RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12348
(178 letters)
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC,
hydrolase; 1.54A {Homo sapiens}
Length = 287
Score = 147 bits (374), Expect = 2e-44
Identities = 38/142 (26%), Positives = 61/142 (42%), Gaps = 3/142 (2%)
Query: 29 DFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDR 88
+ + +YIA QGP T A FW +V ++ IVML + E+GR KC +Y+PD
Sbjct: 76 NMEIPAANLVNKYIATQGPLPHTCAQFWQVVWDQKLSLIVMLTTLTERGRTKCHQYWPDP 135
Query: 89 VNEYFVFNNIRVGCTEQEVGSHHTCTHLRITR--DSEVLEVKHFHLHDWQDFSIPGGPDV 146
+ + C ++ + + +T E V H W D +P
Sbjct: 136 -PDVMNHGGFHIQCQSEDCTIAYVSREMLVTNTQTGEEHTVTHLQYVAWPDHGVPDDSSD 194
Query: 147 LVNFCHLVRNSTPTSQLSVVHC 168
+ F + VR+ S+ +VHC
Sbjct: 195 FLEFVNYVRSLRVDSEPVLVHC 216
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A
2qct_A* 2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 147 bits (374), Expect = 2e-44
Identities = 40/136 (29%), Positives = 63/136 (46%), Gaps = 1/136 (0%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G YIA QGP + T+ DFW M+ ++ V+ IVM C E G+ KCE+Y+ +
Sbjct: 92 GVYGPKAYIATQGPLSTTLLDFWRMIWEYSVLIIVMACMEYEMGKKKCERYWAEPGEMQL 151
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHL 153
F V C ++ S + L++ +SE + FH +W D +P D ++
Sbjct: 152 EFGPFSVSCEAEKRKSDYIIRTLKVKFNSETRTIYQFHYKNWPDHDVPSSIDPILELIWD 211
Query: 154 VRNSTPTSQL-SVVHC 168
VR + +HC
Sbjct: 212 VRCYQEDDSVPICIHC 227
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 146 bits (370), Expect = 8e-44
Identities = 46/136 (33%), Positives = 63/136 (46%), Gaps = 2/136 (1%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G ++ E+I QGP T DFW M + IVML EKGR KC++Y+P+
Sbjct: 108 GHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGREKCDQYWPND-TVPV 166
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHL 153
+ +I+V + T + R SE ++HFH W DF +P P LV F
Sbjct: 167 FYGDIKVQILNDSHYADWVMTEFMLCRGSEQRILRHFHFTTWPDFGVPNPPQTLVRFVRA 226
Query: 154 VRNSTPTSQLS-VVHC 168
R+ Q VVHC
Sbjct: 227 FRDRIGAEQRPIVVHC 242
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo
sapiens} SCOP: c.45.1.2
Length = 314
Score = 145 bits (369), Expect = 1e-43
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 6/141 (4%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNE-Y 92
+ YI QGP +T FW MV Q + +VML VEK VKC +Y+P E
Sbjct: 76 IEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESVKCAQYWPTDDQEML 135
Query: 93 FVFNNIRVGCTEQEVGSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
F V ++V S++T L++ E + HFH W DF +P P +NF
Sbjct: 136 FKETGFSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWPDFGVPESPASFLNF 195
Query: 151 CHLVRNSTPTSQLS---VVHC 168
VR S + V+HC
Sbjct: 196 LFKVRESGSLNPDHGPAVIHC 216
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 143 bits (364), Expect = 2e-43
Identities = 41/139 (29%), Positives = 69/139 (49%), Gaps = 6/139 (4%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+ + YIA+QGP T+ DFW M+ + + IVML E+G+ KC +Y+P +
Sbjct: 47 GYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPS--DGLV 104
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
+ +I V ++E +T L +T R+++ +++ FH H W + IP ++N
Sbjct: 105 SYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINII 164
Query: 152 HLVRNSTPTSQLS--VVHC 168
V+ S VHC
Sbjct: 165 AAVQKQQQQSGNHPITVHC 183
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 145 bits (367), Expect = 2e-43
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 3/138 (2%)
Query: 33 MGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEY 92
G YIA QGP T+ DFW +V + V I+M C +E GR +CE+Y+ E
Sbjct: 97 RGVDGSLAYIATQGPLPHTLLDFWRLVWEFGVKVILMACREIENGRKRCERYWAQE-QEP 155
Query: 93 FVFNNIRVGCT-EQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
+ E+ + L++T E V W D +P PD ++
Sbjct: 156 LQTGLFCITLIKEKWLNEDIMLRTLKVTFQKESRSVYQLQYMSWPDRGVPSSPDHMLAMV 215
Query: 152 HLVRNSTPTSQL-SVVHC 168
R + VHC
Sbjct: 216 EEARRLQGSGPEPLCVHC 233
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 145 bits (367), Expect = 3e-43
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 16/151 (10%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+ + YI QGP +T DFW MV + +V+ IVM F E GR KC +Y+P +
Sbjct: 90 GYKQKNAYIGTQGPLENTYRDFWLMVWEQKVLVIVMTTRFEEGGRRKCGQYWPLEKDSRI 149
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
F + V E +H+ T L I + + +V HF W D+ +P L++F
Sbjct: 150 RFGFLTVTNLGVENMNHYKKTTLEIHNTEERQKRQVTHFQFLSWPDYGVPSSAASLIDFL 209
Query: 152 HLVRNSTPTSQLS--------------VVHC 168
+VRN + + VVHC
Sbjct: 210 RVVRNQQSLAVSNMGARSKGQCPEPPIVVHC 240
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 144 bits (365), Expect = 4e-43
Identities = 45/141 (31%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G + EYI QGP T DFW MV + V IVM+ VEKGRVKC+ Y+P +
Sbjct: 86 GNNFRREYIVTQGPLPGTKDDFWKMVWEQNVHNIVMVTQCVEKGRVKCDHYWPAD-QDSL 144
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITRD---SEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
+ ++ + + V T +I + ++HFH W D +P L+ F
Sbjct: 145 YYGDLILQMLSESVLPEWTIREFKICGEEQLDAHRLIRHFHYTVWPDHGVPETTQSLIQF 204
Query: 151 CHLVRNSTPTSQLS---VVHC 168
VR+ S + VVHC
Sbjct: 205 VRTVRDYINRSPGAGPTVVHC 225
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 143 bits (364), Expect = 6e-43
Identities = 50/138 (36%), Positives = 71/138 (51%), Gaps = 4/138 (2%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+++ EYIA QGP +T DFW MVLQ + IVML EK RVKC+ Y+P E
Sbjct: 87 GYNSPQEYIATQGPLPETRNDFWKMVLQQKSQIIVMLTQCNEKRRVKCDHYWPF-TEEPI 145
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGG--PDVLVNFC 151
+ +I V +E C H RI E+ +V HF+ W D +P + ++ F
Sbjct: 146 AYGDITVEMISEEEQDDWACRHFRINYADEMQDVMHFNYTAWPDHGVPTANAAESILQFV 205
Query: 152 HLVRNSTPTSQL-SVVHC 168
H+VR S+ ++HC
Sbjct: 206 HMVRQQATKSKGPMIIHC 223
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 143 bits (363), Expect = 8e-43
Identities = 45/142 (31%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
+ YI QGP +T FW MV + + +VML +EKG +KC +Y+P + +
Sbjct: 80 MEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM 139
Query: 94 VFN--NIRVGCTEQEVGSHHTCTHLRITR--DSEVLEVKHFHLHDWQDFSIPGGPDVLVN 149
+F N+++ +++ S++T L + E E+ HFH W DF +P P +N
Sbjct: 140 IFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLN 199
Query: 150 FCHLVRNSTPTSQLS---VVHC 168
F VR S S VVHC
Sbjct: 200 FLFKVRESGSLSPEHGPVVVHC 221
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 142 bits (360), Expect = 3e-42
Identities = 37/138 (26%), Positives = 63/138 (45%), Gaps = 4/138 (2%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNE-Y 92
E YIA QGP TV DFW M+ + + I M+ VE ++KC++Y+P+ + +
Sbjct: 110 VGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGKTT 169
Query: 93 FVFNNIRVGCTEQEVGSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
V N +R+ + + + + EV + H + W D P PD L+ F
Sbjct: 170 MVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTF 229
Query: 151 CHLVRNSTPTSQLSVVHC 168
+R+ + + + HC
Sbjct: 230 ISYMRHIHRSGPI-ITHC 246
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 140 bits (356), Expect = 7e-42
Identities = 47/138 (34%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+ YIA QGP +TV DFW M+ Q IVM+ + VE GRVKC +Y+PD Y
Sbjct: 85 GYHRPRHYIATQGPMQETVKDFWRMIWQENSASIVMVTNLVEVGRVKCVRYWPDDTEVY- 143
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITRD--SEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
+I+V E E + + + + E+ E++ FH W D +P L+ F
Sbjct: 144 --GDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFHFTSWPDHGVPCYATGLLGFV 201
Query: 152 HLVRNSTPTSQ-LSVVHC 168
V+ P VVHC
Sbjct: 202 RQVKFLNPPEAGPIVVHC 219
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 142 bits (359), Expect = 8e-42
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 7/140 (5%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+ ++ ++IA QGP +T+ DFW MV + V IVML VE+GR KCE+Y+P + +
Sbjct: 107 GYHSKKDFIATQGPLPNTLKDFWRMVWEKNVYAIVMLTKCVEQGRTKCEEYWPSKQAQ-- 164
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITR--DSEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
+ +I V T + V T + SE ++ FH W D +P D+L+NF
Sbjct: 165 DYGDITVAMTSEVVLPEWTIRDFVVKNMQSSESHPLRQFHFTSWPDHGVPDTTDLLINFR 224
Query: 152 HLVRNSTPTSQLS---VVHC 168
+LVR+ +VHC
Sbjct: 225 YLVRDYMKQIPPESPILVHC 244
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 141 bits (357), Expect = 1e-41
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
+ YIA QG +TV DFW MV Q IVM VE+G+ KC KY+PD
Sbjct: 107 NSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDE-YALK 165
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITR---DSEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
+ +RV ++ +T L++++ + V +H W D +P P +++F
Sbjct: 166 EYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDF 225
Query: 151 CHLVRNSTPTSQLS---VVHC 168
V + + + VVHC
Sbjct: 226 LEEVHHKQESIMDAGPVVVHC 246
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo
sapiens}
Length = 320
Score = 140 bits (354), Expect = 2e-41
Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 4/143 (2%)
Query: 29 DFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDR 88
+ S +YIA QGP T DFW M + +VML + VE+GRVKC +Y+P+
Sbjct: 103 NMEIPSSSIINQYIACQGPLPHTCTDFWQMTWEQGSSMVVMLTTQVERGRVKCHQYWPEP 162
Query: 89 VNEYFVFNNIRVGCTEQEVGSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPDV 146
+ +V C +E + + + + +E + W D +P
Sbjct: 163 -TGSSSYGCYQVTCHSEEGNTAYIFRKMTLFNQEKNESRPLTQIQYIAWPDHGVPDDSSD 221
Query: 147 LVNFCHLVRNSTPTSQL-SVVHC 168
++F VRN + VVHC
Sbjct: 222 FLDFVCHVRNKRAGKEEPVVVHC 244
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 145 bits (367), Expect = 3e-41
Identities = 40/139 (28%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
GF +YIAAQGP+ +TV DFW M+ + + IVM+ E R KC +Y+P
Sbjct: 92 GFKEPRKYIAAQGPRDETVDDFWRMIWEQKATVIVMVTRCEEGNRNKCAEYWPSMEEGTR 151
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITR---DSEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
F ++ V + + + L I + EV H W D +P P +L+
Sbjct: 152 AFGDVVVKINQHKRCPDYIIQKLNIVNKKEKATGREVTHIQFTSWPDHGVPEDPHLLLKL 211
Query: 151 CHLVRNSTPTSQLS-VVHC 168
V + VVH
Sbjct: 212 RRRVNAFSNFFSGPIVVHS 230
Score = 141 bits (356), Expect = 1e-39
Identities = 36/150 (24%), Positives = 61/150 (40%), Gaps = 16/150 (10%)
Query: 33 MGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEY 92
M + IAAQGP +T+ DFW M+ Q +V IVML + C +Y+ + Y
Sbjct: 401 MSYWKPEVMIAAQGPLKETIGDFWQMIFQRKVKVIVMLTELKHGDQEICAQYWGEGKQTY 460
Query: 93 FVFNNIRVGCTEQEVGSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
+I V + + S +T + + + V + +W +P P L++
Sbjct: 461 ---GDIEVDLKDTDKSSTYTLRVFELRHSKRKDSRTVYQYQYTNWSVEQLPAEPKELISM 517
Query: 151 CHLVRNSTPTSQLS-----------VVHCR 169
+V+ P S ++HCR
Sbjct: 518 IQVVKQKLPQKNSSEGNKHHKSTPLLIHCR 547
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 139 bits (352), Expect = 3e-41
Identities = 41/132 (31%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 40 EYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIR 99
+IA QGP +TV DFW MV Q IVM+ EK KC Y+P++ Y +
Sbjct: 102 AFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKNE-KCVLYWPEKRGIY---GKVE 157
Query: 100 VGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP 159
V T ++T +L + + S VKH+ W D P L+ V
Sbjct: 158 VLVTGVTECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQLMLDVEEDRL 217
Query: 160 TSQLS---VVHC 168
S+ VVHC
Sbjct: 218 ASEGRGPVVVHC 229
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 138 bits (351), Expect = 6e-41
Identities = 32/147 (21%), Positives = 54/147 (36%), Gaps = 12/147 (8%)
Query: 33 MGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEY 92
+ ++A Q P V DF + + +V +VML E G +K E+Y+P+ +
Sbjct: 84 IDLDLPHTFVACQAPVPQGVPDFLETLSEKKVDLVVMLTKLREGGVLKAERYWPEEEEDS 143
Query: 93 FVFN---NIRVGCTEQEVGSHHTCTHLRITR--------DSEVLEVKHFHLHDWQDFSIP 141
F + + T S+ L I R + V W D +P
Sbjct: 144 LSFPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVPGKPMHRVLQVQYVGWPDHGVP 203
Query: 142 GGPDVLVNFCHLVRNSTPTSQLSVVHC 168
+++N TS + +VHC
Sbjct: 204 ESAASFDELLSVIKNCVTTSPI-LVHC 229
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB:
1gwz_A
Length = 284
Score = 138 bits (349), Expect = 7e-41
Identities = 37/151 (24%), Positives = 61/151 (40%), Gaps = 7/151 (4%)
Query: 24 ADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEK 83
A+ + + N YIA+QG TV DFW M Q IVM VEKGR KC
Sbjct: 62 ANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVP 121
Query: 84 YFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITR---DSEVLEVKHFHLHDWQDFSI 140
Y+P+ + V + + + L+++ + E+ H+ W D +
Sbjct: 122 YWPEV-GMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 180
Query: 141 PGGPDVLVNFCHLVRNSTPTSQLS---VVHC 168
P P +++F + + + +VH
Sbjct: 181 PSEPGGVLSFLDQINQRQESLPHAGPIIVHS 211
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 138 bits (350), Expect = 8e-41
Identities = 43/142 (30%), Positives = 66/142 (46%), Gaps = 9/142 (6%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+ + ++IAAQGPK +TV DFW M+ + IVM+ + E+ KC +Y+PD+
Sbjct: 93 GYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPDQGCW-- 150
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITR------DSEVLEVKHFHLHDWQDFSIPGGPDVL 147
+ N+RV + V +T I + + FH W DF +P P +
Sbjct: 151 TYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTPIGM 210
Query: 148 VNFCHLVRNSTPTSQ-LSVVHC 168
+ F V+ P VVHC
Sbjct: 211 LKFLKKVKACNPQYAGAIVVHC 232
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A
2nv5_A
Length = 575
Score = 142 bits (361), Expect = 1e-40
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+ + YIA QGP +T+ DFW MV + + +VM+ EK RVKC++Y+P R E
Sbjct: 81 GYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKCDQYWPARGTE-- 138
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITR--DSEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
I+V + + +T + + SE E++ F W D +P P ++ F
Sbjct: 139 TCGLIQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHGVPEYPTPILAFL 198
Query: 152 HLVRNSTPTSQL-SVVHC 168
V+ P VVHC
Sbjct: 199 RRVKACNPLDAGPMVVHC 216
Score = 139 bits (353), Expect = 2e-39
Identities = 37/142 (26%), Positives = 59/142 (41%), Gaps = 7/142 (4%)
Query: 33 MGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEY 92
G+ + YIA QGP A++ DFW M+ +H IVML E GR KC +Y+P
Sbjct: 369 DGYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPA--ERS 426
Query: 93 FVFNNIRVGCTEQEVGSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
+ V + + ++T RD + ++ F DW + +P + ++F
Sbjct: 427 ARYQYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDF 486
Query: 151 CHLVRNSTPTSQLS---VVHCR 169
V + VHC
Sbjct: 487 IGQVHKTKEQFGQDGPITVHCS 508
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP,
hydrolase; 1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A
2hvl_A 2qdp_A 2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A*
3d42_A* 2a3k_A
Length = 309
Score = 137 bits (347), Expect = 2e-40
Identities = 44/132 (33%), Positives = 56/132 (42%), Gaps = 7/132 (5%)
Query: 40 EYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIR 99
YIA QGP +TV+DFW MV Q +V IVML E G+ KC Y+P Y +
Sbjct: 113 VYIATQGPMPNTVSDFWEMVWQEEVSLIVMLTQLRE-GKEKCVHYWPTEEETY---GPFQ 168
Query: 100 VGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP 159
+ + + +T L I E VKH W D P L+ V S
Sbjct: 169 IRIQDMKECPEYTVRQLTIQYQEERRSVKHILFSAWPDHQTPESAGPLLRLVAEVEESPE 228
Query: 160 TSQLS---VVHC 168
T+ VVHC
Sbjct: 229 TAAHPGPIVVHC 240
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 137 bits (347), Expect = 2e-40
Identities = 37/145 (25%), Positives = 55/145 (37%), Gaps = 6/145 (4%)
Query: 28 ADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPD 87
A YIA QGP + T+ADFW MV + IVML VE G +C++Y+PD
Sbjct: 89 ASPIIEHDPRMPAYIATQGPLSHTIADFWQMVWESGCTVIVMLTPLVEDGVKQCDRYWPD 148
Query: 88 RVNEYFVFNNIRVGCTEQEVGSHH-TCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGP 144
+++ V + + + + E + FH W P
Sbjct: 149 EGAS--LYHVYEVNLVSEHIWCEDFLVRSFYLKNVQTQETRTLTQFHFLSWPAEGTPAST 206
Query: 145 DVLVNFCHLVRNSTPTSQL-SVVHC 168
L++F V +VHC
Sbjct: 207 RPLLDFRRKVNKCYRGRSCPIIVHC 231
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase,
STEP, hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB:
2bij_A 2bv5_A*
Length = 305
Score = 136 bits (345), Expect = 5e-40
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 8/133 (6%)
Query: 40 EYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIR 99
YIA QGP TVADFW MV Q IVM+ + +E+ KC +Y+P+ Y + +
Sbjct: 110 VYIATQGPIVSTVADFWRMVWQEHTPIIVMITN-IEEMNEKCTEYWPEEQVAY---DGVE 165
Query: 100 VGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP 159
+ + + + + +E +KH+ W D P L++ V +
Sbjct: 166 ITVQKVIHTEDYRLRLISLKSGTEERGLKHYWFTSWPDQKTPDRAPPLLHLVREVEEAAQ 225
Query: 160 TSQLS----VVHC 168
+VH
Sbjct: 226 QEGPHCAPIIVHS 238
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 136 bits (345), Expect = 6e-40
Identities = 36/152 (23%), Positives = 58/152 (38%), Gaps = 17/152 (11%)
Query: 34 GFSNEAE--YIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNE 91
AE YIA QGP T DFW MV + V I M+ + E GR K +Y+P ++
Sbjct: 108 VVVGGAEWHYIATQGPLPHTCHDFWQMVWEQGVNVIAMVTAEEEGGRTKSHRYWPKLGSK 167
Query: 92 Y--FVFNNIRVGCTEQEVGSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPDVL 147
+ + +V + + T L++ + V H DW D P
Sbjct: 168 HSSATYGKFKVTTKFRTDSVCYATTGLKVKHLLSGQERTVWHLQYTDWPDHGCPEDVQGF 227
Query: 148 VNFCHLVRNSTPTSQLS-----------VVHC 168
+++ +++ + VVHC
Sbjct: 228 LSYLEEIQSVRRHTNSMLEGTKNRHPPIVVHC 259
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 141 bits (357), Expect = 7e-40
Identities = 46/141 (32%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+ + ++IAAQGPK +TV DFW MV + + IVML + E+ KC +Y+PD+
Sbjct: 92 GYKEKNKFIAAQGPKQETVNDFWRMVWEQKSATIVMLTNLKERKEEKCHQYWPDQGCW-- 149
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITR-----DSEVLEVKHFHLHDWQDFSIPGGPDVLV 148
+ NIRV + V +T I V H W DF +P P ++
Sbjct: 150 TYGNIRVCVEDCVVLVDYTIRKFCIQPQLPDGCKAPRLVSQLHFTSWPDFGVPFTPIGML 209
Query: 149 NFCHLVRNSTPTSQL-SVVHC 168
F V+ P VVHC
Sbjct: 210 KFLKKVKTLNPVHAGPIVVHC 230
Score = 138 bits (350), Expect = 6e-39
Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 11/146 (7%)
Query: 33 MGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEY 92
G+ + +IA QGP A TV DFW M+ + + IVML E+ + KC +Y+P
Sbjct: 383 DGYRQKDYFIATQGPLAHTVEDFWRMIWEWKSHTIVMLTEVQEREQDKCYQYWPT--EGS 440
Query: 93 FVFNNIRVGCTEQEVGSHHTCTHLRIT-------RDSEVLEVKHFHLHDWQDFSIPGGPD 145
I + + + +T + +V V+ FH H W + IP
Sbjct: 441 VTHGEITIEIKNDTLSEAISIRDFLVTLNQPQARQGEQVRVVRQFHFHGWPEIGIPAEGK 500
Query: 146 VLVNFCHLVRNSTPTSQLS--VVHCR 169
+++ V+ + VHC
Sbjct: 501 GMIDLIAAVQKQQQQTGNHPITVHCS 526
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 135 bits (343), Expect = 1e-39
Identities = 39/149 (26%), Positives = 60/149 (40%), Gaps = 16/149 (10%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G++ YIA QGP T DFW M+ + IVM+ + VEKGR KC++Y+P +E
Sbjct: 107 GYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE-- 164
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITR-------------DSEVLEVKHFHLHDWQDFSI 140
+ NI V ++ + +T I V +H W D +
Sbjct: 165 EYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMGV 224
Query: 141 PGGPDVLVNFCHLVRNSTPTSQ-LSVVHC 168
P ++ F + +VHC
Sbjct: 225 PEYALPVLTFVRRSSAARMPETGPVLVHC 253
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment);
PTPRG, R-PTP gamma, protein tyrosine phosphatase gamma,
D3S1 HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 136 bits (343), Expect = 7e-38
Identities = 40/150 (26%), Positives = 62/150 (41%), Gaps = 16/150 (10%)
Query: 33 MGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEY 92
G++ YIA QGP T DFW M+ + IVM+ + VEKGR KC++Y+P +E
Sbjct: 88 DGYNKAKAYIATQGPLKSTFEDFWRMIWEQNTGIIVMITNLVEKGRRKCDQYWPTENSE- 146
Query: 93 FVFNNIRVGCTEQEVGSHHTCTHLRITR-------------DSEVLEVKHFHLHDWQDFS 139
+ NI V ++ + +T I V +H W D
Sbjct: 147 -EYGNIIVTLKSTKIHACYTVRRFSIRNTKVKKGQKGNPKGRQNERVVIQYHYTQWPDMG 205
Query: 140 IPGGPDVLVNFCHLVRNS-TPTSQLSVVHC 168
+P ++ F + P + +VHC
Sbjct: 206 VPEYALPVLTFVRRSSAARMPETGPVLVHC 235
Score = 125 bits (315), Expect = 5e-34
Identities = 33/145 (22%), Positives = 49/145 (33%), Gaps = 12/145 (8%)
Query: 33 MGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEY 92
MG+ E+I Q P T DFW M+ H IVML + Y+P R E
Sbjct: 387 MGYYRSNEFIITQHPLPHTTKDFWRMIWDHNAQIIVMLPDNQSLAEDEF-VYWPSR-EES 444
Query: 93 FVFNNIRVGCTEQEV-----GSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPD 145
V ++ + +D VLEV+HF W + P
Sbjct: 445 MNCEAFTVTLISKDRLCLSNEEQIIIHDFILEATQDDYVLEVRHFQCPKWPNPDAP--IS 502
Query: 146 VLVNFCHLVRNSTPTSQLS-VVHCR 169
++++ T +VH
Sbjct: 503 STFELINVIKEEALTRDGPTIVHDE 527
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 134 bits (340), Expect = 8e-38
Identities = 41/141 (29%), Positives = 64/141 (45%), Gaps = 7/141 (4%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
+ YIA QG +TV DFW MV Q IVM VE+G+ KC KY+PD
Sbjct: 320 NSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDE-YALK 378
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITR---DSEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
+ +RV ++ +T L++++ + V +H W D +P P +++F
Sbjct: 379 EYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDF 438
Query: 151 CHLVRNSTPTSQLS---VVHC 168
V + + + VVHC
Sbjct: 439 LEEVHHKQESIMDAGPVVVHC 459
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 132 bits (334), Expect = 6e-37
Identities = 39/151 (25%), Positives = 63/151 (41%), Gaps = 7/151 (4%)
Query: 24 ADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEK 83
A+ + + N YIA+QG TV DFW M Q IVM VEKGR KC
Sbjct: 304 ANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVP 363
Query: 84 YFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITR---DSEVLEVKHFHLHDWQDFSI 140
Y+P+ V + V + + + L+++ + E+ H+ W D +
Sbjct: 364 YWPE-VGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGV 422
Query: 141 PGGPDVLVNFCHLVRNSTPTSQLS---VVHC 168
P P +++F + + + +VHC
Sbjct: 423 PSEPGGVLSFLDQINQRQESLPHAGPIIVHC 453
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 133 bits (335), Expect = 7e-37
Identities = 40/160 (25%), Positives = 65/160 (40%), Gaps = 12/160 (7%)
Query: 15 EYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFV 74
+YI A+ + + N YIA+QG TV DFW M Q IVM V
Sbjct: 300 DYI-----NANYIKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREV 354
Query: 75 EKGRVKCEKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITR---DSEVLEVKHFH 131
EKGR KC Y+P+ V + V + + + L+++ + E+ H+
Sbjct: 355 EKGRNKCVPYWPE-VGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQ 413
Query: 132 LHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLS---VVHC 168
W D +P P +++F + + + +VH
Sbjct: 414 YLSWPDHGVPSEPGGVLSFLDQINQRQESLPHAGPIIVHS 453
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 121 bits (304), Expect = 2e-33
Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 18/146 (12%)
Query: 37 NEAEYIAAQGPK--ADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFV 94
+ +A PK D + M+L+ + +V+L S + + YF
Sbjct: 180 GKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFRGSYT---- 235
Query: 95 FNNIRVGCTEQEVGSHH---TCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
F + + S +++++ + + H+ +W D D L
Sbjct: 236 FGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLA 295
Query: 152 HLVRNSTPTSQLS---------VVHC 168
V+NS ++HC
Sbjct: 296 DRVKNSNQNGAPGRSSSDKHLPMIHC 321
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A
{Yersinia enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A*
1ytn_A 1ytw_A 2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A*
1ypt_A* 3blt_A* 1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A*
1pa9_A* 1yts_A
Length = 306
Score = 117 bits (294), Expect = 2e-32
Identities = 20/153 (13%), Positives = 41/153 (26%), Gaps = 28/153 (18%)
Query: 40 EYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKC--EKYFPDRVNEYFVFNN 97
IA Q P + + M+ +++ + +L S E + YF + +
Sbjct: 93 RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGT----YGS 148
Query: 98 IRVGCTEQEVGSHHTCTHLRI------TRDSEVLEVKHFHLHDWQDFSIPGG--PDVLVN 149
I V + + + + V H+ +W D + L +
Sbjct: 149 ITVESKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALAS 208
Query: 150 FCHLVRNSTPTSQLS--------------VVHC 168
+ S V+H
Sbjct: 209 LVDQTAETKRNMYESKGSSAVADDSKLRPVIHS 241
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.0 bits (85), Expect = 0.002
Identities = 32/155 (20%), Positives = 55/155 (35%), Gaps = 38/155 (24%)
Query: 39 AEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPD-----RVNEYF 93
A IA D+ F+ V K + + F+ G V+C + +P+ + E
Sbjct: 280 AVAIAE----TDSWESFFV-----SVRKAITVLFFI--G-VRCYEAYPNTSLPPSILEDS 327
Query: 94 VFNN---------IRVGCTEQEVGSH--HTCTHLRITRDSEVLEVKHFHLHDWQD-FSIP 141
+ NN I T+++V + T +HL +V L + +
Sbjct: 328 LENNEGVPSPMLSIS-NLTQEQVQDYVNKTNSHLP--AGKQV----EISLVNGAKNLVVS 380
Query: 142 GGPDVLVNFCHLVRNSTPTSQLSVVHCRHLFTQLK 176
G P L +R + S L R F++ K
Sbjct: 381 GPPQSLYGLNLTLRKAKAPSGLDQ--SRIPFSERK 413
Score = 29.6 bits (66), Expect = 0.69
Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 22/83 (26%)
Query: 23 KADTVADFW---------TMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKI-----V 68
+ D W T GFS I P T+ F + +I
Sbjct: 1638 TSKAAQDVWNRADNHFKDTYGFS--ILDIVINNPVNLTIH-FGGEKGK----RIRENYSA 1690
Query: 69 MLCSFVEKGRVKCEKYFPDRVNE 91
M+ + G++K EK F + +NE
Sbjct: 1691 MIFETIVDGKLKTEKIFKE-INE 1712
Score = 26.9 bits (59), Expect = 5.4
Identities = 27/124 (21%), Positives = 44/124 (35%), Gaps = 42/124 (33%)
Query: 74 VEKGRVKC----------EKYFP---DRVNEY--FVFNNIRVGCTEQEVGSHHTCTHL-R 117
V +G + + YF D Y V + I+ S T + L R
Sbjct: 149 VGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKF--------SAETLSELIR 200
Query: 118 ITRDSEVLEVKHFHLHDW-QDFSIPGGPDVLVNFCHLVRNSTPTS-------QLS--VVH 167
T D+E + + ++ +W ++ S D L+ S P S QL+ VV
Sbjct: 201 TTLDAEKVFTQGLNILEWLENPSNTPDKDYLL--------SIPISCPLIGVIQLAHYVVT 252
Query: 168 CRHL 171
+ L
Sbjct: 253 AKLL 256
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 33.3 bits (76), Expect = 0.021
Identities = 9/81 (11%), Positives = 20/81 (24%), Gaps = 7/81 (8%)
Query: 91 EYFVFNNIR--VGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLV 148
+ ++ + E + ++ H+ D +P L
Sbjct: 22 LEWRKEGVKRVLVLPEDWEIEESWGDKDYYLSILKKNGLQPLHIP-IPDGGVPSDSQFLT 80
Query: 149 NFCHLVRNSTPTSQLSVVHCR 169
L+ +VHC
Sbjct: 81 IMKWLLSEKEGN----LVHCV 97
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase,
structural genomics, translation, NPPSFA; 2.42A {Aquifex
aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Length = 317
Score = 31.9 bits (73), Expect = 0.090
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 142 GGPD--VLVNFCHLVRNSTPTSQLSVVHCRH 170
GG D VL + ++N ++++ H H
Sbjct: 33 GGVDSVVLTDVLLKLKNYFSLKEVALAHFNH 63
>1nfp_A LUXF gene product; flavin mononucleotide, myristate, flavoprotein;
HET: FMN MYR; 1.60A {Photobacterium leiognathi} SCOP:
c.1.16.2
Length = 228
Score = 29.7 bits (66), Expect = 0.45
Identities = 10/72 (13%), Positives = 22/72 (30%)
Query: 62 HQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRD 121
H+++ V + + + + Y D ++ +I G+ TC H
Sbjct: 126 HRLMLFVNVNDNPTQAKAELSIYLEDYLSYTQAETSIDEIINSNAAGNFDTCLHHVAEMA 185
Query: 122 SEVLEVKHFHLH 133
+ F
Sbjct: 186 QGLNNKVDFLFC 197
>3ehm_A SUSD homolog; glycan binding, mucin O-glycan binding,
tetratrico-peptide repeat, sugar binding protein; 2.00A
{Bacteroides thetaiotaomicron} PDB: 3ehn_A*
Length = 532
Score = 29.5 bits (65), Expect = 0.64
Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 13/93 (13%)
Query: 7 QWGFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVK 66
+ G S A Y++ G + G N I PK D + + Q+ K
Sbjct: 378 EQGVSGVATYLSGTGKPTGLTGSNYKYGTYNHDLSIGNTSPKWDDYTGNLS-KQEEQLQK 436
Query: 67 IVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIR 99
I+ +KY N + R
Sbjct: 437 IIT------------QKYLALYPNAVEAWTEYR 457
>2img_A Dual specificity protein phosphatase 23; DUSP23, VHZ, LDP-3, dual
specicity protein phosphatase 23, DUS23_human, malate,
structural genomics, PSI; 1.93A {Homo sapiens}
Length = 151
Score = 27.7 bits (62), Expect = 1.6
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 127 VKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRH 170
+ L DF P PD + F +V + + VHC
Sbjct: 57 LTLHRLR-IPDFCPPA-PDQIDRFVQIVDEANARGEAVGVHCAL 98
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.9 bits (61), Expect = 2.3
Identities = 24/183 (13%), Positives = 41/183 (22%), Gaps = 50/183 (27%)
Query: 14 AEYIAAQGPK--------ADTVAD-----------FW-TMGFSNEAEYIAAQGPKADTVA 53
A+ + G D FW + N E + K
Sbjct: 150 AKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI 209
Query: 54 DFWTMVLQHQVVKIVMLCSFVEKG--RVKCEKYFP------DRVNEYFVFN--NIRVGCT 103
D I + ++ R+ K + V +N N+
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---- 265
Query: 104 EQEVGSHHTCTHLRITRDSEVLEV------KHFHLHDWQD-FSIPGGPDVLVNFCHLVRN 156
C L TR +V + H L + +L+ +
Sbjct: 266 ---------CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 157 STP 159
P
Sbjct: 317 DLP 319
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding,
DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A
{Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*
Length = 263
Score = 26.0 bits (57), Expect = 8.0
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 129 HFHLHDWQDFSIPGGPDVLVNFCH 152
H D +DFS+ +
Sbjct: 96 VLHHGDMRDFSLGRRFSAVTCMFS 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.441
Gapped
Lambda K H
0.267 0.0743 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,839,647
Number of extensions: 158506
Number of successful extensions: 581
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 54
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (24.6 bits)