RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12348
(178 letters)
>d1g4us2 c.45.1.2 (S:297-539) SptP tyrosine phosphatase, catalytic
domain {Salmonella typhimurium [TaxId: 90371]}
Length = 243
Score = 110 bits (276), Expect = 4e-31
Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 12/147 (8%)
Query: 35 FSNEAEYIAAQGPK--ADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEY 92
F + +A PK D + M+L+ + +V+L S + + YF +
Sbjct: 42 FDGKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFRGS-YTF 100
Query: 93 FVFNNIRVGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCH 152
+ + G +++++ + + H+ +W D D L
Sbjct: 101 GEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLAD 160
Query: 153 LVRNS---------TPTSQLSVVHCRH 170
V+NS + L ++HC
Sbjct: 161 RVKNSNQNGAPGRSSSDKHLPMIHCLG 187
>d1lara1 c.45.1.2 (A:1307-1623) RPTP Lar {Human (Homo sapiens)
[TaxId: 9606]}
Length = 317
Score = 101 bits (252), Expect = 7e-27
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 4/150 (2%)
Query: 22 PKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKC 81
P +D + + G+ + YIA QGP +T+ DFW MV + + +VM+ EK RVKC
Sbjct: 69 PGSDYINANYIDGYRKQNAYIATQGPLPETMGDFWRMVWEQRTATVVMMTRLEEKSRVKC 128
Query: 82 EKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRD--SEVLEVKHFHLHDWQDFS 139
++Y+P R E I+V + + +T + + SE E++ F W D
Sbjct: 129 DQYWPARGTETCGL--IQVTLLDTVELATYTVRTFALHKSGSSEKRELRQFQFMAWPDHG 186
Query: 140 IPGGPDVLVNFCHLVRNSTPTSQLSVVHCR 169
+P P ++ F V+ P +V
Sbjct: 187 VPEYPTPILAFLRRVKACNPLDAGPMVVHC 216
>d2f71a1 c.45.1.2 (A:2-298) Tyrosine phosphatase {Human (Homo
sapiens), 1B [TaxId: 9606]}
Length = 297
Score = 99.8 bits (248), Expect = 2e-26
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 4/144 (2%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
+ YI QGP +T FW MV + + +VML +EKG +KC +Y+P + +
Sbjct: 73 MEEAQRSYILTQGPLPNTCGHFWEMVWEQKSRGVVMLNRVMEKGSLKCAQYWPQKEEKEM 132
Query: 94 VFN--NIRVGCTEQEVGSHHTCTHLRITR--DSEVLEVKHFHLHDWQDFSIPGGPDVLVN 149
+F N+++ +++ S++T L + E E+ HFH W DF +P P +N
Sbjct: 133 IFEDTNLKLTLISEDIKSYYTVRQLELENLTTQETREILHFHYTTWPDFGVPESPASFLN 192
Query: 150 FCHLVRNSTPTSQLSVVHCRHLFT 173
F VR S S H
Sbjct: 193 FLFKVRESGSLSPEHGPVVVHCSA 216
>d1rpma_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
mu [TaxId: 9606]}
Length = 278
Score = 97.6 bits (242), Expect = 1e-25
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Query: 31 WTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVN 90
+ G+ YIA QGP +T+ DFW MV I+M+ + VE GRVKC KY+PD
Sbjct: 80 YIDGYHRPNHYIATQGPMQETIYDFWRMVWHENTASIIMVTNLVEVGRVKCCKYWPDDTE 139
Query: 91 EYFVFNNIRVGCTEQEVGSHHTCTHLRITR--DSEVLEVKHFHLHDWQDFSIPGGPDVLV 148
Y +I+V E E+ + + + + E+ E++ FH W D +P L+
Sbjct: 140 IY---KDIKVTLIETELLAEYVIRTFAVEKRGVHEIREIRQFHFTGWPDHGVPYHATGLL 196
Query: 149 NFCHLVRNST-PTSQLSVVHCRH 170
F V++ + P++ VVHC
Sbjct: 197 GFVRQVKSKSPPSAGPLVVHCSA 219
>d1l8ka_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
T-cell [TaxId: 9606]}
Length = 273
Score = 91.0 bits (225), Expect = 2e-23
Identities = 50/165 (30%), Positives = 70/165 (42%), Gaps = 6/165 (3%)
Query: 20 QGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRV 79
Q + D + + YI QGP +T FW MV Q + +VML VEK V
Sbjct: 58 QNAENDYINASLVDIEEAQRSYILTQGPLPNTCCHFWLMVWQQKTKAVVMLNRIVEKESV 117
Query: 80 KCEKYFPDRVNE-YFVFNNIRVGCTEQEVGSHHTCTHLRI--TRDSEVLEVKHFHLHDWQ 136
KC +Y+P E F V ++V S++T L++ E + HFH W
Sbjct: 118 KCAQYWPTDDQEMLFKETGFSVKLLSEDVKSYYTVHLLQLENINSGETRTISHFHYTTWP 177
Query: 137 DFSIPGGPDVLVNFCHLVRNS---TPTSQLSVVHCRHLFTQLKEF 178
DF +P P +NF VR S P +V+HC + F
Sbjct: 178 DFGVPESPASFLNFLFKVRESGSLNPDHGPAVIHCSAGIGRSGTF 222
>d1p15a_ c.45.1.2 (A:) Protein-tyrosine phosphatase alpha {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 245
Score = 90.6 bits (224), Expect = 3e-23
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 6/141 (4%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+ + YIA+QGP T+ DFW M+ + + IVML E+G+ KC +Y+P +
Sbjct: 47 GYRQKDSYIASQGPLLHTIEDFWRMIWEWKSCSIVMLTELEERGQEKCAQYWPS--DGLV 104
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRIT--RDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
+ +I V ++E +T L +T R+++ +++ FH H W + IP ++N
Sbjct: 105 SYGDITVELKKEEECESYTVRDLLVTNTRENKSRQIRQFHFHGWPEVGIPSDGKGMINII 164
Query: 152 HLVR--NSTPTSQLSVVHCRH 170
V+ + VHC
Sbjct: 165 AAVQKQQQQSGNHPITVHCSA 185
>d2shpa1 c.45.1.2 (A:219-525) Tyrosine phosphatase {Human (Homo
sapiens), shp-2 [TaxId: 9606]}
Length = 307
Score = 91.5 bits (226), Expect = 3e-23
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
+ YIA QG +TV DFW MV Q IVM VE+G+ KC KY+PD
Sbjct: 102 NSKPKKSYIATQGCLQNTVNDFWRMVFQENSRVIVMTTKEVERGKSKCVKYWPDE-YALK 160
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITR---DSEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
+ +RV ++ +T L++++ + V +H W D +P P +++F
Sbjct: 161 EYGVMRVRNVKESAAHDYTLRELKLSKVGQGNTERTVWQYHFRTWPDHGVPSDPGGVLDF 220
Query: 151 CHLVRNS---TPTSQLSVVHCRH 170
V + + VVHC
Sbjct: 221 LEEVHHKQESIMDAGPVVVHCSA 243
>d1yfoa_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 288
Score = 89.9 bits (222), Expect = 9e-23
Identities = 42/147 (28%), Positives = 68/147 (46%), Gaps = 9/147 (6%)
Query: 31 WTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVN 90
+ G+ + ++IAAQGPK +TV DFW M+ + IVM+ + E+ KC +Y+PD
Sbjct: 84 FINGYQEKNKFIAAQGPKEETVNDFWRMIWEQNTATIVMVTNLKERKECKCAQYWPD--Q 141
Query: 91 EYFVFNNIRVGCTEQEVGSHHTCTHLRITR------DSEVLEVKHFHLHDWQDFSIPGGP 144
+ + N+RV + V +T I + + FH W DF +P P
Sbjct: 142 GCWTYGNVRVSVEDVTVLVDYTVRKFCIQQVGDVTNRKPQRLITQFHFTSWPDFGVPFTP 201
Query: 145 DVLVNFCHLVRNSTPTSQLSVV-HCRH 170
++ F V+ P ++V HC
Sbjct: 202 IGMLKFLKKVKACNPQYAGAIVVHCSA 228
>d1fpra_ c.45.1.2 (A:) Tyrosine phosphatase {Human (Homo sapiens),
shp-1 [TaxId: 9606]}
Length = 284
Score = 87.2 bits (215), Expect = 9e-22
Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 27 VADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFP 86
+ + N YIA+QG TV DFW M Q IVM VEKGR KC Y+P
Sbjct: 65 IKNQLLGPDENAKTYIASQGCLEATVNDFWQMAWQENSRVIVMTTREVEKGRNKCVPYWP 124
Query: 87 DRVNEYFVFNNIRVGCTEQEVGSHHTCTHLRITRDS---EVLEVKHFHLHDWQDFSIPGG 143
+ V + V + + + L+++ + E+ H+ W D +P
Sbjct: 125 E-VGMQRAYGPYSVTNCGEHDTTEYKLRTLQVSPLDNGDLIREIWHYQYLSWPDHGVPSE 183
Query: 144 PDVLVNFCHLVR---NSTPTSQLSVVHCRH 170
P +++F + S P + +VH
Sbjct: 184 PGGVLSFLDQINQRQESLPHAGPIIVHSSA 213
>d1jlna_ c.45.1.2 (A:) Tyrosine phosphatase {Mouse (Mus musculus),
ptp-sl/br7 [TaxId: 10090]}
Length = 297
Score = 86.8 bits (214), Expect = 1e-21
Identities = 41/141 (29%), Positives = 58/141 (41%), Gaps = 5/141 (3%)
Query: 31 WTMGFSN-EAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRV 89
+ G+S E +IA QGP +TV DFW MV Q IVM+ EK KC Y+P++
Sbjct: 92 YIRGYSGKEKAFIATQGPMINTVNDFWQMVWQEDSPVIVMITKLKEKNE-KCVLYWPEKR 150
Query: 90 NEYFVFNNIRVGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVN 149
Y + V T ++T +L + + S VKH+ W D P L+
Sbjct: 151 GIY---GKVEVLVTGVTECDNYTIRNLVLKQGSHTQHVKHYWYTSWPDHKTPDSAQPLLQ 207
Query: 150 FCHLVRNSTPTSQLSVVHCRH 170
V S+ H
Sbjct: 208 LMLDVEEDRLASEGRGPVVVH 228
>d1lyva_ c.45.1.2 (A:) Protein-tyrosine phosphatase YopH, catalytic
domain {Yersinia enterocolitica [TaxId: 630]}
Length = 283
Score = 86.7 bits (214), Expect = 1e-21
Identities = 16/124 (12%), Positives = 37/124 (29%), Gaps = 6/124 (4%)
Query: 40 EYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIR 99
IA Q P + + M+ +++ + +L S E + R + + +
Sbjct: 70 RTIACQYPLQSQLESHFRMLAENRTPVLAVLASSSEIANQRFGMPDYFRQSGTYGSITVE 129
Query: 100 VGCTEQEVGSHHTCTHLRIT----RDSEVLEVKHFHLHDWQDFSIP--GGPDVLVNFCHL 153
T+Q + + + V H+ +W D + L +
Sbjct: 130 SKMTQQVGLGDGIMADMYTLTIREAGQKTISVPVVHVGNWPDQTAVSSEVTKALASLVDQ 189
Query: 154 VRNS 157
+
Sbjct: 190 TAET 193
>d1lara2 c.45.1.2 (A:1628-1876) RPTP Lar {Human (Homo sapiens)
[TaxId: 9606]}
Length = 249
Score = 85.2 bits (210), Expect = 3e-21
Identities = 33/137 (24%), Positives = 55/137 (40%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNEYF 93
G+ + YIA QGP A++ DFW M+ +H IVML E GR KC +Y+P + +
Sbjct: 49 GYRQQKAYIATQGPLAESTEDFWRMLWEHNSTIIVMLTKLREMGREKCHQYWPAERSARY 108
Query: 94 VFNNIRVGCTEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHL 153
+ + + RD + ++ F DW + +P + ++F
Sbjct: 109 QYFVVDPMAEYNMPQYILREFKVTDARDGQSRTIRQFQFTDWPEQGVPKTGEGFIDFIGQ 168
Query: 154 VRNSTPTSQLSVVHCRH 170
V + H
Sbjct: 169 VHKTKEQFGQDGPITVH 185
>d1wcha_ c.45.1.2 (A:) Tyrosine-protein phosphatase, non-receptor
type 13 (PTPL1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 308
Score = 78.3 bits (192), Expect = 2e-18
Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 4/140 (2%)
Query: 34 GFSNEAEYIAAQGPKADTVADFWTMVLQHQVVKIVMLCSFVEKGRVKCEKYFPDRVNE-Y 92
E YIA QGP TV DFW M+ + + I M+ VE ++KC++Y+P+ + +
Sbjct: 103 VGKEEFVYIACQGPLPTTVGDFWQMIWEQKSTVIAMMTQEVEGEKIKCQRYWPNILGKTT 162
Query: 93 FVFNNIRVGCTEQEVGSHHTCTHLRI--TRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNF 150
V N +R+ + + + + EV + H + W D P PD L+ F
Sbjct: 163 MVSNRLRLALVRMQQLKGFVVRAMTLEDIQTREVRHISHLNFTAWPDHDTPSQPDDLLTF 222
Query: 151 CHLVRNSTPTSQLSVVHCRH 170
+R+ + + + HC
Sbjct: 223 ISYMRHIHRSGPI-ITHCSA 241
>d2pt0a1 c.45.1.4 (A:34-346) Myo-inositol hexaphosphate
phosphohydrolase (phytase) PhyA {Selenomonas ruminantium
[TaxId: 971]}
Length = 313
Score = 52.0 bits (124), Expect = 5e-09
Identities = 20/175 (11%), Positives = 38/175 (21%), Gaps = 30/175 (17%)
Query: 1 MAYFNSQWGFSNEAEYIAAQGPKADTVADFW--TMGFSNEAEYIAAQGPKADTVADFWTM 58
+ F N A + + D + G+ + W
Sbjct: 72 SSAFTPA-QLKNVAAKLREKTAGPIYDVDLRQESHGYLDGIPVS-------------WYG 117
Query: 59 VLQHQVV-KIVMLCSFVEKGRVKCEKYFPDRVNEYFVFNNIRVGCTEQEVGSHHTCTHLR 117
+ K E+ R+ + + + +
Sbjct: 118 ERDWANLGKSQHEALADERHRLHAALHKTVYIAPL---------GKHKLPEGGEVRRVQK 168
Query: 118 ITRDSEVLEVKHFHLHD--WQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCRH 170
+ + EV E D P P+ + F R + L HC
Sbjct: 169 VQTEQEVAEAAGMRYFRIAATDHVWP-TPENIDRFLAFYRTLPQDAWL-HFHCEA 221
>d1rxda_ c.45.1.1 (A:) Protein tyrosine phosphatase type IVa
{Human (Homo sapiens), pr-1 [TaxId: 9606]}
Length = 152
Score = 37.4 bits (86), Expect = 2e-04
Identities = 10/54 (18%), Positives = 20/54 (37%), Gaps = 7/54 (12%)
Query: 41 YIAAQGPKADTVADFWTMVLQHQVVKIVMLCS-------FVEKGRVKCEKYFPD 87
++ P T+ F + ++ V IV +C ++G + F D
Sbjct: 11 FLITHNPTNATLNKFIEELKKYGVTTIVRVCEATYDTTLVEKEGIHVLDWPFDD 64
Score = 27.3 bits (60), Expect = 0.75
Identities = 3/18 (16%), Positives = 6/18 (33%)
Query: 16 YIAAQGPKADTVADFWTM 33
++ P T+ F
Sbjct: 11 FLITHNPTNATLNKFIEE 28
>d1cxya_ d.120.1.1 (A:) Cytochrome b558 {Ectothiorhodospira
vacuolata [TaxId: 1054]}
Length = 81
Score = 23.7 bits (51), Expect = 6.5
Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 103 TEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
T ++V HH+ + +V ++ + + PG +++ +C
Sbjct: 6 TLEQVAEHHSPDDCWMAIHGKVYDLTPYVPNH------PGPAGMMLVWC 48
>d1xksa_ b.69.14.1 (A:) Nuclear pore complex protein Nup133 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 403
Score = 24.8 bits (54), Expect = 8.0
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 4/80 (5%)
Query: 6 SQWGFSNEAEYIAAQGPKADTVADFWTMGFSNEAEYIAAQGPKADTVADFWTMVLQHQVV 65
S+W + +E A + + T + + L+
Sbjct: 221 SKWELDDSSEKHAYSWDINRALKENITDAIWGSESN----YEAIKEGVNIRYLDLKQNCD 276
Query: 66 KIVMLCSFVEKGRVKCEKYF 85
+V+L + C Y+
Sbjct: 277 GLVILAAAWHSADNPCLIYY 296
>d1mija_ a.4.1.1 (A:) Homeo-prospero domain of Prospero protein
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 152
Score = 24.0 bits (52), Expect = 8.4
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 116 LRITRDSEVLEVKHFHLHDWQDFSIP 141
L I DSE+ V + H + +P
Sbjct: 77 LLIAGDSELYRVLNLHYNRNNHIEVP 102
>d1kbia2 d.120.1.1 (A:1-97) Flavocytochrome b2, N-terminal domain
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 97
Score = 23.7 bits (51), Expect = 8.9
Identities = 10/49 (20%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 103 TEQEVGSHHTCTHLRITRDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFC 151
+ EV H+ + + V ++ F + PGG DV+
Sbjct: 12 SPAEVAKHNKPDDCWVVINGYVYDLTRFLPNH------PGGQDVIKFNA 54
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.136 0.441
Gapped
Lambda K H
0.267 0.0471 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 700,705
Number of extensions: 29892
Number of successful extensions: 140
Number of sequences better than 10.0: 1
Number of HSP's gapped: 131
Number of HSP's successfully gapped: 24
Length of query: 178
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 98
Effective length of database: 1,309,196
Effective search space: 128301208
Effective search space used: 128301208
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.7 bits)