPDVVFKLYQHLQT-D-QEY----FWVDDVFITGIVFSK-LNLTHAKFSWWPGHDEP 250 (428)
Q Consensus 197 ~YvlS~~~v~~l~~~~~~-~-~~~----~~~eDv~itG~~~~~-~~i~~~~~~~~~~~~~~ 250 (428)
||+||+.++++|...+.. . ... -..||+.| |.|++. +||+.++++.|+.+.+.
T Consensus 152 G~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~l-G~ci~~~lgv~lt~s~~fhs~~~~ 211 (252)
T PF02434_consen 152 GYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTL-GYCIENLLGVPLTHSPLFHSHLEN 211 (252)
T ss_dssp -EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHH-HHHHHHTT---EEE-TT---SSS-
T ss_pred eHHHhHHHHHHHhhhcccccccCCcCCCCCcccChh-hhhHHhcCCcceeechhhcccCcc
Confidence 999999999999553322 0 122 24899999 999998 99999999999876655
No 14
>KOG2246|consensus
Probab=99.63 E-value=2.4e-15 Score=150.00 Aligned_cols=170 Identities=19% Similarity=0.237 Sum_probs=129.9
Q ss_pred cEEEEEEcCCCCHHHH-HHHHHHhcc-cceEEEEe---cCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERR-RLIRNTWGP-RVSLYFFI---GETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFK 115 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R-~~IR~TW~~-~~~~~F~v---G~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~ 115 (428)
.++++|.|++.+...| +++-+||++ .-+..|+- +..+.. + -.|..+..|+|+++..|+..+++
T Consensus 92 ~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~~s~~~~~-----------f-~~v~~~~~~g~~~~~~ktr~~~~ 159 (364)
T KOG2246|consen 92 RVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPTLSKDDSR-----------F-PTVYYNLPDGYRSLWRKTRIAFK 159 (364)
T ss_pred eEEEEEEecCcCceeehhhhhcccccccCcceecCccCCCCCCc-----------C-ceeeccCCcchHHHHHHHHHHHH
Confidence 9999999999988888 699999999 55556654 333221 1 23468899999999999999999
Q ss_pred HHHhhCC-CccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCccc
Q psy12347 116 WVVYNCP-HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHCH 194 (428)
Q Consensus 116 w~~~~c~-~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~~ 194 (428)
++.++.. +++|++|+|||||+.++||..+|..++ +.++.++|.. .+... .+.| --+
T Consensus 160 yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yD---p~~p~YiG~~-~~~~~-----------------~~~y--~~g 216 (364)
T KOG2246|consen 160 YVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYD---PEKPVYLGYR-SKSYF-----------------QNGY--SSG 216 (364)
T ss_pred HHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcC---CCCcEEeccc-ccccc-----------------cccc--ccC
Confidence 9996555 599999999999999999999999995 4667788875 11110 0111 127
Q ss_pred cceEEeCHHHHHHHHHHhhcc---CCC-C--CcchhhhHHHHHHhcCCceeecCCCCC
Q psy12347 195 GNILLYSPDVVFKLYQHLQTD---QEY-F--WVDDVFITGIVFSKLNLTHAKFSWWPG 246 (428)
Q Consensus 195 G~~YvlS~~~v~~l~~~~~~~---~~~-~--~~eDv~itG~~~~~~~i~~~~~~~~~~ 246 (428)
|+||++|..+++++++..... .+. . ..||+.| |.|++.+||.+++.....+
T Consensus 217 ~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i-~~Cl~~~GV~~~d~~d~dg 273 (364)
T KOG2246|consen 217 GAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRI-GRCLAEVGVPATDERDEDG 273 (364)
T ss_pred CCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHH-HHHHHHhCCCccCchhhhc
Confidence 789999999999988775441 122 2 3899999 9999999999998854443
No 15
>PLN03153 hypothetical protein; Provisional
Probab=99.20 E-value=1.8e-10 Score=117.27 Aligned_cols=179 Identities=16% Similarity=0.163 Sum_probs=113.5
Q ss_pred cEEEEEEcCCCCHHHH-HHHHHHhcccc--eEEEEecCCChhHHHHHHHHHhhCCCEEEecccCc----CCc---hhHH-
Q psy12347 41 VYLVLIHSAPYNYERR-RLIRNTWGPRV--SLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDS----YRN---LTYK- 109 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R-~~IR~TW~~~~--~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~----y~n---lt~K- 109 (428)
.++++|.++.+..+.| ..|+.+|.++. ..+|+.....+. .+...--- +.+. .|+ |.| ....
T Consensus 123 hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~~------~~~~~~P~-i~is-~d~s~f~y~~~~Gh~sa~ 194 (537)
T PLN03153 123 HIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSPE------EGDDSLPP-IMVS-EDTSRFRYTNPTGHPSGL 194 (537)
T ss_pred cEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCCC------CCcCCCCC-EEeC-CCcccccccCCCCcHHHH
Confidence 8999999988877655 89999999822 245554433110 00000001 1111 111 222 2221
Q ss_pred HH--HHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCC
Q psy12347 110 HT--MVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDH 187 (428)
Q Consensus 110 ~~--~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~ 187 (428)
-+ ++++-+..+-|+++|++++|||||+.+++|++.|..++ ..++.|+|+. .....-. ..+
T Consensus 195 rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YD---ptkp~YIGs~-Se~~~qn----~~f---------- 256 (537)
T PLN03153 195 RISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYD---PSEMVYVGGP-SESHSAN----SYF---------- 256 (537)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcC---CCCCEEeccc-ccccccc----ccc----------
Confidence 12 33444445578999999999999999999999999995 4677888876 2221100 000
Q ss_pred CCcCccccceEEeCHHHHHHHHHHhhc---cCCCCCcchhhhHHHHHHhcCCceeecCCCCC
Q psy12347 188 FYPPHCHGNILLYSPDVVFKLYQHLQT---DQEYFWVDDVFITGIVFSKLNLTHAKFSWWPG 246 (428)
Q Consensus 188 ~yP~y~~G~~YvlS~~~v~~l~~~~~~---~~~~~~~eDv~itG~~~~~~~i~~~~~~~~~~ 246 (428)
.|--.-+|+||+||+.+++.|...... ..+...-+|.-| |.|+..+||.++..++|.-
T Consensus 257 ~~~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL-~~CL~elGV~LT~~~gfhQ 317 (537)
T PLN03153 257 SHNMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRL-HACITELGVPLSREPGFHQ 317 (537)
T ss_pred ccccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHH-HHHHHHcCCCceecCCccc
Confidence 011122789999999999988775222 123345688888 9999999999999998863
No 16
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=98.85 E-value=4.8e-09 Score=100.52 Aligned_cols=101 Identities=22% Similarity=0.317 Sum_probs=57.7
Q ss_pred eEEEEEECCCC-ChHHHHHHHHHhhccce-EEE-EEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHH
Q psy12347 321 VYLVLIHSAPY-NYDKRRLIRNTWGTRVS-VYF-FIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWV 397 (428)
Q Consensus 321 ~~li~V~S~~~-~~~~R~~iR~TW~~~~~-~~F-~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~ 397 (428)
.++|+|+|+++ |..|-.+|++||++++. ..| +....+..+... ...+++..+...++...+++.++.+.+-
T Consensus 7 dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~~~~ifsd~~d~~l~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~y~ 80 (252)
T PF02434_consen 7 DIFIAVKTTKKFHKTRAPAIKQTWAKRCNKQTFIFSDAEDPSLPTV------TGVHLVNPNCDAGHCRKTLSCKMAYEYD 80 (252)
T ss_dssp GEEEEEE--GGGTTTTHHHHHHTGGGGSGGGEEEEESS--HHHHHH------HGGGEEE-------------HHHHHHHH
T ss_pred cEEEEEEeCHHHHHHHHHHHHHHHHhhcCCceEEecCccccccccc------cccccccCCCcchhhHHHHHHHHHHHHH
Confidence 47899999998 55555799999999864 345 455444333322 3345555555555555555555555553
Q ss_pred HHhCCCccEEEEcCCceEeeHHHHHHHHhh
Q psy12347 398 VYNCPHVKYVLKLDDDVFMNVIQLDELLTR 427 (428)
Q Consensus 398 ~~~c~~~~~~~k~DDD~~v~~~~l~~~L~~ 427 (428)
...-++++|++++|||+||++++|+++|.+
T Consensus 81 ~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~ 110 (252)
T PF02434_consen 81 HFLNSDKDWFCFADDDTYVNVENLRRLLSK 110 (252)
T ss_dssp HHHHHT-SEEEEEETTEEE-HHHHHHHHTT
T ss_pred hhhcCCceEEEEEeCCceecHHHHHHHHhh
Confidence 333357899999999999999999999974
No 17
>KOG2246|consensus
Probab=98.71 E-value=2.2e-08 Score=100.29 Aligned_cols=97 Identities=27% Similarity=0.397 Sum_probs=77.9
Q ss_pred CceEEEEEECCCCChHHH-HHHHHHhhccce-EEEEE---ccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHH
Q psy12347 319 DTVYLVLIHSAPYNYDKR-RLIRNTWGTRVS-VYFFI---GETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMV 393 (428)
Q Consensus 319 ~~~~li~V~S~~~~~~~R-~~iR~TW~~~~~-~~F~~---g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~ 393 (428)
+.-+++.|+|++.+...| +.+-+||+++.. ..|+. ++.+..... |..+..|+|+++..||..+
T Consensus 90 ~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~~~f~s~~~s~~~~~f~~------------v~~~~~~g~~~~~~ktr~~ 157 (364)
T KOG2246|consen 90 SGRVLCWVLTSPMRHVTRADAVKETWLKRCDKGIFFSPTLSKDDSRFPT------------VYYNLPDGYRSLWRKTRIA 157 (364)
T ss_pred CceEEEEEEecCcCceeehhhhhcccccccCcceecCccCCCCCCcCce------------eeccCCcchHHHHHHHHHH
Confidence 345678899888866666 499999999865 44655 444443333 5788899999999999999
Q ss_pred HHHHHHhCC-CccEEEEcCCceEeeHHHHHHHHhh
Q psy12347 394 FKWVVYNCP-HVKYVLKLDDDVFMNVIQLDELLTR 427 (428)
Q Consensus 394 l~w~~~~c~-~~~~~~k~DDD~~v~~~~l~~~L~~ 427 (428)
++++.++.. +++|++|+|||||+.++||..+|.+
T Consensus 158 ~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~ 192 (364)
T KOG2246|consen 158 FKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSK 192 (364)
T ss_pred HHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhh
Confidence 999985544 8999999999999999999999975
No 18
>PLN03153 hypothetical protein; Provisional
Probab=97.35 E-value=0.00094 Score=68.93 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=59.2
Q ss_pred eEEEEEECCCC-ChHHHHHHHHHhhcc-ce-EEEEEccCCcc-hhhhhHhhhhcCCCeEEeeeccC---C---CChHHH-
Q psy12347 321 VYLVLIHSAPY-NYDKRRLIRNTWGTR-VS-VYFFIGETDPS-NQTRLDIESETYHDIVQGRFWDS---Y---RNLTYK- 389 (428)
Q Consensus 321 ~~li~V~S~~~-~~~~R~~iR~TW~~~-~~-~~F~~g~~~~~-~~~~l~~E~~~~~Dii~~~~~d~---y---~nlt~K- 389 (428)
.++++|.++.+ +.+|+..|+.+|... ++ .+|+.....+. .... ---|.+.-..+ | .++...
T Consensus 123 hIvF~I~~s~~~w~~R~~yik~wW~p~~~rg~v~ld~~~~~~~~~~~--------~P~i~is~d~s~f~y~~~~Gh~sa~ 194 (537)
T PLN03153 123 HIMFGIAGSSQLWKRRKELVRLWWRPNQMRGHVWLEEQVSPEEGDDS--------LPPIMVSEDTSRFRYTNPTGHPSGL 194 (537)
T ss_pred cEEEEEEEchhhhhhhhhhhhhhcCcccceeEEEecccCCCCCCcCC--------CCCEEeCCCcccccccCCCCcHHHH
Confidence 46788877777 667778999999874 43 34544332110 0000 00022211111 2 233332
Q ss_pred HH--HHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHhh
Q psy12347 390 HT--MVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLTR 427 (428)
Q Consensus 390 ~~--~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~~ 427 (428)
-+ +.++-+..+.|+++|++++|||+|+.+++|++.|.+
T Consensus 195 rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~ 234 (537)
T PLN03153 195 RISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSK 234 (537)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhh
Confidence 12 344444555789999999999999999999999975
No 19
>KOG3708|consensus
Probab=96.97 E-value=0.0054 Score=62.64 Aligned_cols=157 Identities=14% Similarity=0.140 Sum_probs=104.3
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc-cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHH-HHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP-RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKH-TMVFKWVV 118 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~-~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~-~~~l~w~~ 118 (428)
.+++.|+|. ...--+|-+|=|. --++-|+.+.+.-. .|.-+...+..|.--..|+ .+.++++.
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhvprv~~F~~~~~i~------------~~~a~~~~vs~~d~r~~~~~s~vl~~l~ 91 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHVPRVHLFADSSRID------------NDLAQLTNVSPYDLRGQKTHSMVLGLLF 91 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhcceeEEeecccccc------------ccHhhccccCccccCccccHHHHHHHHH
Confidence 778888882 2666788888888 44556666654111 1222233333343333444 55679998
Q ss_pred hhCC-CccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCcc-ccc
Q psy12347 119 YNCP-HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHC-HGN 196 (428)
Q Consensus 119 ~~c~-~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~-~G~ 196 (428)
+++. +++|++.+-|+||||...|++++...++ +.++++|.-.. +.++ . | .|.
T Consensus 92 ~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsi---n~dlymGEe~~-------~gs~---------------r-C~l~~ 145 (681)
T KOG3708|consen 92 NMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSI---NEDLYMGEEAE-------DGSG---------------R-CRLDT 145 (681)
T ss_pred HhhccccceEEEecCcceecHHHHHHHHhhccc---ccccccchhhh-------CccC---------------c-ccccc
Confidence 8876 4999999999999999999999998864 56788884311 1111 1 5 467
Q ss_pred eEEeCHHHHHHHHHHhhc--cCCCCCcchhhhHHHHHH-hcCCcee
Q psy12347 197 ILLYSPDVVFKLYQHLQT--DQEYFWVDDVFITGIVFS-KLNLTHA 239 (428)
Q Consensus 197 ~YvlS~~~v~~l~~~~~~--~~~~~~~eDv~itG~~~~-~~~i~~~ 239 (428)
||++|+.++.+|-.+-.. +.-.-.=+|+.+ |.|.. ..||...
T Consensus 146 G~LLS~s~l~~lrnnle~C~~~~lsad~d~~l-grCi~~At~v~C~ 190 (681)
T KOG3708|consen 146 GMLLSQSLLHALRNNLEGCRNDILSADPDEWL-GRCIQDATGVGCK 190 (681)
T ss_pred ceeecHHHHHHHHhhHHHhhcccccCCcHHHH-HHHHHHhhcCCcc
Confidence 999999999999776443 022233567888 99998 4566543
No 20
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=96.62 E-value=0.033 Score=51.02 Aligned_cols=99 Identities=17% Similarity=0.233 Sum_probs=60.3
Q ss_pred EEEEcCCCCHHHHHHHHHHhcc-cceEEEEecCCChhHHHHHHHHHhhCCCEEE-----ecccCcCCchhHHHHHHHHHH
Q psy12347 44 VLIHSAPYNYERRRLIRNTWGP-RVSLYFFIGETDPSNQTRLDIESETYHDIVQ-----GRFWDSYRNLTYKHTMVFKWV 117 (428)
Q Consensus 44 i~V~S~~~~~~~R~~IR~TW~~-~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~-----~d~~D~y~nlt~K~~~~l~w~ 117 (428)
|.|.|-+...+||+.+.+.... ++..-|+-|........ .+....++.-.. -...-+--.-++-++.+++-+
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~~~~~e~~~Avdg~~l~~--~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~w~~~ 81 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKLGINFEFFDAVDGRDLSE--DELFRRYDPELFKKRYGRPLTPGEIGCALSHIKAWQRI 81 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCceEEEEeecccccch--HHHHHHhhhhhhhccccccCCcceEeehhhHHHHHHHH
Confidence 5677888999999999888876 67777776655222111 011111111110 011112222356788888888
Q ss_pred HhhCCCccEEEEeCCceEecHHHHHHHHHh
Q psy12347 118 VYNCPHVKYVFKLDDDVFMNVIQLDELLTR 147 (428)
Q Consensus 118 ~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~ 147 (428)
.+. +.++.+..+||+.++.+ +.+.|..
T Consensus 82 v~~--~~~~~lIlEDDv~~~~~-f~~~l~~ 108 (200)
T PF01755_consen 82 VDS--GLEYALILEDDVIFDPD-FKEFLEE 108 (200)
T ss_pred HHc--CCCeEEEEecccccccc-HHHHHHH
Confidence 875 58999999999999855 4444443
No 21
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=95.66 E-value=0.41 Score=44.13 Aligned_cols=188 Identities=14% Similarity=0.109 Sum_probs=89.7
Q ss_pred EEEEEEcCCCCHHHHHHHHHHhcc---cceEEEEecCCChhHHHHHHHHHhhCCCE--EEecccCcCCchh--HHHHHHH
Q psy12347 42 YLVLIHSAPYNYERRRLIRNTWGP---RVSLYFFIGETDPSNQTRLDIESETYHDI--VQGRFWDSYRNLT--YKHTMVF 114 (428)
Q Consensus 42 lli~V~S~~~~~~~R~~IR~TW~~---~~~~~F~vG~~~~~~~~~l~~E~~~~~DI--l~~d~~D~y~nlt--~K~~~~l 114 (428)
+.|+|++.-....-++.++.--.+ ...++.+...++.+..+.+.+-.+.++.. -.+... .|.- .|.. ++
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~vi~~~---~~~g~~~k~~-a~ 78 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRVIRRP---RNPGPGGKAR-AL 78 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEEEE-------HHHHHHHH-HH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEEeecC---CCCCcchHHH-HH
Confidence 556777755555555666555544 66666666444334444455555666543 222111 2232 3433 45
Q ss_pred HHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCC-----CCcccCccccCCCCC
Q psy12347 115 KWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYR-----SKWRVSFSEYRDHFY 189 (428)
Q Consensus 115 ~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~-----~kw~vs~~~y~~~~y 189 (428)
+++.+.. ..+|++.+|||+.+...-|.+.+..... ..-..+.|..........-... ..|+...... ...+
T Consensus 79 n~~~~~~-~~d~i~~lD~D~~~~p~~l~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 154 (228)
T PF13641_consen 79 NEALAAA-RGDYILFLDDDTVLDPDWLERLLAAFAD--PGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRFRSG-RRAL 154 (228)
T ss_dssp HHHHHH----SEEEEE-SSEEE-CHHHHHHHHHHHB--SS--EEEEEEEETTCCCEEEE-TT--S-EETTTS-TT--B--
T ss_pred HHHHHhc-CCCEEEEECCCcEECHHHHHHHHHHHHh--CCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhhhhh-hccc
Confidence 7777776 5999999999999998888877666521 2233333333222211100000 0111110000 0111
Q ss_pred c-CccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 190 P-PHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 190 P-~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
. .++.|++.++.++++..+-. . -+....||..+ +.-+...|....-.+
T Consensus 155 ~~~~~~G~~~~~rr~~~~~~g~---f-d~~~~~eD~~l-~~r~~~~G~~~~~~~ 203 (228)
T PF13641_consen 155 GVAFLSGSGMLFRRSALEEVGG---F-DPFILGEDFDL-CLRLRAAGWRIVYAP 203 (228)
T ss_dssp --S-B--TEEEEEHHHHHHH-S------SSSSSHHHHH-HHHHHHTT--EEEEE
T ss_pred ceeeccCcEEEEEHHHHHHhCC---C-CCCCcccHHHH-HHHHHHCCCcEEEEC
Confidence 1 45689999999999988842 1 12455699998 888888888866554
No 22
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=95.48 E-value=0.18 Score=42.97 Aligned_cols=115 Identities=14% Similarity=0.138 Sum_probs=75.5
Q ss_pred EEEEcCCCCHHHHHHHHHHhcc-cceEEEEecCCChhH-HHHHHHHHhhCCC-EEEecccCcCCchhHHHHHHHHHHHhh
Q psy12347 44 VLIHSAPYNYERRRLIRNTWGP-RVSLYFFIGETDPSN-QTRLDIESETYHD-IVQGRFWDSYRNLTYKHTMVFKWVVYN 120 (428)
Q Consensus 44 i~V~S~~~~~~~R~~IR~TW~~-~~~~~F~vG~~~~~~-~~~l~~E~~~~~D-Il~~d~~D~y~nlt~K~~~~l~w~~~~ 120 (428)
+.|.+-+...+||..+++.... ++..-|+-|...... ...+......+.. .......-+--.-.+-++.+++-+.+.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~lSH~~~w~~~~~~ 81 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQKIVES 81 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHHHHHHHHHHHHHc
Confidence 4677888899999999987776 778888877762211 1222222111000 011112222233456778888888775
Q ss_pred CCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCccccceEEe
Q psy12347 121 CPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHCHGNILLY 200 (428)
Q Consensus 121 c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~~G~~Yvl 200 (428)
+.++.+..+||+.+..+ +..||++
T Consensus 82 --~~~~alIlEDDv~~~~~------------------------------------------------------~~~~Y~v 105 (128)
T cd06532 82 --NLEYALILEDDAILDPD------------------------------------------------------GTAGYLV 105 (128)
T ss_pred --CCCeEEEEccCcEECCC------------------------------------------------------CceEEEe
Confidence 57999999999988755 4468999
Q ss_pred CHHHHHHHHHHhhc
Q psy12347 201 SPDVVFKLYQHLQT 214 (428)
Q Consensus 201 S~~~v~~l~~~~~~ 214 (428)
|+..+++|++.+..
T Consensus 106 s~~~A~~ll~~~~~ 119 (128)
T cd06532 106 SRKGAKKLLAALEP 119 (128)
T ss_pred CHHHHHHHHHhCCC
Confidence 99999999997664
No 23
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=94.95 E-value=0.44 Score=40.75 Aligned_cols=157 Identities=14% Similarity=0.152 Sum_probs=79.4
Q ss_pred EEEEcCCCCHHHH-HHHHHHhcccceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCC
Q psy12347 44 VLIHSAPYNYERR-RLIRNTWGPRVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCP 122 (428)
Q Consensus 44 i~V~S~~~~~~~R-~~IR~TW~~~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~ 122 (428)
|.+.-.+....+- +++++.-.....++.+-..++.+....+++-.+....+......+.. ++. .++..+.++.
T Consensus 4 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~----~~~n~~~~~a- 77 (169)
T PF00535_consen 4 IPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPENL-GFS----AARNRGIKHA- 77 (169)
T ss_dssp EEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCCCS-HHH----HHHHHHHHH--
T ss_pred EEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccccccccccccccccc-ccc----cccccccccc-
Confidence 3333344444443 56777733367776666555444444454444435556555555443 333 3334444443
Q ss_pred CccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcc-cccCCC---Cc-ccCc--cccCCCCCcCcccc
Q psy12347 123 HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPV-LRTYRS---KW-RVSF--SEYRDHFYPPHCHG 195 (428)
Q Consensus 123 ~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~-~R~~~~---kw-~vs~--~~y~~~~yP~y~~G 195 (428)
..+|++.+|||.++....|..++..... ......+|......... ...... .+ .... .......--.++.|
T Consensus 78 ~~~~i~~ld~D~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (169)
T PF00535_consen 78 KGEYILFLDDDDIISPDWLEELVEALEK--NPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIG 155 (169)
T ss_dssp -SSEEEEEETTEEE-TTHHHHHHHHHHH--CTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESS
T ss_pred ceeEEEEeCCCceEcHHHHHHHHHHHHh--CCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccc
Confidence 5679999999999998877666655532 23445555542221111 111000 01 1100 11112223367788
Q ss_pred ceEEeCHHHHHHH
Q psy12347 196 NILLYSPDVVFKL 208 (428)
Q Consensus 196 ~~YvlS~~~v~~l 208 (428)
++.++++++++++
T Consensus 156 ~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 156 SCALFRRSVFEEI 168 (169)
T ss_dssp SCEEEEEHHHHHC
T ss_pred cEEEEEHHHHHhh
Confidence 8999999998764
No 24
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.93 E-value=0.83 Score=39.22 Aligned_cols=86 Identities=16% Similarity=0.123 Sum_probs=57.1
Q ss_pred CccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCccccceEEeCH
Q psy12347 123 HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHCHGNILLYSP 202 (428)
Q Consensus 123 ~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~~G~~YvlS~ 202 (428)
+.+|++.+|||..+....+...+..... ...-.++++. +.|++.++++
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~~~~~--~~~~~~~~~~------------------------------~~~~~~~~~~ 121 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLDAAEQ--DPDVGIVGPK------------------------------VSGAFLLVRR 121 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHHHHHh--CCCceEEEcc------------------------------CceeeEeeeH
Confidence 6899999999999998888877765421 1111122211 6889999999
Q ss_pred HHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecCC
Q psy12347 203 DVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSW 243 (428)
Q Consensus 203 ~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~~ 243 (428)
++++.+-.-... . ....||..+ ..-+...|.+....+.
T Consensus 122 ~~~~~~~~~~~~-~-~~~~eD~~~-~~~~~~~g~~i~~~~~ 159 (166)
T cd04186 122 EVFEEVGGFDED-F-FLYYEDVDL-CLRARLAGYRVLYVPQ 159 (166)
T ss_pred HHHHHcCCCChh-h-hccccHHHH-HHHHHHcCCeEEEccc
Confidence 988876321111 1 126789988 6666677877766553
No 25
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=94.76 E-value=2.4 Score=38.26 Aligned_cols=141 Identities=11% Similarity=0.082 Sum_probs=83.7
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCC--CEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYH--DIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDE 143 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~--DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~ 143 (428)
...++++...++......+++-.+.+. ++......... ....|.- .+..+.+.+ +.+|++.+|+|+.+...-|.+
T Consensus 30 ~~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~ 106 (196)
T cd02520 30 KYEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEA-RYDILVISDSDISVPPDYLRR 106 (196)
T ss_pred CeEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhC-CCCEEEEECCCceEChhHHHH
Confidence 578888877663333445555555554 33222111110 1223433 234445554 689999999999998887877
Q ss_pred HHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcch
Q psy12347 144 LLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDD 223 (428)
Q Consensus 144 ~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eD 223 (428)
.+..... +.-. .+++. ++.|++.++.+++++++-.-. . ......||
T Consensus 107 l~~~~~~--~~~~-~v~~~-----------------------------~~~g~~~~~r~~~~~~~ggf~-~-~~~~~~eD 152 (196)
T cd02520 107 MVAPLMD--PGVG-LVTCL-----------------------------CAFGKSMALRREVLDAIGGFE-A-FADYLAED 152 (196)
T ss_pred HHHHhhC--CCCC-eEEee-----------------------------cccCceeeeEHHHHHhccChH-H-HhHHHHHH
Confidence 7765421 1111 22211 568999999999999873321 1 22234699
Q ss_pred hhhHHHHHHhcCCceeecCCC
Q psy12347 224 VFITGIVFSKLNLTHAKFSWW 244 (428)
Q Consensus 224 v~itG~~~~~~~i~~~~~~~~ 244 (428)
..+ +.-+...|.+....+..
T Consensus 153 ~~l-~~rl~~~G~~i~~~~~~ 172 (196)
T cd02520 153 YFL-GKLIWRLGYRVVLSPYV 172 (196)
T ss_pred HHH-HHHHHHcCCeEEEcchh
Confidence 998 77777888877655543
No 26
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.48 E-value=0.93 Score=45.90 Aligned_cols=190 Identities=11% Similarity=0.051 Sum_probs=100.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc---cceEEEEecCCChhHHHHHHHHHhhCCC--EEEecccCcCCchhHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP---RVSLYFFIGETDPSNQTRLDIESETYHD--IVQGRFWDSYRNLTYKHTMVFK 115 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~---~~~~~F~vG~~~~~~~~~l~~E~~~~~D--Il~~d~~D~y~nlt~K~~~~l~ 115 (428)
.+-|+|++.-....-.+.++.-=.+ ...++++...++......+++=.++|.+ |.... ...-.....|.-.+.+
T Consensus 42 ~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K~~~l~~ 120 (373)
T TIGR03472 42 PVSVLKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFPDADIDLVI-DARRHGPNRKVSNLIN 120 (373)
T ss_pred CeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEEE-CCCCCCCChHHHHHHH
Confidence 5777777655544444444332222 5777777766633223334333456666 32221 1111223356655444
Q ss_pred HHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCC--------CCcccCccc-cCC
Q psy12347 116 WVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYR--------SKWRVSFSE-YRD 186 (428)
Q Consensus 116 w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~--------~kw~vs~~~-y~~ 186 (428)
+.+.+ +.++++.+|+|+.+..+-|.+.+..... +.-. +.++. ....+ ..... ..++.+... ...
T Consensus 121 -~~~~a-~ge~i~~~DaD~~~~p~~L~~lv~~~~~--~~v~-~V~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~ 193 (373)
T TIGR03472 121 -MLPHA-RHDILVIADSDISVGPDYLRQVVAPLAD--PDVG-LVTCL-YRGRP-VPGFWSRLGAMGINHNFLPSVMVARA 193 (373)
T ss_pred -HHHhc-cCCEEEEECCCCCcChhHHHHHHHHhcC--CCcc-eEecc-ccCCC-CCCHHHHHHHHHhhhhhhHHHHHHHh
Confidence 44554 7999999999999998888877766521 1112 23332 11111 00000 011111100 000
Q ss_pred CCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeec
Q psy12347 187 HFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 241 (428)
Q Consensus 187 ~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~ 241 (428)
..-+.+|.|+++++.+++.+.+---.. ....-.||+.+ |.-+.+.|.+..-.
T Consensus 194 ~~~~~~~~G~~~a~RR~~l~~iGGf~~--~~~~~~ED~~l-~~~i~~~G~~v~~~ 245 (373)
T TIGR03472 194 LGRARFCFGATMALRRATLEAIGGLAA--LAHHLADDYWL-GELVRALGLRVVLA 245 (373)
T ss_pred ccCCccccChhhheeHHHHHHcCChHH--hcccchHHHHH-HHHHHHcCCeEEec
Confidence 011356889999999999998743222 12223599998 88888888876543
No 27
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.23 E-value=1.9 Score=38.85 Aligned_cols=157 Identities=11% Similarity=0.089 Sum_probs=77.1
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCC-CEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYH-DIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDEL 144 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~-DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~ 144 (428)
.+.++++-..+.......+++-.++++ .+.......+ ..... .+......+ +.+|++..|+|..+....|.++
T Consensus 27 ~~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~-~G~~~----~~n~g~~~~-~g~~v~~ld~Dd~~~~~~l~~~ 100 (214)
T cd04196 27 NDELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKN-LGVAR----NFESLLQAA-DGDYVFFCDQDDIWLPDKLERL 100 (214)
T ss_pred CeEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCC-ccHHH----HHHHHHHhC-CCCEEEEECCCcccChhHHHHH
Confidence 566777765553333344444444553 2333322221 12222 222333444 6899999999999988888877
Q ss_pred HHhccCCCCCcceEEEEEee-cC-Cccccc-CC-CCcccCccccCCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCC
Q psy12347 145 LTRTLSPHGTRNLLMCSIVW-EK-SPVLRT-YR-SKWRVSFSEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFW 220 (428)
Q Consensus 145 L~~~~~~~~~~~~~~g~~~~-~~-~~~~R~-~~-~kw~vs~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~ 220 (428)
+..... ......+.|.... .. ...... .. ...+.+...+.......++.|++.++.+++++++..-... ...
T Consensus 101 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~---~~~ 176 (214)
T cd04196 101 LKAFLK-DDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSFNNLLFQNVVTGCTMAFNRELLELALPFPDA---DVI 176 (214)
T ss_pred HHHHhc-CCCceEEecCcEEECCCCCCcccccccccccCCccCHHHHHHhCccCCceeeEEHHHHHhhcccccc---ccc
Confidence 776221 0222333333211 11 111110 00 0000000011111223566788999999999887442221 156
Q ss_pred cchhhhHHHHHHh
Q psy12347 221 VDDVFITGIVFSK 233 (428)
Q Consensus 221 ~eDv~itG~~~~~ 233 (428)
.||.++ .+.+..
T Consensus 177 ~~D~~~-~~~~~~ 188 (214)
T cd04196 177 MHDWWL-ALLASA 188 (214)
T ss_pred cchHHH-HHHHHH
Confidence 889887 555544
No 28
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=93.80 E-value=2.9 Score=38.66 Aligned_cols=165 Identities=9% Similarity=-0.075 Sum_probs=84.9
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL 145 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L 145 (428)
...++.+-+.+..+....++...+++..+....-.. .. + -.+++...+.. +.+|++.+|+|..+...-|.+.+
T Consensus 31 ~~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~----~~-~-~~a~N~g~~~a-~~d~v~~lD~D~~~~~~~l~~~~ 103 (249)
T cd02525 31 LIEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPK----RI-Q-SAGLNIGIRNS-RGDIIIRVDAHAVYPKDYILELV 103 (249)
T ss_pred ccEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCC----CC-c-hHHHHHHHHHh-CCCEEEEECCCccCCHHHHHHHH
Confidence 456666655554344455555555444444433221 11 1 13455555554 68999999999999888787777
Q ss_pred HhccCCCCCcceEEEEEeecCCcccc-----cCCCCcccCccccCC--CCCcCccccceEEeCHHHHHHHHHHhhccCCC
Q psy12347 146 TRTLSPHGTRNLLMCSIVWEKSPVLR-----TYRSKWRVSFSEYRD--HFYPPHCHGNILLYSPDVVFKLYQHLQTDQEY 218 (428)
Q Consensus 146 ~~~~~~~~~~~~~~g~~~~~~~~~~R-----~~~~kw~vs~~~y~~--~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~ 218 (428)
..... .......|........... ...+.+......+.. ...-.++.|++.++++++++++-- .. ..+
T Consensus 104 ~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~-~~~ 178 (249)
T cd02525 104 EALKR--TGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRGGAVKIGYVDTVHHGAYRREVFEKVGG--FD-ESL 178 (249)
T ss_pred HHHhc--CCCCEEecceecCCCChHHHHHHHHhhchhccCCccccccccccccccccccceEEHHHHHHhCC--CC-ccc
Confidence 65422 1222233332111111110 000000000000000 000114567778889998877632 11 234
Q ss_pred CCcchhhhHHHHHHhcCCceeecCC
Q psy12347 219 FWVDDVFITGIVFSKLNLTHAKFSW 243 (428)
Q Consensus 219 ~~~eDv~itG~~~~~~~i~~~~~~~ 243 (428)
...||..+ +.-+...|......+.
T Consensus 179 ~~~eD~~l-~~r~~~~G~~~~~~~~ 202 (249)
T cd02525 179 VRNEDAEL-NYRLRKAGYKIWLSPD 202 (249)
T ss_pred CccchhHH-HHHHHHcCcEEEEcCC
Confidence 45799998 7777788888776654
No 29
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.23 E-value=6.2 Score=40.10 Aligned_cols=190 Identities=9% Similarity=0.047 Sum_probs=97.1
Q ss_pred cEEEEEEcCCCCHHHHHHHH----HHhcccceEEEEecCCChhHHHHHHHHHhhCC---CEEEecccCcCCchhHHH---
Q psy12347 41 VYLVLIHSAPYNYERRRLIR----NTWGPRVSLYFFIGETDPSNQTRLDIESETYH---DIVQGRFWDSYRNLTYKH--- 110 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR----~TW~~~~~~~F~vG~~~~~~~~~l~~E~~~~~---DIl~~d~~D~y~nlt~K~--- 110 (428)
.+-|+|.+.-+...-.+.++ +++.....++++-..+.....+.+++-.+++. .+......+.-.+-..|.
T Consensus 41 ~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~ 120 (384)
T TIGR03469 41 AVVAVVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAV 120 (384)
T ss_pred CEEEEEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHH
Confidence 56677776444333333333 33322456776666552222223332233343 344443222112223453
Q ss_pred HHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccC------cccc
Q psy12347 111 TMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVS------FSEY 184 (428)
Q Consensus 111 ~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs------~~~y 184 (428)
-.+++.+.+.+++.+|++.+|+|+.+..+.|.+.+..... .... +.++...... .....+...+ ...+
T Consensus 121 n~g~~~A~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~--~~~~-~vs~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 194 (384)
T TIGR03469 121 SQGIAAARTLAPPADYLLLTDADIAHGPDNLARLVARARA--EGLD-LVSLMVRLRC---ESFWEKLLIPAFVFFFQKLY 194 (384)
T ss_pred HHHHHHHhccCCCCCEEEEECCCCCCChhHHHHHHHHHHh--CCCC-EEEecccccC---CCHHHHHHHHHHHHHHHHhc
Confidence 3466666666656899999999999998888887766532 1122 3333311100 0000000000 0000
Q ss_pred C------CCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCcee
Q psy12347 185 R------DHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHA 239 (428)
Q Consensus 185 ~------~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~ 239 (428)
+ .......+.|++.++++++.+++--.... .....||+.+ +.-+.+.|....
T Consensus 195 ~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~--~~~~~ED~~L-~~r~~~~G~~v~ 252 (384)
T TIGR03469 195 PFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAI--RGALIDDCTL-AAAVKRSGGRIW 252 (384)
T ss_pred chhhhcCCCccceeecceEEEEEHHHHHHcCCHHHH--hhCcccHHHH-HHHHHHcCCcEE
Confidence 0 01123456799999999999988322211 1235799998 777777775543
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.82 E-value=1.9 Score=39.29 Aligned_cols=160 Identities=10% Similarity=0.064 Sum_probs=80.8
Q ss_pred ceEEEEecCCChhHHHHHHHHHhh--CCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHH
Q psy12347 67 VSLYFFIGETDPSNQTRLDIESET--YHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDEL 144 (428)
Q Consensus 67 ~~~~F~vG~~~~~~~~~l~~E~~~--~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~ 144 (428)
+.++.+-..+.......+. +... +..+....... -.|. .|. .++++..+.+ ..+|++.+|+|..+..+-|.+.
T Consensus 29 ~eiivvdd~s~d~t~~~~~-~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~-~~d~i~~~D~D~~~~~~~l~~l 103 (229)
T cd04192 29 FEVILVDDHSTDGTVQILE-FAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAA-KGDWIVTTDADCVVPSNWLLTF 103 (229)
T ss_pred eEEEEEcCCCCcChHHHHH-HHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHh-cCCEEEEECCCcccCHHHHHHH
Confidence 5666665555333333444 2322 33445554433 1222 232 3355666665 6899999999999988777777
Q ss_pred HHhccCCCCCcceEEEEEeecCCc-cc-ccCCCCcccCc---cccCCCCCcCccccceEEeCHHHHHHHHHHhhccCCCC
Q psy12347 145 LTRTLSPHGTRNLLMCSIVWEKSP-VL-RTYRSKWRVSF---SEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYF 219 (428)
Q Consensus 145 L~~~~~~~~~~~~~~g~~~~~~~~-~~-R~~~~kw~vs~---~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~ 219 (428)
+..... .....+.|........ .. +-..-.+.... .......+|..+.|+++++++++++++--- .. ....
T Consensus 104 ~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf-~~-~~~~ 179 (229)
T cd04192 104 VAFIQK--EQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGF-EG-NDHI 179 (229)
T ss_pred HHHhhc--CCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCC-cc-cccc
Confidence 764422 2233444544221000 00 00000000000 001223356677899999999999887332 11 2234
Q ss_pred CcchhhhHHHHHHhcCC
Q psy12347 220 WVDDVFITGIVFSKLNL 236 (428)
Q Consensus 220 ~~eDv~itG~~~~~~~i 236 (428)
..||..+ +.-+...|.
T Consensus 180 ~~eD~~~-~~~~~~~g~ 195 (229)
T cd04192 180 ASGDDEL-LLAKVASKY 195 (229)
T ss_pred ccCCHHH-HHHHHHhCC
Confidence 5677766 554445454
No 31
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=92.54 E-value=1.9 Score=36.67 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=43.0
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCC-EEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHD-IVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDEL 144 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~D-Il~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~ 144 (428)
...++.+-..++......+.++...+.- ++..... .|.. .-..++++.+.+ +.+|++.+|+|..+....|.+.
T Consensus 26 ~~~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~---~~~g--~~~~~n~~~~~~-~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 26 KLEVIVVDDGSTDDTLEILEELAALYIRRVLVVRDK---ENGG--KAGALNAGLRHA-KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred ceEEEEEeCCCccchHHHHHHHhccccceEEEEEec---ccCC--chHHHHHHHHhc-CCCEEEEECCCCCcChHHHHHH
Confidence 4555555444433344445544444322 2222211 1211 234555666665 7999999999999987777776
Q ss_pred HHhc
Q psy12347 145 LTRT 148 (428)
Q Consensus 145 L~~~ 148 (428)
+...
T Consensus 100 ~~~~ 103 (180)
T cd06423 100 VVPF 103 (180)
T ss_pred HHHh
Confidence 4544
No 32
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=92.28 E-value=6.5 Score=35.29 Aligned_cols=138 Identities=15% Similarity=0.058 Sum_probs=73.9
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL 145 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L 145 (428)
...++.+-+.+.......+++..+.++ +...... .......-.-.+++++. ..+.+|++..|+|..+..+.+.+++
T Consensus 26 ~~eiiivD~~s~d~t~~~~~~~~~~~~-i~~~~~~-~n~g~~~~~n~~~~~a~--~~~~d~v~~ld~D~~~~~~~l~~l~ 101 (202)
T cd04185 26 PDHIIVIDNASTDGTAEWLTSLGDLDN-IVYLRLP-ENLGGAGGFYEGVRRAY--ELGYDWIWLMDDDAIPDPDALEKLL 101 (202)
T ss_pred CceEEEEECCCCcchHHHHHHhcCCCc-eEEEECc-cccchhhHHHHHHHHHh--ccCCCEEEEeCCCCCcChHHHHHHH
Confidence 345555544443334444444444433 3222222 12222333344566665 3368999999999999988777666
Q ss_pred HhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhh
Q psy12347 146 TRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVF 225 (428)
Q Consensus 146 ~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~ 225 (428)
..... ..-..+.|.. .... + .++|.++.+++++++--. .. .-+...||+.
T Consensus 102 ~~~~~--~~~~~~~~~~-~~~~-------~------------------~~~~~~~~~~~~~~~g~~-~~-~~~~~~eD~~ 151 (202)
T cd04185 102 AYADK--DNPQFLAPLV-LDPD-------G------------------SFVGVLISRRVVEKIGLP-DK-EFFIWGDDTE 151 (202)
T ss_pred HHHhc--CCceEeccee-EcCC-------C------------------ceEEEEEeHHHHHHhCCC-Ch-hhhccchHHH
Confidence 55521 1112222222 1110 0 345678999888876311 11 1124569999
Q ss_pred hHHHHHHhcCCce
Q psy12347 226 ITGIVFSKLNLTH 238 (428)
Q Consensus 226 itG~~~~~~~i~~ 238 (428)
+ +.-+...|...
T Consensus 152 ~-~~r~~~~G~~i 163 (202)
T cd04185 152 Y-TLRASKAGPGI 163 (202)
T ss_pred H-HHHHHHcCCcE
Confidence 8 77777778766
No 33
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=91.84 E-value=8.5 Score=33.91 Aligned_cols=122 Identities=7% Similarity=-0.087 Sum_probs=69.1
Q ss_pred HHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcC
Q psy12347 112 MVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPP 191 (428)
Q Consensus 112 ~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~ 191 (428)
.+++.+.+++ +.+|++.+|+|..+..+.+.+.+..... ......+.|............ ..+..............
T Consensus 65 ~a~n~~~~~a-~~~~v~~ld~D~~~~~~~~~~~~~~~~~-~~~~~~v~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 140 (202)
T cd06433 65 DAMNKGIALA-TGDIIGFLNSDDTLLPGALLAVVAAFAE-HPEVDVVYGDVLLVDENGRVI--GRRRPPPFLDKFLLYGM 140 (202)
T ss_pred HHHHHHHHHc-CCCEEEEeCCCcccCchHHHHHHHHHHh-CCCccEEEeeeEEEcCCCCcc--cCCCCcchhhhHHhhcC
Confidence 4456666666 6899999999999999888888733321 123445555542211111110 01111111112223345
Q ss_pred ccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeec
Q psy12347 192 HCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 241 (428)
Q Consensus 192 y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~ 241 (428)
++.|++.++++++++.+-. .. ..+...+|..+ ..-+...|......
T Consensus 141 ~~~~~~~~~~~~~~~~~~~--f~-~~~~~~~D~~~-~~r~~~~g~~~~~~ 186 (202)
T cd06433 141 PICHQATFFRRSLFEKYGG--FD-ESYRIAADYDL-LLRLLLAGKIFKYL 186 (202)
T ss_pred cccCcceEEEHHHHHHhCC--Cc-hhhCchhhHHH-HHHHHHcCCceEec
Confidence 6678889999999988742 11 22334578887 55566667665443
No 34
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=91.77 E-value=0.94 Score=40.82 Aligned_cols=127 Identities=13% Similarity=0.052 Sum_probs=76.5
Q ss_pred hHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCC---Cccc--Cc
Q psy12347 107 TYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRS---KWRV--SF 181 (428)
Q Consensus 107 t~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~---kw~v--s~ 181 (428)
..|+-.++.-+.. -.+.++++..|+|+.++.+-|.+.+..... ++--+..++ ....+ .+...+ .-++ ..
T Consensus 16 N~Kv~nL~~~~~~-~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~---p~vglVt~~-~~~~~-~~~~~~~l~~~~~~~~~ 89 (175)
T PF13506_consen 16 NPKVNNLAQGLEA-GAKYDYLVISDSDIRVPPDYLRELVAPLAD---PGVGLVTGL-PRGVP-ARGFWSRLEAAFFNFLP 89 (175)
T ss_pred ChHHHHHHHHHHh-hCCCCEEEEECCCeeECHHHHHHHHHHHhC---CCCcEEEec-ccccC-CcCHHHHHHHHHHhHHH
Confidence 4566555555544 247999999999999999998888877632 122233333 11111 111000 0011 00
Q ss_pred cccCCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 182 SEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 182 ~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
..+....-.++|-|+++++.+++++++--- .. ....--||..+ |..+...|.+..-.+
T Consensus 90 ~~~~a~~~~~~~~G~~m~~rr~~L~~~GG~-~~-l~~~ladD~~l-~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 90 GVLQALGGAPFAWGGSMAFRREALEEIGGF-EA-LADYLADDYAL-GRRLRARGYRVVLSP 147 (175)
T ss_pred HHHHHhcCCCceecceeeeEHHHHHHcccH-HH-HhhhhhHHHHH-HHHHHHCCCeEEEcc
Confidence 001111246889999999999999987211 11 22355899998 999999999877665
No 35
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=91.68 E-value=4.4 Score=38.04 Aligned_cols=188 Identities=11% Similarity=0.061 Sum_probs=94.7
Q ss_pred cEEEEEEcCCCCHHHHH---HHHHHhcc--cceEEEEecCCChhHHHHHHHHHhhCCC--EEEecccCcCCchhHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRR---LIRNTWGP--RVSLYFFIGETDPSNQTRLDIESETYHD--IVQGRFWDSYRNLTYKHTMV 113 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~---~IR~TW~~--~~~~~F~vG~~~~~~~~~l~~E~~~~~D--Il~~d~~D~y~nlt~K~~~~ 113 (428)
.+-|+|++--....-.. .+++.-.. .+.++++-..+.....+.+++-.++|++ +...... .|.. | -.+
T Consensus 10 ~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiivvDdgS~D~t~~i~~~~~~~~~~~~v~~~~~~---~n~G-~-~~a 84 (243)
T PLN02726 10 KYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIVVDDGSPDGTQDVVKQLQKVYGEDRILLRPRP---GKLG-L-GTA 84 (243)
T ss_pred eEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEEEeCCCCCCHHHHHHHHHHhcCCCcEEEEecC---CCCC-H-HHH
Confidence 56677766432222222 34443322 5677777665533334444444455543 2222211 1221 1 124
Q ss_pred HHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcc-----cccCCCCc--ccCccccCC
Q psy12347 114 FKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPV-----LRTYRSKW--RVSFSEYRD 186 (428)
Q Consensus 114 l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~-----~R~~~~kw--~vs~~~y~~ 186 (428)
++...... +.+|++.+|.|..+.++.|.+++..... ...+.++|......... .|.-.++. ++..... .
T Consensus 85 ~n~g~~~a-~g~~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~~~~-~ 160 (243)
T PLN02726 85 YIHGLKHA-SGDFVVIMDADLSHHPKYLPSFIKKQRE--TGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQTLL-W 160 (243)
T ss_pred HHHHHHHc-CCCEEEEEcCCCCCCHHHHHHHHHHHHh--cCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHHHHh-C
Confidence 44444443 5899999999999999888887765522 23455555431111110 11100000 0000011 1
Q ss_pred CCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 187 HFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 187 ~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
... ..++|++.++++++++.+...... . . ...|..+ .+.+...|.+....|
T Consensus 161 ~~~-~d~~g~~~~~rr~~~~~i~~~~~~-~-~-~~~~~el-~~~~~~~g~~i~~vp 211 (243)
T PLN02726 161 PGV-SDLTGSFRLYKRSALEDLVSSVVS-K-G-YVFQMEI-IVRASRKGYRIEEVP 211 (243)
T ss_pred CCC-CcCCCcccceeHHHHHHHHhhccC-C-C-cEEehHH-HHHHHHcCCcEEEeC
Confidence 111 235777889999999999653332 2 2 2235555 666777888777665
No 36
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=91.15 E-value=6 Score=36.22 Aligned_cols=188 Identities=11% Similarity=0.010 Sum_probs=91.9
Q ss_pred EEEEEEcCCCCH-HHHHHH----HHHhcc-cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHH
Q psy12347 42 YLVLIHSAPYNY-ERRRLI----RNTWGP-RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFK 115 (428)
Q Consensus 42 lli~V~S~~~~~-~~R~~I----R~TW~~-~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~ 115 (428)
+-|+|++.-... ..++.+ .+++.. .+.++++-..++......++.-..++ .+...... .|.-.|.- .+.
T Consensus 3 vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~~-~~~~~~~~---~~~~~~~~-~~n 77 (234)
T cd06421 3 VDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELGVEY-GYRYLTRP---DNRHAKAG-NLN 77 (234)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhhccc-CceEEEeC---CCCCCcHH-HHH
Confidence 345566544332 233333 234433 26777765544333333333322222 33322221 22222322 234
Q ss_pred HHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEE-eecCCcc----cccCC--CCcccCccccC-CC
Q psy12347 116 WVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSI-VWEKSPV----LRTYR--SKWRVSFSEYR-DH 187 (428)
Q Consensus 116 w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~-~~~~~~~----~R~~~--~kw~vs~~~y~-~~ 187 (428)
.+.+.. +.+|++.+|+|+++..+.|.+++..... +..-...++. ....... .+... ...+....... ..
T Consensus 78 ~~~~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (234)
T cd06421 78 NALAHT-TGDFVAILDADHVPTPDFLRRTLGYFLD--DPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDR 154 (234)
T ss_pred HHHHhC-CCCEEEEEccccCcCccHHHHHHHHHhc--CCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhh
Confidence 444443 6899999999999998888777766531 1221222222 1111110 11000 00000000000 01
Q ss_pred CCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 188 FYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 188 ~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
....++.|++.++++++++++-.- ......||..+ +.-+...|......+
T Consensus 155 ~~~~~~~g~~~~~r~~~~~~ig~~----~~~~~~eD~~l-~~r~~~~g~~i~~~~ 204 (234)
T cd06421 155 WGAAFCCGSGAVVRREALDEIGGF----PTDSVTEDLAT-SLRLHAKGWRSVYVP 204 (234)
T ss_pred cCCceecCceeeEeHHHHHHhCCC----CccceeccHHH-HHHHHHcCceEEEec
Confidence 124567899999999999887321 12344799998 877778887765444
No 37
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=91.01 E-value=10 Score=35.34 Aligned_cols=184 Identities=9% Similarity=-0.009 Sum_probs=89.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc-----cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP-----RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFK 115 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~-----~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~ 115 (428)
.+-|+|++.-....-...++.-..+ ...++++...++......+.+..++ .+......+ |. .|. .+++
T Consensus 30 ~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~~--~v~~i~~~~---~~-g~~-~a~n 102 (251)
T cd06439 30 TVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREYADK--GVKLLRFPE---RR-GKA-AALN 102 (251)
T ss_pred EEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHHhhC--cEEEEEcCC---CC-ChH-HHHH
Confidence 6777777755554445555555554 2456555544433333333332222 343332222 21 232 3445
Q ss_pred HHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcc-cccCCCCcccCc--cccC-CCCCcC
Q psy12347 116 WVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPV-LRTYRSKWRVSF--SEYR-DHFYPP 191 (428)
Q Consensus 116 w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~-~R~~~~kw~vs~--~~y~-~~~yP~ 191 (428)
...+.. +.+|++.+|+|+.+..+-|.+.+..... ..-..+.|......... .+.....|.... ..+. ....+.
T Consensus 103 ~gi~~a-~~d~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (251)
T cd06439 103 RALALA-TGEIVVFTDANALLDPDALRLLVRHFAD--PSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAESRLGSTV 179 (251)
T ss_pred HHHHHc-CCCEEEEEccccCcCHHHHHHHHHHhcC--CCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHHHhcCCee
Confidence 555554 5699999999999997777777766532 12233333331111110 000000111000 0000 011233
Q ss_pred ccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 192 HCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 192 y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
.+.|+++++.+++.. .. ......||..+ +..+...|......+
T Consensus 180 ~~~g~~~~~rr~~~~------~~-~~~~~~eD~~l-~~~~~~~G~~~~~~~ 222 (251)
T cd06439 180 GANGAIYAIRRELFR------PL-PADTINDDFVL-PLRIARQGYRVVYEP 222 (251)
T ss_pred eecchHHHhHHHHhc------CC-CcccchhHHHH-HHHHHHcCCeEEecc
Confidence 456666666666555 11 22344699988 777777787665554
No 38
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=90.22 E-value=19 Score=34.93 Aligned_cols=124 Identities=15% Similarity=0.102 Sum_probs=65.5
Q ss_pred HHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecC-C-cc--------ccc-----CCCCc
Q psy12347 113 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEK-S-PV--------LRT-----YRSKW 177 (428)
Q Consensus 113 ~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~-~-~~--------~R~-----~~~kw 177 (428)
+.+...+.. ..+|++..|+|+.+...-|.+++..... .+..+.|+.+... . .. .+. ....|
T Consensus 74 a~N~g~~~A-~gd~i~fLD~D~~~~~~wL~~ll~~l~~---~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (299)
T cd02510 74 ARIAGARAA-TGDVLVFLDSHCEVNVGWLEPLLARIAE---NRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKW 149 (299)
T ss_pred HHHHHHHHc-cCCEEEEEeCCcccCccHHHHHHHHHHh---CCCeEEEeeeccccCCCeeEecCCCceeEEecccceecc
Confidence 344444444 6899999999999987777777765532 2223444321110 0 00 000 00112
Q ss_pred ccCccc-----cC-CCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 178 RVSFSE-----YR-DHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 178 ~vs~~~-----y~-~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
...... .+ ....-++++|++.++++++...+-.--.. ......||+-+ .+=+...|-+....+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~-~~~~~~ED~Dl-~~R~~~~G~~i~~~p 218 (299)
T cd02510 150 LPLPEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEG-MDIWGGENLEL-SFKVWQCGGSIEIVP 218 (299)
T ss_pred ccCCHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCc-ccccCchhHHH-HHHHHHcCCeEEEee
Confidence 111000 01 11233567899999999999887322122 22223699988 555556776654443
No 39
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=90.01 E-value=4.4 Score=35.77 Aligned_cols=136 Identities=14% Similarity=0.038 Sum_probs=70.7
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL 145 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L 145 (428)
.+.++.+-+.+.......++...+++..+....... |.- | -.+++....++ ..+|++.+|+|.......|.+.+
T Consensus 29 ~~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~---n~G-~-~~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~l~ 102 (181)
T cd04187 29 DYEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSR---NFG-Q-QAALLAGLDHA-RGDAVITMDADLQDPPELIPEML 102 (181)
T ss_pred CeEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecC---CCC-c-HHHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHH
Confidence 566666665553333444555555666565544433 221 2 23444444444 47999999999999877777766
Q ss_pred HhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCccccceEEeCHHHHHHHHH
Q psy12347 146 TRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPHCHGNILLYSPDVVFKLYQ 210 (428)
Q Consensus 146 ~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~ 210 (428)
.... ...+..+|..........+...++.+...........-+...|+..++++++++.+..
T Consensus 103 ~~~~---~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 103 AKWE---EGYDVVYGVRKNRKESWLKRLTSKLFYRLINKLSGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHh---CCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 6542 2345555554211111111000111100000001112245567889999999998864
No 40
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=89.47 E-value=6.7 Score=36.05 Aligned_cols=98 Identities=16% Similarity=0.102 Sum_probs=54.0
Q ss_pred EEEEEcCCCC-HHHHHHHHHHhcc-cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhh
Q psy12347 43 LVLIHSAPYN-YERRRLIRNTWGP-RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYN 120 (428)
Q Consensus 43 li~V~S~~~~-~~~R~~IR~TW~~-~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~ 120 (428)
-|+|++.-.. ......|+.-=.+ ...++++...++.+....+ ++...+..+....- +. ..|..+ +......
T Consensus 3 sVvIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l-~~~~~~~~~~v~~~-~~----~g~~~a-~n~g~~~ 75 (235)
T cd06434 3 TVIIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSIL-SQTVKYGGIFVITV-PH----PGKRRA-LAEGIRH 75 (235)
T ss_pred EEEEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHH-HhhccCCcEEEEec-CC----CChHHH-HHHHHHH
Confidence 3555554333 2233333322222 5666666555533333333 34556666665542 11 223322 2333333
Q ss_pred CCCccEEEEeCCceEecHHHHHHHHHhc
Q psy12347 121 CPHVKYVFKLDDDVFMNVIQLDELLTRT 148 (428)
Q Consensus 121 c~~~~~vlk~DDD~~vn~~~L~~~L~~~ 148 (428)
. ..+|++.+|+|+.+..+.|.+.+...
T Consensus 76 a-~~d~v~~lD~D~~~~~~~l~~l~~~~ 102 (235)
T cd06434 76 V-TTDIVVLLDSDTVWPPNALPEMLKPF 102 (235)
T ss_pred h-CCCEEEEECCCceeChhHHHHHHHhc
Confidence 2 78999999999999999988888766
No 41
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=88.61 E-value=16 Score=33.58 Aligned_cols=119 Identities=10% Similarity=0.024 Sum_probs=68.2
Q ss_pred HHHHHHHhhCC-CccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccC------cccc
Q psy12347 112 MVFKWVVYNCP-HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVS------FSEY 184 (428)
Q Consensus 112 ~~l~w~~~~c~-~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs------~~~y 184 (428)
.++.++.+.+. +.+|++..|+|+.+..+.|.+++..... ..--++++. ...++....++.. ...+
T Consensus 72 ~a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~---~~~~~v~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 143 (236)
T cd06435 72 GALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFDD---PRVGFVQAP-----QDYRDGEESLFKRMCYAEYKGFF 143 (236)
T ss_pred HHHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhcC---CCeeEEecC-----ccccCCCccHHHHHHhHHHHHHH
Confidence 35677777664 4799999999999999888888776521 111122221 0011111111100 0000
Q ss_pred -----CCCCC-cCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecCC
Q psy12347 185 -----RDHFY-PPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSW 243 (428)
Q Consensus 185 -----~~~~y-P~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~~ 243 (428)
..... -.+++|++.+++++++..+-- . -+.+..||+-+ +.=+...|....-.+.
T Consensus 144 ~~~~~~~~~~~~~~~~g~~~~~rr~~~~~iGg---f-~~~~~~eD~dl-~~r~~~~G~~~~~~~~ 203 (236)
T cd06435 144 DIGMVSRNERNAIIQHGTMCLIRRSALDDVGG---W-DEWCITEDSEL-GLRMHEAGYIGVYVAQ 203 (236)
T ss_pred HHHhccccccCceEEecceEEEEHHHHHHhCC---C-CCccccchHHH-HHHHHHCCcEEEEcch
Confidence 00000 125678889999999988732 1 11235799998 7777788887666553
No 42
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=88.28 E-value=16 Score=34.09 Aligned_cols=123 Identities=11% Similarity=0.015 Sum_probs=68.6
Q ss_pred HHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEE-EEEeecCCcccccCCCCcccC------cccc
Q psy12347 112 MVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLM-CSIVWEKSPVLRTYRSKWRVS------FSEY 184 (428)
Q Consensus 112 ~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~-g~~~~~~~~~~R~~~~kw~vs------~~~y 184 (428)
.+++...++. +.+|++.+|+|+.+..+.|.+.+..... ...+..+ |+.+...... .....+.+.. ....
T Consensus 74 ~a~n~g~~~a-~gd~i~~~DaD~~~~~~~l~~~~~~~~~--~~~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 149 (241)
T cd06427 74 KACNYALAFA-RGEYVVIYDAEDAPDPDQLKKAVAAFAR--LDDKLACVQAPLNYYNAR-ENWLTRMFALEYAAWFDYLL 149 (241)
T ss_pred HHHHHHHHhc-CCCEEEEEcCCCCCChHHHHHHHHHHHh--cCCCEEEEeCceEeeCCC-ccHHHHHHHHHHHHHHHHHH
Confidence 4566666664 6799999999999999999888876631 1123222 2221111100 0000011000 0000
Q ss_pred C---CCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecCC
Q psy12347 185 R---DHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSW 243 (428)
Q Consensus 185 ~---~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~~ 243 (428)
+ ....+..++|++.++++++++.+-. . .+....||..+ ++-+...|.+....+.
T Consensus 150 ~~~~~~~~~~~~~g~~~~~rr~~~~~vgg---~-~~~~~~eD~~l-~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 150 PGLARLGLPIPLGGTSNHFRTDVLRELGG---W-DPFNVTEDADL-GLRLARAGYRTGVLNS 206 (241)
T ss_pred HHHHhcCCeeecCCchHHhhHHHHHHcCC---C-CcccchhhHHH-HHHHHHCCceEEEecc
Confidence 1 1123345678888889998887632 1 12234699998 7777777877666654
No 43
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.24 E-value=22 Score=36.36 Aligned_cols=183 Identities=10% Similarity=0.020 Sum_probs=97.5
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc---cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP---RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWV 117 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~---~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~ 117 (428)
.+-|+|++.-+...-++.++.--.+ ...++.+-..++++..+.+++..+++..+...+.. .|.. | -.+++..
T Consensus 55 ~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~---~n~G-k-a~aln~g 129 (420)
T PRK11204 55 GVSILVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLAAQIPRLRVIHLA---ENQG-K-ANALNTG 129 (420)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHHHhCCcEEEEEcC---CCCC-H-HHHHHHH
Confidence 6777787755543334433332222 34444333333444455566666666666555433 2332 4 3445666
Q ss_pred HhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccC--ccccCC---------
Q psy12347 118 VYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVS--FSEYRD--------- 186 (428)
Q Consensus 118 ~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs--~~~y~~--------- 186 (428)
.+++ +.+|++..|+|+.+..+.|.+.+..... .++-...++. +..++.. .|... ..+|..
T Consensus 130 ~~~a-~~d~i~~lDaD~~~~~d~L~~l~~~~~~--~~~v~~v~g~-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 200 (420)
T PRK11204 130 AAAA-RSEYLVCIDGDALLDPDAAAYMVEHFLH--NPRVGAVTGN-----PRIRNRS-TLLGRIQVGEFSSIIGLIKRAQ 200 (420)
T ss_pred HHHc-CCCEEEEECCCCCCChhHHHHHHHHHHh--CCCeEEEECC-----ceeccch-hHHHHHHHHHHHHhhhHHHHHH
Confidence 6665 7899999999999999888877766521 1111122221 1111111 01000 000100
Q ss_pred CC--CcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 187 HF--YPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 187 ~~--yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
.. .+..++|.+.++.+++++++-- - .+..-.||+.+ +.-+...|.+..-.+
T Consensus 201 ~~~~~~~~~~G~~~~~rr~~l~~vgg---~-~~~~~~ED~~l-~~rl~~~G~~i~~~p 253 (420)
T PRK11204 201 RVYGRVFTVSGVITAFRKSALHEVGY---W-STDMITEDIDI-SWKLQLRGWDIRYEP 253 (420)
T ss_pred HHhCCceEecceeeeeeHHHHHHhCC---C-CCCcccchHHH-HHHHHHcCCeEEecc
Confidence 01 1223478888999998877521 1 12234699998 887888888765554
No 44
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=87.92 E-value=1 Score=42.85 Aligned_cols=51 Identities=14% Similarity=0.042 Sum_probs=39.7
Q ss_pred ccceEEeCHHHHHHHHHHhhc---cCCCCCcchhhhHHHHHHhcCCceeecCCCC
Q psy12347 194 HGNILLYSPDVVFKLYQHLQT---DQEYFWVDDVFITGIVFSKLNLTHAKFSWWP 245 (428)
Q Consensus 194 ~G~~YvlS~~~v~~l~~~~~~---~~~~~~~eDv~itG~~~~~~~i~~~~~~~~~ 245 (428)
+|+|+++|..+++.|.+.... ..+.+.--|-.+ ..|+..+|+..+..++|+
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i-~~C~~~lgv~LT~e~g~h 65 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRI-QACIAELGVPLTKEPGFH 65 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHH-HHHHHHhCCCceecCCce
Confidence 899999999999999876332 234455566667 888889999999888775
No 45
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=87.76 E-value=29 Score=33.91 Aligned_cols=191 Identities=12% Similarity=0.087 Sum_probs=101.8
Q ss_pred EEEEEEcCCCCHHHHHHHHHHhcc--cceEEEEecCC-ChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHH
Q psy12347 42 YLVLIHSAPYNYERRRLIRNTWGP--RVSLYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVV 118 (428)
Q Consensus 42 lli~V~S~~~~~~~R~~IR~TW~~--~~~~~F~vG~~-~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~ 118 (428)
+-++|.|--.-....+.++..=.+ ....+.++-.. .....+.+.+.. +.++..+...++.-= ..=.-.+++.+.
T Consensus 5 i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~--~~~v~~i~~~~NlG~-agg~n~g~~~a~ 81 (305)
T COG1216 5 ISIIIVTYNRGEDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF--FPNVRLIENGENLGF-AGGFNRGIKYAL 81 (305)
T ss_pred eEEEEEecCCHHHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc--CCcEEEEEcCCCccc-hhhhhHHHHHHh
Confidence 345555544444555666655555 22222233333 222223333222 678876665554320 001114666665
Q ss_pred hhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCC-c--cc-cc-----CCCCcccCc-cccCC--
Q psy12347 119 YNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKS-P--VL-RT-----YRSKWRVSF-SEYRD-- 186 (428)
Q Consensus 119 ~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~-~--~~-R~-----~~~kw~vs~-~~y~~-- 186 (428)
..- .+|++..++|+.+..+-|.+++..... .....+.|..+.... + .. +. ....|..+. .+...
T Consensus 82 ~~~--~~~~l~LN~D~~~~~~~l~~ll~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (305)
T COG1216 82 AKG--DDYVLLLNPDTVVEPDLLEELLKAAEE--DPAAGVVGPLIRNYDESLYIDRRGGESDGLTGGWRASPLLEIAPDL 157 (305)
T ss_pred cCC--CcEEEEEcCCeeeChhHHHHHHHHHHh--CCCCeEeeeeEecCCCCcchheeccccccccccceecccccccccc
Confidence 542 229999999999999999988877642 223334444422111 1 11 11 011222221 11111
Q ss_pred ---CCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 187 ---HFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 187 ---~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
...-.+++|++.++++++++++-- ... .-+...||+-+ +.=+.++|.+..-.+
T Consensus 158 ~~~~~~~~~~~G~~~li~~~~~~~vG~-~de-~~F~y~eD~D~-~~R~~~~G~~i~~~p 213 (305)
T COG1216 158 SSYLEVVASLSGACLLIRREAFEKVGG-FDE-RFFIYYEDVDL-CLRARKAGYKIYYVP 213 (305)
T ss_pred cchhhhhhhcceeeeEEcHHHHHHhCC-CCc-ccceeehHHHH-HHHHHHcCCeEEEee
Confidence 111125789999999999999854 222 33568999998 777778888655444
No 46
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=87.60 E-value=23 Score=32.52 Aligned_cols=144 Identities=10% Similarity=0.003 Sum_probs=70.9
Q ss_pred CCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHH--HhccCCCCCcce-EEEEEeecCC
Q psy12347 91 YHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL--TRTLSPHGTRNL-LMCSIVWEKS 167 (428)
Q Consensus 91 ~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L--~~~~~~~~~~~~-~~g~~~~~~~ 167 (428)
...+.......+. ....=.-.+++.+... +++|++..|+|+.+..+.|.+.+ ..... ..... .+|..+....
T Consensus 46 ~~~i~~i~~~~n~-G~~~a~N~g~~~a~~~--~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~~~ 120 (237)
T cd02526 46 SEKIELIHLGENL-GIAKALNIGIKAALEN--GADYVLLFDQDSVPPPDMVEKLLAYKILSD--KNSNIGAVGPRIIDRR 120 (237)
T ss_pred CCcEEEEECCCce-ehHHhhhHHHHHHHhC--CCCEEEEECCCCCcCHhHHHHHHHHHHhhc--cCCCeEEEeeeEEcCC
Confidence 3445444433321 1233333455555432 58999999999999988888875 22211 12222 2333212111
Q ss_pred cccccC---CCCcccCccccCCC--CCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 168 PVLRTY---RSKWRVSFSEYRDH--FYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 168 ~~~R~~---~~kw~vs~~~y~~~--~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
...... ...|.......... .-..++.|+|.++++++++.+---... -....||+.+ ++-+...|......+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~--~~~~~eD~d~-~~r~~~~G~~~~~~~ 197 (237)
T cd02526 121 TGENSPGVRKSGYKLRIQKEGEEGLKEVDFLITSGSLISLEALEKVGGFDED--LFIDYVDTEW-CLRARSKGYKIYVVP 197 (237)
T ss_pred CCeeccceeccCccceecccccCCceEeeeeeccceEEcHHHHHHhCCCCHH--HcCccchHHH-HHHHHHcCCcEEEEc
Confidence 111000 00111100011111 112355677788999888876321111 1245689998 666667887765554
No 47
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=84.30 E-value=21 Score=35.38 Aligned_cols=134 Identities=10% Similarity=0.068 Sum_probs=70.0
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCC-EEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHD-IVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDEL 144 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~D-Il~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~ 144 (428)
...++++-..+.....+.+++-.+++++ ++......++ . |. .+++-..+++ +.+|++.+|.|.-.+++.+.++
T Consensus 38 ~~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~-G---~~-~A~~~G~~~A-~gd~vv~~DaD~q~~p~~i~~l 111 (325)
T PRK10714 38 EYEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNY-G---QH-SAIMAGFSHV-TGDLIITLDADLQNPPEEIPRL 111 (325)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCC-C---HH-HHHHHHHHhC-CCCEEEEECCCCCCCHHHHHHH
Confidence 6778888766622223333333344444 4433333322 1 21 1233333444 6899999999999999999888
Q ss_pred HHhccCCCCCcceEEEEEeec-CCcccccCCCCcccC-ccccCCCCCcCccccceEEeCHHHHHHHHH
Q psy12347 145 LTRTLSPHGTRNLLMCSIVWE-KSPVLRTYRSKWRVS-FSEYRDHFYPPHCHGNILLYSPDVVFKLYQ 210 (428)
Q Consensus 145 L~~~~~~~~~~~~~~g~~~~~-~~~~~R~~~~kw~vs-~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~ 210 (428)
++... ...+.. |+.... ..+..|...++.+-. -....+..++...+| .-++++++++.+..
T Consensus 112 ~~~~~---~~~DvV-~~~r~~~~~~~~r~~~s~~~~~l~~~~~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 112 VAKAD---EGYDVV-GTVRQNRQDSWFRKTASKMINRLIQRTTGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHH---hhCCEE-EEEEcCCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 88763 123444 443121 122333222221110 011123445565555 34899999999854
No 48
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=82.06 E-value=36 Score=30.17 Aligned_cols=185 Identities=12% Similarity=0.045 Sum_probs=87.1
Q ss_pred EEEEEEcCCCC-HHHHHHHHHHhcc---cceEEEEecCC-ChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHH
Q psy12347 42 YLVLIHSAPYN-YERRRLIRNTWGP---RVSLYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 116 (428)
Q Consensus 42 lli~V~S~~~~-~~~R~~IR~TW~~---~~~~~F~vG~~-~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w 116 (428)
+-|+|.+--.. ..-...++.-=.+ .+.++.+-+.+ ++.....+....+.+.-+.... ...-.+. -.+++.
T Consensus 3 vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiivvd~gs~d~~~~~~~~~~~~~~~~~~~~~-~~~~~g~----~~a~n~ 77 (202)
T cd04184 3 ISIVMPVYNTPEKYLREAIESVRAQTYPNWELCIADDASTDPEVKRVLKKYAAQDPRIKVVF-REENGGI----SAATNS 77 (202)
T ss_pred EEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCChHHHHHHHHHHhcCCCEEEEE-cccCCCH----HHHHHH
Confidence 34555554444 3333333333323 45666665554 4333333333334433333222 1211122 223444
Q ss_pred HHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecC-CcccccCCCCcccCccccCCCC-CcCccc
Q psy12347 117 VVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEK-SPVLRTYRSKWRVSFSEYRDHF-YPPHCH 194 (428)
Q Consensus 117 ~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~-~~~~R~~~~kw~vs~~~y~~~~-yP~y~~ 194 (428)
..+.. ..+|++..|+|..+..+.|.+.+..... ......++|...... ...... .++.+ .+.... +..-+.
T Consensus 78 g~~~a-~~d~i~~ld~D~~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~ 150 (202)
T cd04184 78 ALELA-TGEFVALLDHDDELAPHALYEVVKALNE-HPDADLIYSDEDKIDEGGKRSE---PFFKP--DWSPDLLLSQNYI 150 (202)
T ss_pred HHHhh-cCCEEEEECCCCcCChHHHHHHHHHHHh-CCCCCEEEccHHhccCCCCEec---cccCC--CCCHHHhhhcCCc
Confidence 44444 6899999999999998888877766521 022334444321100 000000 11110 111111 111123
Q ss_pred cceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 195 GNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 195 G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
|++-+++++++.++-- .. ..+...||..+ +.=+...|.+....+
T Consensus 151 ~~~~~~~r~~~~~igg--f~-~~~~~~eD~~l-~~rl~~~g~~~~~~~ 194 (202)
T cd04184 151 GHLLVYRRSLVRQVGG--FR-EGFEGAQDYDL-VLRVSEHTDRIAHIP 194 (202)
T ss_pred cceEeEEHHHHHHhCC--CC-cCcccchhHHH-HHHHHhccceEEEcc
Confidence 4555778888777632 11 23345689888 665566677766554
No 49
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=81.35 E-value=9 Score=33.58 Aligned_cols=135 Identities=12% Similarity=0.084 Sum_probs=69.5
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELL 145 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L 145 (428)
...++.+-..+.......+....+++..+.......+. . | -.++....+.. ..+|++.+|+|..+....|.+++
T Consensus 28 ~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~---G-~-~~a~n~g~~~a-~gd~i~~lD~D~~~~~~~l~~l~ 101 (185)
T cd04179 28 DYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNF---G-K-GAAVRAGFKAA-RGDIVVTMDADLQHPPEDIPKLL 101 (185)
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCC---C-c-cHHHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHHH
Confidence 45555554444334455555556666665444443332 1 1 13344444443 45999999999999988888888
Q ss_pred HhccCCCCCcceEEEEEeecCCc----ccccCCCCcccCcc-ccCCCCCcCccccceEEeCHHHHHHHH
Q psy12347 146 TRTLSPHGTRNLLMCSIVWEKSP----VLRTYRSKWRVSFS-EYRDHFYPPHCHGNILLYSPDVVFKLY 209 (428)
Q Consensus 146 ~~~~~~~~~~~~~~g~~~~~~~~----~~R~~~~kw~vs~~-~y~~~~yP~y~~G~~YvlS~~~v~~l~ 209 (428)
..... ...+.+.|........ ..+.. ..+..... ..-...-.....|+.+++++++++.+-
T Consensus 102 ~~~~~--~~~~~v~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 102 EKLLE--GGADVVIGSRFVRGGGAGMPLLRRL-GSRLFNFLIRLLLGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHhc--cCCcEEEEEeecCCCcccchHHHHH-HHHHHHHHHHHHcCCCCcCCCCceeeeHHHHHHHHH
Confidence 76321 2455666654222211 11100 00000000 000111123346777899999999985
No 50
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=80.78 E-value=40 Score=29.88 Aligned_cols=76 Identities=9% Similarity=0.008 Sum_probs=42.9
Q ss_pred cceEEEEecCC-ChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHH
Q psy12347 66 RVSLYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDEL 144 (428)
Q Consensus 66 ~~~~~F~vG~~-~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~ 144 (428)
...++++.-.+ +......+++-.+++. +.......+ .- + -.+++.+...+ +.+|++..|+|..+....|...
T Consensus 29 ~~eiiivdd~ss~d~t~~~~~~~~~~~~-i~~i~~~~n---~G-~-~~a~N~g~~~a-~gd~i~~lD~Dd~~~~~~l~~~ 101 (201)
T cd04195 29 PDEVVLVKDGPVTQSLNEVLEEFKRKLP-LKVVPLEKN---RG-L-GKALNEGLKHC-TYDWVARMDTDDISLPDRFEKQ 101 (201)
T ss_pred CcEEEEEECCCCchhHHHHHHHHHhcCC-eEEEEcCcc---cc-H-HHHHHHHHHhc-CCCEEEEeCCccccCcHHHHHH
Confidence 34555543222 4344444444445555 443333222 11 1 12345555555 6899999999999998888887
Q ss_pred HHhc
Q psy12347 145 LTRT 148 (428)
Q Consensus 145 L~~~ 148 (428)
+...
T Consensus 102 ~~~~ 105 (201)
T cd04195 102 LDFI 105 (201)
T ss_pred HHHH
Confidence 7764
No 51
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=79.80 E-value=24 Score=31.92 Aligned_cols=113 Identities=15% Similarity=0.086 Sum_probs=58.3
Q ss_pred CccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCC-CCcccCc--ccc---CCCCCcCccccc
Q psy12347 123 HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYR-SKWRVSF--SEY---RDHFYPPHCHGN 196 (428)
Q Consensus 123 ~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~-~kw~vs~--~~y---~~~~yP~y~~G~ 196 (428)
..+|++.+|+|..+..+.|..++..... ...+.+.|+....... ..... ...+.+. ..+ ....-...+.|+
T Consensus 78 ~gd~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~v~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (224)
T cd06442 78 RGDVIVVMDADLSHPPEYIPELLEAQLE--GGADLVIGSRYVEGGG-VEGWGLKRKLISRGANLLARLLLGRKVSDPTSG 154 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhc--CCCCEEEEeeeecCCc-cCCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCc
Confidence 4699999999999998888887776321 2345555654222211 11000 0000000 000 001112456788
Q ss_pred eEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 197 ILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 197 ~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
+.++++++++.+..... ...+. +|.-+ ..-+...|......+
T Consensus 155 ~~~~~r~~~~~ig~~~~--~~~~~-~~~~l-~~~~~~~g~~i~~~p 196 (224)
T cd06442 155 FRAYRREVLEKLIDSLV--SKGYK-FQLEL-LVRARRLGYRIVEVP 196 (224)
T ss_pred cchhhHHHHHHHhhhcc--CCCcE-EeHHH-HHHHHHcCCeEEEeC
Confidence 88899999999872111 11222 22323 344557776665554
No 52
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=79.60 E-value=23 Score=33.81 Aligned_cols=189 Identities=10% Similarity=0.039 Sum_probs=99.6
Q ss_pred EEEEcCCCCHH-HHHHHHHHhc--------ccceEEEEecCC-ChhHHHHHHHH----HhhCCCEEEecccCcCCchhHH
Q psy12347 44 VLIHSAPYNYE-RRRLIRNTWG--------PRVSLYFFIGET-DPSNQTRLDIE----SETYHDIVQGRFWDSYRNLTYK 109 (428)
Q Consensus 44 i~V~S~~~~~~-~R~~IR~TW~--------~~~~~~F~vG~~-~~~~~~~l~~E----~~~~~DIl~~d~~D~y~nlt~K 109 (428)
|+|++.-.... -...++.+.. ....+ |++--+ +++....-+++ .+++..-+.+-+..--.|.-+|
T Consensus 3 IliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~eI-~vldD~~d~~~~~~~~~~~~~l~~~~~~~~~v~~~~r~~~~g~K 81 (254)
T cd04191 3 IVMPVYNEDPARVFAGLRAMYESLAKTGLADHFDF-FILSDTRDPDIWLAEEAAWLDLCEELGAQGRIYYRRRRENTGRK 81 (254)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCceEE-EEECCCCChHHHHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCcc
Confidence 67777666665 5566665543 24555 777655 43322111111 1223332333333333455556
Q ss_pred HHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCC---Ccc-------c
Q psy12347 110 HTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRS---KWR-------V 179 (428)
Q Consensus 110 ~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~---kw~-------v 179 (428)
+-..-..+...-.+.+|++..|.|+.+..+.|.+.+..... .++ +|.+ ...... .+..+ ++. .
T Consensus 82 ag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~---~~~--vg~v-q~~~~~-~n~~~~~~~~~~~~~~~~~ 154 (254)
T cd04191 82 AGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEA---NPR--AGII-QTAPKL-IGAETLFARLQQFANRLYG 154 (254)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHh---CCC--EEEE-eCCcee-ECCCCHHHHHHHHHHHHHH
Confidence 66555555433246899999999999999999888876521 111 2322 111111 11111 100 0
Q ss_pred -----CccccCCCCCcCccccceEEeCHHHHHHHHHHhh--cc--C-CCCCcchhhhHHHHHHhcCCceeecCC
Q psy12347 180 -----SFSEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQ--TD--Q-EYFWVDDVFITGIVFSKLNLTHAKFSW 243 (428)
Q Consensus 180 -----s~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~--~~--~-~~~~~eDv~itG~~~~~~~i~~~~~~~ 243 (428)
....|.. --.+|.|...++.++++..+..... .. . ...-.||..+ |+.+...|-+..-.+.
T Consensus 155 ~~~~~~~~~~~~--~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l-~~~~~~~G~ri~~~~~ 225 (254)
T cd04191 155 PVFGRGLAAWQG--GEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVE-AALMRRAGWEVRLAPD 225 (254)
T ss_pred HHHHHHHHHhcC--CccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHH-HHHHHHcCCEEEEccC
Confidence 0000111 1135679999999998877532111 00 1 1235799997 9999998987765554
No 53
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=79.52 E-value=41 Score=29.22 Aligned_cols=101 Identities=8% Similarity=0.004 Sum_probs=56.8
Q ss_pred HHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCcCc
Q psy12347 113 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYPPH 192 (428)
Q Consensus 113 ~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP~y 192 (428)
+++...+.+ ..+|++..|+|..+...-|.+.+... .....+.|..........+ ..
T Consensus 70 ~~n~g~~~a-~g~~i~~lD~D~~~~~~~l~~~~~~~----~~~~~v~g~~~~~~~~~~~-------------------~~ 125 (182)
T cd06420 70 IRNKAIAAA-KGDYLIFIDGDCIPHPDFIADHIELA----EPGVFLSGSRVLLNEKLTE-------------------RG 125 (182)
T ss_pred HHHHHHHHh-cCCEEEEEcCCcccCHHHHHHHHHHh----CCCcEEecceeecccccce-------------------eE
Confidence 344444444 68999999999999877777766654 2233344443111111000 33
Q ss_pred cccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCcee
Q psy12347 193 CHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHA 239 (428)
Q Consensus 193 ~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~ 239 (428)
..|+++++.+..+.++-.-... ......||+.+ +.=+...|+...
T Consensus 126 ~~~~~~~~~r~~~~~~ggf~~~-~~~~~~eD~~l-~~r~~~~g~~~~ 170 (182)
T cd06420 126 IRGCNMSFWKKDLLAVNGFDEE-FTGWGGEDSEL-VARLLNSGIKFR 170 (182)
T ss_pred eccceEEEEHHHHHHhCCCCcc-cccCCcchHHH-HHHHHHcCCcEE
Confidence 4677777777776643221111 11123799988 666667775443
No 54
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=78.64 E-value=15 Score=33.56 Aligned_cols=101 Identities=22% Similarity=0.201 Sum_probs=49.4
Q ss_pred EEEEEECCCCChHHHHHHHHHhh---ccceEEEEEccCCcchhhhhHhhhhcCCCe-EEeeeccCCCCh--HHHHHHHHH
Q psy12347 322 YLVLIHSAPYNYDKRRLIRNTWG---TRVSVYFFIGETDPSNQTRLDIESETYHDI-VQGRFWDSYRNL--TYKHTMVFK 395 (428)
Q Consensus 322 ~li~V~S~~~~~~~R~~iR~TW~---~~~~~~F~~g~~~~~~~~~l~~E~~~~~Di-i~~~~~d~y~nl--t~K~~~~l~ 395 (428)
+.|+|.+......-++.++.--. .+..++.+...+++...+.+++-.+.+... |.. .....|. +.|. ..++
T Consensus 3 v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~v~v--i~~~~~~g~~~k~-~a~n 79 (228)
T PF13641_consen 3 VSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARYPRVRVRV--IRRPRNPGPGGKA-RALN 79 (228)
T ss_dssp EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTTGG-GEEE--EE----HHHHHHH-HHHH
T ss_pred EEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHcCCCceEE--eecCCCCCcchHH-HHHH
Confidence 44555554444444555544333 235555555444444445566555666653 211 1111333 2343 3457
Q ss_pred HHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 396 WVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 396 w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
++.+.+ +.+|++..|||+.+..+.|..+++
T Consensus 80 ~~~~~~-~~d~i~~lD~D~~~~p~~l~~~~~ 109 (228)
T PF13641_consen 80 EALAAA-RGDYILFLDDDTVLDPDWLERLLA 109 (228)
T ss_dssp HHHHH----SEEEEE-SSEEE-CHHHHHHHH
T ss_pred HHHHhc-CCCEEEEECCCcEECHHHHHHHHH
Confidence 777776 599999999999998887777654
No 55
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=77.88 E-value=7.1 Score=34.90 Aligned_cols=109 Identities=12% Similarity=0.096 Sum_probs=64.3
Q ss_pred EEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCcc---------ccCCCCCcCccccc
Q psy12347 126 YVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFS---------EYRDHFYPPHCHGN 196 (428)
Q Consensus 126 ~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~---------~y~~~~yP~y~~G~ 196 (428)
||+.+|+|+.+..+-|.+.+..... +.-...-|.....+. .+.-.++...+. .......+.++.|+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~--~~~~~vq~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 75 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALED--PKVDAVQGPIIFRNR---GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGS 75 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhC--CCceEEEccEEecCC---CChhheeehhhhhhhhhhhHHHHHhcCCCccccCc
Confidence 6899999999999888887776631 111222222211110 110111111110 01123356788999
Q ss_pred eEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecCC
Q psy12347 197 ILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSW 243 (428)
Q Consensus 197 ~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~~ 243 (428)
+.++++++++.+.--. -+....||..+ |.-+...|.+....+.
T Consensus 76 ~~~~r~~~l~~vg~~~---~~~~~~ED~~l-~~~l~~~G~~~~~~~~ 118 (193)
T PF13632_consen 76 GMLFRREALREVGGFD---DPFSIGEDMDL-GFRLRRAGYRIVYVPD 118 (193)
T ss_pred ceeeeHHHHHHhCccc---ccccccchHHH-HHHHHHCCCEEEEecc
Confidence 9999999999773111 13556799998 8888888877665553
No 56
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=77.34 E-value=14 Score=35.44 Aligned_cols=123 Identities=9% Similarity=-0.098 Sum_probs=62.1
Q ss_pred HHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCC-cceEEEEEeecCCcccccC---CCCcccCccc--cCC
Q psy12347 113 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGT-RNLLMCSIVWEKSPVLRTY---RSKWRVSFSE--YRD 186 (428)
Q Consensus 113 ~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~-~~~~~g~~~~~~~~~~R~~---~~kw~vs~~~--y~~ 186 (428)
+++++.+. +++|++..|||+.+..+.|.+.+..... .. .-.+.|..+.......+.+ ...+...... ...
T Consensus 65 Gi~~a~~~--~~d~i~~lD~D~~~~~~~l~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (281)
T TIGR01556 65 GLDASFRR--GVQGVLLLDQDSRPGNAFLAAQWKLLSA--ENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQISLDGLT 140 (281)
T ss_pred HHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHHHHHh--cCCceEEECCeEEcCCCcccCCceeecccceeeecccccC
Confidence 56776553 6899999999999998777777665421 11 2223333322211110000 0001000000 000
Q ss_pred C-CCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 187 H-FYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 187 ~-~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
. .-..++.++|.++++++++++----. .-++..||+.+ .+=+.+.|.+..-.+
T Consensus 141 ~~~~~~~~~~sg~li~~~~~~~iG~fde--~~fi~~~D~e~-~~R~~~~G~~i~~~~ 194 (281)
T TIGR01556 141 TPQKTSFLISSGCLITREVYQRLGMMDE--ELFIDHVDTEW-SLRAQNYGIPLYIDP 194 (281)
T ss_pred CceeccEEEcCcceeeHHHHHHhCCccH--hhcccchHHHH-HHHHHHCCCEEEEeC
Confidence 1 11134555667899999988732111 11345689887 444446676655443
No 57
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=77.33 E-value=54 Score=33.32 Aligned_cols=192 Identities=9% Similarity=-0.063 Sum_probs=111.6
Q ss_pred cEEEEEEcCCCCH-HHHHHHHHHhcc---cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNY-ERRRLIRNTWGP---RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 116 (428)
Q Consensus 41 ~lli~V~S~~~~~-~~R~~IR~TW~~---~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w 116 (428)
.+-|+|++.-++. -..+.++..=.+ ...++.+...+..+..+.+++..+++++.+..... .+-...-..++.+
T Consensus 55 ~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~~~~~~~~~~~~---~~~~~gK~~al~~ 131 (439)
T COG1215 55 KVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGAEYGPNFRVIYP---EKKNGGKAGALNN 131 (439)
T ss_pred ceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHhhcCcceEEEec---cccCccchHHHHH
Confidence 6778888866655 344455554444 45666666655555666677777777644444311 0112222456677
Q ss_pred HHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcce-EEEEEeecCC-----cccccCCCCcccCc---cccC-C
Q psy12347 117 VVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNL-LMCSIVWEKS-----PVLRTYRSKWRVSF---SEYR-D 186 (428)
Q Consensus 117 ~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~-~~g~~~~~~~-----~~~R~~~~kw~vs~---~~y~-~ 186 (428)
..... +.++|+..|.|+.+..+.|.+.+..... .... ..|.....+. ...|-..-.+.... .... .
T Consensus 132 ~l~~~-~~d~V~~~DaD~~~~~d~l~~~~~~f~~---~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 207 (439)
T COG1215 132 GLKRA-KGDVVVILDADTVPEPDALRELVSPFED---PPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASK 207 (439)
T ss_pred HHhhc-CCCEEEEEcCCCCCChhHHHHHHhhhcC---CCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhh
Confidence 76665 4999999999999999999988887632 1111 1221100110 00010000000000 0001 1
Q ss_pred CCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecCCC
Q psy12347 187 HFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSWW 244 (428)
Q Consensus 187 ~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~~~ 244 (428)
...+..|.|++.++.+++++.+- .- .+..--||..+ +..++..|....-.+.-
T Consensus 208 ~g~~~~~~G~~~~~rr~aL~~~g---~~-~~~~i~ED~~l-t~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 208 GGLISFLSGSSSAFRRSALEEVG---GW-LEDTITEDADL-TLRLHLRGYRVVYVPEA 260 (439)
T ss_pred cCCeEEEcceeeeEEHHHHHHhC---CC-CCCceeccHHH-HHHHHHCCCeEEEeecc
Confidence 12578899999999999999886 22 33345699997 88888888887766654
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=76.92 E-value=46 Score=30.04 Aligned_cols=163 Identities=12% Similarity=0.066 Sum_probs=83.4
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCCE-EEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHDI-VQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDEL 144 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~DI-l~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~ 144 (428)
...++.+-+.+.......+++..++++.. ....... |.- |. .++....+.+ ..+|++.+|.|.......+.++
T Consensus 30 ~~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~i~~~~---n~G-~~-~a~~~g~~~a-~gd~i~~ld~D~~~~~~~l~~l 103 (211)
T cd04188 30 SYEIIVVDDGSKDGTAEVARKLARKNPALIRVLTLPK---NRG-KG-GAVRAGMLAA-RGDYILFADADLATPFEELEKL 103 (211)
T ss_pred CEEEEEEeCCCCCchHHHHHHHHHhCCCcEEEEEccc---CCC-cH-HHHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHH
Confidence 56666665555334445555556666654 2222222 211 22 2334444444 5699999999999999988888
Q ss_pred HHhccCCCCCcceEEEEEeecCCc--ccccCCCCcccCcc------ccCCCCCcCccccceEEeCHHHHHHHHHHhhccC
Q psy12347 145 LTRTLSPHGTRNLLMCSIVWEKSP--VLRTYRSKWRVSFS------EYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQ 216 (428)
Q Consensus 145 L~~~~~~~~~~~~~~g~~~~~~~~--~~R~~~~kw~vs~~------~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~ 216 (428)
+..... ...+..+|........ ..+..... +.+.. ..-...+.. +..+..++++.++..+......
T Consensus 104 ~~~~~~--~~~~~v~g~r~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d-~~~g~~~~~r~~~~~~~~~~~~-- 177 (211)
T cd04188 104 EEALKT--SGYDIAIGSRAHLASAAVVKRSWLRN-LLGRGFNFLVRLLLGLGIKD-TQCGFKLFTRDAARRLFPRLHL-- 177 (211)
T ss_pred HHHHhc--cCCcEEEEEeeccCCcccccccHHHH-HHHHHHHHHHHHHcCCCCcc-cccCceeEcHHHHHHHHhhhhc--
Confidence 876321 2445666654222211 11110000 00000 000111111 1335688999999988643222
Q ss_pred CCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 217 EYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 217 ~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
....+|..+ -..+.+.|.....++
T Consensus 178 -~~~~~d~el-~~r~~~~g~~~~~vp 201 (211)
T cd04188 178 -ERWAFDVEL-LVLARRLGYPIEEVP 201 (211)
T ss_pred -cceEeeHHH-HHHHHHcCCeEEEcC
Confidence 223357777 344556777665554
No 59
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=76.79 E-value=97 Score=32.05 Aligned_cols=183 Identities=11% Similarity=0.110 Sum_probs=98.2
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc---cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP---RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWV 117 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~---~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~ 117 (428)
.+-|+|++.-+...-++.|+.-=.+ +..++.+-..++.+..+.+++..+++..+....... |.. |. .+++..
T Consensus 76 ~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~~---n~G-ka-~AlN~g 150 (444)
T PRK14583 76 LVSILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLAH---NQG-KA-IALRMG 150 (444)
T ss_pred cEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeCC---CCC-HH-HHHHHH
Confidence 5777777765554444444322111 456555544444344455555566676664443222 222 43 455666
Q ss_pred HhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCC---CCcccCccccCC--------
Q psy12347 118 VYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYR---SKWRVSFSEYRD-------- 186 (428)
Q Consensus 118 ~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~---~kw~vs~~~y~~-------- 186 (428)
...+ +.+|++..|.|+.+..+.+.+.+..... .++-...++. +..++.. ++... .+|..
T Consensus 151 l~~a-~~d~iv~lDAD~~~~~d~L~~lv~~~~~--~~~~g~v~g~-----~~~~~~~~~~~~~~~--~e~~~~~~~~~~~ 220 (444)
T PRK14583 151 AAAA-RSEYLVCIDGDALLDKNAVPYLVAPLIA--NPRTGAVTGN-----PRIRTRSTLIGRVQV--GEFSSIIGLIKRT 220 (444)
T ss_pred HHhC-CCCEEEEECCCCCcCHHHHHHHHHHHHh--CCCeEEEEcc-----ceecCCCcchhhHHH--HHHHHHHHHHHHH
Confidence 6665 6899999999999999988877765421 1111122221 1111111 11100 01100
Q ss_pred -CCC--cCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecCC
Q psy12347 187 -HFY--PPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFSW 243 (428)
Q Consensus 187 -~~y--P~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~~ 243 (428)
..| +..++|++.++.+++++++-- - .+..-.||..+ |.-+...|.+..-.+.
T Consensus 221 ~~~~g~~~~~sG~~~~~rr~al~~vGg---~-~~~~i~ED~dl-~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 221 QRVYGQVFTVSGVVAAFRRRALADVGY---W-SPDMITEDIDI-SWKLQLKHWSVFFEPR 275 (444)
T ss_pred HHHhCCceEecCceeEEEHHHHHHcCC---C-CCCcccccHHH-HHHHHHcCCeEEEeec
Confidence 111 123478888899888877621 1 12234699998 8888888887655543
No 60
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=74.26 E-value=27 Score=30.86 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=26.6
Q ss_pred HHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhc
Q psy12347 112 MVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRT 148 (428)
Q Consensus 112 ~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~ 148 (428)
.+++++.+.-.+.+|++.+|.|+.+.++.|..++...
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~ 106 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARF 106 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHH
Confidence 3445543222368999999999999988877776665
No 61
>KOG3708|consensus
Probab=71.69 E-value=9.5 Score=39.82 Aligned_cols=90 Identities=18% Similarity=0.235 Sum_probs=59.1
Q ss_pred EEEEEECCCCChHHHHHHHHHhhccc-eEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCC-ChHHHHHHHHHHHHH
Q psy12347 322 YLVLIHSAPYNYDKRRLIRNTWGTRV-SVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYR-NLTYKHTMVFKWVVY 399 (428)
Q Consensus 322 ~li~V~S~~~~~~~R~~iR~TW~~~~-~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~-nlt~K~~~~l~w~~~ 399 (428)
++++|+|.. .---+|-+|-|..+ ++.|+.+...-. .|.-+...+-.|. +-.....+.++++.+
T Consensus 28 l~~aVmte~---tlA~a~NrT~ahhvprv~~F~~~~~i~------------~~~a~~~~vs~~d~r~~~~~s~vl~~l~~ 92 (681)
T KOG3708|consen 28 LMAAVMTES---TLALAINRTLAHHVPRVHLFADSSRID------------NDLAQLTNVSPYDLRGQKTHSMVLGLLFN 92 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHhhcceeEEeecccccc------------ccHhhccccCccccCccccHHHHHHHHHH
Confidence 567777722 44557778888765 445777754211 1112222233333 333445677888888
Q ss_pred hCC-CccEEEEcCCceEeeHHHHHHHHh
Q psy12347 400 NCP-HVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 400 ~c~-~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
++. +++|++-+-|++|||...|+++|-
T Consensus 93 ~~~~~YDwFll~~D~tYv~a~~L~~l~~ 120 (681)
T KOG3708|consen 93 MVHNNYDWFLLAKDSTYVNAFVLLRLID 120 (681)
T ss_pred hhccccceEEEecCcceecHHHHHHHHh
Confidence 876 799999999999999999999874
No 62
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=70.27 E-value=57 Score=26.45 Aligned_cols=35 Identities=17% Similarity=0.146 Sum_probs=25.8
Q ss_pred HHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhc
Q psy12347 113 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRT 148 (428)
Q Consensus 113 ~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~ 148 (428)
++..+.+++ +.+|++.+|+|..+..+.+...+...
T Consensus 68 ~~~~~~~~~-~~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 68 ARNAGLKAA-RGEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHHh-cCCEEEEECCCCccCccHHHHHHHHH
Confidence 344444444 69999999999999988887764443
No 63
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=68.39 E-value=1.4e+02 Score=31.77 Aligned_cols=192 Identities=9% Similarity=0.078 Sum_probs=98.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc----cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP----RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 116 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~----~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w 116 (428)
.+-|+|+..-+..--.+.|+..=.+ +.+++++...+++.....+++=.++|..+...-. +. .+-+.|.- .++|
T Consensus 67 ~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiVv~d~ndd~T~~~v~~l~~~~p~v~~vv~-~~-~gp~~Ka~-aLN~ 143 (504)
T PRK14716 67 RIAIFVPAWREADVIGRMLEHNLATLDYENYRIFVGTYPNDPATLREVDRLAARYPRVHLVIV-PH-DGPTSKAD-CLNW 143 (504)
T ss_pred ceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEEEECCCChhHHHHHHHHHHHCCCeEEEEe-CC-CCCCCHHH-HHHH
Confidence 6777777755554445555543222 4444444433333333333333456766532221 11 22345654 4444
Q ss_pred HHh------hCC--CccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCC--
Q psy12347 117 VVY------NCP--HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRD-- 186 (428)
Q Consensus 117 ~~~------~c~--~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~-- 186 (428)
+.+ .+. .+++++..|-|..+..+.|..+ .... ...+.+-+.+ ...........+..|.. +|..
T Consensus 144 ~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~-~~~~---~~~~~VQ~pv-~~~~~~~~~~~ag~y~~--ef~~~~ 216 (504)
T PRK14716 144 IYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLY-NYLL---PRHDFVQLPV-FSLPRDWGEWVAGTYMD--EFAESH 216 (504)
T ss_pred HHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHH-Hhhc---CCCCEEecce-eccCCchhHHHHHHHHH--HHHHHH
Confidence 432 222 4699999999999999887643 3331 1222211111 11111000000011111 1110
Q ss_pred -------CC--CcCccccceEEeCHHHHHHHHHHhhc--cCCCCCcchhhhHHHHHHhcCCceeecCC
Q psy12347 187 -------HF--YPPHCHGNILLYSPDVVFKLYQHLQT--DQEYFWVDDVFITGIVFSKLNLTHAKFSW 243 (428)
Q Consensus 187 -------~~--yP~y~~G~~YvlS~~~v~~l~~~~~~--~~~~~~~eDv~itG~~~~~~~i~~~~~~~ 243 (428)
.. -+..++|.|+++++++++++.....- -.+..--||.-+ |+-+...|.+..-.+.
T Consensus 217 ~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dL-glRL~~~G~rv~y~p~ 283 (504)
T PRK14716 217 LKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDI-GLRLKRAGFRQIFVRV 283 (504)
T ss_pred HHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHH-HHHHHHCCCEEEEecc
Confidence 11 23456899999999999998654321 022245799998 9999999998765543
No 64
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=67.85 E-value=68 Score=26.75 Aligned_cols=84 Identities=18% Similarity=0.147 Sum_probs=43.3
Q ss_pred HHHHHHhhccceEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEe
Q psy12347 337 RLIRNTWGTRVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFM 416 (428)
Q Consensus 337 ~~iR~TW~~~~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v 416 (428)
+.+++.-.....++++-..+.+...+.+++-.+....+......+ |. -.-.++..+.++. +.+|++.+|||.++
T Consensus 18 ~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~~~~~i~~i~~~~---n~--g~~~~~n~~~~~a-~~~~i~~ld~D~~~ 91 (169)
T PF00535_consen 18 ESLLKQTDPDFEIIVVDDGSTDETEEILEEYAESDPNIRYIRNPE---NL--GFSAARNRGIKHA-KGEYILFLDDDDII 91 (169)
T ss_dssp HHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHCCSTTEEEEEHCC---CS--HHHHHHHHHHHH---SSEEEEEETTEEE
T ss_pred HHHhhccCCCEEEEEeccccccccccccccccccccccccccccc---cc--ccccccccccccc-ceeEEEEeCCCceE
Confidence 356666333345555554444444444444444344454444433 33 2223334444454 46799999999999
Q ss_pred eHHHHHHHHh
Q psy12347 417 NVIQLDELLT 426 (428)
Q Consensus 417 ~~~~l~~~L~ 426 (428)
....|..+++
T Consensus 92 ~~~~l~~l~~ 101 (169)
T PF00535_consen 92 SPDWLEELVE 101 (169)
T ss_dssp -TTHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 8776555543
No 65
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=66.47 E-value=1.2e+02 Score=29.05 Aligned_cols=167 Identities=10% Similarity=0.046 Sum_probs=88.5
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCCE-E-EecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHDI-V-QGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDE 143 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~DI-l-~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~ 143 (428)
.+.++++=+.+.......|.+-.+.++-+ + ..+......+.+. +.+-+.+++ ..++++.+|.|+.+..+.+.+
T Consensus 34 ~~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A-~~d~l~flD~D~i~~~~~i~~ 108 (281)
T PF10111_consen 34 DFEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYA-RGDYLIFLDADCIPSPDFIEK 108 (281)
T ss_pred CEEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHc-CCCEEEEEcCCeeeCHHHHHH
Confidence 66666665555555557777777877776 3 3232222233332 334444444 799999999999999999988
Q ss_pred HHH---hccCCCCCcceEEEEEeecCCccc-ccCC-C--Cc--ccCcccc--CCCCCc-CccccceEEeCHHHHHHHHHH
Q psy12347 144 LLT---RTLSPHGTRNLLMCSIVWEKSPVL-RTYR-S--KW--RVSFSEY--RDHFYP-PHCHGNILLYSPDVVFKLYQH 211 (428)
Q Consensus 144 ~L~---~~~~~~~~~~~~~g~~~~~~~~~~-R~~~-~--kw--~vs~~~y--~~~~yP-~y~~G~~YvlS~~~v~~l~~~ 211 (428)
.+. .... .....+.+.+........ .... . .| ....... ....+. ....|++.+++++.-.++---
T Consensus 109 ~~~~~~~l~~--~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGf 186 (281)
T PF10111_consen 109 LLNHVKKLDK--NPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGF 186 (281)
T ss_pred HHHHHHHHhc--CCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHhhccccccccccccceEEEEEHHHHHHhCCC
Confidence 888 3321 222333333212221110 0000 0 01 0000001 111121 233558899999888777332
Q ss_pred hhccCCCCCcchhhhHHHHHHhcCCceeec
Q psy12347 212 LQTDQEYFWVDDVFITGIVFSKLNLTHAKF 241 (428)
Q Consensus 212 ~~~~~~~~~~eDv~itG~~~~~~~i~~~~~ 241 (428)
-.. ..-...||.-+ |.=+.+.|......
T Consensus 187 DE~-f~G~G~ED~D~-~~RL~~~~~~~~~~ 214 (281)
T PF10111_consen 187 DER-FRGWGYEDIDF-GYRLKKAGYKFKRS 214 (281)
T ss_pred Ccc-ccCCCcchHHH-HHHHHHcCCcEecC
Confidence 222 22245899998 66566777665433
No 66
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=66.41 E-value=1.7e+02 Score=30.32 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=56.1
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc-----cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP-----RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFK 115 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~-----~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~ 115 (428)
.+-|+|++.-+...-++.|+.--.+ .+.++.+-..+..+..+.+++-.+++..+...- .+. | ..| -.+++
T Consensus 50 ~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~v~v~~-~~~--~-~Gk-a~AlN 124 (439)
T TIGR03111 50 DITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPGLSLRY-MNS--D-QGK-AKALN 124 (439)
T ss_pred CEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCCeEEEE-eCC--C-CCH-HHHHH
Confidence 5666776655444444444443333 234444433333333333333344555543221 121 1 123 34566
Q ss_pred HHHhhCCCccEEEEeCCceEecHHHHHHHHHhc
Q psy12347 116 WVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRT 148 (428)
Q Consensus 116 w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~ 148 (428)
++.+++ +.+|++.+|+|..+..+.|.+.+...
T Consensus 125 ~gl~~s-~g~~v~~~DaD~~~~~d~L~~l~~~f 156 (439)
T TIGR03111 125 AAIYNS-IGKYIIHIDSDGKLHKDAIKNMVTRF 156 (439)
T ss_pred HHHHHc-cCCEEEEECCCCCcChHHHHHHHHHH
Confidence 666665 68999999999999998888877665
No 67
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=65.52 E-value=20 Score=35.91 Aligned_cols=96 Identities=14% Similarity=0.039 Sum_probs=56.3
Q ss_pred HHHHHHHhhCCCccEEEEeCCceEecHH---HHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCC
Q psy12347 112 MVFKWVVYNCPHVKYVFKLDDDVFMNVI---QLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHF 188 (428)
Q Consensus 112 ~~l~w~~~~c~~~~~vlk~DDD~~vn~~---~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~ 188 (428)
.++.|+-+.. ++++++.+|||..+.++ -+.+.|..+. ..+.++|-. -.+. .+.+..+... +...
T Consensus 87 ~aln~vF~~~-~~~~vIILEDDl~~sPdFf~yf~~~l~~y~----~D~~v~~IS-a~Nd-----nG~~~~~~~~--~~~l 153 (334)
T cd02514 87 WALTQTFNLF-GYSFVIILEDDLDIAPDFFSYFQATLPLLE----EDPSLWCIS-AWND-----NGKEHFVDDT--PSLL 153 (334)
T ss_pred HHHHHHHHhc-CCCEEEEECCCCccCHhHHHHHHHHHHHHh----cCCCEEEEE-eecc-----CCcccccCCC--cceE
Confidence 3788887765 79999999999999988 4455555552 223333322 1111 1111111110 2222
Q ss_pred Cc-CccccceEEeCHHHHHHHHHHhhccCCCCCcchh
Q psy12347 189 YP-PHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDV 224 (428)
Q Consensus 189 yP-~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv 224 (428)
|- .|+.|.|+++.+++-+.+ . .. -|....||.
T Consensus 154 yrs~ff~glGWml~r~~W~e~--~-~~-wp~~~WD~w 186 (334)
T cd02514 154 YRTDFFPGLGWMLTRKLWKEL--E-PK-WPKAFWDDW 186 (334)
T ss_pred EEecCCCchHHHHHHHHHHHh--C-CC-CCCCChHHh
Confidence 22 578899999999999888 2 24 455455554
No 68
>COG3306 Glycosyltransferase involved in LPS biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=62.98 E-value=33 Score=32.97 Aligned_cols=164 Identities=15% Similarity=0.140 Sum_probs=82.3
Q ss_pred EEEEcCCCCHHHHHHHHHHhcc-c-ceEEEEecCCC--hhHHHHHHHHHhhCCCEEEeccc-CcCCch-------hHHHH
Q psy12347 44 VLIHSAPYNYERRRLIRNTWGP-R-VSLYFFIGETD--PSNQTRLDIESETYHDIVQGRFW-DSYRNL-------TYKHT 111 (428)
Q Consensus 44 i~V~S~~~~~~~R~~IR~TW~~-~-~~~~F~vG~~~--~~~~~~l~~E~~~~~DIl~~d~~-D~y~nl-------t~K~~ 111 (428)
+.|.|-.+..+|+..++++.+. . ...-|+-|... +.....+.+.-.- +. -....+ .+-++
T Consensus 5 ~~vIsL~~s~~R~~~~~~~f~~~~~~~f~~~~av~~~~~~~~~~~~~~~~~--------~~~~~~~~ls~gEiGC~lSH~ 76 (255)
T COG3306 5 IHVISLKSSQERLEHVAETFEALGGLPFQRFDAVNGKSEDEKDLIAELDAG--------HLLYEGRRLSPGEIGCYLSHL 76 (255)
T ss_pred eehhhhhhhHHHHHHHHHHHhhccCCCceEeeccCccccCHHHHhccccch--------hhhhhccccCchhHHHHHHHH
Confidence 4456666777888999999988 4 77777777662 2222111111111 11 011112 22345
Q ss_pred HHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCC--CCccc-CccccCCCC
Q psy12347 112 MVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYR--SKWRV-SFSEYRDHF 188 (428)
Q Consensus 112 ~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~--~kw~v-s~~~y~~~~ 188 (428)
..++=+.+. +..|++...||+.+.=+ ..+.|+.... .. ..+.|.. +. ..|... .+-.+ ....+-...
T Consensus 77 ~lw~~~~~~--~~~yi~I~EDDV~l~~~-f~~~l~~~~~--~~-~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~ 146 (255)
T COG3306 77 KLWKKALEE--NLPYILILEDDVVLGED-FEEFLEDDLK--LP-VRFLGDD-ID---IHRLETFLSPNPLAFNAVFIGRN 146 (255)
T ss_pred HHHHHHHhC--CCCeEEEeccccccccc-HHHHHHHHHh--hh-hhccchH-HH---HHHHHHhcccceeeccccccccc
Confidence 555555543 57799999999987643 3334433311 11 1122221 00 000000 00000 001111122
Q ss_pred Cc----CccccceEEeCHHHHHHHHHHhhccCCC-CCcchhhh
Q psy12347 189 YP----PHCHGNILLYSPDVVFKLYQHLQTDQEY-FWVDDVFI 226 (428)
Q Consensus 189 yP----~y~~G~~YvlS~~~v~~l~~~~~~~~~~-~~~eDv~i 226 (428)
|| .+.+-+||++|+.+++.+++.+.. .+. .+.|+...
T Consensus 147 ~~~~~~~~~gt~gYiis~~aAk~fl~~~~~-~~~~~pvD~~~~ 188 (255)
T COG3306 147 FPLLNSYHLGTAGYIISRKAAKKFLELTES-FKVVLPVDWFMF 188 (255)
T ss_pred chhhhhcccCccceeecHHHHHHHHHHhhh-cccccChhHHHh
Confidence 22 345668999999999999999875 444 55565554
No 69
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=61.27 E-value=54 Score=33.22 Aligned_cols=86 Identities=12% Similarity=0.057 Sum_probs=47.2
Q ss_pred HHhhccceEEEEEccCCcchhhhhHhhhhcCC---CeEEeeeccCCCChHHH---HHHHHHHHHHhCCCccEEEEcCCce
Q psy12347 341 NTWGTRVSVYFFIGETDPSNQTRLDIESETYH---DIVQGRFWDSYRNLTYK---HTMVFKWVVYNCPHVKYVLKLDDDV 414 (428)
Q Consensus 341 ~TW~~~~~~~F~~g~~~~~~~~~l~~E~~~~~---Dii~~~~~d~y~nlt~K---~~~~l~w~~~~c~~~~~~~k~DDD~ 414 (428)
+++.....++++-+.+.+...+.+++=.+++. .+......+.-.+-..| .-.+++.+.+.+++.+|++.+|+|+
T Consensus 65 q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~ 144 (384)
T TIGR03469 65 QDYPGKLHVILVDDHSTDGTADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADI 144 (384)
T ss_pred CCCCCceEEEEEeCCCCCcHHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCC
Confidence 34433345555555444433333333233343 34443322222222344 3346666666666689999999999
Q ss_pred EeeHHHHHHHHh
Q psy12347 415 FMNVIQLDELLT 426 (428)
Q Consensus 415 ~v~~~~l~~~L~ 426 (428)
.+..+.|.++++
T Consensus 145 ~~~p~~l~~lv~ 156 (384)
T TIGR03469 145 AHGPDNLARLVA 156 (384)
T ss_pred CCChhHHHHHHH
Confidence 998877776654
No 70
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=60.17 E-value=86 Score=26.07 Aligned_cols=72 Identities=14% Similarity=0.008 Sum_probs=39.4
Q ss_pred eEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHH
Q psy12347 348 SVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDEL 424 (428)
Q Consensus 348 ~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~ 424 (428)
.++.+-..+++...+.+.++..++.-.+..-..+.-.++ -..++++.+.+ +.+|++..|+|..+....|..+
T Consensus 28 ~iivvdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~g~----~~~~n~~~~~~-~~~~i~~~D~D~~~~~~~l~~~ 99 (180)
T cd06423 28 EVIVVDDGSTDDTLEILEELAALYIRRVLVVRDKENGGK----AGALNAGLRHA-KGDIVVVLDADTILEPDALKRL 99 (180)
T ss_pred EEEEEeCCCccchHHHHHHHhccccceEEEEEecccCCc----hHHHHHHHHhc-CCCEEEEECCCCCcChHHHHHH
Confidence 344444444444444455554444222222222221222 24455666665 6999999999999987766665
No 71
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=57.36 E-value=1.1e+02 Score=27.32 Aligned_cols=75 Identities=8% Similarity=0.004 Sum_probs=41.2
Q ss_pred eEEEEEccCCcchhhhhH-hhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 348 SVYFFIGETDPSNQTRLD-IESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 348 ~~~F~~g~~~~~~~~~l~-~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
.++.+-+.+.+...+.++ .....+..+....... -.|. .|. .++++..+.+ +.+|++.+|+|..+..+.|..++.
T Consensus 30 eiivvdd~s~d~t~~~~~~~~~~~~~~v~~~~~~~-~~~~-g~~-~a~n~g~~~~-~~d~i~~~D~D~~~~~~~l~~l~~ 105 (229)
T cd04192 30 EVILVDDHSTDGTVQILEFAAAKPNFQLKILNNSR-VSIS-GKK-NALTTAIKAA-KGDWIVTTDADCVVPSNWLLTFVA 105 (229)
T ss_pred EEEEEcCCCCcChHHHHHHHHhCCCcceEEeeccC-cccc-hhH-HHHHHHHHHh-cCCEEEEECCCcccCHHHHHHHHH
Confidence 344444433333344444 2222233444444433 2232 233 3356666666 689999999999998777776664
No 72
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=55.14 E-value=1.8e+02 Score=29.25 Aligned_cols=77 Identities=10% Similarity=0.093 Sum_probs=44.7
Q ss_pred ceEEEEEccCCcchhhhhHhhhhcCCC--eEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHH
Q psy12347 347 VSVYFFIGETDPSNQTRLDIESETYHD--IVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDEL 424 (428)
Q Consensus 347 ~~~~F~~g~~~~~~~~~l~~E~~~~~D--ii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~ 424 (428)
..++++.+.+++...+.+++=.++|.+ |... ....-.+...|.-...+ +.+.+ +.++++.+|+|+.+..+.|.+.
T Consensus 71 ~EIivvdd~s~D~t~~iv~~~~~~~p~~~i~~v-~~~~~~G~~~K~~~l~~-~~~~a-~ge~i~~~DaD~~~~p~~L~~l 147 (373)
T TIGR03472 71 FQMLFGVQDPDDPALAVVRRLRADFPDADIDLV-IDARRHGPNRKVSNLIN-MLPHA-RHDILVIADSDISVGPDYLRQV 147 (373)
T ss_pred eEEEEEeCCCCCcHHHHHHHHHHhCCCCceEEE-ECCCCCCCChHHHHHHH-HHHhc-cCCEEEEECCCCCcChhHHHHH
Confidence 556666665554444444443456666 3222 11111233346544433 45554 6999999999999988887766
Q ss_pred Hh
Q psy12347 425 LT 426 (428)
Q Consensus 425 L~ 426 (428)
++
T Consensus 148 v~ 149 (373)
T TIGR03472 148 VA 149 (373)
T ss_pred HH
Confidence 53
No 73
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=54.63 E-value=1.6e+02 Score=26.32 Aligned_cols=110 Identities=10% Similarity=0.030 Sum_probs=57.6
Q ss_pred HHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeec---CCcccccCCCCcccCccccCCCCCc
Q psy12347 114 FKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWE---KSPVLRTYRSKWRVSFSEYRDHFYP 190 (428)
Q Consensus 114 l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~---~~~~~R~~~~kw~vs~~~y~~~~yP 190 (428)
+.-+...+ +.+|++.+|+|..+....+.+.+.... ......|..... .....+....++.. ......
T Consensus 64 ~n~g~~~a-~~~~i~~~D~D~~~~~~~l~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 133 (221)
T cd02522 64 MNAGAAAA-RGDWLLFLHADTRLPPDWDAAIIETLR----ADGAVAGAFRLRFDDPGPRLRLLELGANL-----RSRLFG 133 (221)
T ss_pred HHHHHHhc-cCCEEEEEcCCCCCChhHHHHHHHHhh----cCCcEEEEEEeeecCCccchhhhhhcccc-----eecccC
Confidence 34444444 589999999999998887777655542 223333332111 11111100011111 111111
Q ss_pred CccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCce
Q psy12347 191 PHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTH 238 (428)
Q Consensus 191 ~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~ 238 (428)
.-.++.+.++++++...+-.- -..+..||.-+ +.-+...|...
T Consensus 134 ~~~~~~~~~~r~~~~~~~G~f----d~~~~~ED~d~-~~r~~~~G~~~ 176 (221)
T cd02522 134 LPYGDQGLFIRRELFEELGGF----PELPLMEDVEL-VRRLRRRGRPA 176 (221)
T ss_pred CCcCCceEEEEHHHHHHhCCC----CccccccHHHH-HHHHHhCCCEE
Confidence 112355788899887666321 12237899988 66666777553
No 74
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=52.87 E-value=1.8e+02 Score=26.35 Aligned_cols=72 Identities=17% Similarity=0.137 Sum_probs=41.3
Q ss_pred ceEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 347 VSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 347 ~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
..++++...+++.....+ ++...+..+.... .+ -.+ |.-+ +....+.. +.+|++.+|+|+.+..+.|.++++
T Consensus 29 ~eiivvdd~s~d~~~~~l-~~~~~~~~~~v~~-~~-~~g---~~~a-~n~g~~~a-~~d~v~~lD~D~~~~~~~l~~l~~ 100 (235)
T cd06434 29 LEIIVVTDGDDEPYLSIL-SQTVKYGGIFVIT-VP-HPG---KRRA-LAEGIRHV-TTDIVVLLDSDTVWPPNALPEMLK 100 (235)
T ss_pred CEEEEEeCCCChHHHHHH-HhhccCCcEEEEe-cC-CCC---hHHH-HHHHHHHh-CCCEEEEECCCceeChhHHHHHHH
Confidence 445555544443333333 3455566665543 21 122 3322 23333333 689999999999999988877764
No 75
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=51.48 E-value=1.4e+02 Score=24.86 Aligned_cols=24 Identities=38% Similarity=0.401 Sum_probs=20.4
Q ss_pred CccEEEEcCCceEeeHHHHHHHHh
Q psy12347 403 HVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 403 ~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
+.+|++..|||..+....+..+++
T Consensus 74 ~~~~i~~~D~D~~~~~~~l~~~~~ 97 (166)
T cd04186 74 KGDYVLLLNPDTVVEPGALLELLD 97 (166)
T ss_pred CCCEEEEECCCcEECccHHHHHHH
Confidence 689999999999998887776654
No 76
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=50.39 E-value=98 Score=29.99 Aligned_cols=78 Identities=12% Similarity=0.090 Sum_probs=52.7
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccC--cCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWD--SYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDE 143 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D--~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~ 143 (428)
...++++=|. +-....|..=.....-++-+++-+ .+..-+.--..+..|.++.| +..+++++|-|+|...++..+
T Consensus 38 ~~~vi~~~~~--~~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~-~Sn~vlFlDvDc~~S~dnF~k 114 (346)
T COG4092 38 ITMVICLRAH--EVMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKC-ESNLVLFLDVDCFGSSDNFAK 114 (346)
T ss_pred cEEEEEEecc--hhHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccc-cccEEEEEeccccccHHHHHH
Confidence 4444444342 233344555555555556666543 34444555677889999999 799999999999999999999
Q ss_pred HHH
Q psy12347 144 LLT 146 (428)
Q Consensus 144 ~L~ 146 (428)
.|.
T Consensus 115 ~l~ 117 (346)
T COG4092 115 MLS 117 (346)
T ss_pred HHH
Confidence 883
No 77
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=46.48 E-value=2.1e+02 Score=25.26 Aligned_cols=74 Identities=14% Similarity=0.047 Sum_probs=39.6
Q ss_pred eEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHH
Q psy12347 348 SVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELL 425 (428)
Q Consensus 348 ~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L 425 (428)
.++.+-+.+.+...+.+++..+.++ +.... .....+...-.-.+++++. ..+.+|++..|+|..+..+.|..++
T Consensus 28 eiiivD~~s~d~t~~~~~~~~~~~~-i~~~~-~~~n~g~~~~~n~~~~~a~--~~~~d~v~~ld~D~~~~~~~l~~l~ 101 (202)
T cd04185 28 HIIVIDNASTDGTAEWLTSLGDLDN-IVYLR-LPENLGGAGGFYEGVRRAY--ELGYDWIWLMDDDAIPDPDALEKLL 101 (202)
T ss_pred eEEEEECCCCcchHHHHHHhcCCCc-eEEEE-CccccchhhHHHHHHHHHh--ccCCCEEEEeCCCCCcChHHHHHHH
Confidence 3334433333344444554444444 32222 2222333333344556665 2368999999999999877666554
No 78
>PRK11204 N-glycosyltransferase; Provisional
Probab=46.15 E-value=2.9e+02 Score=28.02 Aligned_cols=71 Identities=11% Similarity=0.093 Sum_probs=44.1
Q ss_pred EEEEcc-CCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 350 YFFIGE-TDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 350 ~F~~g~-~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
++++.. +++...+.+++..+++..+...... .|.. |. .+++...+.+ +.+|++..|+|..+..+.|.+.++
T Consensus 86 iiVvdD~s~d~t~~~l~~~~~~~~~v~~i~~~---~n~G-ka-~aln~g~~~a-~~d~i~~lDaD~~~~~d~L~~l~~ 157 (420)
T PRK11204 86 VIAINDGSSDNTGEILDRLAAQIPRLRVIHLA---ENQG-KA-NALNTGAAAA-RSEYLVCIDGDALLDPDAAAYMVE 157 (420)
T ss_pred EEEEECCCCccHHHHHHHHHHhCCcEEEEEcC---CCCC-HH-HHHHHHHHHc-CCCEEEEECCCCCCChhHHHHHHH
Confidence 344433 3444455555556666666554432 3332 43 3456666665 689999999999998887776654
No 79
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=45.04 E-value=1.5e+02 Score=26.21 Aligned_cols=75 Identities=11% Similarity=-0.034 Sum_probs=38.8
Q ss_pred ceEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 347 VSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 347 ~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
..++++-..+.+...+.+++-..+++..+..-..+.-.+..... ......+ +.+|++..|+|..+....|..+++
T Consensus 28 ~eiiVvddgS~d~t~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~----n~g~~~~-~g~~v~~ld~Dd~~~~~~l~~~~~ 102 (214)
T cd04196 28 DELIISDDGSTDGTVEIIKEYIDKDPFIIILIRNGKNLGVARNF----ESLLQAA-DGDYVFFCDQDDIWLPDKLERLLK 102 (214)
T ss_pred eEEEEEeCCCCCCcHHHHHHHHhcCCceEEEEeCCCCccHHHHH----HHHHHhC-CCCEEEEECCCcccChhHHHHHHH
Confidence 44555544343334444544445554333222222222332222 2234444 689999999988888776766654
No 80
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=44.91 E-value=1.1e+02 Score=23.90 Aligned_cols=71 Identities=14% Similarity=0.149 Sum_probs=40.8
Q ss_pred cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHH
Q psy12347 66 RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQ 140 (428)
Q Consensus 66 ~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~ 140 (428)
++..++++-..+......+.++ +.++-.......+..-... ...++.+.+....++|++.+|-|=|+.++.
T Consensus 18 G~d~i~i~d~~s~D~t~~~l~~---~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 18 GVDHIYIYDDGSTDGTREILRA---LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCEEEEEECCCCccHHHHHHh---CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 5666666543311122333333 3455555566666543333 334444544444799999999999988764
No 81
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=44.85 E-value=1.1e+02 Score=28.24 Aligned_cols=34 Identities=15% Similarity=0.149 Sum_probs=26.9
Q ss_pred HHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 392 MVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 392 ~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
.+++...++. +.+|++..|+|+.+..+.|.+.++
T Consensus 74 ~a~n~g~~~a-~gd~i~~~DaD~~~~~~~l~~~~~ 107 (241)
T cd06427 74 KACNYALAFA-RGEYVVIYDAEDAPDPDQLKKAVA 107 (241)
T ss_pred HHHHHHHHhc-CCCEEEEEcCCCCCChHHHHHHHH
Confidence 3566666665 579999999999999888877664
No 82
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=43.57 E-value=2.3e+02 Score=25.03 Aligned_cols=82 Identities=10% Similarity=0.026 Sum_probs=45.6
Q ss_pred HHhhccceEEEEEccCCcchhhhhHhhhhcCC--CeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeH
Q psy12347 341 NTWGTRVSVYFFIGETDPSNQTRLDIESETYH--DIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNV 418 (428)
Q Consensus 341 ~TW~~~~~~~F~~g~~~~~~~~~l~~E~~~~~--Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~ 418 (428)
+++.+ ..++++...+++...+.+++-.+.+. ++........ .+...|.- .+....+++ +.+|++..|+|+.+..
T Consensus 26 q~~~~-~eiivVdd~s~d~t~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~-~~n~g~~~a-~~d~i~~~D~D~~~~~ 101 (196)
T cd02520 26 QDYPK-YEILFCVQDEDDPAIPVVRKLIAKYPNVDARLLIGGEK-VGINPKVN-NLIKGYEEA-RYDILVISDSDISVPP 101 (196)
T ss_pred ccCCC-eEEEEEeCCCcchHHHHHHHHHHHCCCCcEEEEecCCc-CCCCHhHH-HHHHHHHhC-CCCEEEEECCCceECh
Confidence 34433 56666666554444445555555554 3322211111 12223433 344455555 5899999999999987
Q ss_pred HHHHHHHh
Q psy12347 419 IQLDELLT 426 (428)
Q Consensus 419 ~~l~~~L~ 426 (428)
..|..++.
T Consensus 102 ~~l~~l~~ 109 (196)
T cd02520 102 DYLRRMVA 109 (196)
T ss_pred hHHHHHHH
Confidence 77766654
No 83
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=42.97 E-value=2.8e+02 Score=26.92 Aligned_cols=113 Identities=14% Similarity=0.218 Sum_probs=69.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc---------cceEEEEecCCC--hhHHHHHHHHHhh----------CCCE--EEe
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP---------RVSLYFFIGETD--PSNQTRLDIESET----------YHDI--VQG 97 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~---------~~~~~F~vG~~~--~~~~~~l~~E~~~----------~~DI--l~~ 97 (428)
.+||+++- ++.++- +-+-|.. .+.+-|++|.+. ......|+.+.++ |+-| +.-
T Consensus 26 ~VLILtpl--rna~~~--l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~ 101 (269)
T PF03452_consen 26 SVLILTPL--RNAASF--LPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEAALKKLQSHGPESKRFRSITILRK 101 (269)
T ss_pred eEEEEEec--CCchHH--HHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHHHHHHHhccCcccCCcceEEEEcC
Confidence 66666655 222221 5555655 899999999984 4555566655433 4454 344
Q ss_pred cccCc------------CCchhHHHHHHH-HHHHhh--CCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEE
Q psy12347 98 RFWDS------------YRNLTYKHTMVF-KWVVYN--CPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSI 162 (428)
Q Consensus 98 d~~D~------------y~nlt~K~~~~l-~w~~~~--c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~ 162 (428)
||.+. .+..-.+.++-. +|+..+ -|..+||+-.|-|+.-.++.|++.|... .++.+.-.+
T Consensus 102 df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~-----~kdIivPn~ 176 (269)
T PF03452_consen 102 DFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAH-----DKDIIVPNC 176 (269)
T ss_pred CCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHhC-----CCCEEccce
Confidence 55332 122233444433 454433 3468999999999999999999998876 345555444
No 84
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=42.63 E-value=2.2e+02 Score=25.65 Aligned_cols=31 Identities=19% Similarity=0.072 Sum_probs=23.5
Q ss_pred HHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 395 KWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 395 ~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
..+.+.. +.+|++..|+|.++..+.|..+++
T Consensus 77 n~~~~~a-~~d~i~~lD~D~~~~~~~l~~l~~ 107 (234)
T cd06421 77 NNALAHT-TGDFVAILDADHVPTPDFLRRTLG 107 (234)
T ss_pred HHHHHhC-CCCEEEEEccccCcCccHHHHHHH
Confidence 4444443 689999999999999887777664
No 85
>PHA01631 hypothetical protein
Probab=42.62 E-value=1e+02 Score=27.50 Aligned_cols=81 Identities=15% Similarity=0.228 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhhCC--CccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccC
Q psy12347 108 YKHTMVFKWVVYNCP--HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYR 185 (428)
Q Consensus 108 ~K~~~~l~w~~~~c~--~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~ 185 (428)
+....+|..+.++.+ +-+.++.+|.|++|+.-. ..+. +....-.|-. .+. .|
T Consensus 54 ~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~~~------~~~v~t~CiP-------A~~-----------kp 107 (176)
T PHA01631 54 LRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EIIP------NERVFTPCYW-------LYY-----------DW 107 (176)
T ss_pred HHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cccc------CCCccceeee-------eee-----------cC
Confidence 344445556655544 357888999999987542 1111 1112222321 111 12
Q ss_pred CCCCcCccccceEEeCHHHHHHHHHHhhc
Q psy12347 186 DHFYPPHCHGNILLYSPDVVFKLYQHLQT 214 (428)
Q Consensus 186 ~~~yP~y~~G~~YvlS~~~v~~l~~~~~~ 214 (428)
.+..-+||.|.-+++.+..+..|....+.
T Consensus 108 ~~~v~~FC~sTNf~~pr~~l~~l~~vi~~ 136 (176)
T PHA01631 108 ANEIRPFCSGTNYIFRKSLLPYLEYTINT 136 (176)
T ss_pred CCcEEEEEccccEEeeHHHhHHHHHHHHH
Confidence 33455899999999999999999776554
No 86
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=40.33 E-value=85 Score=30.40 Aligned_cols=63 Identities=16% Similarity=0.165 Sum_probs=46.1
Q ss_pred hhHhhhhcCCCeEEeeec--cCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 363 RLDIESETYHDIVQGRFW--DSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 363 ~l~~E~~~~~Dii~~~~~--d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
.|..=.....-++.+++. +.+...+.--..+..|.++.| ...+++..|-|+|...++..+.|+
T Consensus 53 ~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~-~Sn~vlFlDvDc~~S~dnF~k~l~ 117 (346)
T COG4092 53 LIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKC-ESNLVLFLDVDCFGSSDNFAKMLS 117 (346)
T ss_pred HHHHHhccccceEEEecCCCccccchhhhhhccchhhhccc-cccEEEEEeccccccHHHHHHHHH
Confidence 333333334445556654 455555666778889999999 699999999999999999998884
No 87
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=37.98 E-value=19 Score=29.56 Aligned_cols=29 Identities=34% Similarity=0.670 Sum_probs=21.0
Q ss_pred HHHHHHHHHHH-----HhCCCccEEEEcCCceEe
Q psy12347 388 YKHTMVFKWVV-----YNCPHVKYVLKLDDDVFM 416 (428)
Q Consensus 388 ~K~~~~l~w~~-----~~c~~~~~~~k~DDD~~v 416 (428)
.+++..++.-+ ..||+|+|++|.|++=+.
T Consensus 48 ~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW~ 81 (108)
T PF05412_consen 48 YQVIQSLRLPATLDRNGACPHARYVLKLDGQHWE 81 (108)
T ss_pred HHHHHHccCceeccCCCCCCCCEEEEEecCceEE
Confidence 45666665433 469999999999998553
No 88
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=35.51 E-value=1.8e+02 Score=26.07 Aligned_cols=92 Identities=15% Similarity=0.199 Sum_probs=56.6
Q ss_pred EEEECCCCChHHHHHHHHHhhc-cceEEEEEccCCcchhhhhHhhhhcCCCeEE-----eeeccCCCChHHHHHHHHHHH
Q psy12347 324 VLIHSAPYNYDKRRLIRNTWGT-RVSVYFFIGETDPSNQTRLDIESETYHDIVQ-----GRFWDSYRNLTYKHTMVFKWV 397 (428)
Q Consensus 324 i~V~S~~~~~~~R~~iR~TW~~-~~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~-----~~~~d~y~nlt~K~~~~l~w~ 397 (428)
+.|.|-+...+||+.+.+.... ....-|+-|........ .+....+..-.. -...-+.-+-++-++..++-+
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~~~~~e~~~Avdg~~l~~--~~~~~~~~~~~~~~~~~~~lt~gEiGC~lSH~~~w~~~ 81 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKLGINFEFFDAVDGRDLSE--DELFRRYDPELFKKRYGRPLTPGEIGCALSHIKAWQRI 81 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCceEEEEeecccccch--HHHHHHhhhhhhhccccccCCcceEeehhhHHHHHHHH
Confidence 5677888999999999888764 35566777654322211 011111111110 011222234467788888888
Q ss_pred HHhCCCccEEEEcCCceEeeHH
Q psy12347 398 VYNCPHVKYVLKLDDDVFMNVI 419 (428)
Q Consensus 398 ~~~c~~~~~~~k~DDD~~v~~~ 419 (428)
.+. +.++.+-..||+.++.+
T Consensus 82 v~~--~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 82 VDS--GLEYALILEDDVIFDPD 101 (200)
T ss_pred HHc--CCCeEEEEecccccccc
Confidence 875 58999999999999854
No 89
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=34.97 E-value=3.4e+02 Score=24.47 Aligned_cols=73 Identities=10% Similarity=0.013 Sum_probs=41.6
Q ss_pred ceEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 347 VSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 347 ~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
..++.+-+.+.+...+.++...+++..+....-.+ .+. . .+++...+.. +.+|++..|+|..+....|.++++
T Consensus 32 ~evivvd~~s~d~~~~~~~~~~~~~~~v~~i~~~~--~~~---~-~a~N~g~~~a-~~d~v~~lD~D~~~~~~~l~~~~~ 104 (249)
T cd02525 32 IEIIVVDGGSTDGTREIVQEYAAKDPRIRLIDNPK--RIQ---S-AGLNIGIRNS-RGDIIIRVDAHAVYPKDYILELVE 104 (249)
T ss_pred cEEEEEeCCCCccHHHHHHHHHhcCCeEEEEeCCC--CCc---h-HHHHHHHHHh-CCCEEEEECCCccCCHHHHHHHHH
Confidence 34555555444444555555555544343332111 122 1 3455555554 689999999999998776666653
No 90
>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing
Probab=33.50 E-value=28 Score=28.55 Aligned_cols=29 Identities=31% Similarity=0.647 Sum_probs=20.4
Q ss_pred HHHHHHHHHHH-----hhCCCccEEEEeCCceEe
Q psy12347 108 YKHTMVFKWVV-----YNCPHVKYVFKLDDDVFM 136 (428)
Q Consensus 108 ~K~~~~l~w~~-----~~c~~~~~vlk~DDD~~v 136 (428)
++++..++.-. ..||+++|+||+|++=+.
T Consensus 48 ~~~iq~l~lPat~~~~~~Cp~ArYv~~l~~qHW~ 81 (108)
T PF05412_consen 48 YQVIQSLRLPATLDRNGACPHARYVLKLDGQHWE 81 (108)
T ss_pred HHHHHHccCceeccCCCCCCCCEEEEEecCceEE
Confidence 45555554332 469999999999998654
No 91
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=32.31 E-value=3.4e+02 Score=26.67 Aligned_cols=102 Identities=16% Similarity=0.230 Sum_probs=56.8
Q ss_pred CCCcEEEEEEcCCCCHHHHHHHHHHhcc-----------cceEEEEecCCChhHHHHHHHHHh----h---CCCEEEecc
Q psy12347 38 LDTVYLVLIHSAPYNYERRRLIRNTWGP-----------RVSLYFFIGETDPSNQTRLDIESE----T---YHDIVQGRF 99 (428)
Q Consensus 38 ~~~~lli~V~S~~~~~~~R~~IR~TW~~-----------~~~~~F~vG~~~~~~~~~l~~E~~----~---~~DIl~~d~ 99 (428)
.+..++|+|+|-... +-+-+.+|=++ .+.++-++|.++++....+.++.. . -|=+..+.-
T Consensus 50 ~~~~L~IGIpTV~R~--~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~ 127 (297)
T PF04666_consen 50 TGKKLCIGIPTVKRE--KESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISP 127 (297)
T ss_pred CCCeEEEEecccccC--CCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEec
Confidence 333799999996643 23456666666 566666677775544444333332 1 233444444
Q ss_pred cCcCC-chh----------------HHHHHHHHHHHhhCCC-ccEEEEeCCceEecHHHH
Q psy12347 100 WDSYR-NLT----------------YKHTMVFKWVVYNCPH-VKYVFKLDDDVFMNVIQL 141 (428)
Q Consensus 100 ~D~y~-nlt----------------~K~~~~l~w~~~~c~~-~~~vlk~DDD~~vn~~~L 141 (428)
..+|+ .+. .|-..=+-++.++|.+ ++|+|-.+||+..-..=+
T Consensus 128 p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~ 187 (297)
T PF04666_consen 128 PPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFL 187 (297)
T ss_pred ccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHH
Confidence 44433 111 1222223445556654 799999999997765533
No 92
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=32.13 E-value=2.5e+02 Score=23.42 Aligned_cols=93 Identities=13% Similarity=0.169 Sum_probs=55.6
Q ss_pred EEEECCCCChHHHHHHHHHhhc-cceEEEEEccCCcchh-hhhHhhhhcCCC-eEEeeeccCCCChHHHHHHHHHHHHHh
Q psy12347 324 VLIHSAPYNYDKRRLIRNTWGT-RVSVYFFIGETDPSNQ-TRLDIESETYHD-IVQGRFWDSYRNLTYKHTMVFKWVVYN 400 (428)
Q Consensus 324 i~V~S~~~~~~~R~~iR~TW~~-~~~~~F~~g~~~~~~~-~~l~~E~~~~~D-ii~~~~~d~y~nlt~K~~~~l~w~~~~ 400 (428)
+.|.+-+...+||+.+++.... .+..-|+-|....... ..+......+.. ........+.-.-.+.++..++-+.+.
T Consensus 2 i~vInL~~~~~Rr~~~~~~~~~~~~~~~~~~Avd~~~~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~lSH~~~w~~~~~~ 81 (128)
T cd06532 2 IFVINLDRSTDRRERMEAQLAALGLDFEFFDAVDGKDLSEEELAALYDALFLPRYGRPLTPGEIGCFLSHYKLWQKIVES 81 (128)
T ss_pred EEEEECCCCHHHHHHHHHHHHHcCCCeEEEeccccccCCHHHHHHHhHHHhhhhcCCCCChhhHHHHHHHHHHHHHHHHc
Confidence 4577888899999999987654 3556677775533222 112111110000 011112223345566778888888775
Q ss_pred CCCccEEEEcCCceEeeH
Q psy12347 401 CPHVKYVLKLDDDVFMNV 418 (428)
Q Consensus 401 c~~~~~~~k~DDD~~v~~ 418 (428)
+.++.+-..||+.+..
T Consensus 82 --~~~~alIlEDDv~~~~ 97 (128)
T cd06532 82 --NLEYALILEDDAILDP 97 (128)
T ss_pred --CCCeEEEEccCcEECC
Confidence 5799999999998764
No 93
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=31.71 E-value=3.9e+02 Score=24.08 Aligned_cols=52 Identities=19% Similarity=0.163 Sum_probs=32.4
Q ss_pred CCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHH
Q psy12347 371 YHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELL 425 (428)
Q Consensus 371 ~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L 425 (428)
...+........ .+...---.+++++... +++|++..|+|+.+..+.|..++
T Consensus 46 ~~~i~~i~~~~n-~G~~~a~N~g~~~a~~~--~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 46 SEKIELIHLGEN-LGIAKALNIGIKAALEN--GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred CCcEEEEECCCc-eehHHhhhHHHHHHHhC--CCCEEEEECCCCCcCHhHHHHHH
Confidence 344444433222 23333344456665543 58999999999999988887774
No 94
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=30.61 E-value=7.4e+02 Score=27.50 Aligned_cols=128 Identities=11% Similarity=0.091 Sum_probs=69.2
Q ss_pred chhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcce-EEEEEe-ecC-CcccccCCCCcccCc
Q psy12347 105 NLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNL-LMCSIV-WEK-SPVLRTYRSKWRVSF 181 (428)
Q Consensus 105 nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~-~~g~~~-~~~-~~~~R~~~~kw~vs~ 181 (428)
|.-.|.- .++.+.++. +.+|++..|.|+.+..+-|.+.+..... .++. +.++.. ..+ .+..|+......++.
T Consensus 212 n~~~KAg-nLN~al~~a-~gd~Il~lDAD~v~~pd~L~~~v~~f~~---dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~ 286 (713)
T TIGR03030 212 NVHAKAG-NINNALKHT-DGELILIFDADHVPTRDFLQRTVGWFVE---DPKLFLVQTPHFFVSPDPIERNLGTFRRMPN 286 (713)
T ss_pred CCCCChH-HHHHHHHhc-CCCEEEEECCCCCcChhHHHHHHHHHHh---CCCEEEEeCCeeccCCCHHhhhhHHHHHhhh
Confidence 4445533 356666665 6899999999999998888776665421 1221 222110 111 111111100000110
Q ss_pred c--c-c----CC--CCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 182 S--E-Y----RD--HFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 182 ~--~-y----~~--~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
+ . | ++ ..-..++.|++.++.+++++.+-- . ....-.||..+ |+.+...|.+....+
T Consensus 287 e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGG---f-~~~~vtED~~l-~~rL~~~G~~~~y~~ 351 (713)
T TIGR03030 287 ENELFYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGG---I-AGETVTEDAET-ALKLHRRGWNSAYLD 351 (713)
T ss_pred HHHHHHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCC---C-CCCCcCcHHHH-HHHHHHcCCeEEEec
Confidence 0 0 0 00 011246778999999999987621 1 11223799996 998888898855544
No 95
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=30.13 E-value=3.3e+02 Score=23.30 Aligned_cols=83 Identities=8% Similarity=-0.010 Sum_probs=43.8
Q ss_pred HHHHHhh-ccceEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEe
Q psy12347 338 LIRNTWG-TRVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFM 416 (428)
Q Consensus 338 ~iR~TW~-~~~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v 416 (428)
..+++.. ....++.+-..+.+...+.++.-.+++..+......... +. -.++....+.. ..+|++..|+|..+
T Consensus 19 l~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~~~~~~~~~~~~~~n~-G~----~~a~n~g~~~a-~gd~i~~lD~D~~~ 92 (185)
T cd04179 19 LLAVLEEGYDYEIIVVDDGSTDGTAEIARELAARVPRVRVIRLSRNF-GK----GAAVRAGFKAA-RGDIVVTMDADLQH 92 (185)
T ss_pred HHHHhccCCCEEEEEEcCCCCCChHHHHHHHHHhCCCeEEEEccCCC-Cc----cHHHHHHHHHh-cCCEEEEEeCCCCC
Confidence 3444442 223333333333334444455555556655444333322 11 13344444444 35999999999999
Q ss_pred eHHHHHHHHh
Q psy12347 417 NVIQLDELLT 426 (428)
Q Consensus 417 ~~~~l~~~L~ 426 (428)
..+.|.+++.
T Consensus 93 ~~~~l~~l~~ 102 (185)
T cd04179 93 PPEDIPKLLE 102 (185)
T ss_pred CHHHHHHHHH
Confidence 8877777665
No 96
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=28.72 E-value=4.1e+02 Score=23.58 Aligned_cols=75 Identities=11% Similarity=0.049 Sum_probs=42.1
Q ss_pred ceEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 347 VSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 347 ~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
..++.+-+.+.+...+.+++..++++..+.. ...-.|.- +. .+++...+.+ +.+|++.+|.|.......|.++++
T Consensus 31 ~eiivvdd~S~D~t~~~~~~~~~~~~~~i~~--i~~~~n~G-~~-~a~~~g~~~a-~gd~i~~ld~D~~~~~~~l~~l~~ 105 (211)
T cd04188 31 YEIIVVDDGSKDGTAEVARKLARKNPALIRV--LTLPKNRG-KG-GAVRAGMLAA-RGDYILFADADLATPFEELEKLEE 105 (211)
T ss_pred EEEEEEeCCCCCchHHHHHHHHHhCCCcEEE--EEcccCCC-cH-HHHHHHHHHh-cCCEEEEEeCCCCCCHHHHHHHHH
Confidence 3444444444444455566666667665322 22112221 22 2333444444 469999999999999887777665
No 97
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=27.70 E-value=9e+02 Score=27.05 Aligned_cols=187 Identities=11% Similarity=0.097 Sum_probs=104.8
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc----cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP----RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 116 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~----~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w 116 (428)
.+-|+|+..-+...-.+.|...=.+ +..+++++..+++.....+++-.++|+++..+-... .+.+.|. .+|+|
T Consensus 64 ~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~vi~~~nD~~T~~~~~~l~~~~p~~~~v~~~~--~g~~gKa-~aLN~ 140 (727)
T PRK11234 64 PLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPATQADVDAVCARFPNVHKVVCAR--PGPTSKA-DCLNN 140 (727)
T ss_pred CEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEEEecCCChhHHHHHHHHHHHCCCcEEEEeCC--CCCCCHH-HHHHH
Confidence 7788888866665555665543212 556666655445554566666667788763322222 1234564 34555
Q ss_pred HHhhC------C--CccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCc----ccCcccc
Q psy12347 117 VVYNC------P--HVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKW----RVSFSEY 184 (428)
Q Consensus 117 ~~~~c------~--~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw----~vs~~~y 184 (428)
+...+ + .++.++..|-|+.|..+.|. .+.... .....+-+.. . +..|+. +.| |+. +|
T Consensus 141 ~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~---~~~~~VQ~p~-~---p~~~~~-~~~~~~~~~~--EF 209 (727)
T PRK11234 141 VLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYLV---ERKDLIQIPV-Y---PFEREW-THFTSGTYID--EF 209 (727)
T ss_pred HHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhhc---CCCCeEeecc-c---CCCccH-HHHHHHHHHH--HH
Confidence 55543 1 24667789999999999996 343331 1223322222 1 112211 111 111 11
Q ss_pred C---------CCC--CcCccccceEEeCHHHHHHHHHHhhc--cCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 185 R---------DHF--YPPHCHGNILLYSPDVVFKLYQHLQT--DQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 185 ~---------~~~--yP~y~~G~~YvlS~~~v~~l~~~~~~--~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
. ... -+..++|.|..+++.+++.+.+.... -..-.--||.-+ |.-+...|.+..=.+
T Consensus 210 a~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dl-g~rL~~~G~~v~f~~ 279 (727)
T PRK11234 210 AELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDI-GFRLKEKGMREIFVR 279 (727)
T ss_pred HHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHH-HHHHHHCCCEEEEcc
Confidence 1 011 24467899999999888777665421 023345799998 999999999864433
No 98
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=27.05 E-value=6.2e+02 Score=28.11 Aligned_cols=195 Identities=13% Similarity=0.053 Sum_probs=102.6
Q ss_pred CCCCC-cEEEEEEcCCCCHH-HHHHHHHHhcc--------cceEEEEecCC-ChhHHH----HHHHHHhhCC---CEEEe
Q psy12347 36 PCLDT-VYLVLIHSAPYNYE-RRRLIRNTWGP--------RVSLYFFIGET-DPSNQT----RLDIESETYH---DIVQG 97 (428)
Q Consensus 36 ~C~~~-~lli~V~S~~~~~~-~R~~IR~TW~~--------~~~~~F~vG~~-~~~~~~----~l~~E~~~~~---DIl~~ 97 (428)
..+.. .+.|+|++.-+..+ -+..++.+..+ +.. +|++.-+ +++... .+.+-.++++ .|..
T Consensus 119 ~~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~e-~~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~y- 196 (691)
T PRK05454 119 PPPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHFD-FFILSDTRDPDIAAAEEAAWLELRAELGGEGRIFY- 196 (691)
T ss_pred CCCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCEE-EEEEECCCChhHHHHHHHHHHHHHHhcCCCCcEEE-
Confidence 34444 88888888776643 22455555542 333 4777766 333211 1222233443 3333
Q ss_pred cccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCc
Q psy12347 98 RFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKW 177 (428)
Q Consensus 98 d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw 177 (428)
..--.|.-.|.-..-.++.....+++|++-.|-|+.+..+.|.+.+..... .++ +|-+ ... +...+.. .+
T Consensus 197 --r~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~---dP~--vGlV-Qt~-~~~~n~~-sl 266 (691)
T PRK05454 197 --RRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEA---NPR--AGLI-QTL-PVAVGAD-TL 266 (691)
T ss_pred --EECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhh---CcC--EEEE-eCC-ccCcCCC-CH
Confidence 222345556777776776655457899999999999999999988876521 111 3333 211 1111111 11
Q ss_pred ccCccccCCCCCc-Cc-------------cccceEEeCHHHHHHHHHH--hhccCC---CCCcchhhhHHHHHHhcCCce
Q psy12347 178 RVSFSEYRDHFYP-PH-------------CHGNILLYSPDVVFKLYQH--LQTDQE---YFWVDDVFITGIVFSKLNLTH 238 (428)
Q Consensus 178 ~vs~~~y~~~~yP-~y-------------~~G~~YvlS~~~v~~l~~~--~~~~~~---~~~~eDv~itG~~~~~~~i~~ 238 (428)
+.--..+....|- -| +.|...++.+++....-.- .....+ ..--||..+ |..+...|-+.
T Consensus 267 faR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~-a~~l~~~GyrV 345 (691)
T PRK05454 267 FARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVE-AALMRRAGWGV 345 (691)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHH-HHHHHHCCCEE
Confidence 1111111111111 01 2355567777766554210 001011 234689986 99999999887
Q ss_pred eecCC
Q psy12347 239 AKFSW 243 (428)
Q Consensus 239 ~~~~~ 243 (428)
.-.+.
T Consensus 346 ~~~pd 350 (691)
T PRK05454 346 WLAPD 350 (691)
T ss_pred EEcCc
Confidence 76665
No 99
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=26.17 E-value=4.2e+02 Score=22.74 Aligned_cols=74 Identities=12% Similarity=0.039 Sum_probs=40.3
Q ss_pred ceEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 347 VSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 347 ~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
..++.+-+.+.+...+.++...+++..+....... |. -|. .+++...+.+ ..+|++.+|+|.......|..+++
T Consensus 30 ~eiivvdd~s~d~t~~~~~~~~~~~~~i~~i~~~~---n~-G~~-~a~n~g~~~a-~~d~i~~~D~D~~~~~~~l~~l~~ 103 (181)
T cd04187 30 YEIIFVDDGSTDRTLEILRELAARDPRVKVIRLSR---NF-GQQ-AALLAGLDHA-RGDAVITMDADLQDPPELIPEMLA 103 (181)
T ss_pred eEEEEEeCCCCccHHHHHHHHHhhCCCEEEEEecC---CC-CcH-HHHHHHHHhc-CCCEEEEEeCCCCCCHHHHHHHHH
Confidence 34444444433333344444455565555444432 22 122 3334444454 469999999999988766665553
No 100
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=25.78 E-value=3.1e+02 Score=21.13 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=30.5
Q ss_pred CCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHH
Q psy12347 372 HDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQ 420 (428)
Q Consensus 372 ~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~ 420 (428)
.++-.......+..-... ...++.+.+...+++|++.+|-|=|+-.+.
T Consensus 41 ~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 41 PGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 444455555566543333 445555555544799999999999987665
No 101
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=24.61 E-value=5.4e+02 Score=23.43 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 393 VFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 393 ~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
.++...+.. +.+|++..|+|+.+..+.|.++++
T Consensus 100 a~n~gi~~a-~~d~i~~lD~D~~~~~~~l~~l~~ 132 (251)
T cd06439 100 ALNRALALA-TGEIVVFTDANALLDPDALRLLVR 132 (251)
T ss_pred HHHHHHHHc-CCCEEEEEccccCcCHHHHHHHHH
Confidence 445555555 469999999999998666666554
No 102
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=23.23 E-value=4.5e+02 Score=25.08 Aligned_cols=75 Identities=12% Similarity=-0.009 Sum_probs=46.5
Q ss_pred ceEEEEEccCCcchhhhhHhhhhcCCCe-E-EeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHH
Q psy12347 347 VSVYFFIGETDPSNQTRLDIESETYHDI-V-QGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDEL 424 (428)
Q Consensus 347 ~~~~F~~g~~~~~~~~~l~~E~~~~~Di-i-~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~ 424 (428)
+.++++=+.+.....+.|++-.+.++-+ + ..+......+.+ .+.+-..+.+ +.++++..|-|+++..+.+.+.
T Consensus 35 ~eiIvvd~~s~~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a----~arN~g~~~A-~~d~l~flD~D~i~~~~~i~~~ 109 (281)
T PF10111_consen 35 FEIIVVDDGSSDEFDEELKKLCEKNGFIRYIRHEDNGEPFSRA----KARNIGAKYA-RGDYLIFLDADCIPSPDFIEKL 109 (281)
T ss_pred EEEEEEECCCchhHHHHHHHHHhccCceEEEEcCCCCCCcCHH----HHHHHHHHHc-CCCEEEEEcCCeeeCHHHHHHH
Confidence 3444544444444446677777777766 2 222222222332 2344555555 7999999999999999888887
Q ss_pred Hh
Q psy12347 425 LT 426 (428)
Q Consensus 425 L~ 426 (428)
++
T Consensus 110 ~~ 111 (281)
T PF10111_consen 110 LN 111 (281)
T ss_pred HH
Confidence 76
No 103
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=23.05 E-value=3.7e+02 Score=25.33 Aligned_cols=33 Identities=21% Similarity=0.013 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 392 MVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 392 ~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
.+++++.+. +++|++..|||+.+..+.|..++.
T Consensus 64 ~Gi~~a~~~--~~d~i~~lD~D~~~~~~~l~~l~~ 96 (281)
T TIGR01556 64 QGLDASFRR--GVQGVLLLDQDSRPGNAFLAAQWK 96 (281)
T ss_pred HHHHHHHHC--CCCEEEEECCCCCCCHHHHHHHHH
Confidence 366776543 589999999999998776666553
No 104
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=22.72 E-value=8.4e+02 Score=25.02 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=54.5
Q ss_pred EEEEEECCCCChHHHHHHHH----HhhccceEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHH
Q psy12347 322 YLVLIHSAPYNYDKRRLIRN----TWGTRVSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWV 397 (428)
Q Consensus 322 ~li~V~S~~~~~~~R~~iR~----TW~~~~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~ 397 (428)
+-|+|.+.-....-++.|+. ++. ...++.+-+.+++...+.+++..+++..+...... .|.. |. .+++..
T Consensus 77 vsViIP~yNE~~~i~~~l~sll~q~yp-~~eIivVdDgs~D~t~~~~~~~~~~~~~v~vv~~~---~n~G-ka-~AlN~g 150 (444)
T PRK14583 77 VSILVPCFNEGLNARETIHAALAQTYT-NIEVIAINDGSSDDTAQVLDALLAEDPRLRVIHLA---HNQG-KA-IALRMG 150 (444)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHcCCCC-CeEEEEEECCCCccHHHHHHHHHHhCCCEEEEEeC---CCCC-HH-HHHHHH
Confidence 44555554443333333322 222 23444444444444555555555666665443322 2332 43 355666
Q ss_pred HHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 398 VYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 398 ~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
.+.+ +.+|++..|.|+.+..+.|.++++
T Consensus 151 l~~a-~~d~iv~lDAD~~~~~d~L~~lv~ 178 (444)
T PRK14583 151 AAAA-RSEYLVCIDGDALLDKNAVPYLVA 178 (444)
T ss_pred HHhC-CCCEEEEECCCCCcCHHHHHHHHH
Confidence 6665 689999999999999888776654
No 105
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=22.31 E-value=1.2e+03 Score=26.64 Aligned_cols=128 Identities=11% Similarity=0.033 Sum_probs=68.7
Q ss_pred chhHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEe--ecCCcccccCCC-CcccCc
Q psy12347 105 NLTYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIV--WEKSPVLRTYRS-KWRVSF 181 (428)
Q Consensus 105 nlt~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~--~~~~~~~R~~~~-kw~vs~ 181 (428)
|.-.|.- .++.+.+++ +.+|++..|.|..+..+-|.+.+..... .++-.++++.. ....+..|+-.. .....+
T Consensus 323 n~~gKAG-nLN~aL~~a-~GEyIavlDAD~ip~pdfL~~~V~~f~~--dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e 398 (852)
T PRK11498 323 HEHAKAG-NINNALKYA-KGEFVAIFDCDHVPTRSFLQMTMGWFLK--DKKLAMMQTPHHFFSPDPFERNLGRFRKTPNE 398 (852)
T ss_pred CCcchHH-HHHHHHHhC-CCCEEEEECCCCCCChHHHHHHHHHHHh--CCCeEEEEcceeccCCchHHHhhHHHhhcccc
Confidence 3334443 566666665 7899999999999988777766543211 11111222210 111111111000 000000
Q ss_pred cc--c----CC--CCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeec
Q psy12347 182 SE--Y----RD--HFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 241 (428)
Q Consensus 182 ~~--y----~~--~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~ 241 (428)
.+ | ++ ..--.+|.|++.++.+++++.+---. . ..--||..+ |+-+...|-+....
T Consensus 399 ~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaLeeVGGfd---~-~titED~dl-slRL~~~Gyrv~yl 461 (852)
T PRK11498 399 GTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA---V-ETVTEDAHT-SLRLHRRGYTSAYM 461 (852)
T ss_pred hhHHHHHHHhHHHhhcccccccceeeeEHHHHHHhcCCC---C-CccCccHHH-HHHHHHcCCEEEEE
Confidence 00 0 00 00124678999999999998873211 1 134699996 99999999876554
No 106
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=21.51 E-value=4.2e+02 Score=21.01 Aligned_cols=30 Identities=23% Similarity=0.174 Sum_probs=21.9
Q ss_pred HHHHHHhCCCccEEEEcCCceEeeHHHHHHH
Q psy12347 394 FKWVVYNCPHVKYVLKLDDDVFMNVIQLDEL 424 (428)
Q Consensus 394 l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~ 424 (428)
+..+.+.+ +.+|++-+|+|..+..+.+..+
T Consensus 69 ~~~~~~~~-~~d~v~~~d~D~~~~~~~~~~~ 98 (156)
T cd00761 69 RNAGLKAA-RGEYILFLDADDLLLPDWLERL 98 (156)
T ss_pred HHHHHHHh-cCCEEEEECCCCccCccHHHHH
Confidence 34444444 5899999999999888777664
No 107
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=20.80 E-value=5.6e+02 Score=22.68 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=18.9
Q ss_pred CccEEEEcCCceEeeHHHHHHHHh
Q psy12347 403 HVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 403 ~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
+.+|++.+|+|..+..+.|..+++
T Consensus 78 ~gd~i~~lD~D~~~~~~~l~~l~~ 101 (224)
T cd06442 78 RGDVIVVMDADLSHPPEYIPELLE 101 (224)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 358999999999888777766654
No 108
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=20.71 E-value=8.1e+02 Score=24.05 Aligned_cols=75 Identities=11% Similarity=0.084 Sum_probs=42.5
Q ss_pred ceEEEEEccCCcchhhhhHhhhhcCCC-eEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHH
Q psy12347 347 VSVYFFIGETDPSNQTRLDIESETYHD-IVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELL 425 (428)
Q Consensus 347 ~~~~F~~g~~~~~~~~~l~~E~~~~~D-ii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L 425 (428)
..++++-+.+.+...+.+++-++.+++ ++.......+ +... +++-..+++ +.+|++.+|.|.-.+.+.+.+++
T Consensus 39 ~EIIvVDDgS~D~T~~il~~~~~~~~~~v~~i~~~~n~-G~~~----A~~~G~~~A-~gd~vv~~DaD~q~~p~~i~~l~ 112 (325)
T PRK10714 39 YEILLIDDGSSDNSAEMLVEAAQAPDSHIVAILLNRNY-GQHS----AIMAGFSHV-TGDLIITLDADLQNPPEEIPRLV 112 (325)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHhhcCCcEEEEEeCCCC-CHHH----HHHHHHHhC-CCCEEEEECCCCCCCHHHHHHHH
Confidence 456666654444444444444444554 4433333222 3222 222333344 58999999999999988888777
Q ss_pred hh
Q psy12347 426 TR 427 (428)
Q Consensus 426 ~~ 427 (428)
+.
T Consensus 113 ~~ 114 (325)
T PRK10714 113 AK 114 (325)
T ss_pred HH
Confidence 53
Done!