Query psy12347
Match_columns 428
No_of_seqs 323 out of 2272
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 16:42:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12347.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12347hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 2.1E-24 7.1E-29 208.4 18.9 196 36-250 9-218 (280)
2 2j0a_A Beta-1,3-N-acetylglucos 99.3 2.3E-12 8E-17 124.0 9.4 103 317-427 10-117 (280)
3 2z86_A Chondroitin synthase; G 95.9 2 6.7E-05 44.8 25.4 190 41-242 94-323 (625)
4 1qg8_A Protein (spore coat pol 93.4 2.7 9.4E-05 37.8 15.8 182 42-235 3-201 (255)
5 1xhb_A Polypeptide N-acetylgal 92.8 3 0.0001 41.8 16.4 191 41-242 30-251 (472)
6 3bcv_A Putative glycosyltransf 90.1 2.5 8.7E-05 37.5 11.3 190 41-241 6-217 (240)
7 2d7i_A Polypeptide N-acetylgal 90.0 7.5 0.00026 40.2 16.2 190 41-241 113-330 (570)
8 4fix_A UDP-galactofuranosyl tr 89.8 4.6 0.00016 42.8 14.5 191 41-242 181-410 (657)
9 2ffu_A Ppgalnact-2, polypeptid 86.0 20 0.00069 36.0 16.2 186 41-242 67-283 (501)
10 2z86_A Chondroitin synthase; G 82.9 14 0.00047 38.3 13.6 183 41-241 376-564 (625)
11 4hg6_A Cellulose synthase subu 69.5 73 0.0025 34.2 14.9 126 107-242 224-361 (802)
12 2c0n_A A197; thermophil protei 66.1 32 0.0011 30.4 9.1 129 82-226 15-154 (203)
13 2l82_A Designed protein OR32; 53.1 24 0.00082 28.0 5.3 51 46-96 55-107 (162)
14 3bcv_A Putative glycosyltransf 49.6 1.3E+02 0.0043 26.0 11.2 73 347-426 35-107 (240)
15 1fo8_A Alpha-1,3-mannosyl-glyc 37.4 66 0.0023 30.9 7.0 30 111-141 88-117 (343)
16 2l82_A Designed protein OR32; 29.3 59 0.002 25.7 4.1 53 324-376 53-107 (162)
17 3ckj_A Putative uncharacterize 26.1 44 0.0015 31.4 3.5 181 41-236 49-250 (329)
18 1qg8_A Protein (spore coat pol 26.0 3.2E+02 0.011 23.5 12.3 35 391-426 77-111 (255)
19 4fix_A UDP-galactofuranosyl tr 25.5 3.8E+02 0.013 27.9 10.9 35 391-426 257-291 (657)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.92 E-value=2.1e-24 Score=208.40 Aligned_cols=196 Identities=16% Similarity=0.119 Sum_probs=133.8
Q ss_pred CCCCCcEEEEEEcCCCCH-HHHHHHHHHhcc--cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccC--cCCchhHHH
Q psy12347 36 PCLDTVYLVLIHSAPYNY-ERRRLIRNTWGP--RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWD--SYRNLTYKH 110 (428)
Q Consensus 36 ~C~~~~lli~V~S~~~~~-~~R~~IR~TW~~--~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D--~y~nlt~K~ 110 (428)
.|....++|+|+|++++. +||.+||+||++ +..++|+....++... .. ..+++++.++.+ ++.+++.|+
T Consensus 9 ~~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~~~fifsd~~d~~l~----~~--~~~~~~~~~~~~~~~~~~l~~K~ 82 (280)
T 2j0a_A 9 ELQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQ----ER--LGPHLVVTQCSAEHSHPALSCKM 82 (280)
T ss_dssp CCCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGGGEEEEESSCCHHHH----HH--HGGGEEECCC-------CCCHHH
T ss_pred CCCcccEEEEEECcHHHHHHHHHHHHHHHhccCCCceEEEcCCCccccc----cc--ccccceeccccccccccchHHHH
Confidence 455559999999999855 577999999999 3334434443344332 11 245788887754 678999999
Q ss_pred HHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcccccCCCCcccCccccCCCCCc
Q psy12347 111 TMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYP 190 (428)
Q Consensus 111 ~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP 190 (428)
...+.+... ++++|++|+||||||++++|+++|...+ ...+.|+|.. ... .++|. +++++...++...|+
T Consensus 83 ~~~~~~~l~--~~~~Wf~~~DDDtyv~~~nL~~~L~~~d---~~~~~YiG~~-~~~-~~~~~---~~~~~~~~~~~~~~~ 152 (280)
T 2j0a_A 83 AAEFDAFLV--SGLRWFCHVDDDNYVNPKALLQLLKTFP---QDRDVYVGKP-SLN-RPIHA---SELQSKQRTKLVRFW 152 (280)
T ss_dssp HHHHHHHHH--HTCSEEEEEETTEEECHHHHHHHHTTSC---TTSCCEEECE-EC-----------------------CC
T ss_pred HHHHHHHhC--CCCcEEEEeCCCcEEcHHHHHHHHHhCC---CCCCEEEEEe-ccC-ccccc---cccCccccccccccC
Confidence 999987643 4899999999999999999999999884 3667888887 433 33332 445554444445565
Q ss_pred Ccc-ccceEEeCHHHHHHHHHHhhccC-------CCCCcchhhhHHHHHH-hcCCceeecCCCCCCCCc
Q psy12347 191 PHC-HGNILLYSPDVVFKLYQHLQTDQ-------EYFWVDDVFITGIVFS-KLNLTHAKFSWWPGHDEP 250 (428)
Q Consensus 191 ~y~-~G~~YvlS~~~v~~l~~~~~~~~-------~~~~~eDv~itG~~~~-~~~i~~~~~~~~~~~~~~ 250 (428)
|| +|+||+||++++++|+..+.. . .....||+++ |+|++ ++||.+++.++|+.+...
T Consensus 153 -y~~GGaG~vlSr~~l~~l~~~~~~-~~~~~~~~~~~~~dD~~l-G~Cl~~~lGV~~~~~~~Fh~~~~~ 218 (280)
T 2j0a_A 153 -FATGGAGFCINRQLALKMVPWASG-SHFVDTSALIRLPDDCTV-GYIIECKLGGRLQPSPLFHSHLET 218 (280)
T ss_dssp -EECGGGCEEEEHHHHHHHHHHHTT-CTTSCCTTTTTSCHHHHH-HHHHHHTTCCCEEECTTCCCSSSC
T ss_pred -cccCCCEEEECHHHHHHHHHhhcc-cccccccccCCCCccHHH-HHHHHhcCCCCceecccccCCCch
Confidence 55 678999999999999986544 3 2345799999 99999 999999999999866543
No 2
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.33 E-value=2.3e-12 Score=123.99 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=76.0
Q ss_pred CCCceEEEEEECCCC-ChHHHHHHHHHhhccce-EEE-EEccCCcchhhhhHhhhhcCCCeEEeeecc--CCCChHHHHH
Q psy12347 317 CLDTVYLVLIHSAPY-NYDKRRLIRNTWGTRVS-VYF-FIGETDPSNQTRLDIESETYHDIVQGRFWD--SYRNLTYKHT 391 (428)
Q Consensus 317 c~~~~~li~V~S~~~-~~~~R~~iR~TW~~~~~-~~F-~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d--~y~nlt~K~~ 391 (428)
|....++++|+|+++ +.+||++||+|||++.. .+| +++..+...+. . ..+++++.++.+ ++.+++.|+.
T Consensus 10 ~~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~~~fifsd~~d~~l~~----~--~~~~~~~~~~~~~~~~~~l~~K~~ 83 (280)
T 2j0a_A 10 LQLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQQTFIFTDSPDERLQE----R--LGPHLVVTQCSAEHSHPALSCKMA 83 (280)
T ss_dssp CCGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGGGEEEEESSCCHHHHH----H--HGGGEEECCC-------CCCHHHH
T ss_pred CCcccEEEEEECcHHHHHHHHHHHHHHHhccCCCceEEEcCCCcccccc----c--ccccceeccccccccccchHHHHH
Confidence 555668899999998 67788999999998753 344 44444433322 1 245788877754 6778999999
Q ss_pred HHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHhh
Q psy12347 392 MVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLTR 427 (428)
Q Consensus 392 ~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~~ 427 (428)
..+++... ++++|++|+|||+||++++|+++|++
T Consensus 84 ~~~~~~l~--~~~~Wf~~~DDDtyv~~~nL~~~L~~ 117 (280)
T 2j0a_A 84 AEFDAFLV--SGLRWFCHVDDDNYVNPKALLQLLKT 117 (280)
T ss_dssp HHHHHHHH--HTCSEEEEEETTEEECHHHHHHHHTT
T ss_pred HHHHHHhC--CCCcEEEEeCCCcEEcHHHHHHHHHh
Confidence 99997643 58999999999999999999999974
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=95.94 E-value=2 Score=44.85 Aligned_cols=190 Identities=12% Similarity=0.034 Sum_probs=95.0
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc----cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP----RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKW 116 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~----~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w 116 (428)
.+-|+|.+.-.....+..++.--.+ ...++.+-..+.... ..+.++......+......+.-.. .-.+++.
T Consensus 94 ~vsviIp~~n~~~~l~~~l~sl~~q~~~~~~eiivvDd~s~d~t-~~~~~~~~~~~~i~~i~~~~~~~g----~~~a~N~ 168 (625)
T 2z86_A 94 GLSIVIPTYNRAKILAITLACLCNQKTIYDYEVIVADDGSKENI-EEIVREFESLLNIKYVRQKDYGYQ----LCAVRNL 168 (625)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHTCCCSSCEEEEEEEESCSSCH-HHHHHTTTTTSCEEEEEECCCSCC----HHHHHHH
T ss_pred cEEEEEecCCcHHHHHHHHHHHHhhccCCCeEEEEEeCCCchhH-HHHHHHhhhcCCeEEEEeCCCCcc----hhHHHHH
Confidence 5667777754322233333322222 456666654442222 333333333334544432211111 2234455
Q ss_pred HHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcc------------ccc------------
Q psy12347 117 VVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPV------------LRT------------ 172 (428)
Q Consensus 117 ~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~------------~R~------------ 172 (428)
+.+.+ ..+|++.+|+|..+....|...+..... .....++|......... .+.
T Consensus 169 g~~~a-~g~~v~~lD~D~~~~~~~l~~~~~~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (625)
T 2z86_A 169 GLRAA-KYNYVAILDCDMAPNPLWVQSYMELLAV--DDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVAG 245 (625)
T ss_dssp HHHHC-CSSEEEEECTTEEECTTHHHHHHHHHHH--CTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC---------
T ss_pred HHHhC-CcCEEEEECCCCCCCHHHHHHHHHHHhc--CCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchhh
Confidence 55555 6899999999999998887777665421 12334444432211110 000
Q ss_pred -----CCCCcccCc----cccC-CCCCcCccccceEEeCHHHHHHHHHHhhccCCCCC--cchhhhHHHHHHhcCCceee
Q psy12347 173 -----YRSKWRVSF----SEYR-DHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFW--VDDVFITGIVFSKLNLTHAK 240 (428)
Q Consensus 173 -----~~~kw~vs~----~~y~-~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~--~eDv~itG~~~~~~~i~~~~ 240 (428)
....|.... .... ...-..++.|++.+++++++..+-- .. ..++. .||..+ +.=+...|.....
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~l~~iGg--fd-e~~~~~g~ED~dl-~~Rl~~~G~~i~~ 321 (625)
T 2z86_A 246 KVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKWLFRAGW--FD-EEFTHWGGEDNEF-GYRLYREGCYFRS 321 (625)
T ss_dssp ------CCCTHHHHHHHTTTTTTCSCGGGGCCTTEEEEETHHHHHHCC--CC-TTCSSCCCHHHHH-HHHHHHTTCEEEE
T ss_pred hhccCCccccchhhhcccccccccCCceeEEeeceeeeEHHHHHHhCC--Cc-cccccCCcchhhh-hhhHHhCCceEEE
Confidence 000111000 0000 1111135789999999999988721 11 23332 799998 7777788877655
Q ss_pred cC
Q psy12347 241 FS 242 (428)
Q Consensus 241 ~~ 242 (428)
.+
T Consensus 322 ~p 323 (625)
T 2z86_A 322 VE 323 (625)
T ss_dssp CG
T ss_pred cc
Confidence 54
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=93.43 E-value=2.7 Score=37.76 Aligned_cols=182 Identities=8% Similarity=0.009 Sum_probs=94.3
Q ss_pred EEEEEEcCCCCHHHHHHHHHHhcc---cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcC-----CchhHHHHHH
Q psy12347 42 YLVLIHSAPYNYERRRLIRNTWGP---RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSY-----RNLTYKHTMV 113 (428)
Q Consensus 42 lli~V~S~~~~~~~R~~IR~TW~~---~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y-----~nlt~K~~~~ 113 (428)
+-|+|++.-.....++.|+.--.+ .+.++.+-..+.... ..+.++...+..|........- .|. -.-.+
T Consensus 3 vSViIp~yn~~~~l~~~l~Sl~~q~~~~~eiivvDd~S~d~t-~~~~~~~~~~~~i~~i~~~~~~~~~~~~n~--G~~~a 79 (255)
T 1qg8_A 3 VSVIMTSYNKSDYVAKSISSILSQTFSDFELFIMDDNSNEET-LNVIRPFLNDNRVRFYQSDISGVKERTEKT--RYAAL 79 (255)
T ss_dssp EEEEEEESSCTTTHHHHHHHHHTCSCCCEEEEEEECSCCHHH-HHHHGGGGGSTTEEEEECCCCSHHHHHSSC--HHHHH
T ss_pred EEEEEEcCCCHHHHHHHHHHHHhccCCceEEEEEECCCCchH-HHHHHHHhhcCCEEEEeccccccccccccc--CHHHH
Confidence 445666643333333343333333 566666665553333 3344444445566544332100 232 23445
Q ss_pred HHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeec--CC--cccccCCCCcccCccccCCCCC
Q psy12347 114 FKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWE--KS--PVLRTYRSKWRVSFSEYRDHFY 189 (428)
Q Consensus 114 l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~--~~--~~~R~~~~kw~vs~~~y~~~~y 189 (428)
++...+++ +.+|++.+|+|.++..+.|...+..... .+....+.|..... +. .+.. .+..+..... ...
T Consensus 80 ~N~gi~~a-~g~~i~~lD~Dd~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~ 152 (255)
T 1qg8_A 80 INQAIEMA-EGEYITYATDDNIYMPDRLLKMVRELDT-HPEKAVIYSASKTYHLNENRDIVK----ETVRPAAQVT-WNA 152 (255)
T ss_dssp HHHHHHHC-CCSEEEEEETTEEECTTHHHHHHHHHHH-CTTCCEEEEEEEEEEEC---CEEE----EEEECCCSCB-SCC
T ss_pred HHHHHHHc-CCCEEEEeCCCCccChHHHHHHHHHHHh-CCCceEEEeceEEEEeCCCCcchh----hccCchHHHH-Hhh
Confidence 66666666 7899999999999998887776665421 01234444443211 11 1111 1111111111 133
Q ss_pred cCccccceEEeCHHHHHHHHHHh-----hccCCCCCcchhhhHHHHHHhcC
Q psy12347 190 PPHCHGNILLYSPDVVFKLYQHL-----QTDQEYFWVDDVFITGIVFSKLN 235 (428)
Q Consensus 190 P~y~~G~~YvlS~~~v~~l~~~~-----~~~~~~~~~eDv~itG~~~~~~~ 235 (428)
..++.|++.++.++++.++-... .. ..+...||..+ +.-+...|
T Consensus 153 ~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~-~~~~~~eD~~~-~~r~~~~g 201 (255)
T 1qg8_A 153 PCAIDHCSVMHRYSVLEKVKEKFGSYWDES-PAFYRIGDARF-FWRVNHFY 201 (255)
T ss_dssp TTTSCGGGEEEETHHHHHHHHHHSSSSCCC-GGGSTTHHHHH-HHHHTTTC
T ss_pred cCCCccceEEEEHHHHHhhcccccccccCC-cccchHHHHHH-HHHHHHhC
Confidence 45678899999999999875222 01 23456799987 44444434
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=92.79 E-value=3 Score=41.79 Aligned_cols=191 Identities=12% Similarity=0.023 Sum_probs=101.4
Q ss_pred cEEEEEEcCCCC-HHHHHHHH----HHhcc-cceEEEEecCC-ChhHHHHHHHHHhhCC-CEEEecccCcCCchhHHHHH
Q psy12347 41 VYLVLIHSAPYN-YERRRLIR----NTWGP-RVSLYFFIGET-DPSNQTRLDIESETYH-DIVQGRFWDSYRNLTYKHTM 112 (428)
Q Consensus 41 ~lli~V~S~~~~-~~~R~~IR----~TW~~-~~~~~F~vG~~-~~~~~~~l~~E~~~~~-DIl~~d~~D~y~nlt~K~~~ 112 (428)
.+-|+|.+.-.. ...+..|+ +|... ...++.|-..+ ++...+.+++-.+.+. .|..+...++. - ...
T Consensus 30 ~vSVIIp~yN~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~~~~~~~~~~v~vi~~~~n~---G--~~~ 104 (472)
T 1xhb_A 30 TTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLESYVKKLKVPVHVIRMEQRS---G--LIR 104 (472)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHHHHHHSSSSCEEEEECSSCC---C--HHH
T ss_pred CeEEEEEeCCCCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHHHHHHHCCCcEEEEECCCCC---C--hHH
Confidence 577777776544 33333333 33322 24666665444 4445556666666676 46555443322 1 233
Q ss_pred HHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEe--ecCCcccccC-------CCCcccCccc
Q psy12347 113 VFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIV--WEKSPVLRTY-------RSKWRVSFSE 183 (428)
Q Consensus 113 ~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~--~~~~~~~R~~-------~~kw~vs~~~ 183 (428)
+.....++. ..+|++..|+|+.+..+-|..++..... .+...+++.+ .......... .-.|......
T Consensus 105 a~N~g~~~A-~gd~i~flD~D~~~~p~~L~~ll~~~~~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (472)
T 1xhb_A 105 ARLKGAAVS-RGQVITFLDAHCECTAGWLEPLLARIKH---DRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRW 180 (472)
T ss_dssp HHHHHHHHC-CSSEEEEEESSEEECTTCHHHHHHHHHH---CTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEE
T ss_pred HHHHHHHhc-cCCeEEEECCCeEeCccHHHHHHHHHHh---CCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeec
Confidence 445555555 6899999999999998888877765531 2233333331 1111110000 0011111100
Q ss_pred c--------------CCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 184 Y--------------RDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 184 y--------------~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
. .....-+++.|++++++++++.++-.--.. ......||+.+ ++=+...|.+....+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~-~~~~g~ED~dl-~~R~~~~G~~i~~~p 251 (472)
T 1xhb_A 181 YPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAG-MDIWGGENLEI-SFRIWQCGGTLEIVT 251 (472)
T ss_dssp EECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHHHHHHTTSCCTT-SCTTCCCCSHH-HHHHHHTTCEEEEEE
T ss_pred ccCCHHHHhcccCCCCCcccCccccceeEEEEHHHHHHcCCCCCc-ccccCchhHHH-HHHHHhcCCeEEEcc
Confidence 0 012223577899999999999887321111 22224799998 766667787654443
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=90.06 E-value=2.5 Score=37.55 Aligned_cols=190 Identities=9% Similarity=0.033 Sum_probs=93.6
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc---cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP---RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWV 117 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~---~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~ 117 (428)
.+-|+|.+.-.....++.|+.--.+ .+.++.+-..+.....+.+++-.+++..|.... .+ |.- .-.+.+..
T Consensus 6 ~vsViIp~yn~~~~l~~~l~Sl~~q~~~~~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g 79 (240)
T 3bcv_A 6 KVSVIVPIYNVEKYLDQCVQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSG 79 (240)
T ss_dssp SEEEEEEESSCTTTHHHHHHHHHTCSSSSEEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHH
T ss_pred cEEEEEecCCCHHHHHHHHHHHHhCcCCCeEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHH
Confidence 4556666644333344444433333 566776655453334455555556677776554 22 322 23345556
Q ss_pred HhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEee--cCCc----ccccC-CCCcccCccc--cCCCC
Q psy12347 118 VYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVW--EKSP----VLRTY-RSKWRVSFSE--YRDHF 188 (428)
Q Consensus 118 ~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~--~~~~----~~R~~-~~kw~vs~~~--y~~~~ 188 (428)
.+++ +.+|++.+|+|.++....|.+.+..... ...+..+|+... .... ..+.. ...++-.... +-...
T Consensus 80 ~~~a-~g~~i~~lD~Dd~~~~~~l~~l~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (240)
T 3bcv_A 80 LDVA-TGEYVAFCDSDDYVDSDMYMTMYNVAQK--YTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDL 156 (240)
T ss_dssp HHHC-CSSEEEECCTTCCCCTTHHHHHHHHHHH--HTCSEEEC--------------------CEEECSHHHHHHHHGGG
T ss_pred HHHc-CCCEEEEECCCCcCCHHHHHHHHHHHHh--cCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHH
Confidence 6666 6899999999999998888777665421 123455554311 1110 00000 0001100000 00000
Q ss_pred C---c-------CccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeec
Q psy12347 189 Y---P-------PHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 241 (428)
Q Consensus 189 y---P-------~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~ 241 (428)
+ | ...+|++.++.+++++++--.... ...+..||+.+ ++-+...|.+..-.
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~g~~f~~-~~~~~~eD~~~-~~r~~~~g~~i~~~ 217 (240)
T 3bcv_A 157 IASDPYAREERAIQVSAKVVLYRRNLIEKKHLRFVS-ERILPSEDLIF-NVDVLANSNIVCVL 217 (240)
T ss_dssp TSSCHHHHHHHHHHHTCSCEEEEHHHHHHTTCCCCC-TTTCTTHHHHH-HHHHHTTCSCEEEC
T ss_pred hhcchhhccccccccchhheeeeHHHHHHcCCccCC-CCCccCCCHHH-HHHHHHhCCEEEEE
Confidence 0 0 013577889999998875201111 11235699998 55555666554444
No 7
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=90.03 E-value=7.5 Score=40.17 Aligned_cols=190 Identities=13% Similarity=0.059 Sum_probs=101.0
Q ss_pred cEEEEEEcCCCC-HHHHH----HHHHHhcc-cceEEEEecCC-ChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHH
Q psy12347 41 VYLVLIHSAPYN-YERRR----LIRNTWGP-RVSLYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMV 113 (428)
Q Consensus 41 ~lli~V~S~~~~-~~~R~----~IR~TW~~-~~~~~F~vG~~-~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~ 113 (428)
.+-|+|.+.-.. ...+. .+++|... ...++.|-..+ ++...+.|++..+.+..|..+....+ .++ ..+
T Consensus 113 ~vSVIIp~yNe~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~~~~~~~~~v~vi~~~~n-~G~----~~A 187 (570)
T 2d7i_A 113 NTSIIIPFHNEGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLEDYMALFPSVRILRTKKR-EGL----IRT 187 (570)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHHHHHTTSTTEEEEECSSC-CCH----HHH
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHHHHHHhCCeEEEEECCCC-CCH----HHH
Confidence 577777776554 23333 33344333 23666665555 54435666666677766665544332 122 233
Q ss_pred HHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEee--cCCcc-ccc---C----CCCcccCcc-
Q psy12347 114 FKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVW--EKSPV-LRT---Y----RSKWRVSFS- 182 (428)
Q Consensus 114 l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~--~~~~~-~R~---~----~~kw~vs~~- 182 (428)
.....+.. ..+|+++.|+|+.+...-|..++..... .....+|..+. ..... .+. . .-.|.....
T Consensus 188 ~N~G~~~A-~gd~i~fLD~D~~~~p~~L~~ll~~l~~---~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (570)
T 2d7i_A 188 RMLGASVA-TGDVITFLDSHCEANVNWLPPLLDRIAR---NRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKR 263 (570)
T ss_dssp HHHHHHHC-CSSEEEECCSSEEECTTCSHHHHHHHHH---CTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEE
T ss_pred HHHHHHhc-CCCEEEEEcCCccccccHHHHHHHHHHh---CCCEEEeeeeeccCCCchhhccccCCcccccccccccccc
Confidence 44444454 6899999999999988877776665421 22345554321 11110 000 0 001211110
Q ss_pred -------ccC---CCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeec
Q psy12347 183 -------EYR---DHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 241 (428)
Q Consensus 183 -------~y~---~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~ 241 (428)
.+. ...--+++.|++.+++++++..+----.. ......||+-+ .+=+...|.+....
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfDe~-~~~~g~ED~dl-~~Rl~~~G~~i~~~ 330 (570)
T 2d7i_A 264 IPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPG-LEIWGGEQYEI-SFKVWMCGGRMEDI 330 (570)
T ss_dssp ECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHHTTSSCTT-CCSSSSHHHHH-HHHHHHTTCEEEEE
T ss_pred cccchhhhccCCCcceecccccceEEEEEHHHHHhcCCCCCc-ccccCcchHHH-HHHHHhCCCeEEEc
Confidence 111 11122467899999999999887321111 22222799998 66666778765443
No 8
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=89.79 E-value=4.6 Score=42.76 Aligned_cols=191 Identities=10% Similarity=0.000 Sum_probs=99.4
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc-----cceEEEEecCC--ChhHHHHHHHHHh-hCCCEEEecccCcCCchh--HHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP-----RVSLYFFIGET--DPSNQTRLDIESE-TYHDIVQGRFWDSYRNLT--YKH 110 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~-----~~~~~F~vG~~--~~~~~~~l~~E~~-~~~DIl~~d~~D~y~nlt--~K~ 110 (428)
.+-|+|.+--.....++.|..--.+ ...-+.||-.. +......+.+..+ .+..|..+.- + |+- .=-
T Consensus 181 kVSVVIptYN~~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~~~~~~e~~~~~~~~I~vI~~-~---N~G~a~a~ 256 (657)
T 4fix_A 181 NIAVGIPTFNRPADCVNALRELTADPLVDQVIGAVIVPDQGERKVRDHPDFPAAAARLGSRLSIHDQ-P---NLGGSGGY 256 (657)
T ss_dssp CEEEECCBSSCHHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGGSTTHHHHHHHHGGGEEEEEC-C---CCHHHHHH
T ss_pred eEEEEEEecCCHHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccchHHHHHHHHhcCCCEEEEEC-C---CCCHHHHH
Confidence 7777777754434444444332222 23234454333 3221112222222 2334544432 1 332 223
Q ss_pred HHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEeecCCcc-cccCCC--------Cc----
Q psy12347 111 TMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVWEKSPV-LRTYRS--------KW---- 177 (428)
Q Consensus 111 ~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~~~~-~R~~~~--------kw---- 177 (428)
-.+++.+.... +++||+..|||+.+..+.|..++..... .....++|+.+...... .....+ .|
T Consensus 257 N~Gl~~A~g~~-~~dyIlfLD~D~~~~pd~L~~ll~~l~~--~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~ 333 (657)
T 4fix_A 257 SRVMYEALKNT-DCQQILFMDDDIRLEPDSILRVLAMHRF--AKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAP 333 (657)
T ss_dssp HHHHHHHHHHC-CCSEEEEECSSEEECTHHHHHHHHHHHH--BSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECT
T ss_pred HHHHHHHHhcC-CCCEEEEECCCCccChhHHHHHHHHHHh--CCCcEEEEeEEecCCCCceeeecccEeccccccccccc
Confidence 44677776654 6899999999999998888777665421 12334566542221111 000000 00
Q ss_pred ---c--------cC-----ccccCCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeec
Q psy12347 178 ---R--------VS-----FSEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 241 (428)
Q Consensus 178 ---~--------vs-----~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~ 241 (428)
| +. ...+.......|++|++.++.+++++.+-- .. .-++..||+-+ +.=+...|.+....
T Consensus 334 ~~~~~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGg--fd-~~F~~~ED~Dl-~lR~~~~G~ki~~~ 409 (657)
T 4fix_A 334 HAEYDHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQ--PL-PLFIKWDDADY-GLRAAEHGYPTVTL 409 (657)
T ss_dssp TCCSCEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCS--CC-SCSSSSHHHHH-HHHHHHTTCCEEEE
T ss_pred cccccccccccccccccccccccccceeccccchhHhHhhHHHHHHhCC--Ch-hHhccCcHHHH-HHHHHHcCCeEEEE
Confidence 0 00 011122234468899999999999988621 22 33456799998 77777888775444
Q ss_pred C
Q psy12347 242 S 242 (428)
Q Consensus 242 ~ 242 (428)
+
T Consensus 410 p 410 (657)
T 4fix_A 410 P 410 (657)
T ss_dssp E
T ss_pred C
Confidence 3
No 9
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=85.95 E-value=20 Score=36.00 Aligned_cols=186 Identities=12% Similarity=0.016 Sum_probs=97.5
Q ss_pred cEEEEEEcCCCCH-HHHH----HHHHHhcc-cceEEEEecCC-ChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHH
Q psy12347 41 VYLVLIHSAPYNY-ERRR----LIRNTWGP-RVSLYFFIGET-DPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMV 113 (428)
Q Consensus 41 ~lli~V~S~~~~~-~~R~----~IR~TW~~-~~~~~F~vG~~-~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~ 113 (428)
.+-|+|.+.-... ..+. .+++|... ...+++|-..+ ++.. ....+.+..|-.+.... |.- ...+
T Consensus 67 ~vSVIIp~yN~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~----~~~~~~~~~v~vi~~~~---n~G--~~~A 137 (501)
T 2ffu_A 67 ATSVVITFHNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPED----GALLGKIEKVRVLRNDR---REG--LMRS 137 (501)
T ss_dssp CEEEEEEESSCCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHH----HHGGGGBTTEEEEECSS---CCH--HHHH
T ss_pred CEEEEEEeCcCcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHH----HHHHhcCCCEEEEECCC---CcC--HHHH
Confidence 5677777755443 2333 23344333 34677765544 4433 22234566665554333 222 2345
Q ss_pred HHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEee--cCCcc--------cccCCCCccc----
Q psy12347 114 FKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVW--EKSPV--------LRTYRSKWRV---- 179 (428)
Q Consensus 114 l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~--~~~~~--------~R~~~~kw~v---- 179 (428)
+....+.. ..+|++.+|+|+.+...-|..++..... ....++|..+. ..... .+. .-.|..
T Consensus 138 ~N~G~~~A-~gd~i~flD~D~~~~p~~L~~ll~~~~~---~~~~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 212 (501)
T 2ffu_A 138 RVRGADAA-QAKVLTFLDSHCECNEHWLEPLLERVAE---DRTRVVSPIIDVINMDNFQYVGASADLKG-GFDWNLVFKW 212 (501)
T ss_dssp HHHHHHHC-CSSEEEECCSSEEECTTCHHHHHHHHHH---CTTEEEEEEEEEECTTTCCEECBCSSEEE-EECTTCCEEE
T ss_pred HHHHHHhc-CCCEEEEECCCcccCccHHHHHHHHHHh---CCCeEEEeeeccCcCCCceeecCCcccce-EeeecCCCcc
Confidence 55555665 6899999999999998888777765532 12224444311 11100 000 001111
Q ss_pred ---Ccc-------ccCCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 180 ---SFS-------EYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 180 ---s~~-------~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
+.. .......-+++.|++.+++++++..+-.--.. ......||+.+ .+-+...|.+....+
T Consensus 213 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~iGgfde~-~~~~g~ED~dl-~~Rl~~~G~~i~~~p 283 (501)
T 2ffu_A 213 DYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMM-MDVWGGENLEI-SFRVWQCGGSLEIIP 283 (501)
T ss_dssp EECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHHHHHTTCCCTT-CCSSSSHHHHH-HHHHHHTTCEEEEEE
T ss_pred ccCCHHHHhhccCCCCCcccCccccceEEEEEHHHHHHhCCCCcc-ccccCcchHHH-HHHHHhcCCeEEEcc
Confidence 100 00111123567899999999999887421111 22233899998 665666776654443
No 10
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=82.86 E-value=14 Score=38.31 Aligned_cols=183 Identities=9% Similarity=0.018 Sum_probs=93.7
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc---cceEEEEecCCChhHHHHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP---RVSLYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWV 117 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~---~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~ 117 (428)
.+-|+|.+.-.....++.|..--.+ .+.++.+-..+.....+.+++-.+.+..|.... .. |.- .-.+++..
T Consensus 376 ~vsiii~~yn~~~~l~~~l~s~~~q~~~~~eiivvdd~S~d~t~~~~~~~~~~~~~i~~~~-~~---n~G--~~~a~n~g 449 (625)
T 2z86_A 376 LVSIYIPAYNCSKYIVRCVESALNQTITDLEVCICDDGSTDDTLRILQEHYANHPRVRFIS-QK---NKG--IGSASNTA 449 (625)
T ss_dssp SEEEEEEESSCTTTHHHHHHHHHSSSCCSEEEEEEEESCSSSHHHHHHHHHTTCTTEEEEE-EC---CCC--HHHHHHHH
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHhCcCCCeEEEEEECcCChhHHHHHHHHHhhCCcEEEEe-CC---CCC--HHHHHHHH
Confidence 5666666644333344444433333 567776665553333444544455566666553 22 221 22345555
Q ss_pred HhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEEee-c-CCcccccCCCCcccCccccC-CCCCcCccc
Q psy12347 118 VYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSIVW-E-KSPVLRTYRSKWRVSFSEYR-DHFYPPHCH 194 (428)
Q Consensus 118 ~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~~~-~-~~~~~R~~~~kw~vs~~~y~-~~~yP~y~~ 194 (428)
.+.+ +.+|++.+|+|.++..+.|...+..... ...-..++|.... . .+...... ..| + .+. ......++.
T Consensus 450 ~~~a-~g~~i~~ld~D~~~~~~~l~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~-~~~--~--~~~~~~~~~~~~~ 522 (625)
T 2z86_A 450 VRLC-RGFYIGQLDSDDFLEPDAVELCLDEFRK-DLSLACVYTTNRNIDREGNLISNG-YNW--P--IYSREKLTSAMIC 522 (625)
T ss_dssp HHHC-CSSEEEECCTTCEECTTHHHHHHHHHHH-CTTCSEEEEEEEEECTTSCEEEEC-CCC--S--SCCHHHHTTSCCC
T ss_pred HHhc-CCCEEEEECCCcccChhHHHHHHHHHHh-CCCeeEEEeeeEEECCCCCEeccC-ccc--c--cCCHHHHhhcccC
Confidence 5665 6899999999999998888777654421 0122334443211 1 11111110 001 0 011 011224556
Q ss_pred cceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeec
Q psy12347 195 GNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKF 241 (428)
Q Consensus 195 G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~ 241 (428)
|++.++.++++.++-. .. ..+...||.-+ .+-+...| ....+
T Consensus 523 ~~~~~~~r~~~~~~gg--fd-~~~~~~eD~dl-~~r~~~~g-~~~~~ 564 (625)
T 2z86_A 523 HHFRMFTARAWNLTEG--FN-ESISNAVDYDM-YLKLSEVG-PFKHI 564 (625)
T ss_dssp CSCEEEEHHHHTTTTC--CC-SSCSSCHHHHH-HHHHTTTS-CEEEE
T ss_pred CceEEEEHHHHHHhCC--CC-CccCChHHHHH-HHHHHHhC-CEEEe
Confidence 7788888887654421 11 33456799988 55555566 44433
No 11
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=69.52 E-value=73 Score=34.24 Aligned_cols=126 Identities=9% Similarity=-0.037 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHhhCCCccEEEEeCCceEecHHHHHHHHHhccCCCCCcceEEEEE-eecCCcc-cccCCCCcc-cCcc-
Q psy12347 107 TYKHTMVFKWVVYNCPHVKYVFKLDDDVFMNVIQLDELLTRTLSPHGTRNLLMCSI-VWEKSPV-LRTYRSKWR-VSFS- 182 (428)
Q Consensus 107 t~K~~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L~~~L~~~~~~~~~~~~~~g~~-~~~~~~~-~R~~~~kw~-vs~~- 182 (428)
..|.- .++...+.+ +.+|++.+|+|+.+..+.|.+.+..... .+.-...++. ...+..+ .++. +.+. .+.+
T Consensus 224 ~GKa~-alN~gl~~a-~gd~Il~lDaD~~~~pd~L~~lv~~~~~--dp~v~~V~~~~~~~~~~~~~~~~-~~~~~~~~~~ 298 (802)
T 4hg6_A 224 HAKAG-NMSAALERL-KGELVVVFDADHVPSRDFLARTVGYFVE--DPDLFLVQTPHFFINPDPIQRNL-ALGDRCPPEN 298 (802)
T ss_dssp SHHHH-HHHHHHHHC-CCSEEEECCTTEEECTTHHHHHHHHHHH--SSSCCEEECCCCBSSCCHHHHHH-TCCTTSCCTT
T ss_pred CcchH-HHHHHHHhc-CCCEEEEECCCCCcChHHHHHHHHHHhc--CCCeEEEeccEEEeCCchHhhhh-hHHhhhhHHH
Confidence 34443 466666776 7899999999999998888877765521 1122233332 1111111 1110 0000 0000
Q ss_pred -c-cC------CCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCCceeecC
Q psy12347 183 -E-YR------DHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNLTHAKFS 242 (428)
Q Consensus 183 -~-y~------~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i~~~~~~ 242 (428)
. +. ...-.+++.|++.++.+++++.+- .. ....-.||..+ +.-+...|.+....+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~vG---gf-~~~~~~ED~~l-~~rl~~~G~ri~~~~ 361 (802)
T 4hg6_A 299 EMFYGKIHRGLDRWGGAFFCGSAAVLRRRALDEAG---GF-AGETITEDAET-ALEIHSRGWKSLYID 361 (802)
T ss_dssp HHHHHTHHHHHHHTTCCCCCSSSEEEEHHHHHHHT---TC-CCSSSSHHHHH-HHHHHTTTCCEEECC
T ss_pred HHHHHHHHhhHhhcCCceecccchhhhHHHHHHcC---Cc-CCCCcchHHHH-HHHHHHcCCeEEEec
Confidence 0 00 001123567899999999998762 11 12233599998 888888887765554
No 12
>2c0n_A A197; thermophil protein, thermophilic virus, STIV, sulfolobus turreted ICOS virus; 1.86A {Sulfolobus turreted icosahedral virus}
Probab=66.14 E-value=32 Score=30.42 Aligned_cols=129 Identities=8% Similarity=0.043 Sum_probs=71.5
Q ss_pred HHHHHHHhhCCCEEEecccCcCCchhHHHHHHHHHHHhhCCCccEEEEeCCc---eEecHHHHHHHHHhccCCCCCcceE
Q psy12347 82 TRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVFKLDDD---VFMNVIQLDELLTRTLSPHGTRNLL 158 (428)
Q Consensus 82 ~~l~~E~~~~~DIl~~d~~D~y~nlt~K~~~~l~w~~~~c~~~~~vlk~DDD---~~vn~~~L~~~L~~~~~~~~~~~~~ 158 (428)
-.|+.+..+.|==+++.+.++.-... .-.+.=.|+.+. ++++++.+|.| +-.+++.+.++|.. ..+..
T Consensus 15 l~l~~~l~~~gi~~~l~~~~SlI~ra-RN~lv~~Fl~~~--~~dhllfIDAD~~~I~FdPe~V~rLl~~------g~DVV 85 (203)
T 2c0n_A 15 LPLIDFLVKNDIEYVILSRRNHVAVQ-REIALDMFLEMK--DYDTLAFLDEDVVPIEIDFQKVEAKFNE------GYDVV 85 (203)
T ss_dssp HHHHHHHHHTTCCEEEECCCSCHHHH-HHHHHHHHHHCT--TCCEEEEECTTEEEEECCHHHHHHHHHH------TCSEE
T ss_pred hHHHHHHHhCCCeEEEEccccchHHH-HHHHHHHHHhcC--CCCEEEEEeCCCCccccCHHHHHHHHhC------CCCEE
Confidence 34555555544335555553322221 222222355432 68999999999 99999999999954 35666
Q ss_pred EEEEeecCCcccccCCCCcccCccccCCCCCc---CccccceEEeCHHHHHHHHHHhhc---c--CCCCCcchhhh
Q psy12347 159 MCSIVWEKSPVLRTYRSKWRVSFSEYRDHFYP---PHCHGNILLYSPDVVFKLYQHLQT---D--QEYFWVDDVFI 226 (428)
Q Consensus 159 ~g~~~~~~~~~~R~~~~kw~vs~~~y~~~~yP---~y~~G~~YvlS~~~v~~l~~~~~~---~--~~~~~~eDv~i 226 (428)
.|.+..++.. .. +.+ ...|.....+ .||++|.-++++.++++|.+..-. . .+-.--|||++
T Consensus 86 ~GsYp~K~~~---~~-s~~---a~~y~~~i~~~~V~d~~tGF~lIkR~V~e~L~~p~fl~~~~~e~~~~~gEdv~F 154 (203)
T 2c0n_A 86 CGYYYLKTLR---GY-SVY---RKDWEKEIFDGEVNGCGLGFTFIKREFLEKIKRPAFLAFKPIESPHWIGEDVYF 154 (203)
T ss_dssp EEECBCTTSS---SB-SEE---SSSBCSSCCCEECSEECSSEEEEEHHHHTTSCSSCCCC---------CCHHHHH
T ss_pred EEEeeccCCC---cc-chH---HHHHHHhccCceeeeccccEEEEhHHHHHHHhhhhhhcCChhhhccccCCceEE
Confidence 6666333311 00 000 1122222111 488889999999999988554321 0 11122488887
No 13
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=53.09 E-value=24 Score=27.98 Aligned_cols=51 Identities=14% Similarity=0.150 Sum_probs=40.7
Q ss_pred EEcCCCCHHHHHHHHHHhcc--cceEEEEecCCChhHHHHHHHHHhhCCCEEE
Q psy12347 46 IHSAPYNYERRRLIRNTWGP--RVSLYFFIGETDPSNQTRLDIESETYHDIVQ 96 (428)
Q Consensus 46 V~S~~~~~~~R~~IR~TW~~--~~~~~F~vG~~~~~~~~~l~~E~~~~~DIl~ 96 (428)
|.|-....+-|..||+-|-. ...++-++...+.++.....+|+++.|=-+.
T Consensus 55 vrtvedkedfrenireiwerypqldvvvivttddkewikdfieeakergvevf 107 (162)
T 2l82_A 55 VRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVF 107 (162)
T ss_dssp EEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEE
T ss_pred eeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEE
Confidence 45555667789999999998 7777777777788899999999998876554
No 14
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=49.57 E-value=1.3e+02 Score=25.96 Aligned_cols=73 Identities=14% Similarity=0.073 Sum_probs=44.1
Q ss_pred ceEEEEEccCCcchhhhhHhhhhcCCCeEEeeeccCCCChHHHHHHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 347 VSVYFFIGETDPSNQTRLDIESETYHDIVQGRFWDSYRNLTYKHTMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 347 ~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~~~~~d~y~nlt~K~~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
..++.+-..+.+...+.+++-++++..|.... .+ -.+. -.+.+...+.+ +.+|++..|+|.++..+.|..+++
T Consensus 35 ~eiIvvDd~S~d~t~~~~~~~~~~~~~i~~i~-~~-n~G~----~~a~N~g~~~a-~g~~i~~lD~Dd~~~~~~l~~l~~ 107 (240)
T 3bcv_A 35 IEIILIDDESPDNCPKICDDYAAQYPNIKVIH-KK-NAGL----GMACNSGLDVA-TGEYVAFCDSDDYVDSDMYMTMYN 107 (240)
T ss_dssp EEEEEEECCCSSSHHHHHHHHHHHCSSEEEEE-CC-CCCH----HHHHHHHHHHC-CSSEEEECCTTCCCCTTHHHHHHH
T ss_pred eEEEEEECCCCcCHHHHHHHHHhhCCCEEEEE-CC-CCCh----HHHHHHHHHHc-CCCEEEEECCCCcCCHHHHHHHHH
Confidence 44555544343444455555556666665553 22 1232 23445556666 589999999999998877776654
No 15
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=37.37 E-value=66 Score=30.88 Aligned_cols=30 Identities=10% Similarity=0.045 Sum_probs=22.6
Q ss_pred HHHHHHHHhhCCCccEEEEeCCceEecHHHH
Q psy12347 111 TMVFKWVVYNCPHVKYVFKLDDDVFMNVIQL 141 (428)
Q Consensus 111 ~~~l~w~~~~c~~~~~vlk~DDD~~vn~~~L 141 (428)
..++.++-+.. ++++++.+|||+.+.++=+
T Consensus 88 ~~al~~vf~~~-~~~~vIiLEDDl~~spdF~ 117 (343)
T 1fo8_A 88 RWALGQIFHNF-NYPAAVVVEDDLEVAPDFF 117 (343)
T ss_dssp HHHHHHHHTTS-CCSEEEEEETTEEECTTHH
T ss_pred HHHHHHHHHhc-cCCEEEEEcCCCeECHHHH
Confidence 34566665544 5899999999999988654
No 16
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=29.26 E-value=59 Score=25.71 Aligned_cols=53 Identities=19% Similarity=0.167 Sum_probs=36.4
Q ss_pred EEEECCCCChHHHHHHHHHhhc--cceEEEEEccCCcchhhhhHhhhhcCCCeEE
Q psy12347 324 VLIHSAPYNYDKRRLIRNTWGT--RVSVYFFIGETDPSNQTRLDIESETYHDIVQ 376 (428)
Q Consensus 324 i~V~S~~~~~~~R~~iR~TW~~--~~~~~F~~g~~~~~~~~~l~~E~~~~~Dii~ 376 (428)
+-|.|....-+-|..||+-|.. +..++.++...+.++-+...+|+...|=-+.
T Consensus 53 vdvrtvedkedfrenireiwerypqldvvvivttddkewikdfieeakergvevf 107 (162)
T 2l82_A 53 VDVRTVEDKEDFRENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVF 107 (162)
T ss_dssp CEEEECCSHHHHHHHHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEE
T ss_pred CceeeeccHHHHHHHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEE
Confidence 3456666677789999999976 4566666666566666666677777765443
No 17
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=26.08 E-value=44 Score=31.41 Aligned_cols=181 Identities=9% Similarity=-0.069 Sum_probs=83.9
Q ss_pred cEEEEEEcCCCCHHHHHHHHHHhcc----cceEEEEecCC-ChhHHHHHHHHHhhCCCEEEe--ccc-CcCCchhHHHHH
Q psy12347 41 VYLVLIHSAPYNYERRRLIRNTWGP----RVSLYFFIGET-DPSNQTRLDIESETYHDIVQG--RFW-DSYRNLTYKHTM 112 (428)
Q Consensus 41 ~lli~V~S~~~~~~~R~~IR~TW~~----~~~~~F~vG~~-~~~~~~~l~~E~~~~~DIl~~--d~~-D~y~nlt~K~~~ 112 (428)
.+-|+|++.-....-+..|..--.+ ...++.+-..+ +.. . .+. ++++.-+.. ... ..-.|.- |. .
T Consensus 49 ~vSViIp~yN~~~~l~~~l~sl~~q~~~~~~eiivVDdgS~D~t-~-~~~---~~~~~~~~~~~~~~~~~~~n~G-~~-~ 121 (329)
T 3ckj_A 49 TISVVLPALDEEDTIGSVIDSISPLVDGLVDELIVLDSGSTDDT-E-IRA---VAAGARVVSREQALPEVPIRPG-KG-E 121 (329)
T ss_dssp CEEEEEEESSCTTTHHHHHHHHGGGBTTTBSEEEEEECSCCSSH-H-HHH---HHTTCEEEEHHHHCTTSCCCCS-HH-H
T ss_pred cEEEEEeeCCCHHHHHHHHHHHHHhhCCCCcEEEEEeCCCCchH-H-HHH---HHhhhhhccceeeeccCCCCCC-HH-H
Confidence 5667776654433334443332222 46666666544 332 2 222 234433211 111 1122222 22 2
Q ss_pred HHHHHHhhCCCccEEEEeCCceE-ecHHHHHHHHHhccCCCCCcceEEEEEeecC--Ccc----cccCCCCc---ccC--
Q psy12347 113 VFKWVVYNCPHVKYVFKLDDDVF-MNVIQLDELLTRTLSPHGTRNLLMCSIVWEK--SPV----LRTYRSKW---RVS-- 180 (428)
Q Consensus 113 ~l~w~~~~c~~~~~vlk~DDD~~-vn~~~L~~~L~~~~~~~~~~~~~~g~~~~~~--~~~----~R~~~~kw---~vs-- 180 (428)
+++...+.+ +.+|++.+|+|.. +..+.|.+++..... ...-..++|...... ... .+...++. ...
T Consensus 122 a~n~g~~~a-~gd~i~~lD~D~~~~~p~~l~~l~~~l~~-~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (329)
T 3ckj_A 122 ALWRSLAAS-RGDIVVFVDSDLINPHPMFVPWLVGPLLT-GDGVHLVKSFYRRPLNVGDAGGGAGATGGGRVTELVARPL 199 (329)
T ss_dssp HHHHHHHHC-CCSEEEECCTTEESCCTTHHHHHHHHHHS-CSSCCEEEEEEECC---------------CHHHHHTHHHH
T ss_pred HHHHHHHhC-CCCEEEEECCCCCCcChHHHHHHHHHHHh-CCCccEEEEEecccccCCcccccccccCCCceehhhHHHH
Confidence 344444555 6899999999999 888877777665211 023355666542111 000 11111111 000
Q ss_pred -ccccCCCCCcCccccceEEeCHHHHHHHHHHhhccCCCCCcchhhhHHHHHHhcCC
Q psy12347 181 -FSEYRDHFYPPHCHGNILLYSPDVVFKLYQHLQTDQEYFWVDDVFITGIVFSKLNL 236 (428)
Q Consensus 181 -~~~y~~~~yP~y~~G~~YvlS~~~v~~l~~~~~~~~~~~~~eDv~itG~~~~~~~i 236 (428)
...++...-..++.|+.+++++++++.+- . ..-+ .+|..+.-.++...|.
T Consensus 200 ~~~~~~~~~~~~~~~~g~~~~rr~~l~~i~----f-~~~~-~~D~~l~~r~~~~~g~ 250 (329)
T 3ckj_A 200 LAALRPELGCILQPLGGEYAATRELLTSVP----F-APGY-GVEIGLLVDTFDRLGL 250 (329)
T ss_dssp HHHHCGGGGGCSCTTCSCEEEEHHHHTTSC----B-CCGG-GHHHHHHHHHHHHHCG
T ss_pred HHHhhhhhccccCCCccceeeeHHHHHhCC----C-CCCC-cccHHHHHHHHHhcCC
Confidence 01111111124567788899999998772 1 1112 3777663334444564
No 18
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=26.05 E-value=3.2e+02 Score=23.55 Aligned_cols=35 Identities=11% Similarity=0.112 Sum_probs=26.8
Q ss_pred HHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 391 TMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 391 ~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
-.+++...+.+ +.+|++..|+|.++..+.|..+++
T Consensus 77 ~~a~N~gi~~a-~g~~i~~lD~Dd~~~~~~l~~~~~ 111 (255)
T 1qg8_A 77 AALINQAIEMA-EGEYITYATDDNIYMPDRLLKMVR 111 (255)
T ss_dssp HHHHHHHHHHC-CCSEEEEEETTEEECTTHHHHHHH
T ss_pred HHHHHHHHHHc-CCCEEEEeCCCCccChHHHHHHHH
Confidence 34566667776 689999999999998777766553
No 19
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=25.54 E-value=3.8e+02 Score=27.88 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=27.3
Q ss_pred HHHHHHHHHhCCCccEEEEcCCceEeeHHHHHHHHh
Q psy12347 391 TMVFKWVVYNCPHVKYVLKLDDDVFMNVIQLDELLT 426 (428)
Q Consensus 391 ~~~l~w~~~~c~~~~~~~k~DDD~~v~~~~l~~~L~ 426 (428)
=.+++.+.... +++||+..|||+.+..+.|..+++
T Consensus 257 N~Gl~~A~g~~-~~dyIlfLD~D~~~~pd~L~~ll~ 291 (657)
T 4fix_A 257 SRVMYEALKNT-DCQQILFMDDDIRLEPDSILRVLA 291 (657)
T ss_dssp HHHHHHHHHHC-CCSEEEEECSSEEECTHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCEEEEECCCCccChhHHHHHHH
Confidence 44677776653 689999999999999887777654
Done!