RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12347
         (428 letters)



>d1khca_ b.34.9.2 (A:) DNA methyltransferase DNMT3B {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 137

 Score = 25.8 bits (56), Expect = 5.9
 Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 16/68 (23%)

Query: 229 IVFSKLNLTHAKFSWWPGHDEPIVSLFNNWDLRKYDPHKTLFALLWEPDFVRLTSSDSTW 288
           +V+ K+      FSWWP        + +     K      +  + W  D         + 
Sbjct: 14  LVWGKIK----GFSWWPAM------VVSWKATSKRQAMPGMRWVQWFGD------GKFSE 57

Query: 289 QSSSDLLP 296
            S+  L+ 
Sbjct: 58  ISADKLVA 65


>d1spva_ c.50.1.2 (A:) Hypothetical protein YmbD {Escherichia coli
           [TaxId: 562]}
          Length = 172

 Score = 26.3 bits (57), Expect = 6.4
 Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)

Query: 16  PPDDSTRLINLTNFEFLINPPCLDTVYLVLIHSAPYN-YER 55
           P   +  +   T  EF+      + VY V       + YER
Sbjct: 127 PRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYER 167


>d2jn9a1 b.45.3.1 (A:2-97) Uncharacterized protein YkvR {Bacillus
           subtilis [TaxId: 1423]}
          Length = 96

 Score = 24.9 bits (54), Expect = 7.5
 Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 344 GTRVSVYFFIGETDPSNQTRLD--IESETYHDI 374
              + +  +  E++P  +      + SETYHDI
Sbjct: 8   NVTLEMAAYQEESEPKRKIAFTLNVTSETYHDI 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.139    0.457 

Gapped
Lambda     K      H
   0.267   0.0583    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,772,483
Number of extensions: 86818
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 6
Length of query: 428
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 340
Effective length of database: 1,199,356
Effective search space: 407781040
Effective search space used: 407781040
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.9 bits)