Query psy12348
Match_columns 178
No_of_seqs 150 out of 1147
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 16:43:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12348.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12348hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02742 protein tyrosine phos 100.0 4.9E-57 1.1E-61 349.6 17.9 171 8-178 62-246 (303)
2 PHA02740 protein tyrosine phos 100.0 7.5E-57 1.6E-61 346.8 16.2 165 8-178 63-238 (298)
3 PHA02747 protein tyrosine phos 100.0 8E-56 1.7E-60 343.9 17.3 171 8-178 61-246 (312)
4 PHA02738 hypothetical protein; 100.0 9.1E-56 2E-60 344.5 16.9 171 8-178 59-244 (320)
5 PHA02746 protein tyrosine phos 100.0 7.2E-55 1.6E-59 339.8 17.1 171 7-178 60-264 (323)
6 smart00194 PTPc Protein tyrosi 100.0 1.6E-51 3.5E-56 313.6 18.9 169 9-178 38-210 (258)
7 cd00047 PTPc Protein tyrosine 100.0 2.5E-50 5.4E-55 302.5 18.2 170 8-178 9-183 (231)
8 KOG4228|consensus 100.0 1.1E-50 2.5E-55 342.4 12.3 173 3-178 570-747 (1087)
9 KOG0790|consensus 100.0 1E-50 2.2E-55 314.7 7.0 174 4-178 278-468 (600)
10 KOG0792|consensus 100.0 9.7E-49 2.1E-53 328.2 16.3 170 8-177 904-1079(1144)
11 KOG0791|consensus 100.0 1.2E-47 2.7E-52 292.4 12.6 174 4-178 128-304 (374)
12 PF00102 Y_phosphatase: Protei 100.0 5.5E-47 1.2E-51 284.4 15.4 171 8-178 11-187 (235)
13 COG5599 PTP2 Protein tyrosine 100.0 4.3E-46 9.4E-51 272.8 13.4 169 7-178 62-235 (302)
14 KOG0793|consensus 100.0 2.7E-46 5.8E-51 302.5 7.3 172 5-178 763-944 (1004)
15 PRK15375 pathogenicity island 100.0 1.3E-43 2.8E-48 282.0 15.8 162 8-178 308-483 (535)
16 KOG4228|consensus 100.0 3.2E-40 6.9E-45 279.4 12.1 166 9-178 864-1035(1087)
17 KOG0789|consensus 100.0 1.6E-38 3.4E-43 256.8 15.5 170 8-178 137-316 (415)
18 smart00404 PTPc_motif Protein 99.6 3.8E-15 8.2E-20 98.0 4.8 53 126-178 1-56 (105)
19 smart00012 PTPc_DSPc Protein t 99.6 3.8E-15 8.2E-20 98.0 4.8 53 126-178 1-56 (105)
20 PTZ00242 protein tyrosine phos 99.3 2.7E-12 5.8E-17 91.5 4.0 94 39-178 16-115 (166)
21 PTZ00393 protein tyrosine phos 99.1 5.5E-10 1.2E-14 82.9 6.9 113 21-177 71-186 (241)
22 cd00127 DSPc Dual specificity 98.6 2.8E-08 6.1E-13 68.5 3.4 51 125-178 48-98 (139)
23 KOG2836|consensus 98.5 5.8E-07 1.3E-11 60.6 7.2 94 38-176 16-112 (173)
24 COG2453 CDC14 Predicted protei 98.1 3.2E-06 6.9E-11 61.2 4.1 43 134-177 79-121 (180)
25 KOG1720|consensus 98.0 8.5E-06 1.8E-10 59.2 4.9 48 127-177 116-163 (225)
26 smart00195 DSPc Dual specifici 98.0 5.7E-06 1.2E-10 57.0 4.0 31 145-178 65-95 (138)
27 PF05706 CDKN3: Cyclin-depende 98.0 4.7E-06 1E-10 58.7 2.7 119 23-177 23-149 (168)
28 PF00782 DSPc: Dual specificit 97.8 2.2E-05 4.8E-10 53.6 3.0 33 142-177 57-89 (133)
29 PF03162 Y_phosphatase2: Tyros 97.6 5.5E-05 1.2E-09 53.9 2.7 51 125-177 57-107 (164)
30 PF14566 PTPlike_phytase: Inos 97.2 0.00018 3.9E-09 50.4 1.5 41 136-178 101-141 (149)
31 PRK12361 hypothetical protein; 96.9 0.0013 2.8E-08 55.6 4.2 40 137-177 152-191 (547)
32 COG5350 Predicted protein tyro 96.7 0.0032 7E-08 43.7 4.5 33 143-176 76-108 (172)
33 KOG2283|consensus 96.6 0.0023 4.9E-08 52.3 3.8 44 133-177 78-123 (434)
34 TIGR01244 conserved hypothetic 96.4 0.0028 6E-08 43.6 2.6 31 143-177 71-101 (135)
35 KOG1718|consensus 96.4 0.0027 5.9E-08 44.8 2.5 31 144-177 80-110 (198)
36 KOG1717|consensus 96.0 0.0076 1.6E-07 45.7 3.3 29 146-177 239-267 (343)
37 PF13350 Y_phosphatase3: Tyros 95.9 0.0063 1.4E-07 43.2 2.5 39 39-78 19-57 (164)
38 PF04273 DUF442: Putative phos 95.6 0.0065 1.4E-07 40.3 1.6 31 143-177 71-101 (110)
39 KOG1716|consensus 95.5 0.011 2.5E-07 45.8 2.6 31 144-177 141-171 (285)
40 KOG1719|consensus 95.3 0.055 1.2E-06 37.9 5.2 39 138-177 87-125 (183)
41 PLN02727 NAD kinase 95.2 0.019 4.2E-07 50.7 3.4 35 142-178 324-358 (986)
42 COG2365 Protein tyrosine/serin 94.5 0.039 8.3E-07 42.0 3.2 32 144-177 121-152 (249)
43 KOG4471|consensus 92.7 0.13 2.8E-06 43.4 3.4 17 160-176 373-389 (717)
44 PHA02747 protein tyrosine phos 92.5 0.037 8E-07 43.6 0.1 58 1-58 78-142 (312)
45 PHA02742 protein tyrosine phos 90.4 0.069 1.5E-06 41.9 -0.4 58 1-58 78-141 (303)
46 PHA02738 hypothetical protein; 89.2 0.069 1.5E-06 42.2 -1.2 58 1-58 75-138 (320)
47 PHA02746 protein tyrosine phos 89.0 0.095 2.1E-06 41.5 -0.6 57 2-58 99-160 (323)
48 PHA02740 protein tyrosine phos 88.6 0.1 2.2E-06 40.9 -0.7 57 2-58 77-137 (298)
49 smart00194 PTPc Protein tyrosi 85.0 0.2 4.3E-06 38.1 -0.8 57 2-58 55-117 (258)
50 KOG2386|consensus 84.9 1.6 3.4E-05 35.5 4.2 36 140-176 100-139 (393)
51 cd00047 PTPc Protein tyrosine 81.9 0.38 8.2E-06 35.9 -0.3 57 2-58 27-89 (231)
52 KOG1089|consensus 78.8 2.5 5.3E-05 36.0 3.4 17 160-176 343-359 (573)
53 PF06602 Myotub-related: Myotu 77.8 2.2 4.7E-05 34.3 2.7 17 160-176 230-246 (353)
54 COG3453 Uncharacterized protei 75.0 6.1 0.00013 26.6 3.8 29 143-175 72-100 (130)
55 KOG1572|consensus 74.7 6 0.00013 29.9 4.1 31 145-177 134-164 (249)
56 COG5599 PTP2 Protein tyrosine 65.6 2.2 4.9E-05 32.7 0.2 58 2-60 80-140 (302)
57 COG0607 PspE Rhodanese-related 63.1 4.9 0.00011 25.7 1.5 16 160-176 60-75 (110)
58 cd01523 RHOD_Lact_B Member of 62.3 5.8 0.00013 25.1 1.7 16 160-176 60-75 (100)
59 PF02061 Lambda_CIII: Lambda P 60.9 12 0.00025 20.0 2.3 24 129-152 2-25 (45)
60 PF00102 Y_phosphatase: Protei 59.5 1.3 2.8E-05 32.7 -2.0 56 2-57 28-89 (235)
61 PF06165 Glyco_transf_36: Glyc 59.3 48 0.001 21.7 5.8 41 96-136 48-90 (110)
62 KOG1530|consensus 57.8 11 0.00024 25.8 2.5 28 148-176 75-103 (136)
63 COG3564 Uncharacterized protei 51.0 27 0.00058 22.5 3.2 25 145-172 11-35 (116)
64 cd01448 TST_Repeat_1 Thiosulfa 46.8 31 0.00068 22.5 3.4 31 143-175 63-93 (122)
65 PF10727 Rossmann-like: Rossma 46.8 30 0.00065 23.4 3.3 28 146-173 80-108 (127)
66 cd01443 Cdc25_Acr2p Cdc25 enzy 44.1 18 0.00039 23.5 1.9 16 160-175 65-80 (113)
67 KOG1147|consensus 43.4 4.1 8.8E-05 34.5 -1.6 28 39-66 475-502 (712)
68 PLN02160 thiosulfate sulfurtra 43.1 34 0.00073 23.3 3.1 16 160-176 80-95 (136)
69 cd01518 RHOD_YceA Member of th 42.0 18 0.0004 22.8 1.6 16 160-176 60-75 (101)
70 cd01526 RHOD_ThiF Member of th 41.7 20 0.00044 23.6 1.8 16 160-176 71-86 (122)
71 cd01533 4RHOD_Repeat_2 Member 39.9 22 0.00049 22.8 1.8 15 160-175 65-79 (109)
72 TIGR03865 PQQ_CXXCW PQQ-depend 39.6 16 0.00036 25.7 1.2 17 160-176 115-131 (162)
73 cd01444 GlpE_ST GlpE sulfurtra 39.5 25 0.00053 21.7 1.9 13 160-172 55-67 (96)
74 KOG0791|consensus 39.3 11 0.00023 30.4 0.1 30 2-31 151-182 (374)
75 cd01447 Polysulfide_ST Polysul 38.8 24 0.00052 22.1 1.8 15 160-175 60-74 (103)
76 COG4992 ArgD Ornithine/acetylo 35.7 60 0.0013 26.7 3.9 39 137-178 196-236 (404)
77 PF02035 Coagulin: Coagulin; 35.3 14 0.00031 25.0 0.3 29 34-66 98-127 (174)
78 cd01530 Cdc25 Cdc25 phosphatas 34.0 28 0.00061 23.1 1.6 16 160-175 67-82 (121)
79 cd01531 Acr2p Eukaryotic arsen 32.6 32 0.0007 22.2 1.7 16 160-175 61-76 (113)
80 cd01520 RHOD_YbbB Member of th 32.3 74 0.0016 21.1 3.5 17 160-176 85-101 (128)
81 cd01528 RHOD_2 Member of the R 30.0 37 0.00081 21.3 1.6 15 160-175 57-71 (101)
82 cd01525 RHOD_Kc Member of the 29.8 25 0.00054 22.2 0.7 15 161-176 65-79 (105)
83 COG4004 Uncharacterized protei 28.8 86 0.0019 20.0 2.9 39 137-175 7-45 (96)
84 PF10339 Vel1p: Yeast-specific 28.6 53 0.0011 23.4 2.2 38 40-77 52-89 (203)
85 COG0084 TatD Mg-dependent DNas 28.1 81 0.0018 24.2 3.3 23 145-170 112-134 (256)
86 TIGR00167 cbbA ketose-bisphosp 28.1 79 0.0017 24.7 3.3 24 148-173 195-218 (288)
87 cd01519 RHOD_HSP67B2 Member of 28.1 68 0.0015 20.1 2.6 15 160-175 65-79 (106)
88 cd01532 4RHOD_Repeat_1 Member 27.9 45 0.00097 20.6 1.7 13 160-172 49-61 (92)
89 COG5061 ERO1 Oxidoreductin, en 27.8 41 0.00089 27.1 1.7 19 50-68 154-172 (425)
90 COG5228 POP2 mRNA deadenylase 27.8 30 0.00066 26.0 0.9 21 42-62 176-196 (299)
91 cd01522 RHOD_1 Member of the R 27.7 91 0.002 20.3 3.2 15 160-175 63-77 (117)
92 TIGR01858 tag_bisphos_ald clas 27.7 78 0.0017 24.7 3.2 24 148-173 189-212 (282)
93 PRK10287 thiosulfate:cyanide s 27.3 96 0.0021 20.0 3.2 15 160-175 59-73 (104)
94 PRK11493 sseA 3-mercaptopyruva 26.6 56 0.0012 25.2 2.3 13 160-172 230-242 (281)
95 PF07942 N2227: N2227-like pro 26.6 52 0.0011 25.5 2.1 45 132-176 22-71 (270)
96 COG3246 Uncharacterized conser 26.4 2.3E+02 0.0049 22.4 5.4 44 125-173 43-87 (298)
97 COG0160 GabT 4-aminobutyrate a 26.2 1.3E+02 0.0027 25.3 4.3 39 137-178 234-274 (447)
98 cd01527 RHOD_YgaP Member of th 25.1 56 0.0012 20.3 1.8 13 160-172 53-65 (99)
99 PF00581 Rhodanese: Rhodanese- 24.7 1.8E+02 0.0039 18.0 4.3 28 144-171 50-77 (113)
100 cd01529 4RHOD_Repeats Member o 24.6 55 0.0012 20.3 1.7 15 160-175 55-69 (96)
101 KOG2798|consensus 24.1 72 0.0016 25.6 2.4 45 132-176 116-165 (369)
102 PF06309 Torsin: Torsin; Inte 24.0 1.3E+02 0.0029 20.4 3.5 16 160-175 50-67 (127)
103 KOG0462|consensus 24.0 55 0.0012 28.2 1.9 31 43-74 158-188 (650)
104 PRK07709 fructose-bisphosphate 24.0 98 0.0021 24.2 3.2 24 148-173 192-215 (285)
105 COG0710 AroD 3-dehydroquinate 23.9 1.6E+02 0.0035 22.3 4.2 35 140-174 155-189 (231)
106 cd01449 TST_Repeat_2 Thiosulfa 23.3 90 0.0019 20.0 2.5 30 143-175 62-91 (118)
107 PRK00142 putative rhodanese-re 23.1 1.2E+02 0.0026 24.0 3.5 15 160-175 170-184 (314)
108 KOG3020|consensus 23.0 94 0.002 24.5 2.9 27 146-172 158-185 (296)
109 KOG3059|consensus 22.8 32 0.00068 26.8 0.3 34 19-61 19-52 (292)
110 PF05265 DUF723: Protein of un 22.7 1.4E+02 0.0031 17.4 2.9 19 160-178 27-46 (60)
111 PRK08610 fructose-bisphosphate 22.5 1.1E+02 0.0024 23.9 3.2 24 148-173 192-215 (286)
112 PF05891 Methyltransf_PK: AdoM 22.2 32 0.00069 25.7 0.2 16 160-175 54-69 (218)
113 smart00450 RHOD Rhodanese Homo 22.2 1.4E+02 0.0031 17.8 3.3 13 160-172 55-67 (100)
114 PRK07998 gatY putative fructos 21.7 1.3E+02 0.0027 23.6 3.4 24 148-173 188-211 (283)
115 PF13292 DXP_synthase_N: 1-deo 21.6 75 0.0016 24.6 2.1 23 143-168 246-268 (270)
116 PRK09499 sifB secreted effecto 21.2 54 0.0012 25.2 1.2 15 49-63 19-33 (316)
117 PRK10878 hypothetical protein; 21.1 84 0.0018 19.0 1.8 32 133-165 39-71 (72)
118 cd01534 4RHOD_Repeat_3 Member 21.0 77 0.0017 19.6 1.8 12 161-172 56-67 (95)
119 PF11834 DUF3354: Domain of un 20.9 2E+02 0.0044 17.2 3.8 47 125-172 2-52 (69)
120 cd01535 4RHOD_Repeat_4 Member 20.8 1.3E+02 0.0028 20.7 3.0 12 160-171 48-59 (145)
121 PRK10425 DNase TatD; Provision 20.6 1.2E+02 0.0026 23.2 3.1 22 146-170 109-130 (258)
122 cd01521 RHOD_PspE2 Member of t 20.4 74 0.0016 20.4 1.7 13 160-172 63-75 (110)
123 KOG0333|consensus 20.1 1.3E+02 0.0027 26.1 3.2 42 133-178 245-299 (673)
124 PRK10812 putative DNAse; Provi 20.1 1.4E+02 0.003 22.9 3.3 23 146-171 112-134 (265)
No 1
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=4.9e-57 Score=349.63 Aligned_cols=171 Identities=22% Similarity=0.420 Sum_probs=158.3
Q ss_pred cCCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCCC
Q psy12348 8 WGFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPD 87 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~ 87 (178)
.+|++.|+.|......+||||||||+|+..+++||+||+|+++|++|||+||||++|.+||||++..|.++.+|.+|||.
T Consensus 62 ~~~D~tRV~L~~~~~~~dYINAsyI~g~~~~~~fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~YWp~ 141 (303)
T PHA02742 62 PCFDRNRVILKIEDGGDDFINASYVDGHNAKGRFICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMP 141 (303)
T ss_pred CCCCCCEEEeCCCCCCCCcEEEeeecCCCCCCeEEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccccCCC
Confidence 48999988888777789999999999998889999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEecEEEEEeEEEeccceeEEEEEEEeC--CceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC------
Q psy12348 88 RVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRD--SEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP------ 159 (178)
Q Consensus 88 ~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~~--~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~------ 159 (178)
.++....+|+|+|++.++....++..+.|.|++. +++|.|+||||++|||+++|.++..+++|+..|++.+.
T Consensus 142 ~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~ 221 (303)
T PHA02742 142 HERGKATHGEFKIKTKKIKSFRNYAVTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDI 221 (303)
T ss_pred CCCCceEEEEEEEEEEEEEEcCCEEEEEEEEEECCCCceEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccc
Confidence 7677789999999999999889999999999983 58999999999999999999999999999999986431
Q ss_pred ------CCCcEEEEcCCCCCCcccC
Q psy12348 160 ------TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 160 ------~~~pivVhc~~G~gRsg~F 178 (178)
..+|||||||+|+||||+|
T Consensus 222 ~~~~~~~~~PIvVHCsaGvGRTGtF 246 (303)
T PHA02742 222 KGENIVKEPPILVHCSAGLDRAGAF 246 (303)
T ss_pred cccccCCCCCeEEECCCCCchhHHH
Confidence 2489999999999999997
No 2
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=7.5e-57 Score=346.77 Aligned_cols=165 Identities=14% Similarity=0.261 Sum_probs=149.0
Q ss_pred cCCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeeccc-ccCC
Q psy12348 8 WGFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCE-KYFP 86 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~-~ywP 86 (178)
.+|++.|+.|. +++||||||||||+..+++|||||+|+++|++|||+||||++|.+||||+...| .+|. +|||
T Consensus 63 ~~~D~sRV~L~---~~~~YINAnyVdG~~~~~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e---~kc~~~YWP 136 (298)
T PHA02740 63 TRLLHRRIKLF---NDEKVLDARFVDGYDFEQKFICIINLCEDACDKFLQALSDNKVQIIVLISRHAD---KKCFNQFWS 136 (298)
T ss_pred CCccCceEEec---CCCCcEEEEEecCCCCCCcEEEecCCchhhHHHHHHHHHhcCCCEEEEcccccc---ccccccCCC
Confidence 47888877763 356899999999999999999999999999999999999999999999999876 3688 9999
Q ss_pred CCCCceEEEecEEEEEeEEEeccceeEEEEEEEe-CCceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC------
Q psy12348 87 DRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITR-DSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP------ 159 (178)
Q Consensus 87 ~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~-~~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~------ 159 (178)
.+.+..+.+|+|+|++.++....+++.|.|.|++ .+++|.|+||||++|||+|+|.++..+++|+..|++...
T Consensus 137 ~~~~~~~~~g~f~V~~~~~~~~~~~~~~~l~l~~~~~~~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~ 216 (298)
T PHA02740 137 LKEGCVITSDKFQIETLEIIIKPHFNLTLLSLTDKFGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHK 216 (298)
T ss_pred CCCCCeEEECCEEEEEEEEEecCCEEEEEEEEEcCCCCcEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 9767778899999999999999999999999987 458999999999999999999999999999998886421
Q ss_pred ---CCCcEEEEcCCCCCCcccC
Q psy12348 160 ---TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 160 ---~~~pivVhc~~G~gRsg~F 178 (178)
..+|||||||||+||||+|
T Consensus 217 ~~~~~~PIVVHCSaGvGRTGtF 238 (298)
T PHA02740 217 ADGKIAPIIIDCIDGISSSAVF 238 (298)
T ss_pred ccCCCCCEEEECCCCCchhHHH
Confidence 4589999999999999998
No 3
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=8e-56 Score=343.93 Aligned_cols=171 Identities=24% Similarity=0.426 Sum_probs=155.1
Q ss_pred cCCCCcchhhhccC-CCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccce-eCCeecccccC
Q psy12348 8 WGFSNEAEYIAAQG-PKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFV-EKGRVKCEKYF 85 (178)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~-e~~~~~~~~yw 85 (178)
.+|++.|+.|...+ ..+||||||||+|+..+++||+||+|+++|++|||+||||++|.+||||++.. |.++.+|.+||
T Consensus 61 ~p~D~sRV~L~~~~~~~~dYINAsyV~g~~~~~~yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~YW 140 (312)
T PHA02747 61 PCWDHNRVILDSGGGSTSDYIHANWIDGFEDDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYW 140 (312)
T ss_pred CCCCCCEeEecCCCCCCCCcEEeeeecCCCCCCeEEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCCcccccccC
Confidence 58898888887644 37999999999999988999999999999999999999999999999999998 88999999999
Q ss_pred CCCCCceEEEecEEEEEeEEEeccceeEEEEEEEeC--CceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC----
Q psy12348 86 PDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRD--SEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP---- 159 (178)
Q Consensus 86 P~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~~--~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~---- 159 (178)
|.+++..+.+|+|.|++.++....+++.|.|.|++. +.+|.|+||||++|||+++|.++..+++|+..++..++
T Consensus 141 p~~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~ 220 (312)
T PHA02747 141 CLNEDGNIDMEDFRIETLKTSVRAKYILTLIEITDKILKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGK 220 (312)
T ss_pred CCCCCCCeEeeeEEEEEEEEEecCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhc
Confidence 987677789999999999999889999999999984 58999999999999999999999999999888765432
Q ss_pred -------CCCcEEEEcCCCCCCcccC
Q psy12348 160 -------TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 160 -------~~~pivVhc~~G~gRsg~F 178 (178)
..+|||||||+|+||||+|
T Consensus 221 ~~~~~~~~~~PIvVHCsaGvGRtGtf 246 (312)
T PHA02747 221 LFNPKDALLCPIVVHCSDGVGKTGIF 246 (312)
T ss_pred cccccccCCCCEEEEecCCCcchhHH
Confidence 1379999999999999997
No 4
>PHA02738 hypothetical protein; Provisional
Probab=100.00 E-value=9.1e-56 Score=344.48 Aligned_cols=171 Identities=27% Similarity=0.464 Sum_probs=158.6
Q ss_pred cCCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCCC
Q psy12348 8 WGFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPD 87 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~ 87 (178)
.+|++.|+.|......+||||||||+|+..+++||+||+|+++|++|||+||||++|.+||||++..|.+..+|.+|||.
T Consensus 59 ~~~d~sRV~L~~~~~~~dYINAsyVdg~~~~~kfI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~YWp~ 138 (320)
T PHA02738 59 VCFDHSRVILPAERNRGDYINANYVDGFEYKKKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSD 138 (320)
T ss_pred CCCcCCEEEeCCCCCCCCceEeEEecCCCCCceeEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccccCCC
Confidence 48899888887777789999999999999889999999999999999999999999999999999999999999999998
Q ss_pred CCCceEEEecEEEEEeEEEeccceeEEEEEEEeC-CceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC-------
Q psy12348 88 RVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRD-SEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP------- 159 (178)
Q Consensus 88 ~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~~-~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~------- 159 (178)
..+..+.+|+|+|++.++...++++.|.|.|++. +.+|.|+||||++|||+++|.++..+++|+..|++.+.
T Consensus 139 ~~~~~~~~g~f~V~~~~~~~~~~~~~~~l~l~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~ 218 (320)
T PHA02738 139 VEQGSIRFGKFKITTTQVETHPHYVKSTLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESL 218 (320)
T ss_pred CCCCceEeccEEEEEEEEEecCCeEEEEEEEEeCCCCcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhc
Confidence 8788889999999999999999999999999984 48999999999999999999999999999999986421
Q ss_pred -------CCCcEEEEcCCCCCCcccC
Q psy12348 160 -------TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 160 -------~~~pivVhc~~G~gRsg~F 178 (178)
..+||||||++|+||||+|
T Consensus 219 ~~~~~~~~~~PIVVHCs~GiGRtGtF 244 (320)
T PHA02738 219 QIGHNRLQPPPIVVHCNAGLGRTPCY 244 (320)
T ss_pred ccCccccCCCCeEEEcCCCCChhhhh
Confidence 2479999999999999998
No 5
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=7.2e-55 Score=339.81 Aligned_cols=171 Identities=25% Similarity=0.370 Sum_probs=153.3
Q ss_pred ccCCCCcchhhhcc---------------------CCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCcc
Q psy12348 7 QWGFSNEAEYIAAQ---------------------GPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVV 65 (178)
Q Consensus 7 ~~~~~~~~~~~~~~---------------------~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~ 65 (178)
..+|++.|+.|... .+.+||||||||+|+..+++||+||+|+++|++|||+||||+++.
T Consensus 60 i~p~D~sRV~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~dYINAsyV~g~~~~~~fIaTQ~Pl~~T~~dFW~MIwe~~v~ 139 (323)
T PHA02746 60 IPCWDHSRVVINAHESLKMFDVGDSDGKKIEVTSEDNAENYIHANFVDGFKEANKFICAQGPKEDTSEDFFKLISEHESQ 139 (323)
T ss_pred CCCCcCCEEEecCCCCccccccccccccccccccCCCCCCeEEEecccCCCCCCeEEEeCCCChhhHHHHHHHHHhhCCC
Confidence 35899988887753 345899999999999988999999999999999999999999999
Q ss_pred EEEEcccceeCCeecccccCCCCCCceEEEecEEEEEeEEEeccceeEEEEEEEeC--CceEEEEEEeccCccCCCCCCC
Q psy12348 66 KIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRD--SEVLEVKHFHLHDWQDFSIPGG 143 (178)
Q Consensus 66 ~IV~l~~~~e~~~~~~~~ywP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~~--~~~~~v~~~~~~~W~~~~~p~~ 143 (178)
+||||++.. .+..+|.+|||...+..+.+|+|.|++.+.....+++.+.|.|++. +.+|.|+||||++|||+++|.+
T Consensus 140 vIVMLt~~~-e~~~kc~~YWP~~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~ 218 (323)
T PHA02746 140 VIVSLTDID-DDDEKCFELWTKEEDSELAFGRFVAKILDIIEELSFTKTRLMITDKISDTSREIHHFWFPDWPDNGIPTG 218 (323)
T ss_pred EEEEecccc-cCCccCCCCCCCCCCCCeEEcCEEEEEEEEEEcCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCcCCC
Confidence 999999985 4678899999998787789999999999988888999999999984 4789999999999999999999
Q ss_pred hhHHHHHHHHHHhhCC-----------CCCcEEEEcCCCCCCcccC
Q psy12348 144 PDVLVNFCHLVRNSTP-----------TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 144 ~~~l~~~i~~v~~~~~-----------~~~pivVhc~~G~gRsg~F 178 (178)
+..+++|+..|++.+. ..+||||||++|+||||+|
T Consensus 219 ~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtf 264 (323)
T PHA02746 219 MAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGRAGTF 264 (323)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCCCCEEEEcCCCCCcchhH
Confidence 9999999999986531 2489999999999999997
No 6
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=100.00 E-value=1.6e-51 Score=313.60 Aligned_cols=169 Identities=30% Similarity=0.546 Sum_probs=156.9
Q ss_pred CCCCcchhhhccC-CCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCCC
Q psy12348 9 GFSNEAEYIAAQG-PKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPD 87 (178)
Q Consensus 9 ~~~~~~~~~~~~~-~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~ 87 (178)
++++.|+.|.... ..+||||||||+|+..+++||+||+|+++|++|||+||||+++.+||||++..|.+..+|.+|||.
T Consensus 38 ~~d~~RV~l~~~~~~~~~YInAs~v~~~~~~~~fI~tQ~P~~~t~~dFW~mv~~~~~~~IVmL~~~~e~~~~~~~~Ywp~ 117 (258)
T smart00194 38 PYDHTRVKLTPPPGEGSDYINASYIDGPNGPKAYIATQGPLPSTVEDFWRMVWEEKVTTIVMLTELEEKGREKCAQYWPE 117 (258)
T ss_pred CCCCCEeEccCCCCCCCCceeeeeEecCCCccceEEeCCCchHHHHHHHHHHHhcCCCEEEEeccceeCCEeeccccCCC
Confidence 7888777776544 679999999999998889999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEecEEEEEeEEEeccceeEEEEEEEeCC--ceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC-CCCcE
Q psy12348 88 RVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRDS--EVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP-TSQLS 164 (178)
Q Consensus 88 ~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~~~--~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~-~~~pi 164 (178)
+. +.+.+|.|+|++.++....+++.|+|.|+..+ +++.|+||||.+|||+++|.++..+++|++.++.... ..+||
T Consensus 118 ~~-~~~~~g~~~V~~~~~~~~~~~~~~~l~v~~~~~~~~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pi 196 (258)
T smart00194 118 EE-EPLTYGDITVTLKSVEKVDDYTIRTLEVTNTGCSETRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPI 196 (258)
T ss_pred CC-CcceECCEEEEEEEEEecCCEEEEEEEEEECCCCCcEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCE
Confidence 84 67799999999999999999999999999965 8999999999999999999999999999999998764 37899
Q ss_pred EEEcCCCCCCcccC
Q psy12348 165 VVHCRHLFTQLKEF 178 (178)
Q Consensus 165 vVhc~~G~gRsg~F 178 (178)
+|||++|+||||+|
T Consensus 197 vVHC~~G~gRsg~f 210 (258)
T smart00194 197 VVHCSAGVGRTGTF 210 (258)
T ss_pred EEEeCCCCCccchh
Confidence 99999999999997
No 7
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=100.00 E-value=2.5e-50 Score=302.51 Aligned_cols=170 Identities=31% Similarity=0.561 Sum_probs=157.5
Q ss_pred cCCCCcchhhhccC-CCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCC
Q psy12348 8 WGFSNEAEYIAAQG-PKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFP 86 (178)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP 86 (178)
.++++.|+.|.... ..+||||||||+|+..+++||+||+|+++|+++||+|||++++++||||++..|.+..+|.+|||
T Consensus 9 ~~~d~~rV~l~~~~~~~~~yinA~~v~~~~~~~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~~e~~~~~~~~Ywp 88 (231)
T cd00047 9 LPYDHTRVKLKPDDDEGSDYINASYIDGYNPPKAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTELVEKGREKCAQYWP 88 (231)
T ss_pred CCCCCCEEEccCCCCCCCCcEEeeeEecCCCCcceEEcCCCChhhHHHHHHHHHhcCCCEEEEccccccCCCccCccCCC
Confidence 37888877777664 68999999999999988999999999999999999999999999999999999999999999999
Q ss_pred CCCCceEEEecEEEEEeEEEeccceeEEEEEEEeCC--ceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC--CCC
Q psy12348 87 DRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRDS--EVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP--TSQ 162 (178)
Q Consensus 87 ~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~~~--~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~--~~~ 162 (178)
.+. +.+.+|.|+|++.++...++++.|+|+|+..+ .+|.|+||||.+|+++++|.++..+++|++.+++... ..+
T Consensus 89 ~~~-~~~~~g~~~V~~~~~~~~~~~~~~~l~i~~~~~~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~~~~~~ 167 (231)
T cd00047 89 EEE-GSLTYGDITVTLVSEEKLDDYTVRTLKLSNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSG 167 (231)
T ss_pred CCC-CCeEecCEEEEEEEEEEcCCEEEEEEEEEECCCCCceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhccCCCC
Confidence 986 67799999999999999999999999999855 9999999999999999999999999999999998753 578
Q ss_pred cEEEEcCCCCCCcccC
Q psy12348 163 LSVVHCRHLFTQLKEF 178 (178)
Q Consensus 163 pivVhc~~G~gRsg~F 178 (178)
||+|||++|+||||+|
T Consensus 168 pivVHC~~G~gRsg~~ 183 (231)
T cd00047 168 PIVVHCSAGVGRTGTF 183 (231)
T ss_pred CeEEECCCCCCccchH
Confidence 9999999999999987
No 8
>KOG4228|consensus
Probab=100.00 E-value=1.1e-50 Score=342.43 Aligned_cols=173 Identities=27% Similarity=0.534 Sum_probs=158.8
Q ss_pred eeccccCCCCcchhhhcc--CCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeec
Q psy12348 3 YFNSQWGFSNEAEYIAAQ--GPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVK 80 (178)
Q Consensus 3 ~~n~~~~~~~~~~~~~~~--~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~ 80 (178)
.|+.+.+|++.|+.|..- .+.+|||||||||||+.+++||+||+|+++|+.||||||||+++.+|||++...|.++.+
T Consensus 570 RY~nilayD~sRV~L~~i~Gd~~sDYINAnyIdGy~e~n~yIaaQgP~~eTv~DFWRMVWEq~S~~IVMvTnl~E~~r~k 649 (1087)
T KOG4228|consen 570 RYENILAYDHSRVILPPIEGDPNSDYINANYIDGYKEPNAYIAAQGPRPETVGDFWRMVWEQKSAGIVMVTNLEEFSRVK 649 (1087)
T ss_pred cCCcchhhhcceeeecccCCCccccceeeeeeecccccccceeccCCcccchHHHHHHheeccCCcEEEEeccccccccc
Confidence 355666888877776643 457899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCceEEEecEEEEEeEEEeccceeEEEEEEEeCC--ceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhC
Q psy12348 81 CEKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRDS--EVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNST 158 (178)
Q Consensus 81 ~~~ywP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~~~--~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~ 158 (178)
|.+|||. + ...||++.|++.+.....+|..|++.|...| ..|.|+||||++|||+++|..+..+|.|++.++...
T Consensus 650 C~qYWP~--~-t~~yGdi~V~~~~~~~~a~y~iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~ 726 (1087)
T KOG4228|consen 650 CAQYWPE--G-TETYGDIKVTLVQTKPLAEYGIRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFN 726 (1087)
T ss_pred ccccCCC--C-ccccccccccceeeeeeccceEEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCC
Confidence 9999993 3 4489999999999999999999999999866 799999999999999999999999999999999988
Q ss_pred C-CCCcEEEEcCCCCCCcccC
Q psy12348 159 P-TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 159 ~-~~~pivVhc~~G~gRsg~F 178 (178)
. ..||||||||||+||+|+|
T Consensus 727 p~~aGPiVVHCSAGvGRTG~f 747 (1087)
T KOG4228|consen 727 PPDAGPIVVHCSAGVGRTGCF 747 (1087)
T ss_pred CcCCCCEEEECCCCCCCcceE
Confidence 7 5599999999999999997
No 9
>KOG0790|consensus
Probab=100.00 E-value=1e-50 Score=314.74 Aligned_cols=174 Identities=27% Similarity=0.468 Sum_probs=156.9
Q ss_pred eccccCCCCcchhhhcc---CCCCcccccceee--------cccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEccc
Q psy12348 4 FNSQWGFSNEAEYIAAQ---GPKADTVADFWTM--------GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCS 72 (178)
Q Consensus 4 ~n~~~~~~~~~~~~~~~---~~~~dyinAs~i~--------g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~ 72 (178)
|-++.||++.|+.|.+- -|++||||||||- ....++.||++|+.+.+|+.|||+||||+|.++|||.+.
T Consensus 278 YkNIlPfDHtRViL~d~~~n~pgsdYINAnyi~~~~q~~~~~~~~kKsyIAtQGCL~nTVnDFW~MvwQENsrVIVMtTk 357 (600)
T KOG0790|consen 278 YKNILPFDHTRVILQDRDPNIPGSDYINANYIMIEFQRLCNNSKPKKSYIATQGCLQNTVNDFWRMVWQENSRVIVMTTK 357 (600)
T ss_pred ccccCcccceeeEeecCCCCCccchhcccchhhhhhhhccCccccccceeehhhHHHHHHHHHHHHHHhccceEEEEehh
Confidence 34456999987777653 4689999999882 112346899999999999999999999999999999999
Q ss_pred ceeCCeecccccCCCCCCceEEEecEEEEEeEEEeccceeEEEEEEEe---CCceEEEEEEeccCccCCCCCCChhHHHH
Q psy12348 73 FVEKGRVKCEKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITR---DSEVLEVKHFHLHDWQDFSIPGGPDVLVN 149 (178)
Q Consensus 73 ~~e~~~~~~~~ywP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~---~~~~~~v~~~~~~~W~~~~~p~~~~~l~~ 149 (178)
..|.|+.||.+|||+. +....||.+.|+|.++....+|++|+|.++. ++..|+|+|+||..|||+|+|.+|..+|+
T Consensus 358 E~ERgK~KC~~YWPee-~~~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLn 436 (600)
T KOG0790|consen 358 EVERGKSKCVKYWPEE-GALEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLN 436 (600)
T ss_pred hhhcccccccccCCcc-cchhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHH
Confidence 9999999999999977 8787999999999999999999999999994 44899999999999999999999999999
Q ss_pred HHHHHHhhCC---CCCcEEEEcCCCCCCcccC
Q psy12348 150 FCHLVRNSTP---TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 150 ~i~~v~~~~~---~~~pivVhc~~G~gRsg~F 178 (178)
|++.|+..+. ..||||||||||+||+|+|
T Consensus 437 FLe~V~~rq~~l~~AgpIvVHCSAGIGrTGTf 468 (600)
T KOG0790|consen 437 FLEEVNHRQESLMDAGPIVVHCSAGIGRTGTF 468 (600)
T ss_pred HHHHhhhhhccccccCcEEEEccCCcCCcceE
Confidence 9999999877 7789999999999999997
No 10
>KOG0792|consensus
Probab=100.00 E-value=9.7e-49 Score=328.16 Aligned_cols=170 Identities=25% Similarity=0.420 Sum_probs=156.6
Q ss_pred cCCCCcchhhhccC-CCCcccccceeeccc--CCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeeccccc
Q psy12348 8 WGFSNEAEYIAAQG-PKADTVADFWTMGFS--NEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKY 84 (178)
Q Consensus 8 ~~~~~~~~~~~~~~-~~~dyinAs~i~g~~--~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~y 84 (178)
-||++.|+.|...+ ....|||||+|+-.- ....||+||+|++.|+.|||+||||+++.+||||+...|.|+.||.+|
T Consensus 904 lPYD~tRV~L~~~~~~nagYINAS~i~ipvgg~e~~YIA~QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~KchqY 983 (1144)
T KOG0792|consen 904 LPYDDTRVELQPSKDNNAGYINASHIEIPVGGIENRYIACQGPLPHTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQY 983 (1144)
T ss_pred CCCcCceeeeccCCCCCcccccceeeEeeecceeEEEEEecCCCcchHHHHHHHHHhcCceEEEEEeehhhcCeeccccc
Confidence 49999988887654 477999999998552 367999999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEecEEEEEeEEEeccceeEEEEEEEe--CCceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCCC-C
Q psy12348 85 FPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITR--DSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPT-S 161 (178)
Q Consensus 85 wP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~--~~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~~-~ 161 (178)
||....+.+.||.|.|+|........|..|.++|++ .++.|+|+|+||+.|||+++|+++..||+|+++|+..+.. .
T Consensus 984 WPr~~~~t~~ygrf~v~~~~~~~t~~y~tr~m~l~~~~t~eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~ 1063 (1144)
T KOG0792|consen 984 WPRLGHETMEYGRFQVTCVFEQQTTCYVTREMTLKDLQTREERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTN 1063 (1144)
T ss_pred cCCCCccceeccceEEEEEEecccccEEEEeEEEeeccCCceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhccCC
Confidence 998745678999999999999999999999999999 4599999999999999999999999999999999999874 5
Q ss_pred CcEEEEcCCCCCCccc
Q psy12348 162 QLSVVHCRHLFTQLKE 177 (178)
Q Consensus 162 ~pivVhc~~G~gRsg~ 177 (178)
.|||||||||+||||+
T Consensus 1064 pPilvHCSAGiGRTGV 1079 (1144)
T KOG0792|consen 1064 PPILVHCSAGIGRTGV 1079 (1144)
T ss_pred CCeEEEccCCCCccee
Confidence 6999999999999997
No 11
>KOG0791|consensus
Probab=100.00 E-value=1.2e-47 Score=292.42 Aligned_cols=174 Identities=30% Similarity=0.578 Sum_probs=161.5
Q ss_pred eccccCCCCcchhhh--ccCCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecc
Q psy12348 4 FNSQWGFSNEAEYIA--AQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKC 81 (178)
Q Consensus 4 ~n~~~~~~~~~~~~~--~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~ 81 (178)
+++.-+|+++++.+. ...+.+|||||||++|+...+.|||+|+|+++|.++||+||||+++..||||+...|+++.+|
T Consensus 128 ~~nilpYd~Srvkl~~~~e~~~~DYinA~~~Pg~~s~~~fIAtQGPlp~t~~~fW~mvwq~~~~~IVmlt~~~e~~R~kc 207 (374)
T KOG0791|consen 128 YTNILPYDNSRVKLSPVNEEEGSDYINASYIPGYNSPREFIATQGPLPETRDDFWKMVWQQKSHIIVMLTKCNEKGRVKC 207 (374)
T ss_pred cCCCCCcccccceeccccccchhhhhhhhhcCCCCCcceEEEeeCCCCCChhHHHHHHHHhhcceEEEEeecccccchhh
Confidence 455568888877776 467899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCceEEEecEEEEEeEEEeccceeEEEEEEEeCCceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC-C
Q psy12348 82 EKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP-T 160 (178)
Q Consensus 82 ~~ywP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~~~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~-~ 160 (178)
..|||.... ++.+|+++|+..++....++..|.+.|...+++|.++||||..|||+++|..++.++.|++.++..-. .
T Consensus 208 ~~ywP~~~~-~~~~gdi~V~~v~e~~~~~w~ir~~~l~~~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~ 286 (374)
T KOG0791|consen 208 DEYWPDEEV-PVAYGDITVTMVSEESLDEWTIREFRLNYAGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTS 286 (374)
T ss_pred hhhcccccc-cceeccEEEEEechhhcCCceEEEEeeecccccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccC
Confidence 999999844 47999999999999999999999999997789999999999999999999999999999999998875 5
Q ss_pred CCcEEEEcCCCCCCcccC
Q psy12348 161 SQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 161 ~~pivVhc~~G~gRsg~F 178 (178)
.+|++||||+||||+|+|
T Consensus 287 ~~p~iVhCSAGVgRTGTF 304 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTF 304 (374)
T ss_pred CCceeEEeecccccccch
Confidence 689999999999999998
No 12
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=100.00 E-value=5.5e-47 Score=284.38 Aligned_cols=171 Identities=30% Similarity=0.587 Sum_probs=153.7
Q ss_pred cCCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCCC
Q psy12348 8 WGFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPD 87 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~ 87 (178)
.++++.|+.+...+...||||||||++++..++||++|+|+++|+++||+|||+++|.+||||++..|.+...|.+|||.
T Consensus 11 ~~~d~~rv~l~~~~~~~~yi~A~~v~~~~~~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~~~~e~~~~~~~~y~P~ 90 (235)
T PF00102_consen 11 LPYDDSRVKLNPSPGDSDYINASYVDGYKNGKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLCSFDESGDEKCDQYWPL 90 (235)
T ss_dssp -BBTTTEEETTTTTTSTTEESEEEEEESSSTEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEESBSEETTEESS--TSTS
T ss_pred CcCcceEEEecCCCCccchhhhhhhccccchhhheeecccccccccceehheeeccccceeccccccccccccccccccc
Confidence 48888887885555667899999999998889999999999999999999999999999999999999999999999997
Q ss_pred CCCceEEEecEEEEEe-EEE-eccceeEEEEEEEeCC-c--eEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC-CC
Q psy12348 88 RVNEYFVFNNIRVGCT-EQE-VGSHHTCTHLRITRDS-E--VLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP-TS 161 (178)
Q Consensus 88 ~~~~~~~~g~~~V~~~-~~~-~~~~~~~r~l~l~~~~-~--~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~-~~ 161 (178)
+.++.+.+|.++|++. +.. ...+++.|+|.|+..+ . ++.+.||||..|++.++|.++..+++|++.+++... ..
T Consensus 91 ~~~~~~~~g~~~V~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~~~~~~~~~v~~~~~~~~ 170 (235)
T PF00102_consen 91 KEGESLKFGDYTVKCKEKIEENSKHYTVRKLEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPESFLDFIRKVNKSKDDPN 170 (235)
T ss_dssp SSSSEEEETTEEEEEEEEEEEEESSEEEEEEEEEETTTTEEEEEEEEEEEESSSSSSSGSSSHHHHHHHHHHHHHHSTTS
T ss_pred ccccccccccccccccccccccccceEEeeccccccccccccccccceeeeeccccccccccchhhhhhhhccccccCCc
Confidence 7789999999999999 666 7789999999999965 2 689999999999999999999999999999999774 77
Q ss_pred CcEEEEcCCCCCCcccC
Q psy12348 162 QLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 162 ~pivVhc~~G~gRsg~F 178 (178)
+|++|||++|+||||+|
T Consensus 171 ~pivVhc~~G~gRsg~f 187 (235)
T PF00102_consen 171 GPIVVHCSDGVGRSGTF 187 (235)
T ss_dssp SEEEEESSSSSHHHHHH
T ss_pred cceEeeccccccccccc
Confidence 99999999999999987
No 13
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=4.3e-46 Score=272.76 Aligned_cols=169 Identities=24% Similarity=0.418 Sum_probs=146.6
Q ss_pred ccCCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCc--cEEEEcccceeCCeeccccc
Q psy12348 7 QWGFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQV--VKIVMLCSFVEKGRVKCEKY 84 (178)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v--~~IV~l~~~~e~~~~~~~~y 84 (178)
+.||++.|+.++.....+||||||||+... .+|||||+|+++|+.+||+|||++.. .+||||++..|.++++|.+|
T Consensus 62 IvPYe~tRV~Lk~~k~~~DYINAS~ik~~~--~~yIAtQgP~~~t~ddFW~mvw~n~~~~gvIVmLt~l~E~~rekc~qY 139 (302)
T COG5599 62 IVPYEHTRVHLKYGKSINDYINASYIKTPR--GKYIATQGPKPETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQY 139 (302)
T ss_pred cccccCceeeccCCCchhhcccceeeecCC--CceEEecCCCCchHHHHHHHHHhcCCCceEEEEecChHHHhHHHHhhh
Confidence 359999999998887899999999999766 36999999999999999999999988 99999999999999999999
Q ss_pred CCCCCCceEEEecEEEEEeEEEe--ccceeEEEEEEEe-CCceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCCCC
Q psy12348 85 FPDRVNEYFVFNNIRVGCTEQEV--GSHHTCTHLRITR-DSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTS 161 (178)
Q Consensus 85 wP~~~~~~~~~g~~~V~~~~~~~--~~~~~~r~l~l~~-~~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~~~ 161 (178)
||...++.+.+|...+.-++.+. ..-+..+.++|+. ++..+.|.||+|.+|+|...| +..++.++++.+...--..
T Consensus 140 Wp~~~~~~~~~G~~v~~~~~~e~~~d~~~~~~~f~L~~~~~~~k~Ihhf~y~nW~D~~~p-~i~sl~~~~~sl~~sp~~t 218 (302)
T COG5599 140 WPLGYDDTLIIGLRVIKQKKYELFNDNIVNVHNFELTSINGPPKKIHHFQYINWVDFNVP-DIRSLTEVIHSLNDSPVRT 218 (302)
T ss_pred CCCCcCcceeeeeEEEEEecccccccceeeeeecccccCCCCccEEEEEEecCccccCCc-CHHHHHHHHHHhhcCcCCC
Confidence 99877888888976666665553 3456688999986 569999999999999999999 7777777777776541157
Q ss_pred CcEEEEcCCCCCCcccC
Q psy12348 162 QLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 162 ~pivVhc~~G~gRsg~F 178 (178)
+|++||||||+||+|+|
T Consensus 219 ~piiVHCSAGvGRTGTF 235 (302)
T COG5599 219 GPIIVHCSAGVGRTGTF 235 (302)
T ss_pred CCEEEEeccCCCCccee
Confidence 99999999999999998
No 14
>KOG0793|consensus
Probab=100.00 E-value=2.7e-46 Score=302.47 Aligned_cols=172 Identities=26% Similarity=0.461 Sum_probs=157.0
Q ss_pred ccc---cCCCCcchhhhcc--CCCCcccccceeeccc-CCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCe
Q psy12348 5 NSQ---WGFSNEAEYIAAQ--GPKADTVADFWTMGFS-NEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGR 78 (178)
Q Consensus 5 n~~---~~~~~~~~~~~~~--~~~~dyinAs~i~g~~-~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~ 78 (178)
|+. .+|++.++.|+.. ...+||||||+|--.. ....||+||+|++.|++|||+||||+.|.+||||+.+.|.+.
T Consensus 763 NR~~a~LpyDhsrV~l~~~~s~s~~dYiNAS~I~DhDPR~paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv 842 (1004)
T KOG0793|consen 763 NRSLAVLPYDHSRVLLKAENSHSHSDYINASPIMDHDPRNPAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGV 842 (1004)
T ss_pred cCCCCccccccceeeeccccCccccccccccccccCCCCccceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcch
Confidence 554 4999998888864 5589999999996444 356899999999999999999999999999999999999999
Q ss_pred ecccccCCCCCCceEEEecEEEEEeEEEec-cceeEEEEEEEe--CCceEEEEEEeccCccCCCCCCChhHHHHHHHHHH
Q psy12348 79 VKCEKYFPDRVNEYFVFNNIRVGCTEQEVG-SHHTCTHLRITR--DSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVR 155 (178)
Q Consensus 79 ~~~~~ywP~~~~~~~~~g~~~V~~~~~~~~-~~~~~r~l~l~~--~~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~ 155 (178)
..|.+|||++ |.. .|+-|.|.+.++.+- ++|.+|.|.|++ ..+.|+|++|||.+||+.|+|.+..+|++|-++|+
T Consensus 843 ~qc~rYWPde-Gse-lyhiyEV~LVSEHIWceDfLVRSFYLKNlqtseTRTvTQFHfLSWp~egvPasarslLdFRRKVN 920 (1004)
T KOG0793|consen 843 RQCYRYWPDE-GSE-LYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTSETRTVTQFHFLSWPDEGVPASARSLLDFRRKVN 920 (1004)
T ss_pred hhhhhcCCCC-Ccc-eeeeEEeeeehhhhhhhhHHHHHHHHhhcccccceeeeeeeeecccccCCccchHHHHHHHHHhh
Confidence 9999999998 776 799999999999976 889999999998 44999999999999999999999999999999999
Q ss_pred hhCC-CCCcEEEEcCCCCCCcccC
Q psy12348 156 NSTP-TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 156 ~~~~-~~~pivVhc~~G~gRsg~F 178 (178)
+... .+.|||||||||.||+|+|
T Consensus 921 K~YRGRScpIiVH~sdGaGRTG~Y 944 (1004)
T KOG0793|consen 921 KCYRGRSCPIIVHCSDGAGRTGTY 944 (1004)
T ss_pred hhccCCCCceEEEccCCCCcccee
Confidence 9987 7899999999999999986
No 15
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=100.00 E-value=1.3e-43 Score=281.97 Aligned_cols=162 Identities=15% Similarity=0.222 Sum_probs=135.6
Q ss_pred cCCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCC--CcHHHHhhHhhhCCccEEEEcccceeCCeecccccC
Q psy12348 8 WGFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKA--DTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYF 85 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~--~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~yw 85 (178)
+++++.|+.+.. ++|||||||+ +..++.+|++|.|+. +|++|||+||||++|.+||||+...|.+..+|.+||
T Consensus 308 ~~~~~TrV~ls~----g~yI~ANyI~-~~~k~~aIa~QYP~nt~eTieDFWrMVWEn~~~VIVMLT~l~E~g~~KC~pYW 382 (535)
T PRK15375 308 PINQQTQVKLSD----GMPVPVNTLT-FDGKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYF 382 (535)
T ss_pred CccccceEEcCC----CCccccceee-ecCccceEeccCCCCchhhHHHHHHHHHHcCCCEEEEeeccccCcccccCccC
Confidence 577887666533 9999999999 777788999999965 899999999999999999999999999999999999
Q ss_pred CCCCCceEEEecEEEEEeEEEec-cceeEEEEE--EEeCCceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC---
Q psy12348 86 PDRVNEYFVFNNIRVGCTEQEVG-SHHTCTHLR--ITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP--- 159 (178)
Q Consensus 86 P~~~~~~~~~g~~~V~~~~~~~~-~~~~~r~l~--l~~~~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~--- 159 (178)
+. ...||+|+|++.+++.. .++..|.+. ++..+..+.|+||||++|||+++|++...++.|++.|+...+
T Consensus 383 ~~----s~tYGdItVts~seesls~g~iIR~f~L~Ik~~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~ 458 (535)
T PRK15375 383 RG----SYTFGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGA 458 (535)
T ss_pred CC----cceeccEEEEEEEEEeccCCceEEEEEEEEecCCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhccc
Confidence 62 34799999999988764 456666664 444435568999999999999999888889999999987642
Q ss_pred ------CCCcEEEEcCCCCCCcccC
Q psy12348 160 ------TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 160 ------~~~pivVhc~~G~gRsg~F 178 (178)
..+++|||||||+||||+|
T Consensus 459 ~~~~~~nk~~PVVHCSAGVGRTGTF 483 (535)
T PRK15375 459 PGRSSSDKHLPMIHCLGGVGRTGTM 483 (535)
T ss_pred ccccccCCCCceEEcCCCCchHHHH
Confidence 1234589999999999997
No 16
>KOG4228|consensus
Probab=100.00 E-value=3.2e-40 Score=279.36 Aligned_cols=166 Identities=21% Similarity=0.466 Sum_probs=148.6
Q ss_pred CCCCcchhhhc-cCCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCCC
Q psy12348 9 GFSNEAEYIAA-QGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPD 87 (178)
Q Consensus 9 ~~~~~~~~~~~-~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~ 87 (178)
||++.+..|.. .|.++||||||+||||..+..||++|+|+++|++|||||||+++|.+||||++..+. .+|.+|||.
T Consensus 864 P~d~~rv~L~~~~G~~sdYINAs~idgy~~~~~fivtq~PL~~T~~DFWrmi~d~~~tsiVmL~~l~~~--~~C~qyw~~ 941 (1087)
T KOG4228|consen 864 PYDRNRVILIPTHGESSDYINASFIDGYRQPKAFIVTQGPLAETVEDFWRMIWDQNVTSIVMLTELKHP--EKCPQYWPP 941 (1087)
T ss_pred CchhcccceeccCCCcccccchhhhcccCCcceEEEecCCcccchHHHHHHhhccceeEEEEecccCcc--cccccccCC
Confidence 88888877774 577999999999999999999999999999999999999999999999999998765 899999999
Q ss_pred CCCceEEEecEEEEEeEEEeccceeEEEEEEEe--CCceEEEEEEeccCccCCCCC-CChhHHHHHHHHHHhhCC--CCC
Q psy12348 88 RVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITR--DSEVLEVKHFHLHDWQDFSIP-GGPDVLVNFCHLVRNSTP--TSQ 162 (178)
Q Consensus 88 ~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l~~--~~~~~~v~~~~~~~W~~~~~p-~~~~~l~~~i~~v~~~~~--~~~ 162 (178)
+ |.. .||.+.|+.+.......++.|.+.|++ .+.+|+|.+|||++||..+.| .+...+..+.+.++++++ ..+
T Consensus 942 ~-g~~-~yg~i~Ve~~~~~~~~~~t~r~f~i~n~~~~~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~ 1019 (1087)
T KOG4228|consen 942 E-GSQ-RYGPIEVEDMNEHINPQYTAREFGVTNEREKQSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADG 1019 (1087)
T ss_pred c-Cce-ecCcEEEEecccccchhhhhhhheeeeccccCceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCC
Confidence 6 655 899999999999999999999999999 458999999999999976665 466677777777777666 589
Q ss_pred cEEEEcCCCCCCcccC
Q psy12348 163 LSVVHCRHLFTQLKEF 178 (178)
Q Consensus 163 pivVhc~~G~gRsg~F 178 (178)
|++|||++|+||+|+|
T Consensus 1020 P~~Vhc~nG~~rsg~f 1035 (1087)
T KOG4228|consen 1020 PIIVHCLNGVGRTGTF 1035 (1087)
T ss_pred CEEEEEcCCCcceeeh
Confidence 9999999999999998
No 17
>KOG0789|consensus
Probab=100.00 E-value=1.6e-38 Score=256.77 Aligned_cols=170 Identities=21% Similarity=0.334 Sum_probs=133.0
Q ss_pred cCCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCCC
Q psy12348 8 WGFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPD 87 (178)
Q Consensus 8 ~~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~ 87 (178)
.++++.++.++... ..||||||||+++...+.||+||+|++.|.+|||+|||++++..|||||+..|.++.+|.+|||.
T Consensus 137 ~~~d~~rV~l~~~~-~~dyI~A~~v~~~~~~~~~I~tQ~Pl~~t~~dFW~mv~~~k~~~Ivml~~~~E~~~~kc~~Y~P~ 215 (415)
T KOG0789|consen 137 QCLDHTRVKLKPPQ-DKDYIHASKIYFPKGPRTAILTQAPLSKTTEDFWRMVFEEKVESVVLLCSDEELGAAECASYFPS 215 (415)
T ss_pred CcccCCeeecCCCC-CcccchhhccCCcCCCcCceecCCCCcccHHHHHHHHHHcCCCEEEEecchhhccHHHHhhcCcc
Confidence 58888766665555 99999999999976338999999999999899999999999999999999999999999999999
Q ss_pred CCCceEEEecEEEEEeEEE---ec---cceeEEEEEEEe-CC--ceEEEEEEeccCccCCCCCCChhHHHHHHHH-HHhh
Q psy12348 88 RVNEYFVFNNIRVGCTEQE---VG---SHHTCTHLRITR-DS--EVLEVKHFHLHDWQDFSIPGGPDVLVNFCHL-VRNS 157 (178)
Q Consensus 88 ~~~~~~~~g~~~V~~~~~~---~~---~~~~~r~l~l~~-~~--~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~-v~~~ 157 (178)
..|+.+.++.+..++.... .. .......+.+.. .+ .++.|.|+||.+|||+++|.+...++.++.. +...
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~ 295 (415)
T KOG0789|consen 216 KRGVKLTFLEFGKKFVENRKVEMKQQDQTSTVGLLLLVLPEGLEISSSVVHYHYINWPDHGAPDSVKSILPLLRQSVLEL 295 (415)
T ss_pred cCCCeeeecccceeEEEeeeeecccccccceeeEEEeecCCCccccceEEEEeeCCCccccCCcchHHHHHHHHhhhhhh
Confidence 8655667776644444333 32 222333323322 33 3479999999999999999999999999875 1122
Q ss_pred CCCCCcEEEEcCCCCCCcccC
Q psy12348 158 TPTSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 158 ~~~~~pivVhc~~G~gRsg~F 178 (178)
+...+|++|||++|+||+|+|
T Consensus 296 ~~~~~P~vVhcsaG~gRtgt~ 316 (415)
T KOG0789|consen 296 RPKQEPIEVHCSAGAGRAGTL 316 (415)
T ss_pred cCCCCCeEEECCCCCCccchH
Confidence 214689999999999999997
No 18
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.56 E-value=3.8e-15 Score=97.98 Aligned_cols=53 Identities=32% Similarity=0.650 Sum_probs=48.0
Q ss_pred EEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC---CCCcEEEEcCCCCCCcccC
Q psy12348 126 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP---TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 126 ~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~---~~~pivVhc~~G~gRsg~F 178 (178)
.+.||||.+||+.++|.....+++++..+++..+ ..+||+|||.+|+||||+|
T Consensus 1 ~~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00404 1 TVKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CeEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHH
Confidence 3789999999999999988999999999998764 3689999999999999986
No 19
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.56 E-value=3.8e-15 Score=97.98 Aligned_cols=53 Identities=32% Similarity=0.650 Sum_probs=48.0
Q ss_pred EEEEEeccCccCCCCCCChhHHHHHHHHHHhhCC---CCCcEEEEcCCCCCCcccC
Q psy12348 126 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP---TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 126 ~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~---~~~pivVhc~~G~gRsg~F 178 (178)
.+.||||.+||+.++|.....+++++..+++..+ ..+||+|||.+|+||||+|
T Consensus 1 ~~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~ 56 (105)
T smart00012 1 TVKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTF 56 (105)
T ss_pred CeEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHH
Confidence 3789999999999999988999999999998764 3689999999999999986
No 20
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.28 E-value=2.7e-12 Score=91.50 Aligned_cols=94 Identities=16% Similarity=0.303 Sum_probs=66.0
Q ss_pred cceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCCCCCCceEEEecEEEEEeEEEeccceeEEEEEE
Q psy12348 39 AEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRI 118 (178)
Q Consensus 39 ~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~l 118 (178)
.+||++.+|++++..+|...+-+.++..||.++.. .++.+
T Consensus 16 ~r~~~~~~P~~~~~~~~l~~L~~~gI~~Iv~l~~~----------~~~~~------------------------------ 55 (166)
T PTZ00242 16 FKFLILDAPSPSNLPLYIKELQRYNVTHLVRVCGP----------TYDAE------------------------------ 55 (166)
T ss_pred eEEEEecCCCcccHHHHHHHHHhCCCeEEEecCCC----------CCCHH------------------------------
Confidence 48999999999999999999999999999988642 12111
Q ss_pred EeCCceEEEEEEeccCcc--CCCCCCCh---hHHHHHHHHHHhhC-CCCCcEEEEcCCCCCCcccC
Q psy12348 119 TRDSEVLEVKHFHLHDWQ--DFSIPGGP---DVLVNFCHLVRNST-PTSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 119 ~~~~~~~~v~~~~~~~W~--~~~~p~~~---~~l~~~i~~v~~~~-~~~~pivVhc~~G~gRsg~F 178 (178)
.....++++..|| |..+| +. ..+++++....... ...+||+|||.+|+||||+|
T Consensus 56 -----~~~~~gi~~~~~p~~D~~~P-~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~ 115 (166)
T PTZ00242 56 -----LLEKNGIEVHDWPFDDGAPP-PKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPIL 115 (166)
T ss_pred -----HHHHCCCEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHH
Confidence 0112233444555 55555 44 45556656554431 15899999999999999985
No 21
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.05 E-value=5.5e-10 Score=82.87 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=74.5
Q ss_pred CCCCcccccceee---cccCCcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCCCCCCceEEEec
Q psy12348 21 GPKADTVADFWTM---GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNN 97 (178)
Q Consensus 21 ~~~~dyinAs~i~---g~~~~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~~~~~~~~~g~ 97 (178)
.-..||+|.-|-- --...-+||+.-+|+..++.+|..-+.+.++..||.++.. .| +.. ..
T Consensus 71 ~~~~~~~~~~~~~~~~ie~~~~rfLi~~~P~~~~~~~yl~eLk~~gV~~lVrlcE~---------~Y-d~~--~~----- 133 (241)
T PTZ00393 71 NYNMDYLNPVLNHPTKIEHGKIKILILDAPTNDLLPLYIKEMKNYNVTDLVRTCER---------TY-NDG--EI----- 133 (241)
T ss_pred cccccccchhcccchhhccCceeEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCCC---------CC-CHH--HH-----
Confidence 4455666655421 1113459999999999999999999999999999998652 12 211 00
Q ss_pred EEEEEeEEEeccceeEEEEEEEeCCceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 98 IRVGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 98 ~~V~~~~~~~~~~~~~r~l~l~~~~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
....+.+++ ..|+|..+|+ .+.+.+++..+.......++|+|||.+|+||||+
T Consensus 134 -------------------------~~~GI~~~~-lpipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGt 186 (241)
T PTZ00393 134 -------------------------TSAGINVHE-LIFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPV 186 (241)
T ss_pred -------------------------HHcCCeEEE-eecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHH
Confidence 112233333 2578988884 4444444444443333678999999999999997
No 22
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=98.63 E-value=2.8e-08 Score=68.52 Aligned_cols=51 Identities=18% Similarity=0.162 Sum_probs=37.4
Q ss_pred EEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCcccC
Q psy12348 125 LEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 125 ~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~F 178 (178)
....|+.+.+|++...+.....+++++..... ..+||+|||.+|.||||+|
T Consensus 48 ~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rs~~~ 98 (139)
T cd00127 48 FNYLYVPILDLPSQDISKYFDEAVDFIDDARE---KGGKVLVHCLAGVSRSATL 98 (139)
T ss_pred ceEEEEEceeCCCCChHHHHHHHHHHHHHHHh---cCCcEEEECCCCCchhHHH
Confidence 45677788888755444444556666666655 5689999999999999974
No 23
>KOG2836|consensus
Probab=98.52 E-value=5.8e-07 Score=60.63 Aligned_cols=94 Identities=18% Similarity=0.309 Sum_probs=68.6
Q ss_pred CcceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCeecccccCCCCCCceEEEecEEEEEeEEEeccceeEEEEE
Q psy12348 38 EAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLR 117 (178)
Q Consensus 38 ~~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~~~~~~~~~g~~~V~~~~~~~~~~~~~r~l~ 117 (178)
.-+|++|..|...|+..|-.-+-.+++.++|..|+.. |=-. .++
T Consensus 16 ~MrFLIThnPtnaTln~fieELkKygvttvVRVCe~T---------Ydt~----~le----------------------- 59 (173)
T KOG2836|consen 16 NMRFLITHNPTNATLNKFIEELKKYGVTTVVRVCEPT---------YDTT----PLE----------------------- 59 (173)
T ss_pred ceEEEEecCCCchhHHHHHHHHHhcCCeEEEEecccc---------cCCc----hhh-----------------------
Confidence 3589999999999999999999999999999998752 2111 100
Q ss_pred EEeCCceEEEEEEeccCcc-CCCCCCChhHHHHHHHHHHhhCC--CCCcEEEEcCCCCCCcc
Q psy12348 118 ITRDSEVLEVKHFHLHDWQ-DFSIPGGPDVLVNFCHLVRNSTP--TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 118 l~~~~~~~~v~~~~~~~W~-~~~~p~~~~~l~~~i~~v~~~~~--~~~pivVhc~~G~gRsg 176 (178)
-.-++..+|+ +.|.|+..+.+-+.++.+....+ +...|-|||-+|+||+-
T Consensus 60 ---------k~GI~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrap 112 (173)
T KOG2836|consen 60 ---------KEGITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAP 112 (173)
T ss_pred ---------hcCceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcch
Confidence 0112334788 77888776666666665555443 77789999999999974
No 24
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=98.12 E-value=3.2e-06 Score=61.16 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=29.3
Q ss_pred CccCCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 134 DWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 134 ~W~~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
.++|+.+|+ ...+.+++..++......+.|+|||..|+||||+
T Consensus 79 ~~~D~~~p~-~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgt 121 (180)
T COG2453 79 PILDGTVPD-LEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGT 121 (180)
T ss_pred eecCCCCCc-HHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHH
Confidence 466887773 3444444444444443556999999999999997
No 25
>KOG1720|consensus
Probab=98.04 E-value=8.5e-06 Score=59.18 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=37.9
Q ss_pred EEEEeccCccCCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 127 VKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 127 v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
+.|.++ -.+|...| ++..+.+|++.+..... .+-|.|||-+|.||||+
T Consensus 116 i~h~~l-~f~Dg~tP-~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~ 163 (225)
T KOG1720|consen 116 IDHHDL-FFADGSTP-TDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGT 163 (225)
T ss_pred ceeeee-ecCCCCCC-CHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhH
Confidence 344443 24677666 78889999999988774 79999999999999997
No 26
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=98.04 E-value=5.7e-06 Score=57.00 Aligned_cols=31 Identities=16% Similarity=0.238 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHhhCCCCCcEEEEcCCCCCCcccC
Q psy12348 145 DVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 145 ~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~F 178 (178)
..+.+++..... ..+||+|||.+|.||||++
T Consensus 65 ~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v 95 (138)
T smart00195 65 PEAVEFIEDAEK---KGGKVLVHCQAGVSRSATL 95 (138)
T ss_pred HHHHHHHHHHhc---CCCeEEEECCCCCchHHHH
Confidence 344555555443 6789999999999999974
No 27
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=97.99 E-value=4.7e-06 Score=58.75 Aligned_cols=119 Identities=15% Similarity=0.077 Sum_probs=58.7
Q ss_pred CCcccccceeecc--cCCcceEEecCCCCC------cHHHHhhHhhhCCccEEEEcccceeCCeecccccCCCCCCceEE
Q psy12348 23 KADTVADFWTMGF--SNEAEYIAAQGPKAD------TVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFV 94 (178)
Q Consensus 23 ~~dyinAs~i~g~--~~~~~~I~~Q~P~~~------t~~~FW~mv~~~~v~~IV~l~~~~e~~~~~~~~ywP~~~~~~~~ 94 (178)
.++=|+.+|++-- +......++-+|-.. ..+.=-+-+.+..+..||.|++..|....+ .|.- ++..
T Consensus 23 ~~~P~~i~~l~~s~~~~~~~Lglt~~PG~k~~d~~RdL~~DL~~Lk~~G~~~Vvtl~~~~EL~~l~----Vp~L-~~~~- 96 (168)
T PF05706_consen 23 EQTPIQIDWLPLSPVNCSGFLGLTFLPGCKFKDWRRDLQADLERLKDWGAQDVVTLLTDHELARLG----VPDL-GEAA- 96 (168)
T ss_dssp BTS----EEEE-GGGT-SSEEEEES-TT-EETTEEB-HHHHHHHHHHTT--EEEE-S-HHHHHHTT-----TTH-HHHH-
T ss_pred cCCceeeeeecccccCCcceeeeecCCCcccccccchHHHHHHHHHHCCCCEEEEeCcHHHHHHcC----CccH-HHHH-
Confidence 3567888998732 233466677777521 122223456678999999999887764432 2321 1110
Q ss_pred EecEEEEEeEEEeccceeEEEEEEEeCCceEEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCC
Q psy12348 95 FNNIRVGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQ 174 (178)
Q Consensus 95 ~g~~~V~~~~~~~~~~~~~r~l~l~~~~~~~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gR 174 (178)
+.+-+..+|+ -.+|.++| +.+.+.+++.++...-+....++|||..|+||
T Consensus 97 ----------------------------~~~Gi~~~h~-PI~D~~aP-d~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGR 146 (168)
T PF05706_consen 97 ----------------------------QARGIAWHHL-PIPDGSAP-DFAAAWQILEELAARLENGRKVLVHCRGGLGR 146 (168)
T ss_dssp ----------------------------HHTT-EEEE-----TTS----HHHHHHHHHHHHHHHHTT--EEEE-SSSSSH
T ss_pred ----------------------------HHcCCEEEec-CccCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEECCCCCCH
Confidence 2233444455 47899999 46666677776665554678999999999999
Q ss_pred ccc
Q psy12348 175 LKE 177 (178)
Q Consensus 175 sg~ 177 (178)
||+
T Consensus 147 tGl 149 (168)
T PF05706_consen 147 TGL 149 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 996
No 28
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=97.77 E-value=2.2e-05 Score=53.62 Aligned_cols=33 Identities=18% Similarity=0.223 Sum_probs=25.8
Q ss_pred CChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 142 GGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 142 ~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
.....+.+++..... ..++|+|||.+|+||||+
T Consensus 57 ~~~~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~ 89 (133)
T PF00782_consen 57 EHLDQAVEFIENAIS---EGGKVLVHCKAGLSRSGA 89 (133)
T ss_dssp GGHHHHHHHHHHHHH---TTSEEEEEESSSSSHHHH
T ss_pred HHHHHHHHhhhhhhc---ccceeEEEeCCCcccchH
Confidence 345566677776655 679999999999999996
No 29
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=97.56 E-value=5.5e-05 Score=53.85 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=26.8
Q ss_pred EEEEEEeccCccCCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 125 LEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 125 ~~v~~~~~~~W~~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
..+.|+....+.+..++.+.+.+.+.++.+.... ..|++|||..|..|||+
T Consensus 57 I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~~--n~PvLiHC~~G~~rTG~ 107 (164)
T PF03162_consen 57 IKLIHIPMSSSKDPWVPISEEQVAEALEIILDPR--NYPVLIHCNHGKDRTGL 107 (164)
T ss_dssp -EEEE-------GGG----HHHHHHHHHHHH-GG--G-SEEEE-SSSSSHHHH
T ss_pred ceEEEeccccccCccccCCHHHHHHHHHHHhCCC--CCCEEEEeCCCCcchhh
Confidence 3444555555554455656777777777654433 68999999999999996
No 30
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.17 E-value=0.00018 Score=50.42 Aligned_cols=41 Identities=20% Similarity=0.370 Sum_probs=27.3
Q ss_pred cCCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCcccC
Q psy12348 136 QDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 136 ~~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~F 178 (178)
+|+..| +++.+-.|+..++..- ....+++||.+|.|||.+|
T Consensus 101 td~~~P-~~~~iD~fi~~v~~~p-~~~~l~fhC~~G~GRTTt~ 141 (149)
T PF14566_consen 101 TDHQAP-DPEDIDAFINFVKSLP-KDTWLHFHCQAGRGRTTTF 141 (149)
T ss_dssp -TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHH
T ss_pred CCcCCC-CHHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHH
Confidence 455555 5677777777777763 6788999999999999775
No 31
>PRK12361 hypothetical protein; Provisional
Probab=96.87 E-value=0.0013 Score=55.61 Aligned_cols=40 Identities=20% Similarity=0.194 Sum_probs=28.5
Q ss_pred CCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 137 DFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 137 ~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
|...| +.+.+.+.++.+++..+..++++|||.+|.|||++
T Consensus 152 D~~~p-~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~ 191 (547)
T PRK12361 152 DHSVP-TLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVL 191 (547)
T ss_pred CCCCC-cHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHH
Confidence 55555 45555555555555443678999999999999986
No 32
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=96.73 E-value=0.0032 Score=43.72 Aligned_cols=33 Identities=9% Similarity=0.132 Sum_probs=22.2
Q ss_pred ChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCcc
Q psy12348 143 GPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 143 ~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg 176 (178)
.+.-+..++.-+.++- ...|++|||.+|++||-
T Consensus 76 ~e~Hv~~i~DF~~~wp-~~apllIHC~aGISRSt 108 (172)
T COG5350 76 GEAHVRAIIDFADEWP-RFAPLLIHCYAGISRST 108 (172)
T ss_pred CHHHHHHHHHHHhcCc-cccceeeeeccccccch
Confidence 3444444444444443 57999999999999984
No 33
>KOG2283|consensus
Probab=96.62 E-value=0.0023 Score=52.32 Aligned_cols=44 Identities=23% Similarity=0.402 Sum_probs=38.0
Q ss_pred cCccCCCCCCChhHHHHHHHHHHhhCC--CCCcEEEEcCCCCCCccc
Q psy12348 133 HDWQDFSIPGGPDVLVNFCHLVRNSTP--TSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 133 ~~W~~~~~p~~~~~l~~~i~~v~~~~~--~~~pivVhc~~G~gRsg~ 177 (178)
..|+|+.+| +.+.|..+.+.+..+-. ...-++|||.+|-||+|+
T Consensus 78 ~~~~Dh~~P-~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~ 123 (434)
T KOG2283|consen 78 FGFDDHNPP-PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGV 123 (434)
T ss_pred cCCCCCCCC-cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEE
Confidence 589999988 67788888888888876 667799999999999996
No 34
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=96.40 E-value=0.0028 Score=43.63 Aligned_cols=31 Identities=16% Similarity=0.170 Sum_probs=23.9
Q ss_pred ChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 143 GPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 143 ~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
+...+..|.+.++. ..+|+++||..|- |+|+
T Consensus 71 ~~~~v~~f~~~~~~---~~~pvL~HC~sG~-Rt~~ 101 (135)
T TIGR01244 71 TPDDVETFRAAIGA---AEGPVLAYCRSGT-RSSL 101 (135)
T ss_pred CHHHHHHHHHHHHh---CCCCEEEEcCCCh-HHHH
Confidence 45566666666654 5699999999999 9986
No 35
>KOG1718|consensus
Probab=96.39 E-value=0.0027 Score=44.85 Aligned_cols=31 Identities=19% Similarity=0.178 Sum_probs=25.3
Q ss_pred hhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 144 PDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 144 ~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
.+.+-+.|..|.. ..|..+|||-|||+||++
T Consensus 80 fD~vAD~I~~v~~---~gG~TLvHC~AGVSRSAs 110 (198)
T KOG1718|consen 80 FDPVADKIHSVIM---RGGKTLVHCVAGVSRSAS 110 (198)
T ss_pred hhHHHHHHHHHHh---cCCcEEEEEccccchhHH
Confidence 4566777777777 669999999999999975
No 36
>KOG1717|consensus
Probab=95.99 E-value=0.0076 Score=45.74 Aligned_cols=29 Identities=17% Similarity=0.217 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 146 VLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 146 ~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
..+.||.+.+. .+.-++|||-+|++||-|
T Consensus 239 EAIsfIdeArs---k~cgvLVHClaGISRSvT 267 (343)
T KOG1717|consen 239 EAISFIDEARS---KNCGVLVHCLAGISRSVT 267 (343)
T ss_pred HHHHHHHHhhc---cCCcEEEeeeccccchhH
Confidence 34566666665 778899999999999965
No 37
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=95.91 E-value=0.0063 Score=43.19 Aligned_cols=39 Identities=21% Similarity=0.123 Sum_probs=24.1
Q ss_pred cceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCCe
Q psy12348 39 AEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGR 78 (178)
Q Consensus 39 ~~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~~ 78 (178)
..++-+-.|..-|.+|.+.+. +.++++||=|-+..|...
T Consensus 19 g~lyRS~~l~~lt~~d~~~L~-~lgI~tIiDLRs~~E~~~ 57 (164)
T PF13350_consen 19 GRLYRSGNLSNLTEADLERLR-ELGIRTIIDLRSPTERER 57 (164)
T ss_dssp TSEEEES--TT--HHHHHHHH-HTT--EEEE-S-HHHHHH
T ss_pred CcEEecCCcCcCCHHHHHHHH-hCCCCEEEECCCcccccc
Confidence 355667788888999988777 999999999988776543
No 38
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=95.64 E-value=0.0065 Score=40.28 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=23.4
Q ss_pred ChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 143 GPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 143 ~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
+.+.+..|.+.+.. ..+||++||..|- |+++
T Consensus 71 ~~~~v~~f~~~l~~---~~~Pvl~hC~sG~-Ra~~ 101 (110)
T PF04273_consen 71 TEEDVEAFADALES---LPKPVLAHCRSGT-RASA 101 (110)
T ss_dssp -HHHHHHHHHHHHT---TTTSEEEE-SCSH-HHHH
T ss_pred CHHHHHHHHHHHHh---CCCCEEEECCCCh-hHHH
Confidence 57888888888877 4689999999995 7664
No 39
>KOG1716|consensus
Probab=95.45 E-value=0.011 Score=45.81 Aligned_cols=31 Identities=16% Similarity=0.240 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 144 PDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 144 ~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
.....+|+..++. ..+-++|||.+|++||.+
T Consensus 141 ~~~~~~fI~~a~~---~~~~vlVHC~~GvSRSat 171 (285)
T KOG1716|consen 141 FPEAISFIEKARE---KGGKVLVHCQAGVSRSAT 171 (285)
T ss_pred HHHHHHHHHHHHh---CCCeEEEEcCCccchhHH
Confidence 4466777777777 679999999999999975
No 40
>KOG1719|consensus
Probab=95.29 E-value=0.055 Score=37.86 Aligned_cols=39 Identities=13% Similarity=0.224 Sum_probs=28.6
Q ss_pred CCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 138 FSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 138 ~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
.+.| +.+.|..-++-+++.......+-|||-||-|||.+
T Consensus 87 ~~~P-s~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaT 125 (183)
T KOG1719|consen 87 TGAP-SLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSAT 125 (183)
T ss_pred cCCC-CHHHHHHHHHHHHhccccCCeEEEEecCCCccchh
Confidence 3455 45666666666666665667899999999999986
No 41
>PLN02727 NAD kinase
Probab=95.21 E-value=0.019 Score=50.72 Aligned_cols=35 Identities=14% Similarity=0.220 Sum_probs=28.7
Q ss_pred CChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCcccC
Q psy12348 142 GGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 142 ~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~F 178 (178)
.+++.+.+|.+.++.. ...||++||..|.+|+|++
T Consensus 324 pt~EqVe~fa~~l~~s--lpkPVLvHCKSGarRAGam 358 (986)
T PLN02727 324 PSAEQVEKFASLVSDS--SKKPIYLHSKEGVWRTSAM 358 (986)
T ss_pred CCHHHHHHHHHHHHhh--cCCCEEEECCCCCchHHHH
Confidence 3678888998888442 3699999999999999973
No 42
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=94.53 E-value=0.039 Score=42.03 Aligned_cols=32 Identities=16% Similarity=0.272 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 144 PDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 144 ~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
.+.+..++..+... .++|+++||.+|.-|+|.
T Consensus 121 ~e~~~~~~~l~~~~--e~~PvL~HC~~GkdRTGl 152 (249)
T COG2365 121 AERLVELLQLLADA--ENGPVLIHCTAGKDRTGL 152 (249)
T ss_pred HHHHHHHHHHHhhc--ccCCEEEecCCCCcchHH
Confidence 34555555555442 259999999999999996
No 43
>KOG4471|consensus
Probab=92.66 E-value=0.13 Score=43.35 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
.+.|++||||||=.|+.
T Consensus 373 ~~~sVlVHCSDGWDRT~ 389 (717)
T KOG4471|consen 373 ESRSVLVHCSDGWDRTA 389 (717)
T ss_pred CCceEEEEcCCCccchH
Confidence 78999999999999974
No 44
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=92.50 E-value=0.037 Score=43.56 Aligned_cols=58 Identities=31% Similarity=0.791 Sum_probs=43.5
Q ss_pred Cceecccc--CCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCC-----CcHHHHhhH
Q psy12348 1 MAYFNSQW--GFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKA-----DTVADFWTM 58 (178)
Q Consensus 1 ~~~~n~~~--~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~-----~t~~~FW~m 58 (178)
.||+|++| +|+..+.+|+.|+|-.+.+..-|=.-...+-..|+.-.++. .....||-.
T Consensus 78 ~dYINAsyV~g~~~~~~yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~YWp~ 142 (312)
T PHA02747 78 SDYIHANWIDGFEDDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCL 142 (312)
T ss_pred CCcEEeeeecCCCCCCeEEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCCcccccccCCC
Confidence 38999998 79988999999999999888766544444557777766654 235678854
No 45
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=90.39 E-value=0.069 Score=41.86 Aligned_cols=58 Identities=21% Similarity=0.513 Sum_probs=42.4
Q ss_pred Cceecccc--CCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCC----CcHHHHhhH
Q psy12348 1 MAYFNSQW--GFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKA----DTVADFWTM 58 (178)
Q Consensus 1 ~~~~n~~~--~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~----~t~~~FW~m 58 (178)
.||||++| +|+..+.+|+.|+|-.+.++.-|=.-...+-..|+.-.++. .....||-.
T Consensus 78 ~dYINAsyI~g~~~~~~fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~YWp~ 141 (303)
T PHA02742 78 DDFINASYVDGHNAKGRFICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMP 141 (303)
T ss_pred CCcEEEeeecCCCCCCeEEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccccCCC
Confidence 48999998 88888899999999998877766444444556777666643 346678854
No 46
>PHA02738 hypothetical protein; Provisional
Probab=89.21 E-value=0.069 Score=42.19 Aligned_cols=58 Identities=24% Similarity=0.520 Sum_probs=42.9
Q ss_pred Cceecccc--CCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCC----CcHHHHhhH
Q psy12348 1 MAYFNSQW--GFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKA----DTVADFWTM 58 (178)
Q Consensus 1 ~~~~n~~~--~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~----~t~~~FW~m 58 (178)
.||+|++| +|+..+.+|+.|+|-.+.++.-|=.-...+-..|+.-.+.. .....||-.
T Consensus 75 ~dYINAsyVdg~~~~~kfI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~YWp~ 138 (320)
T PHA02738 75 GDYINANYVDGFEYKKKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSD 138 (320)
T ss_pred CCceEeEEecCCCCCceeEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccccCCC
Confidence 38999998 79988999999999998888766443344556777666653 345677864
No 47
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=89.03 E-value=0.095 Score=41.48 Aligned_cols=57 Identities=32% Similarity=0.634 Sum_probs=39.7
Q ss_pred ceecccc--CCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCCC---cHHHHhhH
Q psy12348 2 AYFNSQW--GFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKAD---TVADFWTM 58 (178)
Q Consensus 2 ~~~n~~~--~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~---t~~~FW~m 58 (178)
|||||+| +|...+.+|++|+|-.+.+..-|=--...+-..|+.=.++.+ ....+|-.
T Consensus 99 dYINAsyV~g~~~~~~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~e~~~kc~~YWP~ 160 (323)
T PHA02746 99 NYIHANFVDGFKEANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDDDDEKCFELWTK 160 (323)
T ss_pred CeEEEecccCCCCCCeEEEeCCCChhhHHHHHHHHHhhCCCEEEEecccccCCccCCCCCCC
Confidence 8999998 788888999999999988776664333344456665444332 34557754
No 48
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=88.62 E-value=0.1 Score=40.86 Aligned_cols=57 Identities=19% Similarity=0.397 Sum_probs=41.1
Q ss_pred ceecccc--CCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCCC-cHH-HHhhH
Q psy12348 2 AYFNSQW--GFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKAD-TVA-DFWTM 58 (178)
Q Consensus 2 ~~~n~~~--~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~-t~~-~FW~m 58 (178)
||+|++| +|+..+.+|+.|+|-.+.+..-|=.-...+-..|+.-....+ ... .+|-.
T Consensus 77 ~YINAnyVdG~~~~~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e~kc~~~YWP~ 137 (298)
T PHA02740 77 KVLDARFVDGYDFEQKFICIINLCEDACDKFLQALSDNKVQIIVLISRHADKKCFNQFWSL 137 (298)
T ss_pred CcEEEEEecCCCCCCcEEEecCCchhhHHHHHHHHHhcCCCEEEEccccccccccccCCCC
Confidence 7999998 999999999999998888766553333345577776665543 334 67753
No 49
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=85.00 E-value=0.2 Score=38.11 Aligned_cols=57 Identities=32% Similarity=0.641 Sum_probs=41.7
Q ss_pred ceecccc--CCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCC----CcHHHHhhH
Q psy12348 2 AYFNSQW--GFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKA----DTVADFWTM 58 (178)
Q Consensus 2 ~~~n~~~--~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~----~t~~~FW~m 58 (178)
||||++| +++..+.+|+.|+|-.+.+..-|=--...+-+.|+.-.+.. .....||..
T Consensus 55 ~YInAs~v~~~~~~~~fI~tQ~P~~~t~~dFW~mv~~~~~~~IVmL~~~~e~~~~~~~~Ywp~ 117 (258)
T smart00194 55 DYINASYIDGPNGPKAYIATQGPLPSTVEDFWRMVWEEKVTTIVMLTELEEKGREKCAQYWPE 117 (258)
T ss_pred CceeeeeEecCCCccceEEeCCCchHHHHHHHHHHHhcCCCEEEEeccceeCCEeeccccCCC
Confidence 7999997 88788899999999988776666444445556777666543 346778875
No 50
>KOG2386|consensus
Probab=84.94 E-value=1.6 Score=35.48 Aligned_cols=36 Identities=25% Similarity=0.497 Sum_probs=24.3
Q ss_pred CCCChhHHHHHHHHHHhhCC----CCCcEEEEcCCCCCCcc
Q psy12348 140 IPGGPDVLVNFCHLVRNSTP----TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 140 ~p~~~~~l~~~i~~v~~~~~----~~~pivVhc~~G~gRsg 176 (178)
+| +......|++.+..... ...-|.|||..|..|+|
T Consensus 100 vp-~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~Nrtg 139 (393)
T KOG2386|consen 100 VP-RTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTG 139 (393)
T ss_pred CC-CccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccc
Confidence 45 33444455555554443 56779999999999998
No 51
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=81.91 E-value=0.38 Score=35.86 Aligned_cols=57 Identities=32% Similarity=0.697 Sum_probs=41.7
Q ss_pred ceecccc--CCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCC----CcHHHHhhH
Q psy12348 2 AYFNSQW--GFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKA----DTVADFWTM 58 (178)
Q Consensus 2 ~~~n~~~--~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~----~t~~~FW~m 58 (178)
+|+|++| +++..+.+|..|.|..+.+..-|=--...+-+.|+.-.+.. +....||..
T Consensus 27 ~yinA~~v~~~~~~~~fI~tQ~P~~~t~~~FW~mv~~~~~~~IV~l~~~~e~~~~~~~~Ywp~ 89 (231)
T cd00047 27 DYINASYIDGYNPPKAYIATQGPLPNTVEDFWRMVWEQKVPVIVMLTELVEKGREKCAQYWPE 89 (231)
T ss_pred CcEEeeeEecCCCCcceEEcCCCChhhHHHHHHHHHhcCCCEEEEccccccCCCccCccCCCC
Confidence 7999997 88878899999999998766655444445567777665543 346778875
No 52
>KOG1089|consensus
Probab=78.82 E-value=2.5 Score=35.97 Aligned_cols=17 Identities=18% Similarity=0.325 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
...++||||++|-.|+.
T Consensus 343 ~~~sVlvhcsdGwDrT~ 359 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTC 359 (573)
T ss_pred CCCeEEEEccCCcchhH
Confidence 56899999999999874
No 53
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=77.77 E-value=2.2 Score=34.31 Aligned_cols=17 Identities=18% Similarity=0.389 Sum_probs=13.6
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
...+++|||++|-.|+.
T Consensus 230 ~~~~Vlvh~~dGwDrt~ 246 (353)
T PF06602_consen 230 EGSSVLVHCSDGWDRTS 246 (353)
T ss_dssp T--EEEEECTTSSSHHH
T ss_pred cCceEEEEcCCCCcccH
Confidence 67899999999999875
No 54
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.96 E-value=6.1 Score=26.61 Aligned_cols=29 Identities=10% Similarity=0.074 Sum_probs=22.9
Q ss_pred ChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCc
Q psy12348 143 GPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQL 175 (178)
Q Consensus 143 ~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRs 175 (178)
....+-.|...+.+ ..+|++.||..|. ||
T Consensus 72 T~~dV~~f~~Al~e---aegPVlayCrsGt-Rs 100 (130)
T COG3453 72 TEADVEAFQRALDE---AEGPVLAYCRSGT-RS 100 (130)
T ss_pred CHHHHHHHHHHHHH---hCCCEEeeecCCc-hH
Confidence 46777788888877 5699999999995 43
No 55
>KOG1572|consensus
Probab=74.72 E-value=6 Score=29.87 Aligned_cols=31 Identities=6% Similarity=0.112 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHhhCCCCCcEEEEcCCCCCCccc
Q psy12348 145 DVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLKE 177 (178)
Q Consensus 145 ~~l~~~i~~v~~~~~~~~pivVhc~~G~gRsg~ 177 (178)
..+..-++.+-.. .+.|++|||.-|=-|+|+
T Consensus 134 ~~i~~~l~~lld~--~N~P~Lihc~rGkhRtg~ 164 (249)
T KOG1572|consen 134 HSIRKALKVLLDK--RNYPILIHCKRGKHRTGC 164 (249)
T ss_pred HHHHHHHHHHhcc--cCCceEEecCCCCcchhh
Confidence 4444444443222 589999999999999996
No 56
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=65.61 E-value=2.2 Score=32.73 Aligned_cols=58 Identities=26% Similarity=0.467 Sum_probs=38.5
Q ss_pred ceecccc-CCCCcchhhhccCCCCcccccceeeccc--CCcceEEecCCCCCcHHHHhhHhh
Q psy12348 2 AYFNSQW-GFSNEAEYIAAQGPKADTVADFWTMGFS--NEAEYIAAQGPKADTVADFWTMVL 60 (178)
Q Consensus 2 ~~~n~~~-~~~~~~~~~~~~~~~~dyinAs~i~g~~--~~~~~I~~Q~P~~~t~~~FW~mv~ 60 (178)
||+|+++ +-.+ ..||+.|+|.+.-+..-|=--.. .....|+.=.++.+--..=|..-|
T Consensus 80 DYINAS~ik~~~-~~yIAtQgP~~~t~ddFW~mvw~n~~~~gvIVmLt~l~E~~rekc~qYW 140 (302)
T COG5599 80 DYINASYIKTPR-GKYIATQGPKPETIDDFWKMVWHNVPNNGVIVMLTSLPEYNREKCDQYW 140 (302)
T ss_pred hcccceeeecCC-CceEEecCCCCchHHHHHHHHHhcCCCceEEEEecChHHHhHHHHhhhC
Confidence 8999998 5555 45999999999988776632111 235788888887654333333333
No 57
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=63.14 E-value=4.9 Score=25.68 Aligned_cols=16 Identities=19% Similarity=0.154 Sum_probs=13.0
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
...|++|+|..|. ||+
T Consensus 60 ~~~~ivv~C~~G~-rS~ 75 (110)
T COG0607 60 DDDPIVVYCASGV-RSA 75 (110)
T ss_pred CCCeEEEEeCCCC-ChH
Confidence 5799999999995 554
No 58
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=62.32 E-value=5.8 Score=25.10 Aligned_cols=16 Identities=19% Similarity=0.079 Sum_probs=12.7
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
...||+|+|..|. ||.
T Consensus 60 ~~~~ivv~C~~G~-rs~ 75 (100)
T cd01523 60 DDQEVTVICAKEG-SSQ 75 (100)
T ss_pred CCCeEEEEcCCCC-cHH
Confidence 5689999999884 653
No 59
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=60.92 E-value=12 Score=19.97 Aligned_cols=24 Identities=13% Similarity=0.416 Sum_probs=19.5
Q ss_pred EEeccCccCCCCCCChhHHHHHHH
Q psy12348 129 HFHLHDWQDFSIPGGPDVLVNFCH 152 (178)
Q Consensus 129 ~~~~~~W~~~~~p~~~~~l~~~i~ 152 (178)
+|++.+||--|+|.-.+++++.+.
T Consensus 2 ~~~~AG~~~~G~~ql~ESLLdrIt 25 (45)
T PF02061_consen 2 QYAIAGWPRMGCPQLSESLLDRIT 25 (45)
T ss_pred eeeecCccccCCchhhHHHHHHHH
Confidence 578899999999977788887664
No 60
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=59.48 E-value=1.3 Score=32.70 Aligned_cols=56 Identities=27% Similarity=0.692 Sum_probs=35.9
Q ss_pred ceecccc--CCCCcchhhhccCCCCcccccceeecccCCcceEEecCCCCC----cHHHHhh
Q psy12348 2 AYFNSQW--GFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKAD----TVADFWT 57 (178)
Q Consensus 2 ~~~n~~~--~~~~~~~~~~~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~----t~~~FW~ 57 (178)
+|||++| .+...+.+|..|.|..+-+..-|=--...+-..|+.=.+..+ +...||-
T Consensus 28 ~yi~A~~v~~~~~~~~~I~~q~P~~~t~~~FW~mv~~~~~~~Iv~L~~~~e~~~~~~~~y~P 89 (235)
T PF00102_consen 28 DYINASYVDGYKNGKKFIVTQAPMPDTIEDFWQMVWEQKVQIIVMLCSFDESGDEKCDQYWP 89 (235)
T ss_dssp TEESEEEEEESSSTEEEEEEES-SGGGHHHHHHHHHHTTBSEEEEESBSEETTEESS--TST
T ss_pred chhhhhhhccccchhhheeecccccccccceehheeeccccceecccccccccccccccccc
Confidence 6999997 577788999999998777655543333344566665554433 6777776
No 61
>PF06165 Glyco_transf_36: Glycosyltransferase family 36; InterPro: IPR010383 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. The glycosyltransferase family 36 includes cellobiose phosphorylase (2.4.1.20 from EC), cellodextrin phosphorylase (2.4.1.49 from EC), and chitobiose phosphorylase. Many members of this family contain two copies of the domain represented in this entry.; PDB: 3QDE_A 3RRS_B 1V7V_A 1V7W_A 1V7X_A 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A ....
Probab=59.26 E-value=48 Score=21.69 Aligned_cols=41 Identities=17% Similarity=0.159 Sum_probs=28.2
Q ss_pred ecEEEEEeEEE-eccceeEEEEEEEeCC-ceEEEEEEeccCcc
Q psy12348 96 NNIRVGCTEQE-VGSHHTCTHLRITRDS-EVLEVKHFHLHDWQ 136 (178)
Q Consensus 96 g~~~V~~~~~~-~~~~~~~r~l~l~~~~-~~~~v~~~~~~~W~ 136 (178)
+++.+++.-.. ..+...++.|+|++.+ ..|.+..+-|..|-
T Consensus 48 ~gi~~~~~v~V~~~~~vEi~~l~l~N~~~~~r~L~vtsy~E~v 90 (110)
T PF06165_consen 48 GGIETELTVFVPPDDPVEIRRLRLTNTSNRPRRLSVTSYAEWV 90 (110)
T ss_dssp TTEEEEEEEE--TTSSEEEEEEEEEE-SSS-EEEEEEEEEEEE
T ss_pred CCEEEEEEEEEcCCCCEEEEEEEEEECcCCcEEEEEEEEEEEe
Confidence 34444443333 4478899999999965 89999999998884
No 62
>KOG1530|consensus
Probab=57.84 E-value=11 Score=25.76 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=19.2
Q ss_pred HHHHHHHHhhCC-CCCcEEEEcCCCCCCcc
Q psy12348 148 VNFCHLVRNSTP-TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 148 ~~~i~~v~~~~~-~~~pivVhc~~G~gRsg 176 (178)
.+|++.+-.... ....||++|..|. |+.
T Consensus 75 ~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~ 103 (136)
T KOG1530|consen 75 PEFLKQVGSSKPPHDKEIIFGCASGV-RSL 103 (136)
T ss_pred HHHHHHhcccCCCCCCcEEEEeccCc-chh
Confidence 356666655554 4459999999995 654
No 63
>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=50.99 E-value=27 Score=22.49 Aligned_cols=25 Identities=4% Similarity=-0.045 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHhhCCCCCcEEEEcCCCC
Q psy12348 145 DVLVNFCHLVRNSTPTSQLSVVHCRHLF 172 (178)
Q Consensus 145 ~~l~~~i~~v~~~~~~~~pivVhc~~G~ 172 (178)
...++++.+++. ..+|++.|=|.|+
T Consensus 11 ~aAl~Li~~l~~---~hgpvmFHQSGGC 35 (116)
T COG3564 11 PAALDLIAELQA---EHGPVMFHQSGGC 35 (116)
T ss_pred HHHHHHHHHHHH---hcCCEEEeccCCc
Confidence 456778888877 6699999977665
No 64
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=46.81 E-value=31 Score=22.51 Aligned_cols=31 Identities=10% Similarity=-0.095 Sum_probs=19.6
Q ss_pred ChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCc
Q psy12348 143 GPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQL 175 (178)
Q Consensus 143 ~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRs 175 (178)
+++.+.+++..... ....||+++|..|..|+
T Consensus 63 ~~~~~~~~~~~~~~--~~~~~vv~~c~~g~~~a 93 (122)
T cd01448 63 SPEEFAELLGSLGI--SNDDTVVVYDDGGGFFA 93 (122)
T ss_pred CHHHHHHHHHHcCC--CCCCEEEEECCCCCccH
Confidence 45666666654311 15789999999973343
No 65
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=46.76 E-value=30 Score=23.43 Aligned_cols=28 Identities=11% Similarity=0.106 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhCC-CCCcEEEEcCCCCC
Q psy12348 146 VLVNFCHLVRNSTP-TSQLSVVHCRHLFT 173 (178)
Q Consensus 146 ~l~~~i~~v~~~~~-~~~pivVhc~~G~g 173 (178)
.|-.+.+.+..... ..+.+|||||...+
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 56666666665422 46889999996554
No 66
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=44.10 E-value=18 Score=23.46 Aligned_cols=16 Identities=13% Similarity=0.150 Sum_probs=12.1
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
...+|+++|..|..|+
T Consensus 65 ~~~~iv~~C~~~g~rs 80 (113)
T cd01443 65 GVKLAIFYCGSSQGRG 80 (113)
T ss_pred CCCEEEEECCCCCccc
Confidence 3578999999765564
No 67
>KOG1147|consensus
Probab=43.35 E-value=4.1 Score=34.55 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.6
Q ss_pred cceEEecCCCCCcHHHHhhHhhhCCccE
Q psy12348 39 AEYIAAQGPKADTVADFWTMVLQHQVVK 66 (178)
Q Consensus 39 ~~~I~~Q~P~~~t~~~FW~mv~~~~v~~ 66 (178)
+.||++|+|..+.+.-=|.-||.-|-.+
T Consensus 475 kqfIl~QG~Sk~v~~meWdkiWAfNKKv 502 (712)
T KOG1147|consen 475 KQFILAQGPSKNVVTMEWDKIWAFNKKV 502 (712)
T ss_pred HHHHHHhCCccceeeeehHhhhhhcccc
Confidence 5899999999999888899999765443
No 68
>PLN02160 thiosulfate sulfurtransferase
Probab=43.10 E-value=34 Score=23.30 Aligned_cols=16 Identities=13% Similarity=0.135 Sum_probs=12.8
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
...||+++|..| +||.
T Consensus 80 ~~~~IivyC~sG-~RS~ 95 (136)
T PLN02160 80 PADDILVGCQSG-ARSL 95 (136)
T ss_pred CCCcEEEECCCc-HHHH
Confidence 568999999988 4664
No 69
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=41.98 E-value=18 Score=22.79 Aligned_cols=16 Identities=6% Similarity=0.131 Sum_probs=12.6
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
...||+|+|..| .||.
T Consensus 60 ~~~~ivvyC~~G-~rs~ 75 (101)
T cd01518 60 KGKKVLMYCTGG-IRCE 75 (101)
T ss_pred CCCEEEEECCCc-hhHH
Confidence 568999999887 4654
No 70
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=41.72 E-value=20 Score=23.64 Aligned_cols=16 Identities=19% Similarity=0.140 Sum_probs=12.9
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
.+.||+++|..|. ||.
T Consensus 71 ~~~~ivv~C~~G~-rs~ 86 (122)
T cd01526 71 KDSPIYVVCRRGN-DSQ 86 (122)
T ss_pred CCCcEEEECCCCC-cHH
Confidence 5789999999884 663
No 71
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=39.93 E-value=22 Score=22.79 Aligned_cols=15 Identities=20% Similarity=0.186 Sum_probs=12.0
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
...||+|+|..|. ||
T Consensus 65 ~~~~ivv~C~~G~-rs 79 (109)
T cd01533 65 PRTPIVVNCAGRT-RS 79 (109)
T ss_pred CCCeEEEECCCCc-hH
Confidence 3579999999885 65
No 72
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=39.62 E-value=16 Score=25.72 Aligned_cols=17 Identities=12% Similarity=-0.142 Sum_probs=14.0
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
.+.|||+.|..|+.||.
T Consensus 115 ~d~~IVvYC~~G~~~S~ 131 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSW 131 (162)
T ss_pred CCCEEEEEECCCCHHHH
Confidence 57899999999876654
No 73
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=39.50 E-value=25 Score=21.74 Aligned_cols=13 Identities=31% Similarity=0.291 Sum_probs=10.8
Q ss_pred CCCcEEEEcCCCC
Q psy12348 160 TSQLSVVHCRHLF 172 (178)
Q Consensus 160 ~~~pivVhc~~G~ 172 (178)
...||+|+|..|.
T Consensus 55 ~~~~ivv~c~~g~ 67 (96)
T cd01444 55 RDRPVVVYCYHGN 67 (96)
T ss_pred CCCCEEEEeCCCC
Confidence 5789999999664
No 74
>KOG0791|consensus
Probab=39.30 E-value=11 Score=30.42 Aligned_cols=30 Identities=43% Similarity=0.996 Sum_probs=24.8
Q ss_pred ceecccc--CCCCcchhhhccCCCCcccccce
Q psy12348 2 AYFNSQW--GFSNEAEYIAAQGPKADTVADFW 31 (178)
Q Consensus 2 ~~~n~~~--~~~~~~~~~~~~~~~~dyinAs~ 31 (178)
||+|++| ++...+.++++|||...-.+--|
T Consensus 151 DYinA~~~Pg~~s~~~fIAtQGPlp~t~~~fW 182 (374)
T KOG0791|consen 151 DYINASYIPGYNSPREFIATQGPLPETRDDFW 182 (374)
T ss_pred hhhhhhhcCCCCCcceEEEeeCCCCCChhHHH
Confidence 8999998 67888999999998877765544
No 75
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=38.75 E-value=24 Score=22.11 Aligned_cols=15 Identities=13% Similarity=0.009 Sum_probs=11.6
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
...||+|+|..| .|+
T Consensus 60 ~~~~ivv~c~~g-~~s 74 (103)
T cd01447 60 EDKPFVFYCASG-WRS 74 (103)
T ss_pred CCCeEEEEcCCC-CcH
Confidence 568999999877 354
No 76
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=35.72 E-value=60 Score=26.70 Aligned_cols=39 Identities=3% Similarity=-0.025 Sum_probs=27.3
Q ss_pred CCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcC--CCCCCcccC
Q psy12348 137 DFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCR--HLFTQLKEF 178 (178)
Q Consensus 137 ~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~--~G~gRsg~F 178 (178)
+.|+..-+..++.-++++-+ ..+-++|..- .|+||||.|
T Consensus 196 EgGV~~~~~~fl~~lr~lCd---~~g~LLI~DEVQtG~GRTGk~ 236 (404)
T COG4992 196 EGGVIPAPPEFLKALRELCD---EHGALLILDEVQTGLGRTGKL 236 (404)
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhCeEEEEeccccCCCccchH
Confidence 55666566666666666554 5677888765 899999964
No 77
>PF02035 Coagulin: Coagulin; InterPro: IPR000275 Coagulogen is a gel-forming protein of hemolymph that hinders the spread of invaders by immobilising them [, ]. The protein contains a single 175- residue polypeptide chain; this is cleaved after Arg-18 and Arg-46 by a clotting enzyme contained in the hemocyte and activated by a bacterial endotoxin (lipopolysaccharide). Cleavage releases two chains of coagulin, A and B, linked by two disulphide bonds, together with the peptide C [, ]. Gel formation results from interlinking of coagulin molecules. Secondary structure prediction suggests the C peptide forms an alpha- helix, which is released during the proteolytic conversion of coagulogen to coagulin gel []. The beta-sheet structure and 16 half-cystines found in the molecule appear to yield a compact protein stable to acid and heat. Mammalian blood coagulation is based on the proteolytically induced polymerisation of fibrinogens. Initially, fibrin monomers noncovalently interact with each other. The resulting homopolymers are further stabilised when the plasma transglutaminase (TGase) intermolecularly cross-links epsilon-(gamma-glutamyl)lysine bonds. In crustaceans, hemolymph coagulation depends on the TGase-mediated cross-linking of specific plasma-clotting proteins, but without the proteolytic cascade. In horseshoe crabs, the proteolytic coagulation cascade triggered by lipopolysaccharides and beta-1,3-glucans leads to the conversion of coagulogen into coagulin, resulting in noncovalent coagulin homopolymers through head-to-tail interaction. Horseshoe crab TGase, however, does not cross-link coagulins intermolecularly. Recently, we found that coagulins are cross-linked on hemocyte cell surface proteins called proxins. This indicates that a cross-linking reaction at the final stage of hemolymph coagulation is an important innate immune system of horseshoe crabs [].; GO: 0042381 hemolymph coagulation, 0005576 extracellular region; PDB: 1AOC_A.
Probab=35.29 E-value=14 Score=25.04 Aligned_cols=29 Identities=31% Similarity=0.617 Sum_probs=13.6
Q ss_pred cccCCcce-EEecCCCCCcHHHHhhHhhhCCccE
Q psy12348 34 GFSNEAEY-IAAQGPKADTVADFWTMVLQHQVVK 66 (178)
Q Consensus 34 g~~~~~~~-I~~Q~P~~~t~~~FW~mv~~~~v~~ 66 (178)
||-....| |+.|+|.. .|-+.|||+++..
T Consensus 98 gyt~a~efrvivqapra----gfrqcvwqhkcra 127 (174)
T PF02035_consen 98 GYTVAGEFRVIVQAPRA----GFRQCVWQHKCRA 127 (174)
T ss_dssp EE-TTS-EEEE--BCCC----TB-B---EEEET-
T ss_pred cceecceEEEEEeCchh----hHHHHHHHhhhcc
Confidence 34333344 78899976 5788999998874
No 78
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=33.99 E-value=28 Score=23.08 Aligned_cols=16 Identities=13% Similarity=0.301 Sum_probs=11.6
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
...+|++||..+..||
T Consensus 67 ~~~~vv~yC~~sg~rs 82 (121)
T cd01530 67 KRRVLIFHCEFSSKRG 82 (121)
T ss_pred CCCEEEEECCCccccH
Confidence 5789999997333565
No 79
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=32.56 E-value=32 Score=22.22 Aligned_cols=16 Identities=19% Similarity=0.204 Sum_probs=11.3
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
.+.++|++|..+-.|+
T Consensus 61 ~~~~iv~yC~~~~~r~ 76 (113)
T cd01531 61 KKDTVVFHCALSQVRG 76 (113)
T ss_pred CCCeEEEEeecCCcch
Confidence 4579999998443454
No 80
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=32.31 E-value=74 Score=21.12 Aligned_cols=17 Identities=6% Similarity=0.018 Sum_probs=12.6
Q ss_pred CCCcEEEEcCCCCCCcc
Q psy12348 160 TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 160 ~~~pivVhc~~G~gRsg 176 (178)
.+.+|+|.|..|..||.
T Consensus 85 ~~~~vvvyC~~~G~rs~ 101 (128)
T cd01520 85 RDPKLLIYCARGGMRSQ 101 (128)
T ss_pred CCCeEEEEeCCCCccHH
Confidence 67899999975545654
No 81
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=29.96 E-value=37 Score=21.33 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=11.8
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
...|+++.|..| .||
T Consensus 57 ~~~~vv~~c~~g-~rs 71 (101)
T cd01528 57 PDKDIVVLCHHG-GRS 71 (101)
T ss_pred CCCeEEEEeCCC-chH
Confidence 468999999987 455
No 82
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=29.79 E-value=25 Score=22.23 Aligned_cols=15 Identities=7% Similarity=0.053 Sum_probs=11.7
Q ss_pred CCcEEEEcCCCCCCcc
Q psy12348 161 SQLSVVHCRHLFTQLK 176 (178)
Q Consensus 161 ~~pivVhc~~G~gRsg 176 (178)
..+|+++|..|. ||+
T Consensus 65 ~~~vv~~c~~g~-~s~ 79 (105)
T cd01525 65 GKIIVIVSHSHK-HAA 79 (105)
T ss_pred CCeEEEEeCCCc-cHH
Confidence 578999998885 554
No 83
>COG4004 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.76 E-value=86 Score=20.00 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=29.1
Q ss_pred CCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCc
Q psy12348 137 DFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQL 175 (178)
Q Consensus 137 ~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRs 175 (178)
..|.+++++.|..+++++--.....|-.+|.++.|+.|.
T Consensus 7 krGf~~~~dri~~~l~e~g~~v~~eGD~ivas~pgis~i 45 (96)
T COG4004 7 KRGFKPDPDRIMRGLSELGWTVSEEGDRIVASSPGISRI 45 (96)
T ss_pred ccCCCCCHHHHHHHHHHhCeeEeecccEEEEecCCceEE
Confidence 456778899999999987533224566999989888764
No 84
>PF10339 Vel1p: Yeast-specific zinc responsive; InterPro: IPR019435 This entry represents putative velum formation proteins found in fungi. They are of unknown function but are highly induced in zinc-depleted conditions and have increased expression in NAP1 deletion mutants [].
Probab=28.64 E-value=53 Score=23.42 Aligned_cols=38 Identities=16% Similarity=0.262 Sum_probs=28.8
Q ss_pred ceEEecCCCCCcHHHHhhHhhhCCccEEEEcccceeCC
Q psy12348 40 EYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKG 77 (178)
Q Consensus 40 ~~I~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~e~~ 77 (178)
++.+.-.-+.+..+|||....++..+.|=.|+...+..
T Consensus 52 ~~fVGadaLt~~a~daw~R~L~qE~RfiPrLtTv~~N~ 89 (203)
T PF10339_consen 52 KTFVGADALTESAGDAWGRYLEQETRFIPRLTTVAENE 89 (203)
T ss_pred eeeechhhhccchhHHHHHHhccCcccccceeeeeccC
Confidence 44444445788999999999999999988887765543
No 85
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=28.13 E-value=81 Score=24.22 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=15.1
Q ss_pred hHHHHHHHHHHhhCCCCCcEEEEcCC
Q psy12348 145 DVLVNFCHLVRNSTPTSQLSVVHCRH 170 (178)
Q Consensus 145 ~~l~~~i~~v~~~~~~~~pivVhc~~ 170 (178)
+.|...++..++ .+-|++|||++
T Consensus 112 ~~F~~ql~lA~~---~~lPviIH~R~ 134 (256)
T COG0084 112 EVFEAQLELAKE---LNLPVIIHTRD 134 (256)
T ss_pred HHHHHHHHHHHH---cCCCEEEEccc
Confidence 455555555555 55788888876
No 86
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=28.11 E-value=79 Score=24.74 Aligned_cols=24 Identities=8% Similarity=-0.039 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCCCCcEEEEcCCCCC
Q psy12348 148 VNFCHLVRNSTPTSQLSVVHCRHLFT 173 (178)
Q Consensus 148 ~~~i~~v~~~~~~~~pivVhc~~G~g 173 (178)
+++++.+++.- +-|+|.|...|++
T Consensus 195 ~~~L~~I~~~v--~vPLVlHGgSG~~ 218 (288)
T TIGR00167 195 FERLEEIQKYV--NLPLVLHGGSGIP 218 (288)
T ss_pred HHHHHHHHHHh--CCCEEEeCCCCCC
Confidence 45566666544 6899999998886
No 87
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=28.11 E-value=68 Score=20.14 Aligned_cols=15 Identities=7% Similarity=0.151 Sum_probs=11.8
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
...||+|+|..|. |+
T Consensus 65 ~~~~ivv~c~~g~-~s 79 (106)
T cd01519 65 KDKELIFYCKAGV-RS 79 (106)
T ss_pred CCCeEEEECCCcH-HH
Confidence 4689999999875 44
No 88
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=27.89 E-value=45 Score=20.64 Aligned_cols=13 Identities=15% Similarity=-0.299 Sum_probs=10.9
Q ss_pred CCCcEEEEcCCCC
Q psy12348 160 TSQLSVVHCRHLF 172 (178)
Q Consensus 160 ~~~pivVhc~~G~ 172 (178)
...||+|.|..|.
T Consensus 49 ~~~~ivl~c~~G~ 61 (92)
T cd01532 49 RDTPIVVYGEGGG 61 (92)
T ss_pred CCCeEEEEeCCCC
Confidence 4789999999885
No 89
>COG5061 ERO1 Oxidoreductin, endoplasmic reticulum membrane-associated protein involved in disulfide bond formation [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=27.84 E-value=41 Score=27.07 Aligned_cols=19 Identities=11% Similarity=0.494 Sum_probs=16.2
Q ss_pred CcHHHHhhHhhhCCccEEE
Q psy12348 50 DTVADFWTMVLQHQVVKIV 68 (178)
Q Consensus 50 ~t~~~FW~mv~~~~v~~IV 68 (178)
++.+.-|+||||+++..+-
T Consensus 154 ~hSa~IWr~Iyeqncfd~~ 172 (425)
T COG5061 154 NHSAEIWRKIYEQNCFDTL 172 (425)
T ss_pred CchHHHHHHHHHhhccccC
Confidence 5688899999999998764
No 90
>COG5228 POP2 mRNA deadenylase subunit [RNA processing and modification]
Probab=27.80 E-value=30 Score=25.96 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.3
Q ss_pred EEecCCCCCcHHHHhhHhhhC
Q psy12348 42 IAAQGPKADTVADFWTMVLQH 62 (178)
Q Consensus 42 I~~Q~P~~~t~~~FW~mv~~~ 62 (178)
|++|.|+|+..+||.+.+.+.
T Consensus 176 ilt~~plP~~~EdFy~~l~~y 196 (299)
T COG5228 176 ILTNDPLPNNKEDFYWWLHQY 196 (299)
T ss_pred HHhcCCCCccHHHHHHHHHHH
Confidence 789999999999999987643
No 91
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=27.71 E-value=91 Score=20.31 Aligned_cols=15 Identities=13% Similarity=0.189 Sum_probs=11.9
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
...||+++|..|. ||
T Consensus 63 ~~~~ivv~C~~G~-rs 77 (117)
T cd01522 63 KDRPVLLLCRSGN-RS 77 (117)
T ss_pred CCCeEEEEcCCCc-cH
Confidence 5689999998884 54
No 92
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=27.66 E-value=78 Score=24.70 Aligned_cols=24 Identities=13% Similarity=0.015 Sum_probs=17.6
Q ss_pred HHHHHHHHhhCCCCCcEEEEcCCCCC
Q psy12348 148 VNFCHLVRNSTPTSQLSVVHCRHLFT 173 (178)
Q Consensus 148 ~~~i~~v~~~~~~~~pivVhc~~G~g 173 (178)
+++++++++.- +-|+|.|++.|+.
T Consensus 189 f~~L~~I~~~~--~iPLVlHGgSG~~ 212 (282)
T TIGR01858 189 FDRLAEIREVV--DVPLVLHGASDVP 212 (282)
T ss_pred HHHHHHHHHHh--CCCeEEecCCCCC
Confidence 55666666543 5799999988875
No 93
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=27.26 E-value=96 Score=20.03 Aligned_cols=15 Identities=13% Similarity=0.102 Sum_probs=11.4
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
...+|+++|..| .||
T Consensus 59 ~~~~IVlyC~~G-~rS 73 (104)
T PRK10287 59 KNDTVKLYCNAG-RQS 73 (104)
T ss_pred CCCeEEEEeCCC-hHH
Confidence 457899999987 344
No 94
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=26.60 E-value=56 Score=25.18 Aligned_cols=13 Identities=8% Similarity=0.123 Sum_probs=11.0
Q ss_pred CCCcEEEEcCCCC
Q psy12348 160 TSQLSVVHCRHLF 172 (178)
Q Consensus 160 ~~~pivVhc~~G~ 172 (178)
...||+++|..|.
T Consensus 230 ~~~~ii~yC~~G~ 242 (281)
T PRK11493 230 FDRPIIASCGSGV 242 (281)
T ss_pred CCCCEEEECCcHH
Confidence 4679999999886
No 95
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=26.57 E-value=52 Score=25.51 Aligned_cols=45 Identities=13% Similarity=0.152 Sum_probs=26.6
Q ss_pred ccCccCCCCCCChhHHHHHHHHHHhhCC-----CCCcEEEEcCCCCCCcc
Q psy12348 132 LHDWQDFSIPGGPDVLVNFCHLVRNSTP-----TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 132 ~~~W~~~~~p~~~~~l~~~i~~v~~~~~-----~~~pivVhc~~G~gRsg 176 (178)
+.+|...|.++....+--++..+.+... ...+-|+.=.+|+||..
T Consensus 22 ~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa 71 (270)
T PF07942_consen 22 VRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLA 71 (270)
T ss_pred HhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHH
Confidence 4589988887655544445555554432 23344444479999953
No 96
>COG3246 Uncharacterized conserved protein [Function unknown]
Probab=26.37 E-value=2.3e+02 Score=22.36 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=34.6
Q ss_pred EEEEEEeccCccCCCCCC-ChhHHHHHHHHHHhhCCCCCcEEEEcCCCCC
Q psy12348 125 LEVKHFHLHDWQDFSIPG-GPDVLVNFCHLVRNSTPTSQLSVVHCRHLFT 173 (178)
Q Consensus 125 ~~v~~~~~~~W~~~~~p~-~~~~l~~~i~~v~~~~~~~~pivVhc~~G~g 173 (178)
-.+-|+|.. |+.|-|. +++.+-.++..++. ..+.+++.-+.|.|
T Consensus 43 Aai~HlHvR--p~dG~pt~d~~~yr~~l~rIr~---~~~D~vin~ttg~g 87 (298)
T COG3246 43 AAILHLHVR--PEDGRPTLDPEAYREVLERIRA---AVGDAVINLTTGEG 87 (298)
T ss_pred cceEEEEec--CCCCCcccCHHHHHHHHHHHHc---cCCCeEEEeccccc
Confidence 367788887 8888885 67777788888888 55888888888775
No 97
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=26.23 E-value=1.3e+02 Score=25.30 Aligned_cols=39 Identities=8% Similarity=0.021 Sum_probs=24.7
Q ss_pred CCCCCCChhHHHHHHHHHHhhCCCCCcEEEEcC--CCCCCcccC
Q psy12348 137 DFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCR--HLFTQLKEF 178 (178)
Q Consensus 137 ~~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~--~G~gRsg~F 178 (178)
+.|.-..+..++.-++.+-+ ..+=++|..- .|+||+|.|
T Consensus 234 egG~~v~p~~fl~~l~~~~~---~~gillI~DEVQtG~GRTG~~ 274 (447)
T COG0160 234 EGGIIVPPKGFLKALRKLCR---EHGILLIADEVQTGFGRTGKM 274 (447)
T ss_pred CCCCcCCCHHHHHHHHHHHH---HcCCEEEEeccccCCCccccc
Confidence 34444446666666666555 3455666554 899999975
No 98
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=25.09 E-value=56 Score=20.34 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=10.9
Q ss_pred CCCcEEEEcCCCC
Q psy12348 160 TSQLSVVHCRHLF 172 (178)
Q Consensus 160 ~~~pivVhc~~G~ 172 (178)
...+|+++|..|.
T Consensus 53 ~~~~iv~~c~~g~ 65 (99)
T cd01527 53 GANAIIFHCRSGM 65 (99)
T ss_pred CCCcEEEEeCCCc
Confidence 5689999999884
No 99
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=24.71 E-value=1.8e+02 Score=18.02 Aligned_cols=28 Identities=18% Similarity=0.151 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHhhCCCCCcEEEEcCCC
Q psy12348 144 PDVLVNFCHLVRNSTPTSQLSVVHCRHL 171 (178)
Q Consensus 144 ~~~l~~~i~~v~~~~~~~~pivVhc~~G 171 (178)
...+...+...........+||++|..|
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~iv~yc~~~ 77 (113)
T PF00581_consen 50 EDKLDEFLKELGKKIDKDKDIVFYCSSG 77 (113)
T ss_dssp HHHHHHHHHHHTHGSTTTSEEEEEESSS
T ss_pred ccccccccccccccccccccceeeeecc
Confidence 3444444455444343667899999555
No 100
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=24.64 E-value=55 Score=20.29 Aligned_cols=15 Identities=13% Similarity=0.120 Sum_probs=11.5
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
...+|+|+|..| +|+
T Consensus 55 ~~~~ivv~c~~g-~~s 69 (96)
T cd01529 55 RATRYVLTCDGS-LLA 69 (96)
T ss_pred CCCCEEEEeCCh-HHH
Confidence 568999999876 454
No 101
>KOG2798|consensus
Probab=24.09 E-value=72 Score=25.55 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=29.2
Q ss_pred ccCccCCCCCCChhHHHHHHHHHHhhCC-----CCCcEEEEcCCCCCCcc
Q psy12348 132 LHDWQDFSIPGGPDVLVNFCHLVRNSTP-----TSQLSVVHCRHLFTQLK 176 (178)
Q Consensus 132 ~~~W~~~~~p~~~~~l~~~i~~v~~~~~-----~~~pivVhc~~G~gRsg 176 (178)
+..|...+.++.-...--++..++.... ...+.++.=.+|+||-.
T Consensus 116 ~RdwssE~~~ERd~~ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa 165 (369)
T KOG2798|consen 116 CRDWSSEGQRERDQLYKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLA 165 (369)
T ss_pred HHHhhhccchhhhhhhhhHHHHHHhhCCCccccccCceEEecCCCchhHH
Confidence 4589988888765544445555555443 34566666689999953
No 102
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=24.04 E-value=1.3e+02 Score=20.40 Aligned_cols=16 Identities=13% Similarity=-0.134 Sum_probs=11.6
Q ss_pred CCCcEE--EEcCCCCCCc
Q psy12348 160 TSQLSV--VHCRHLFTQL 175 (178)
Q Consensus 160 ~~~piv--Vhc~~G~gRs 175 (178)
+..|+| .|...|+|.+
T Consensus 50 p~KpLVlSfHG~tGtGKn 67 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKN 67 (127)
T ss_pred CCCCEEEEeecCCCCcHH
Confidence 677866 6777887754
No 103
>KOG0462|consensus
Probab=24.00 E-value=55 Score=28.24 Aligned_cols=31 Identities=32% Similarity=0.445 Sum_probs=26.9
Q ss_pred EecCCCCCcHHHHhhHhhhCCccEEEEcccce
Q psy12348 43 AAQGPKADTVADFWTMVLQHQVVKIVMLCSFV 74 (178)
Q Consensus 43 ~~Q~P~~~t~~~FW~mv~~~~v~~IV~l~~~~ 74 (178)
+.|+|++.|+..||.. ++.+-..|.+|+..+
T Consensus 158 A~qGvqAQT~anf~lA-fe~~L~iIpVlNKID 188 (650)
T KOG0462|consen 158 ASQGVQAQTVANFYLA-FEAGLAIIPVLNKID 188 (650)
T ss_pred cCcCchHHHHHHHHHH-HHcCCeEEEeeeccC
Confidence 3899999999999977 888999999998754
No 104
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=23.95 E-value=98 Score=24.20 Aligned_cols=24 Identities=21% Similarity=0.043 Sum_probs=17.2
Q ss_pred HHHHHHHHhhCCCCCcEEEEcCCCCC
Q psy12348 148 VNFCHLVRNSTPTSQLSVVHCRHLFT 173 (178)
Q Consensus 148 ~~~i~~v~~~~~~~~pivVhc~~G~g 173 (178)
+++++.+++.- +-|+|.|.+.|+.
T Consensus 192 ~~~L~~I~~~~--~iPLVLHGgSG~~ 215 (285)
T PRK07709 192 FAEMEQVRDFT--GVPLVLHGGTGIP 215 (285)
T ss_pred HHHHHHHHHHH--CCCEEEeCCCCCC
Confidence 45556665533 6899999998876
No 105
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=23.91 E-value=1.6e+02 Score=22.26 Aligned_cols=35 Identities=6% Similarity=0.094 Sum_probs=26.5
Q ss_pred CCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCC
Q psy12348 140 IPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQ 174 (178)
Q Consensus 140 ~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gR 174 (178)
.|.+.+.++.+++..++......|++..|-.+.|+
T Consensus 155 m~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG~~G~ 189 (231)
T COG0710 155 MPQSKEDVLDLLEATREFKEAEKPVITISMGKTGK 189 (231)
T ss_pred cCCCHHHHHHHHHHHHhccccCCCEEEEecCCCCc
Confidence 46778888888888876443578999998877665
No 106
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=23.32 E-value=90 Score=20.05 Aligned_cols=30 Identities=13% Similarity=0.176 Sum_probs=17.5
Q ss_pred ChhHHHHHHHHHHhhCCCCCcEEEEcCCCCCCc
Q psy12348 143 GPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQL 175 (178)
Q Consensus 143 ~~~~l~~~i~~v~~~~~~~~pivVhc~~G~gRs 175 (178)
+++.+..++..... ....+|+++|..|. ||
T Consensus 62 ~~~~~~~~~~~~~~--~~~~~iv~yc~~g~-~s 91 (118)
T cd01449 62 SPEELRALFAALGI--TPDKPVIVYCGSGV-TA 91 (118)
T ss_pred CHHHHHHHHHHcCC--CCCCCEEEECCcHH-HH
Confidence 34455444443321 14679999998874 44
No 107
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=23.13 E-value=1.2e+02 Score=24.03 Aligned_cols=15 Identities=13% Similarity=0.186 Sum_probs=12.1
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
.+.||+|+|..|+ ||
T Consensus 170 kdk~IvvyC~~G~-Rs 184 (314)
T PRK00142 170 KDKKVVMYCTGGI-RC 184 (314)
T ss_pred CcCeEEEECCCCc-HH
Confidence 5689999999885 54
No 108
>KOG3020|consensus
Probab=23.02 E-value=94 Score=24.48 Aligned_cols=27 Identities=15% Similarity=0.135 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhCCCCC-cEEEEcCCCC
Q psy12348 146 VLVNFCHLVRNSTPTSQ-LSVVHCRHLF 172 (178)
Q Consensus 146 ~l~~~i~~v~~~~~~~~-pivVhc~~G~ 172 (178)
.--++++.+++...... +++|||-.|-
T Consensus 158 a~~d~~eIl~~~~~~~~~~vvvHsFtGs 185 (296)
T KOG3020|consen 158 AHEDLLEILKRFLPECHKKVVVHSFTGS 185 (296)
T ss_pred hhHHHHHHHHHhccccCCceEEEeccCC
Confidence 44445555554433233 7999998873
No 109
>KOG3059|consensus
Probab=22.77 E-value=32 Score=26.81 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=23.8
Q ss_pred ccCCCCcccccceeecccCCcceEEecCCCCCcHHHHhhHhhh
Q psy12348 19 AQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQ 61 (178)
Q Consensus 19 ~~~~~~dyinAs~i~g~~~~~~~I~~Q~P~~~t~~~FW~mv~~ 61 (178)
.|+-+++|+|++|+++.+.+ ......|||+.+.+
T Consensus 19 kQ~YPDNYtDesFle~lr~n---------i~i~~~~~~~~v~~ 52 (292)
T KOG3059|consen 19 KQEYPDNYTDESFLEELRMN---------INISIYDLWSAVAE 52 (292)
T ss_pred cCCCCCcccCHHHHHHHHhh---------hhhhhhHHHHHHHh
Confidence 57789999999999976532 12356677776654
No 110
>PF05265 DUF723: Protein of unknown function (DUF723); InterPro: IPR007929 This family contains several uncharacterised proteins from Neisseria meningitidis. These proteins may have a role in DNA binding.
Probab=22.66 E-value=1.4e+02 Score=17.42 Aligned_cols=19 Identities=16% Similarity=0.246 Sum_probs=13.8
Q ss_pred CCCcEEEEcC-CCCCCcccC
Q psy12348 160 TSQLSVVHCR-HLFTQLKEF 178 (178)
Q Consensus 160 ~~~pivVhc~-~G~gRsg~F 178 (178)
...|+.|+|- +|.-+.+.|
T Consensus 27 ~~~PvtI~CP~HG~~~~s~~ 46 (60)
T PF05265_consen 27 VATPVTIRCPKHGNFTCSTF 46 (60)
T ss_pred CCCceEEECCCCCcEEeccH
Confidence 5689999997 776665543
No 111
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=22.47 E-value=1.1e+02 Score=23.94 Aligned_cols=24 Identities=17% Similarity=-0.046 Sum_probs=17.4
Q ss_pred HHHHHHHHhhCCCCCcEEEEcCCCCC
Q psy12348 148 VNFCHLVRNSTPTSQLSVVHCRHLFT 173 (178)
Q Consensus 148 ~~~i~~v~~~~~~~~pivVhc~~G~g 173 (178)
++.++.+++.. +-|+|.|...|+.
T Consensus 192 ~~~L~~I~~~~--~vPLVLHGgSG~~ 215 (286)
T PRK08610 192 FKEMEEIGLST--GLPLVLHGGTGIP 215 (286)
T ss_pred HHHHHHHHHHH--CCCEEEeCCCCCC
Confidence 55666666543 5799999988876
No 112
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=22.25 E-value=32 Score=25.74 Aligned_cols=16 Identities=6% Similarity=0.111 Sum_probs=10.6
Q ss_pred CCCcEEEEcCCCCCCc
Q psy12348 160 TSQLSVVHCRHLFTQL 175 (178)
Q Consensus 160 ~~~pivVhc~~G~gRs 175 (178)
......+=|.||+||-
T Consensus 54 ~~~~~alDcGAGIGRV 69 (218)
T PF05891_consen 54 PKFNRALDCGAGIGRV 69 (218)
T ss_dssp ---SEEEEET-TTTHH
T ss_pred CCcceEEecccccchh
Confidence 3466889999999994
No 113
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=22.22 E-value=1.4e+02 Score=17.81 Aligned_cols=13 Identities=31% Similarity=0.307 Sum_probs=10.2
Q ss_pred CCCcEEEEcCCCC
Q psy12348 160 TSQLSVVHCRHLF 172 (178)
Q Consensus 160 ~~~pivVhc~~G~ 172 (178)
...+|+|+|..|.
T Consensus 55 ~~~~iv~~c~~g~ 67 (100)
T smart00450 55 KDKPVVVYCRSGN 67 (100)
T ss_pred CCCeEEEEeCCCc
Confidence 6789999996553
No 114
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=21.65 E-value=1.3e+02 Score=23.57 Aligned_cols=24 Identities=8% Similarity=0.079 Sum_probs=17.7
Q ss_pred HHHHHHHHhhCCCCCcEEEEcCCCCC
Q psy12348 148 VNFCHLVRNSTPTSQLSVVHCRHLFT 173 (178)
Q Consensus 148 ~~~i~~v~~~~~~~~pivVhc~~G~g 173 (178)
++.++.+++.. .-|+|+|...|+.
T Consensus 188 ~~~l~~I~~~~--~vPLVlHGgSG~~ 211 (283)
T PRK07998 188 IPLLKRIAEVS--PVPLVIHGGSGIP 211 (283)
T ss_pred HHHHHHHHhhC--CCCEEEeCCCCCC
Confidence 46666666643 6899999888875
No 115
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=21.59 E-value=75 Score=24.63 Aligned_cols=23 Identities=9% Similarity=0.187 Sum_probs=15.8
Q ss_pred ChhHHHHHHHHHHhhCCCCCcEEEEc
Q psy12348 143 GPDVLVNFCHLVRNSTPTSQLSVVHC 168 (178)
Q Consensus 143 ~~~~l~~~i~~v~~~~~~~~pivVhc 168 (178)
+.+.++..++.+++ -.+|++||.
T Consensus 246 dl~~Li~~l~~~K~---~~gPvllHV 268 (270)
T PF13292_consen 246 DLEELIEVLENAKD---IDGPVLLHV 268 (270)
T ss_dssp -HHHHHHHHHHHCC---SSSEEEEEE
T ss_pred CHHHHHHHHHHHhc---CCCCEEEEE
Confidence 45566666666655 679999995
No 116
>PRK09499 sifB secreted effector protein SifB; Provisional
Probab=21.15 E-value=54 Score=25.21 Aligned_cols=15 Identities=20% Similarity=0.355 Sum_probs=13.6
Q ss_pred CCcHHHHhhHhhhCC
Q psy12348 49 ADTVADFWTMVLQHQ 63 (178)
Q Consensus 49 ~~t~~~FW~mv~~~~ 63 (178)
.+|.+.||+.+||.-
T Consensus 19 ~~T~esww~~LWEki 33 (316)
T PRK09499 19 AISQRSFFTLLWEKI 33 (316)
T ss_pred cchHHHHHHHHHHHH
Confidence 889999999999873
No 117
>PRK10878 hypothetical protein; Provisional
Probab=21.12 E-value=84 Score=19.05 Aligned_cols=32 Identities=13% Similarity=0.226 Sum_probs=19.8
Q ss_pred cCccCC-CCCCChhHHHHHHHHHHhhCCCCCcEE
Q psy12348 133 HDWQDF-SIPGGPDVLVNFCHLVRNSTPTSQLSV 165 (178)
Q Consensus 133 ~~W~~~-~~p~~~~~l~~~i~~v~~~~~~~~piv 165 (178)
..|--. ..|++ ..+-.++..++......|||-
T Consensus 39 ~~W~~g~~~p~d-~~l~~iV~~Ir~~~~~~~~~~ 71 (72)
T PRK10878 39 FNWLMNHGKPAD-AELERMVRLIQTRNRERGPVA 71 (72)
T ss_pred HHHHhCCCCCCC-HHHHHHHHHHHHhcCCCCCCC
Confidence 356533 44543 457778888887665667753
No 118
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=21.01 E-value=77 Score=19.58 Aligned_cols=12 Identities=8% Similarity=-0.186 Sum_probs=10.2
Q ss_pred CCcEEEEcCCCC
Q psy12348 161 SQLSVVHCRHLF 172 (178)
Q Consensus 161 ~~pivVhc~~G~ 172 (178)
+.+|+++|..|.
T Consensus 56 ~~~iv~~c~~G~ 67 (95)
T cd01534 56 GARIVLADDDGV 67 (95)
T ss_pred CCeEEEECCCCC
Confidence 578999999884
No 119
>PF11834 DUF3354: Domain of unknown function (DUF3354); InterPro: IPR021789 Potassium channels take part in important processes of higher plants, including opening and closing of stomatal pores and leaf movement. Inward rectifying potassium (K(+)in) channels play an important role in turgor regulation and ion uptake in higher plants. All of them comprise, from their N-terminal to their C-terminal ends: a short hydrophilic region, a hydrophobic region structurally analogous and partially homologous to the transmembrane domain of voltage-gated animal channels from the Shaker superfamily, a putative cyclic nucleotide-binding domain, and a conserved C-terminal KHA domain. Between these last two regions, some of them (AKT1, AKT2 and SKT1) contain an ankyrin-repeat domain with six repeats homologous to those of human erythrocyte ankyrin. This entry represents the KHA domain which is unique to plant K(+)in channels. The KHA domain contains two high-homology blocks enriched for hydrophobic and acidic residues, respectively. The KHA domain is essential for interaction of plant K(+)in channels. The KHA domain mediates tetramerization and/or stabilisation of the heteromers [, , ].
Probab=20.88 E-value=2e+02 Score=17.19 Aligned_cols=47 Identities=15% Similarity=-0.018 Sum_probs=27.1
Q ss_pred EEEEEEeccCccC----CCCCCChhHHHHHHHHHHhhCCCCCcEEEEcCCCC
Q psy12348 125 LEVKHFHLHDWQD----FSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRHLF 172 (178)
Q Consensus 125 ~~v~~~~~~~W~~----~~~p~~~~~l~~~i~~v~~~~~~~~pivVhc~~G~ 172 (178)
++|+.+.+..|.. ..+-.-|+++-+|++...+... ..+..|-..+|+
T Consensus 2 ~RVtI~~~~~~~~~~~~GKvi~lP~SleeLl~ia~~kfg-~~~~~v~~~dga 52 (69)
T PF11834_consen 2 KRVTIFPNHPPEKGRRAGKVIWLPDSLEELLKIASEKFG-FSATKVLNEDGA 52 (69)
T ss_pred cEEEEecCCCCcccCcCCEEEEcCccHHHHHHHHHHHhC-CCceEEEcCCCC
Confidence 4677777777754 2111223556666666666553 347777777774
No 120
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=20.83 E-value=1.3e+02 Score=20.68 Aligned_cols=12 Identities=17% Similarity=0.346 Sum_probs=10.3
Q ss_pred CCCcEEEEcCCC
Q psy12348 160 TSQLSVVHCRHL 171 (178)
Q Consensus 160 ~~~pivVhc~~G 171 (178)
...|+||+|..|
T Consensus 48 ~~~~vVv~c~~g 59 (145)
T cd01535 48 AAERYVLTCGSS 59 (145)
T ss_pred CCCCEEEEeCCC
Confidence 568999999986
No 121
>PRK10425 DNase TatD; Provisional
Probab=20.55 E-value=1.2e+02 Score=23.16 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEcCC
Q psy12348 146 VLVNFCHLVRNSTPTSQLSVVHCRH 170 (178)
Q Consensus 146 ~l~~~i~~v~~~~~~~~pivVhc~~ 170 (178)
.|...++...+ .+.|++|||.+
T Consensus 109 vF~~ql~lA~~---~~~Pv~iH~r~ 130 (258)
T PRK10425 109 AFVAQLAIAAE---LNMPVFMHCRD 130 (258)
T ss_pred HHHHHHHHHHH---hCCCeEEEEeC
Confidence 44444444444 45788888774
No 122
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=20.45 E-value=74 Score=20.37 Aligned_cols=13 Identities=31% Similarity=0.255 Sum_probs=11.1
Q ss_pred CCCcEEEEcCCCC
Q psy12348 160 TSQLSVVHCRHLF 172 (178)
Q Consensus 160 ~~~pivVhc~~G~ 172 (178)
...||+|.|..|.
T Consensus 63 ~~~~vvvyc~~g~ 75 (110)
T cd01521 63 KEKLFVVYCDGPG 75 (110)
T ss_pred CCCeEEEEECCCC
Confidence 5789999999875
No 123
>KOG0333|consensus
Probab=20.08 E-value=1.3e+02 Score=26.08 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=27.8
Q ss_pred cCccCCCCCCChhHHHHHHHHHHhhCC-------------CCCcEEEEcCCCCCCcccC
Q psy12348 133 HDWQDFSIPGGPDVLVNFCHLVRNSTP-------------TSQLSVVHCRHLFTQLKEF 178 (178)
Q Consensus 133 ~~W~~~~~p~~~~~l~~~i~~v~~~~~-------------~~~pivVhc~~G~gRsg~F 178 (178)
.+|.+.+.| ..++.++..+.-... ...||.|. .+|.|.+.+|
T Consensus 245 rnwEE~~~P---~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igva-ETgsGktaaf 299 (673)
T KOG0333|consen 245 RNWEESGFP---LELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVA-ETGSGKTAAF 299 (673)
T ss_pred cChhhcCCC---HHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEE-eccCCccccc
Confidence 479988877 455666665543322 44566666 8899988776
No 124
>PRK10812 putative DNAse; Provisional
Probab=20.08 E-value=1.4e+02 Score=22.95 Aligned_cols=23 Identities=17% Similarity=0.277 Sum_probs=13.7
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEcCCC
Q psy12348 146 VLVNFCHLVRNSTPTSQLSVVHCRHL 171 (178)
Q Consensus 146 ~l~~~i~~v~~~~~~~~pivVhc~~G 171 (178)
.|...++..++ .+-|+++||.++
T Consensus 112 vf~~ql~lA~e---~~~Pv~iH~r~a 134 (265)
T PRK10812 112 SFRHHIQIGRE---LNKPVIVHTRDA 134 (265)
T ss_pred HHHHHHHHHHH---hCCCeEEEeeCc
Confidence 34444444444 568888888764
Done!