Query psy12349
Match_columns 205
No_of_seqs 189 out of 1414
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 16:45:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02740 protein tyrosine phos 100.0 1.6E-35 3.5E-40 251.3 17.9 148 14-162 133-293 (298)
2 PHA02742 protein tyrosine phos 100.0 1E-33 2.2E-38 241.2 18.0 148 13-161 136-300 (303)
3 PHA02738 hypothetical protein; 100.0 6.7E-33 1.5E-37 237.6 17.7 150 13-163 133-300 (320)
4 PHA02746 protein tyrosine phos 100.0 6.6E-33 1.4E-37 238.0 17.2 149 13-162 155-319 (323)
5 PHA02747 protein tyrosine phos 100.0 2.2E-32 4.9E-37 233.7 17.8 149 14-163 138-305 (312)
6 KOG0790|consensus 100.0 6.1E-33 1.3E-37 238.5 11.1 147 14-161 368-525 (600)
7 KOG0792|consensus 100.0 2.1E-31 4.5E-36 247.4 17.0 151 15-166 983-1139(1144)
8 smart00194 PTPc Protein tyrosi 100.0 4.1E-30 8.9E-35 214.2 17.3 143 12-155 111-258 (258)
9 cd00047 PTPc Protein tyrosine 100.0 3.8E-29 8.2E-34 205.0 17.1 142 13-155 84-231 (231)
10 PF00102 Y_phosphatase: Protei 100.0 1.8E-28 4E-33 199.9 15.1 143 13-155 85-235 (235)
11 KOG4228|consensus 100.0 3.4E-29 7.4E-34 234.5 10.9 145 14-161 652-801 (1087)
12 KOG0791|consensus 100.0 1.1E-27 2.3E-32 202.8 15.1 149 13-162 208-359 (374)
13 PRK15375 pathogenicity island 99.9 4.9E-26 1.1E-30 200.8 18.1 136 20-159 383-532 (535)
14 KOG0793|consensus 99.9 2.2E-27 4.7E-32 212.9 8.0 142 15-157 848-995 (1004)
15 smart00404 PTPc_motif Protein 99.9 3.5E-25 7.5E-30 158.9 12.2 100 56-155 2-105 (105)
16 smart00012 PTPc_DSPc Protein t 99.9 3.5E-25 7.5E-30 158.9 12.2 100 56-155 2-105 (105)
17 COG5599 PTP2 Protein tyrosine 99.9 1.8E-23 3.8E-28 170.4 10.0 118 40-158 166-295 (302)
18 KOG4228|consensus 99.9 1.8E-23 3.9E-28 196.4 10.5 142 15-158 938-1086(1087)
19 KOG0789|consensus 99.9 2.3E-21 5E-26 171.1 16.0 151 14-164 211-374 (415)
20 PTZ00242 protein tyrosine phos 99.7 3.9E-16 8.6E-21 122.2 9.3 90 57-153 60-155 (166)
21 KOG1720|consensus 99.6 3.5E-15 7.7E-20 118.4 10.0 92 55-154 115-206 (225)
22 PTZ00393 protein tyrosine phos 99.6 1E-14 2.2E-19 119.0 11.1 91 54-153 136-226 (241)
23 cd00127 DSPc Dual specificity 99.4 8.7E-13 1.9E-17 99.4 9.8 89 54-150 48-136 (139)
24 COG2453 CDC14 Predicted protei 99.4 1E-11 2.2E-16 98.5 11.5 95 56-156 73-167 (180)
25 smart00195 DSPc Dual specifici 99.3 2.3E-11 5.1E-16 91.8 10.8 91 55-151 44-134 (138)
26 KOG2836|consensus 99.2 3.9E-11 8.4E-16 89.3 8.3 84 59-149 63-149 (173)
27 PF00782 DSPc: Dual specificit 99.2 5.2E-11 1.1E-15 89.2 8.1 72 72-151 58-129 (133)
28 PRK12361 hypothetical protein; 98.9 8.9E-09 1.9E-13 94.6 11.3 91 56-152 143-233 (547)
29 KOG1719|consensus 98.9 2.7E-08 5.8E-13 75.9 10.5 93 53-151 73-165 (183)
30 PF05706 CDKN3: Cyclin-depende 98.8 1.3E-08 2.8E-13 79.0 7.4 58 54-113 99-156 (168)
31 PF03162 Y_phosphatase2: Tyros 98.4 1.1E-06 2.3E-11 68.8 7.1 73 54-134 57-129 (164)
32 KOG2283|consensus 98.2 1.7E-06 3.8E-11 77.0 6.0 86 62-152 78-170 (434)
33 KOG1718|consensus 98.2 5.3E-06 1.2E-10 64.3 7.7 88 54-149 56-148 (198)
34 KOG1716|consensus 98.0 4.6E-05 9.9E-10 64.7 10.1 63 74-144 142-204 (285)
35 PF14566 PTPlike_phytase: Inos 97.9 2E-05 4.3E-10 60.6 5.6 50 63-114 99-148 (149)
36 COG5350 Predicted protein tyro 97.8 0.00013 2.9E-09 55.8 8.6 85 56-145 59-144 (172)
37 KOG1717|consensus 97.8 4.7E-05 1E-09 63.2 6.0 61 78-143 239-299 (343)
38 TIGR01244 conserved hypothetic 97.7 0.0002 4.3E-09 54.1 8.1 57 72-138 71-127 (135)
39 PF13350 Y_phosphatase3: Tyros 97.6 0.00013 2.9E-09 56.7 5.5 27 89-115 123-149 (164)
40 PLN02727 NAD kinase 97.0 0.0012 2.5E-08 63.5 6.0 56 54-113 309-364 (986)
41 PF04273 DUF442: Putative phos 97.0 0.0018 3.8E-08 47.3 5.2 36 72-111 71-106 (110)
42 COG2365 Protein tyrosine/serin 96.5 0.013 2.9E-07 48.7 8.1 42 73-116 121-162 (249)
43 KOG1572|consensus 96.2 0.065 1.4E-06 44.1 10.1 76 73-165 133-208 (249)
44 KOG4471|consensus 94.9 0.045 9.8E-07 50.3 4.9 59 89-147 373-469 (717)
45 KOG2386|consensus 94.7 0.15 3.2E-06 45.1 7.6 89 52-147 83-176 (393)
46 PF06602 Myotub-related: Myotu 90.9 0.48 1E-05 41.5 5.2 26 89-114 230-255 (353)
47 KOG1089|consensus 87.5 1 2.2E-05 41.7 4.9 58 89-146 343-439 (573)
48 COG3453 Uncharacterized protei 85.6 5.4 0.00012 29.6 6.9 28 72-102 72-99 (130)
49 PLN02160 thiosulfate sulfurtra 69.4 9.1 0.0002 28.6 4.3 18 89-107 80-97 (136)
50 cd01518 RHOD_YceA Member of th 65.7 6.3 0.00014 27.3 2.6 18 89-107 60-77 (101)
51 cd01448 TST_Repeat_1 Thiosulfa 64.4 14 0.0003 26.4 4.4 35 72-109 63-97 (122)
52 cd01523 RHOD_Lact_B Member of 64.1 8.2 0.00018 26.6 3.0 17 89-106 60-76 (100)
53 PF02061 Lambda_CIII: Lambda P 60.2 15 0.00033 21.8 3.0 25 58-82 2-26 (45)
54 cd01533 4RHOD_Repeat_2 Member 56.9 13 0.00029 26.1 3.0 16 89-105 65-80 (109)
55 PRK11493 sseA 3-mercaptopyruva 54.4 10 0.00022 31.9 2.3 16 89-104 230-245 (281)
56 cd05567 PTS_IIB_mannitol PTS_I 50.9 19 0.00042 24.5 2.9 17 92-109 2-18 (87)
57 PRK10678 moaE molybdopterin gu 49.8 78 0.0017 24.3 6.4 65 52-120 43-121 (150)
58 PF04179 Init_tRNA_PT: Initiat 49.7 37 0.00081 30.9 5.3 25 89-113 375-399 (451)
59 COG0607 PspE Rhodanese-related 48.5 19 0.00041 24.9 2.7 16 89-105 60-75 (110)
60 cd01530 Cdc25 Cdc25 phosphatas 46.3 21 0.00046 25.9 2.7 21 89-109 67-87 (121)
61 PF10727 Rossmann-like: Rossma 45.8 27 0.00059 25.9 3.3 28 75-102 80-108 (127)
62 TIGR03865 PQQ_CXXCW PQQ-depend 44.9 25 0.00054 27.0 3.1 18 89-106 115-132 (162)
63 cd01529 4RHOD_Repeats Member o 42.5 27 0.00057 23.8 2.6 17 89-106 55-71 (96)
64 TIGR02764 spore_ybaN_pdaB poly 42.4 70 0.0015 24.8 5.4 31 89-121 151-181 (191)
65 cd01522 RHOD_1 Member of the R 41.8 61 0.0013 23.1 4.6 18 89-107 63-80 (117)
66 cd01520 RHOD_YbbB Member of th 41.8 65 0.0014 23.3 4.8 20 89-108 85-104 (128)
67 cd01532 4RHOD_Repeat_1 Member 41.8 39 0.00085 22.9 3.4 21 89-109 49-69 (92)
68 PRK10287 thiosulfate:cyanide s 40.8 61 0.0013 22.9 4.4 18 89-107 59-76 (104)
69 cd01526 RHOD_ThiF Member of th 39.7 29 0.00063 24.9 2.6 17 89-106 71-87 (122)
70 cd01519 RHOD_HSP67B2 Member of 39.4 33 0.00071 23.6 2.7 17 89-106 65-81 (106)
71 PF02302 PTS_IIB: PTS system, 39.2 29 0.00063 23.3 2.4 13 92-104 1-13 (90)
72 cd01443 Cdc25_Acr2p Cdc25 enzy 38.8 28 0.0006 24.6 2.3 19 89-107 65-83 (113)
73 PLN02390 molybdopterin synthas 38.4 99 0.0021 22.4 5.1 65 53-121 20-98 (111)
74 PF14532 Sigma54_activ_2: Sigm 38.2 52 0.0011 24.1 3.8 34 74-107 5-38 (138)
75 cd00756 MoaE MoaE family. Memb 37.1 1.3E+02 0.0028 22.1 5.7 65 53-121 31-109 (124)
76 cd01447 Polysulfide_ST Polysul 37.0 34 0.00073 23.3 2.5 16 89-105 60-75 (103)
77 cd01449 TST_Repeat_2 Thiosulfa 36.7 51 0.0011 23.2 3.4 17 89-106 77-93 (118)
78 cd01525 RHOD_Kc Member of the 36.7 41 0.00089 23.1 2.9 19 90-109 65-83 (105)
79 PF00308 Bac_DnaA: Bacterial d 34.5 2.1E+02 0.0045 23.0 7.1 44 73-116 16-60 (219)
80 PF00158 Sigma54_activat: Sigm 34.3 1.2E+02 0.0026 23.4 5.4 37 73-109 5-41 (168)
81 cd01444 GlpE_ST GlpE sulfurtra 33.7 86 0.0019 20.9 4.1 16 89-105 55-70 (96)
82 cd01528 RHOD_2 Member of the R 33.6 54 0.0012 22.4 3.1 17 89-106 57-73 (101)
83 KOG0208|consensus 32.4 1.3E+02 0.0027 30.4 6.1 59 90-148 851-918 (1140)
84 COG0084 TatD Mg-dependent DNas 31.4 52 0.0011 27.5 3.1 27 72-101 110-136 (256)
85 cd07937 DRE_TIM_PC_TC_5S Pyruv 31.4 2.8E+02 0.0061 23.1 7.6 85 72-158 176-270 (275)
86 TIGR02981 phageshock_pspE phag 31.0 59 0.0013 22.9 2.9 18 89-107 57-74 (101)
87 cd01527 RHOD_YgaP Member of th 30.9 68 0.0015 21.7 3.2 13 89-101 53-65 (99)
88 cd01535 4RHOD_Repeat_4 Member 30.5 86 0.0019 23.5 3.9 12 89-100 48-59 (145)
89 PRK00142 putative rhodanese-re 29.6 1.2E+02 0.0025 26.2 5.0 32 74-106 153-186 (314)
90 cd01521 RHOD_PspE2 Member of t 29.3 71 0.0015 22.3 3.2 18 89-106 63-81 (110)
91 PRK08903 DnaA regulatory inact 29.1 1.6E+02 0.0036 23.3 5.6 40 74-113 26-65 (227)
92 TIGR03167 tRNA_sel_U_synt tRNA 29.0 1.2E+02 0.0025 26.2 4.9 35 76-110 60-94 (311)
93 COG2401 ABC-type ATPase fused 28.7 75 0.0016 29.1 3.7 41 77-117 231-274 (593)
94 PRK10310 PTS system galactitol 28.7 59 0.0013 22.6 2.5 17 92-109 4-20 (94)
95 COG0314 MoaE Molybdopterin con 27.7 2.3E+02 0.0049 21.7 5.8 65 53-121 44-122 (149)
96 COG2897 SseA Rhodanese-related 27.1 1.2E+02 0.0025 25.9 4.5 25 89-113 233-257 (285)
97 cd01531 Acr2p Eukaryotic arsen 27.0 67 0.0015 22.5 2.7 18 89-106 61-78 (113)
98 COG0794 GutQ Predicted sugar p 27.0 1.5E+02 0.0033 23.9 4.9 32 74-111 26-57 (202)
99 PRK01415 hypothetical protein; 25.8 1.9E+02 0.0041 24.1 5.4 18 89-107 170-187 (247)
100 PRK11784 tRNA 2-selenouridine 25.8 64 0.0014 28.2 2.8 21 89-109 87-107 (345)
101 COG4992 ArgD Ornithine/acetylo 25.5 1.4E+02 0.003 26.8 4.8 45 66-113 196-242 (404)
102 PRK00162 glpE thiosulfate sulf 25.3 1.1E+02 0.0024 21.2 3.5 13 89-101 57-69 (108)
103 PLN02723 3-mercaptopyruvate su 25.0 90 0.002 26.7 3.5 13 89-101 268-280 (320)
104 PF11416 Sed5p: Integral membr 23.8 13 0.00028 20.3 -1.2 9 183-191 4-12 (29)
105 cd07938 DRE_TIM_HMGL 3-hydroxy 23.7 4.4E+02 0.0095 22.0 8.1 62 72-134 176-253 (274)
106 PRK10318 hypothetical protein; 23.6 1.1E+02 0.0024 22.6 3.2 34 73-106 70-105 (121)
107 PRK07952 DNA replication prote 23.4 3.6E+02 0.0077 22.2 6.7 43 91-135 100-145 (244)
108 PF00682 HMGL-like: HMGL-like 23.4 1.3E+02 0.0027 24.2 4.0 44 72-116 164-209 (237)
109 cd07944 DRE_TIM_HOA_like 4-hyd 23.1 4E+02 0.0087 22.1 7.0 64 72-135 165-238 (266)
110 PRK10812 putative DNAse; Provi 22.9 70 0.0015 26.7 2.4 26 74-102 111-136 (265)
111 PF13476 AAA_23: AAA domain; P 21.6 98 0.0021 23.5 2.9 26 90-115 19-44 (202)
112 PRK14493 putative bifunctional 21.5 3.1E+02 0.0067 23.0 6.1 65 53-121 177-255 (274)
113 PF00581 Rhodanese: Rhodanese- 21.3 2.7E+02 0.0058 18.7 6.2 37 73-110 50-86 (113)
114 PF02391 MoaE: MoaE protein; 21.3 2.3E+02 0.005 20.5 4.6 61 55-119 41-115 (117)
115 TIGR00853 pts-lac PTS system, 21.3 2.9E+02 0.0063 19.1 5.6 65 91-160 4-74 (95)
116 cd03174 DRE_TIM_metallolyase D 21.2 4.4E+02 0.0096 21.2 7.0 64 71-135 172-245 (265)
117 KOG1529|consensus 21.2 89 0.0019 26.6 2.7 25 89-113 235-259 (286)
118 smart00450 RHOD Rhodanese Homo 21.2 2.3E+02 0.005 18.2 4.5 15 89-104 55-69 (100)
119 PRK11449 putative deoxyribonuc 20.8 1.2E+02 0.0026 25.1 3.4 26 73-101 113-138 (258)
120 KOG1530|consensus 20.7 99 0.0022 23.3 2.5 28 77-105 75-103 (136)
121 TIGR00167 cbbA ketose-bisphosp 20.6 3.3E+02 0.0071 23.2 6.0 29 77-107 195-223 (288)
122 PRK11608 pspF phage shock prot 20.5 2.4E+02 0.0052 24.2 5.3 39 73-111 12-50 (326)
123 PF01736 Polyoma_agno: Polyoma 20.3 2.3E+02 0.005 17.9 3.7 22 145-166 28-49 (62)
124 PF07745 Glyco_hydro_53: Glyco 20.3 2.7E+02 0.0057 24.3 5.5 44 63-107 140-186 (332)
125 PF00580 UvrD-helicase: UvrD/R 20.3 85 0.0018 25.8 2.4 22 89-110 12-33 (315)
No 1
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1.6e-35 Score=251.30 Aligned_cols=148 Identities=15% Similarity=0.253 Sum_probs=131.1
Q ss_pred ccCCCCC-CCCCcCcEEEEEeeeccCCCCeEEEEee---cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhC--
Q psy12349 14 TNNNNNN-KNSTDDTTRVPLLRDNSSDSDYINASFI---KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNST-- 87 (205)
Q Consensus 14 ~~~~~~~-~~~~~g~~~V~l~~~~~~~~~~~~r~l~---~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~-- 87 (205)
-||+... ....+|.|+|++++.. ...+|+++.|. ..+++|.|.||||++|||+++|.++..+++|+..|+...
T Consensus 133 ~YWP~~~~~~~~~g~f~V~~~~~~-~~~~~~~~~l~l~~~~~~~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~ 211 (298)
T PHA02740 133 QFWSLKEGCVITSDKFQIETLEII-IKPHFNLTLLSLTDKFGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCAD 211 (298)
T ss_pred cCCCCCCCCeEEECCEEEEEEEEE-ecCCEEEEEEEEEcCCCCcEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHH
Confidence 4888754 3467999999998655 56789988883 457799999999999999999999999999999887532
Q ss_pred -------CCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy12349 88 -------PTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASALESS 160 (205)
Q Consensus 88 -------~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i~~~ 160 (205)
...+||||||++|+||||+|||++++++++...+.+|+.++++.||+||+++|++.+||.|||.++++|+...
T Consensus 212 ~~~~~~~~~~~PIVVHCSaGvGRTGtFcaiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl~~~ 291 (298)
T PHA02740 212 LEKHKADGKIAPIIIDCIDGISSSAVFCVFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAYLKEK 291 (298)
T ss_pred HHHhhccCCCCCEEEECCCCCchhHHHHHHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHHHHHHHHHHHHh
Confidence 1458999999999999999999999999999999999999999999999999999999999999999999876
Q ss_pred CC
Q psy12349 161 DT 162 (205)
Q Consensus 161 ~~ 162 (205)
..
T Consensus 292 ~~ 293 (298)
T PHA02740 292 FD 293 (298)
T ss_pred hc
Confidence 43
No 2
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=1e-33 Score=241.16 Aligned_cols=148 Identities=22% Similarity=0.392 Sum_probs=131.1
Q ss_pred cccCCC-CCCCCCcCcEEEEEeeeccCCCCeEEEEee----cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhC
Q psy12349 13 TTNNNN-NNKNSTDDTTRVPLLRDNSSDSDYINASFI----KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNST 87 (205)
Q Consensus 13 ~~~~~~-~~~~~~~g~~~V~l~~~~~~~~~~~~r~l~----~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~ 87 (205)
.-||+. .+....+|.++|++.+.+ ...+|+++.|. ..++++.|.||||++|||+++|.++..+++|+..++...
T Consensus 136 ~~YWp~~~~~~~~~g~~~V~~~~~~-~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~ 214 (303)
T PHA02742 136 YPYWMPHERGKATHGEFKIKTKKIK-SFRNYAVTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREAD 214 (303)
T ss_pred cccCCCCCCCceEEEEEEEEEEEEE-EcCCEEEEEEEEEECCCCceEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHh
Confidence 358864 456678999999998766 45789998882 457899999999999999999999999999999998642
Q ss_pred C------------CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q psy12349 88 P------------TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIAS 155 (205)
Q Consensus 88 ~------------~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~ 155 (205)
. ..+||||||++|+||||+|||++++++++...+.+|+.++++.||+||+++|++.+||.|||.++++
T Consensus 215 ~~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~ 294 (303)
T PHA02742 215 LKADVDIKGENIVKEPPILVHCSAGLDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLI 294 (303)
T ss_pred hhccccccccccCCCCCeEEECCCCCchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHH
Confidence 1 2479999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCC
Q psy12349 156 ALESSD 161 (205)
Q Consensus 156 ~i~~~~ 161 (205)
|++...
T Consensus 295 y~~~~~ 300 (303)
T PHA02742 295 FAKLMA 300 (303)
T ss_pred HHHHhc
Confidence 998653
No 3
>PHA02738 hypothetical protein; Provisional
Probab=100.00 E-value=6.7e-33 Score=237.64 Aligned_cols=150 Identities=21% Similarity=0.362 Sum_probs=132.7
Q ss_pred cccCCCC-CCCCCcCcEEEEEeeeccCCCCeEEEEee---cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC
Q psy12349 13 TTNNNNN-NKNSTDDTTRVPLLRDNSSDSDYINASFI---KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP 88 (205)
Q Consensus 13 ~~~~~~~-~~~~~~g~~~V~l~~~~~~~~~~~~r~l~---~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~ 88 (205)
.-||+.. .....+|.|+|++++.+ ...+|+.+.|. ..++++.|.||||++|||+++|.++..+++|+..|+....
T Consensus 133 ~~YWp~~~~~~~~~g~f~V~~~~~~-~~~~~~~~~l~l~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~ 211 (320)
T PHA02738 133 FPYWSDVEQGSIRFGKFKITTTQVE-THPHYVKSTLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQK 211 (320)
T ss_pred cccCCCCCCCceEeccEEEEEEEEE-ecCCeEEEEEEEEeCCCCcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 3589864 56778999999999766 55689888873 4567899999999999999999999999999999986421
Q ss_pred --------------CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHH
Q psy12349 89 --------------TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIA 154 (205)
Q Consensus 89 --------------~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl 154 (205)
..+||||||++|+||||+|||++++++++...+.+|+.+++..||+||+++|++.+||.|||.+++
T Consensus 212 ~~~~~~~~~~~~~~~~~PIVVHCs~GiGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~ 291 (320)
T PHA02738 212 ELAQESLQIGHNRLQPPPIVVHCNAGLGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVK 291 (320)
T ss_pred HhhhhhcccCccccCCCCeEEEcCCCCChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHH
Confidence 147999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCc
Q psy12349 155 SALESSDTL 163 (205)
Q Consensus 155 ~~i~~~~~l 163 (205)
+|+......
T Consensus 292 ~y~~~~~~~ 300 (320)
T PHA02738 292 RYVNLTVNK 300 (320)
T ss_pred HHHHhcCch
Confidence 999876554
No 4
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=6.6e-33 Score=237.97 Aligned_cols=149 Identities=25% Similarity=0.393 Sum_probs=130.0
Q ss_pred cccCCCCC-CCCCcCcEEEEEeeeccCCCCeEEEEee----cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhC
Q psy12349 13 TTNNNNNN-KNSTDDTTRVPLLRDNSSDSDYINASFI----KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNST 87 (205)
Q Consensus 13 ~~~~~~~~-~~~~~g~~~V~l~~~~~~~~~~~~r~l~----~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~ 87 (205)
.-||+... ....+|.+.|++++.. ...+|+.+.|. ..+++|.|.||||++|||+++|.++..+++|+..++...
T Consensus 155 ~~YWP~~~~~~~~~g~~~V~~~~~~-~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~ 233 (323)
T PHA02746 155 FELWTKEEDSELAFGRFVAKILDII-EELSFTKTRLMITDKISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQ 233 (323)
T ss_pred CCCCCCCCCCCeEEcCEEEEEEEEE-EcCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHH
Confidence 45898764 4567999999998654 45678888772 346789999999999999999999999999999998642
Q ss_pred C-----------CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHH
Q psy12349 88 P-----------TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASA 156 (205)
Q Consensus 88 ~-----------~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~ 156 (205)
. ..+||||||++|+||||+|||++++++++..++.+|+.++++.||.||+++|++.+||.|||.++.++
T Consensus 234 ~~~~~~~~~~~~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~ 313 (323)
T PHA02746 234 AELIKQADNDPQTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYA 313 (323)
T ss_pred HHHhhhhccCCCCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHHHHHHHH
Confidence 1 23899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCC
Q psy12349 157 LESSDT 162 (205)
Q Consensus 157 i~~~~~ 162 (205)
|.....
T Consensus 314 l~~~~~ 319 (323)
T PHA02746 314 IIEEAK 319 (323)
T ss_pred HHHhhh
Confidence 876543
No 5
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=100.00 E-value=2.2e-32 Score=233.73 Aligned_cols=149 Identities=21% Similarity=0.370 Sum_probs=129.6
Q ss_pred ccCCC-CCCCCCcCcEEEEEeeeccCCCCeEEEEee----cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC
Q psy12349 14 TNNNN-NNKNSTDDTTRVPLLRDNSSDSDYINASFI----KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP 88 (205)
Q Consensus 14 ~~~~~-~~~~~~~g~~~V~l~~~~~~~~~~~~r~l~----~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~ 88 (205)
-||+. ......+|.++|++++.. ...+|+.+.|. ..+++|.|+||||++|||+++|.+...+++|+..++....
T Consensus 138 ~YWp~~~~~~~~~g~~~V~~~~~~-~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~ 216 (312)
T PHA02747 138 QYWCLNEDGNIDMEDFRIETLKTS-VRAKYILTLIEITDKILKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRK 216 (312)
T ss_pred ccCCCCCCCCeEeeeEEEEEEEEE-ecCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHH
Confidence 48874 456678999999998765 56789988882 3578899999999999999999999999999888765421
Q ss_pred -----------CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHH---HHHHH
Q psy12349 89 -----------TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYL---YQSIA 154 (205)
Q Consensus 89 -----------~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi---~~~vl 154 (205)
..+||||||++|+||||+|||++++++++...+.+|+.++++.||.||+++|++.+||.|| |+++.
T Consensus 217 ~~~~~~~~~~~~~~PIvVHCsaGvGRtGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~ 296 (312)
T PHA02747 217 KSGKLFNPKDALLCPIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLH 296 (312)
T ss_pred HhhccccccccCCCCEEEEecCCCcchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHHHHH
Confidence 1379999999999999999999999999999999999999999999999999999999999 99999
Q ss_pred HHHHcCCCc
Q psy12349 155 SALESSDTL 163 (205)
Q Consensus 155 ~~i~~~~~l 163 (205)
+|+.....+
T Consensus 297 ~~~~~~~~~ 305 (312)
T PHA02747 297 YFLSKIKAI 305 (312)
T ss_pred HHHHHhhcc
Confidence 998766433
No 6
>KOG0790|consensus
Probab=100.00 E-value=6.1e-33 Score=238.52 Aligned_cols=147 Identities=30% Similarity=0.525 Sum_probs=135.7
Q ss_pred ccCCCCCCCCCcCcEEEEEeeeccCCCCeEEEEee-----cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC
Q psy12349 14 TNNNNNNKNSTDDTTRVPLLRDNSSDSDYINASFI-----KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP 88 (205)
Q Consensus 14 ~~~~~~~~~~~~g~~~V~l~~~~~~~~~~~~r~l~-----~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~ 88 (205)
-||+..+....||.++|+++++. .-.+|++|+|. .++..|.|+||||..|||||+|.++..+++|++.|.....
T Consensus 368 ~YWPee~~~e~~G~~~v~~v~E~-~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~ 446 (600)
T KOG0790|consen 368 KYWPEEGALEEYGVMRVRNVKES-DTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQE 446 (600)
T ss_pred ccCCcccchhhcCceEEEecccc-ccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhc
Confidence 48999999999999999999776 55699999994 4578899999999999999999999999999999998765
Q ss_pred ---CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCC---cccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHcCC
Q psy12349 89 ---TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNR---KLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASALESSD 161 (205)
Q Consensus 89 ---~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~---~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i~~~~ 161 (205)
.-+||+|||++|+||||+|++|+++++++...+ .+|+..+++.+|.||.|+|||..||.|+|.||..||+...
T Consensus 447 ~l~~AgpIvVHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqhyietl~ 525 (600)
T KOG0790|consen 447 SLMDAGPIVVHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQHYIETLQ 525 (600)
T ss_pred cccccCcEEEEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999999998887 7999999999999999999999999999999999987643
No 7
>KOG0792|consensus
Probab=99.97 E-value=2.1e-31 Score=247.37 Aligned_cols=151 Identities=28% Similarity=0.476 Sum_probs=140.7
Q ss_pred cCCCC-CCCCCcCcEEEEEeeeccCCCCeEEEEe----ecCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCC
Q psy12349 15 NNNNN-NKNSTDDTTRVPLLRDNSSDSDYINASF----IKDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPT 89 (205)
Q Consensus 15 ~~~~~-~~~~~~g~~~V~l~~~~~~~~~~~~r~l----~~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~ 89 (205)
||++. -....||.|+|++..++ .-..|+.|.| ..+++.|.|+|+||+.|||+++|+++..|++|++.|+..+..
T Consensus 983 YWPr~~~~t~~ygrf~v~~~~~~-~t~~y~tr~m~l~~~~t~eeR~V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~ 1061 (1144)
T KOG0792|consen 983 YWPRLGHETMEYGRFQVTCVFEQ-QTTCYVTREMTLKDLQTREERTVWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRG 1061 (1144)
T ss_pred ccCCCCccceeccceEEEEEEec-ccccEEEEeEEEeeccCCceeeeeeeeecccccCCCCCChHHHHHHHHHHHHHhcc
Confidence 89998 88899999999999887 4568888888 478899999999999999999999999999999999998874
Q ss_pred -CCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHcCCCcccC
Q psy12349 90 -SQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASALESSDTLKLK 166 (205)
Q Consensus 90 -~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i~~~~~l~~~ 166 (205)
+.||||||++|+||||+++.+++++..++.+..+++.++++.||.||.++|+|..||.|||++++.++++...+.+.
T Consensus 1062 t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~QR~~mVQT~~QYkFVyevil~~l~~~~l~~~~ 1139 (1144)
T KOG0792|consen 1062 TNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRDQRAMMVQTLSQYKFVYEVILRVLKRGRLIPLA 1139 (1144)
T ss_pred CCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhhccchHHhhHHHHHHHHHHHhccccccc
Confidence 67999999999999999999999999999999999999999999999999999999999999999999988766553
No 8
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.97 E-value=4.1e-30 Score=214.16 Aligned_cols=143 Identities=37% Similarity=0.610 Sum_probs=129.5
Q ss_pred CcccCCCCCCCCCcCcEEEEEeeeccCCCCeEEEEee----cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhC
Q psy12349 12 NTTNNNNNNKNSTDDTTRVPLLRDNSSDSDYINASFI----KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNST 87 (205)
Q Consensus 12 ~~~~~~~~~~~~~~g~~~V~l~~~~~~~~~~~~r~l~----~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~ 87 (205)
...||+.......+|.++|++.+.+ ...+|+.+.|. ..++++.|+||||.+|||+++|.+...+++|+..++...
T Consensus 111 ~~~Ywp~~~~~~~~g~~~V~~~~~~-~~~~~~~~~l~v~~~~~~~~~~v~~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~ 189 (258)
T smart00194 111 CAQYWPEEEEPLTYGDITVTLKSVE-KVDDYTIRTLEVTNTGCSETRTVTHYHYTNWPDHGVPESPKSILDLVRAVRKSQ 189 (258)
T ss_pred ccccCCCCCCcceECCEEEEEEEEE-ecCCEEEEEEEEEECCCCCcEEEEEEeeCCCCCCCCCCCHHHHHHHHHHHHHhh
Confidence 3568888877899999999999776 45799999882 335899999999999999999999999999999999876
Q ss_pred C-CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q psy12349 88 P-TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIAS 155 (205)
Q Consensus 88 ~-~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~ 155 (205)
. ..+||+|||++|+||||+|||++++++++..++.+++.++++.||++|+++|++..||.|+|.++++
T Consensus 190 ~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~~~~Qy~f~~~~l~~ 258 (258)
T smart00194 190 STSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLYRAILE 258 (258)
T ss_pred ccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHhC
Confidence 4 2789999999999999999999999999999999999999999999999999999999999999863
No 9
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.97 E-value=3.8e-29 Score=205.01 Aligned_cols=142 Identities=39% Similarity=0.629 Sum_probs=128.1
Q ss_pred cccCCCCCCCCCcCcEEEEEeeeccCCCCeEEEEee----cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC
Q psy12349 13 TTNNNNNNKNSTDDTTRVPLLRDNSSDSDYINASFI----KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP 88 (205)
Q Consensus 13 ~~~~~~~~~~~~~g~~~V~l~~~~~~~~~~~~r~l~----~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~ 88 (205)
.-||+.......+|.++|++.+.+ ...+++.++|. ..+.++.|.||||.+||+.++|.+...+++|+..++....
T Consensus 84 ~~Ywp~~~~~~~~g~~~V~~~~~~-~~~~~~~~~l~i~~~~~~~~~~V~~~~~~~W~d~~~p~~~~~~~~~~~~v~~~~~ 162 (231)
T cd00047 84 AQYWPEEEGSLTYGDITVTLVSEE-KLDDYTVRTLKLSNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQ 162 (231)
T ss_pred ccCCCCCCCCeEecCEEEEEEEEE-EcCCEEEEEEEEEECCCCCceEEEEEeECCCCCCCccCChHHHHHHHHHHHHHhc
Confidence 468888767888999999999776 44789988882 2368999999999999999999988999999999998742
Q ss_pred --CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q psy12349 89 --TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIAS 155 (205)
Q Consensus 89 --~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~ 155 (205)
..+||+|||.+|+||||+|||+++++.++...+.+++.++++.+|++|+++|++.+||.|||.++++
T Consensus 163 ~~~~~pivVHC~~G~gRsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~~l~~ 231 (231)
T cd00047 163 QPGSGPIVVHCSAGVGRTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAILE 231 (231)
T ss_pred cCCCCCeEEECCCCCCccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHhC
Confidence 4789999999999999999999999999999999999999999999999999999999999999863
No 10
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.96 E-value=1.8e-28 Score=199.87 Aligned_cols=143 Identities=28% Similarity=0.495 Sum_probs=129.3
Q ss_pred cccCC-CCCCCCCcCcEEEEEe-eeccCCCCeEEEEee----cCC-cEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHh
Q psy12349 13 TTNNN-NNNKNSTDDTTRVPLL-RDNSSDSDYINASFI----KDS-EVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRN 85 (205)
Q Consensus 13 ~~~~~-~~~~~~~~g~~~V~l~-~~~~~~~~~~~r~l~----~~~-~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~ 85 (205)
..||+ ..+....+|.+.|++. +.....++++++.|. ..+ +++.+.||||..||+.++|.+...+++++..+..
T Consensus 85 ~~y~P~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~~l~v~~~~~~~~~~~v~~~~~~~W~~~~~P~~~~~~~~~~~~v~~ 164 (235)
T PF00102_consen 85 DQYWPLKEGESLKFGDYTVKCKEKIEENSKHYTVRKLEVTNGKSKKKSRTVTHFHYTNWPDDGVPPSPESFLDFIRKVNK 164 (235)
T ss_dssp --TSTSSSSSEEEETTEEEEEEEEEEEEESSEEEEEEEEEETTTTEEEEEEEEEEEESSSSSSSGSSSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccceEEeeccccccccccccccccceeeeeccccccccccchhhhhhhhccc
Confidence 56888 8889999999999999 666577899999983 223 3689999999999999999999999999999998
Q ss_pred hCC-CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Q psy12349 86 STP-TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIAS 155 (205)
Q Consensus 86 ~~~-~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~ 155 (205)
... ..+|++|||.+|+||||+||+++++++++..++.+++.++++.||++|+++|++..||.|+|.++++
T Consensus 165 ~~~~~~~pivVhc~~G~gRsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~~~~e 235 (235)
T PF00102_consen 165 SKDDPNGPIVVHCSDGVGRSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYMAVLE 235 (235)
T ss_dssp HHSTTSSEEEEESSSSSHHHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHHHHHH
T ss_pred cccCCccceEeecccccccccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHHHHHhC
Confidence 763 6799999999999999999999999999999999999999999999999999999999999999986
No 11
>KOG4228|consensus
Probab=99.96 E-value=3.4e-29 Score=234.54 Aligned_cols=145 Identities=33% Similarity=0.565 Sum_probs=133.6
Q ss_pred ccCCCCCCCCCcCcEEEEEeeeccCCCCeEEEEee----cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC-
Q psy12349 14 TNNNNNNKNSTDDTTRVPLLRDNSSDSDYINASFI----KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP- 88 (205)
Q Consensus 14 ~~~~~~~~~~~~g~~~V~l~~~~~~~~~~~~r~l~----~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~- 88 (205)
-||+ -.+..||+++|++.+.+ ...+|.+|+|. +.++.|.|+||||++|||+++|..+..++.|++.++....
T Consensus 652 qYWP--~~t~~yGdi~V~~~~~~-~~a~y~iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~lL~f~rrvk~~~p~ 728 (1087)
T KOG4228|consen 652 QYWP--EGTETYGDIKVTLVQTK-PLAEYGIRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTGLLKFRRRVKTFNPP 728 (1087)
T ss_pred ccCC--CCccccccccccceeee-eeccceEEeeeccccCCCCCceeeeeeeccCCCCCCcccchHHHHHHHHhccCCCc
Confidence 3788 77889999999999555 77899999992 4567899999999999999999999999999999999875
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHcCC
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASALESSD 161 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i~~~~ 161 (205)
..||+||||++|+||||+|+++|.++++++.++.+|++..+..||.||..+||+.+||.|+|+|++++.....
T Consensus 729 ~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~~G~ 801 (1087)
T KOG4228|consen 729 DAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACLCGD 801 (1087)
T ss_pred CCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHHHHHHHHHhcCC
Confidence 4599999999999999999999999999999999999999999999999999999999999999999877655
No 12
>KOG0791|consensus
Probab=99.95 E-value=1.1e-27 Score=202.75 Aligned_cols=149 Identities=34% Similarity=0.603 Sum_probs=137.2
Q ss_pred cccCCCCCCCCCcCcEEEEEeeeccCCCCeEEEEee--cCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC-C
Q psy12349 13 TTNNNNNNKNSTDDTTRVPLLRDNSSDSDYINASFI--KDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP-T 89 (205)
Q Consensus 13 ~~~~~~~~~~~~~g~~~V~l~~~~~~~~~~~~r~l~--~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~-~ 89 (205)
+-+|+.......+|+++|+++.+. ...++.+|.|. ..+++|.+.||||..|||+++|..+..+++|+..++.... .
T Consensus 208 ~~ywP~~~~~~~~gdi~V~~v~e~-~~~~w~ir~~~l~~~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~ 286 (374)
T KOG0791|consen 208 DEYWPDEEVPVAYGDITVTMVSEE-SLDEWTIREFRLNYAGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTS 286 (374)
T ss_pred hhhcccccccceeccEEEEEechh-hcCCceEEEEeeecccccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccC
Confidence 347888888999999999999775 66788888874 4689999999999999999999999999999999999876 5
Q ss_pred CCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHcCCC
Q psy12349 90 SQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASALESSDT 162 (205)
Q Consensus 90 ~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i~~~~~ 162 (205)
.+|++|||++|+||||+|+|++.+++++..+..+|+..++..+|..|+.||+|..||.|+|.++++.+..+..
T Consensus 287 ~~p~iVhCSAGVgRTGTFiald~LLqq~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~l~~~~~ 359 (374)
T KOG0791|consen 287 KGPTIVHCSAGVGRTGTFIALDRLLQQIDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLESLQGKKP 359 (374)
T ss_pred CCceeEEeecccccccchHhHHHHHHHhcccccccHHHHHHHhhhccccccchHHHHHHHHHHHHHHHhCCCc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999887755
No 13
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.94 E-value=4.9e-26 Score=200.76 Aligned_cols=136 Identities=25% Similarity=0.364 Sum_probs=111.3
Q ss_pred CCCCCcCcEEEEEeeeccCCCCeEEEEe---ecCCcE-EEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC-------
Q psy12349 20 NKNSTDDTTRVPLLRDNSSDSDYINASF---IKDSEV-LEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP------- 88 (205)
Q Consensus 20 ~~~~~~g~~~V~l~~~~~~~~~~~~r~l---~~~~~~-~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~------- 88 (205)
.....||.++|++.+++....+++++.+ ...++. +.|.||||++|||+++|++...++.|++.++....
T Consensus 383 ~~s~tYGdItVts~seesls~g~iIR~f~L~Ik~~E~R~tV~QFHyTnWPDHGVPpST~~LleLvr~Vr~~~q~~~~~~~ 462 (535)
T PRK15375 383 RGSYTFGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRS 462 (535)
T ss_pred CCcceeccEEEEEEEEEeccCCceEEEEEEEEecCCceeEEEEEEeCCCCCCCCCCChHHHHHHHHHHHHhhhccccccc
Confidence 4667899999999876654456777765 333444 58999999999999999888889999999987532
Q ss_pred --CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC-CCCCHHHHHHHHHHHHHHHHc
Q psy12349 89 --TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAH-MVQSEAQYVYLYQSIASALES 159 (205)
Q Consensus 89 --~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~-~v~t~~Qy~fi~~~vl~~i~~ 159 (205)
...+++|||++|+||||+|||++++ ..+..+++.+++..||.+|++ |||+.+||.+++.+-..++..
T Consensus 463 ~~nk~~PVVHCSAGVGRTGTFIAi~ll----k~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~~~~ 532 (535)
T PRK15375 463 SSDKHLPMIHCLGGVGRTGTMAAALVL----KDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLLMT 532 (535)
T ss_pred ccCCCCceEEcCCCCchHHHHHHHHHH----hccccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhhh
Confidence 1133489999999999999999874 334679999999999999999 999999999999988877654
No 14
>KOG0793|consensus
Probab=99.94 E-value=2.2e-27 Score=212.88 Aligned_cols=142 Identities=29% Similarity=0.505 Sum_probs=131.1
Q ss_pred cCCCCCCCCCcCcEEEEEeeeccCCCCeEEEEe----ecCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC-C
Q psy12349 15 NNNNNNKNSTDDTTRVPLLRDNSSDSDYINASF----IKDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP-T 89 (205)
Q Consensus 15 ~~~~~~~~~~~g~~~V~l~~~~~~~~~~~~r~l----~~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~-~ 89 (205)
||+... ...|+-|.|.|++|.+++++|.+|.| ..++++|+|++|||..||+.++|.+..++++|-++|++..+ .
T Consensus 848 YWPdeG-selyhiyEV~LVSEHIWceDfLVRSFYLKNlqtseTRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGR 926 (1004)
T KOG0793|consen 848 YWPDEG-SELYHIYEVNLVSEHIWCEDFLVRSFYLKNLQTSETRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGR 926 (1004)
T ss_pred cCCCCC-cceeeeEEeeeehhhhhhhhHHHHHHHHhhcccccceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCC
Confidence 566544 34688999999999999999999999 57899999999999999999999999999999999999887 7
Q ss_pred CCcEEEEcCCCCchhhHHHHHHHHHHHHhcC-CcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHH
Q psy12349 90 SQLSVVHCSAGVGRTGTYIACDLLLQCLQHN-RKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASAL 157 (205)
Q Consensus 90 ~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~-~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i 157 (205)
+.||||||++|.||||++|++++.+.++.+. +.+||..++..+|.||+|+|.|.+||.|++.||.+-+
T Consensus 927 ScpIiVH~sdGaGRTG~YiliDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEV 995 (1004)
T KOG0793|consen 927 SCPIIVHCSDGAGRTGTYILIDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEV 995 (1004)
T ss_pred CCceEEEccCCCCccceeeeHHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHH
Confidence 8999999999999999999999999888665 5899999999999999999999999999999998854
No 15
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=99.93 E-value=3.5e-25 Score=158.88 Aligned_cols=100 Identities=46% Similarity=0.845 Sum_probs=93.0
Q ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC---CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcC-CcccHHHHHHH
Q psy12349 56 VKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP---TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHN-RKLNIFRTVLD 131 (205)
Q Consensus 56 v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~---~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~-~~v~v~~~v~~ 131 (205)
+.||||.+||+.++|.....+++|+..++.... .++||+|||.+|+||||+||++++++.++..+ ..+++.++++.
T Consensus 2 ~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (105)
T smart00404 2 VKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKE 81 (105)
T ss_pred eEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 789999999999999888999999999988753 36899999999999999999999999999887 78999999999
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHH
Q psy12349 132 LREQRAHMVQSEAQYVYLYQSIAS 155 (205)
Q Consensus 132 lR~~R~~~v~t~~Qy~fi~~~vl~ 155 (205)
+|.+|++++++..||.|+|.++++
T Consensus 82 ir~~r~~~~~~~~q~~~~~~~~~~ 105 (105)
T smart00404 82 LRKQRPGMVQTFEQYLFLYRALLE 105 (105)
T ss_pred HHhhhhhhCCcHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 16
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=99.93 E-value=3.5e-25 Score=158.88 Aligned_cols=100 Identities=46% Similarity=0.845 Sum_probs=93.0
Q ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC---CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcC-CcccHHHHHHH
Q psy12349 56 VKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP---TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHN-RKLNIFRTVLD 131 (205)
Q Consensus 56 v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~---~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~-~~v~v~~~v~~ 131 (205)
+.||||.+||+.++|.....+++|+..++.... .++||+|||.+|+||||+||++++++.++..+ ..+++.++++.
T Consensus 2 ~~~~~~~~Wpd~~~P~~~~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (105)
T smart00012 2 VKHYHYTGWPDHGVPESPDSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGTFVALDILLQQLESETGEVDIFQTVKE 81 (105)
T ss_pred eEEEeeCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 789999999999999888999999999988753 36899999999999999999999999999887 78999999999
Q ss_pred HHhhCCCCCCCHHHHHHHHHHHHH
Q psy12349 132 LREQRAHMVQSEAQYVYLYQSIAS 155 (205)
Q Consensus 132 lR~~R~~~v~t~~Qy~fi~~~vl~ 155 (205)
+|.+|++++++..||.|+|.++++
T Consensus 82 ir~~r~~~~~~~~q~~~~~~~~~~ 105 (105)
T smart00012 82 LRKQRPGMVQTFEQYLFLYRALLE 105 (105)
T ss_pred HHhhhhhhCCcHHHHHHHHHHHhC
Confidence 999999999999999999999863
No 17
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.90 E-value=1.8e-23 Score=170.43 Aligned_cols=118 Identities=35% Similarity=0.596 Sum_probs=98.5
Q ss_pred CCeEEEEe---ecCCcEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHH
Q psy12349 40 SDYINASF---IKDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQC 116 (205)
Q Consensus 40 ~~~~~r~l---~~~~~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~ 116 (205)
.-+..+.| ...++.+.|.||+|.+|+|.+.| +...+.++++.+...--..+|++|||++|+||||||+|++.++++
T Consensus 166 ~~~~~~~f~L~~~~~~~k~Ihhf~y~nW~D~~~p-~i~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~ 244 (302)
T COG5599 166 NIVNVHNFELTSINGPPKKIHHFQYINWVDFNVP-DIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRM 244 (302)
T ss_pred ceeeeeecccccCCCCccEEEEEEecCccccCCc-CHHHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhc
Confidence 34445555 24588899999999999999999 788888888888754224799999999999999999999999887
Q ss_pred HhcC--------Cccc-HHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH
Q psy12349 117 LQHN--------RKLN-IFRTVLDLREQRAHMVQSEAQYVYLYQSIASALE 158 (205)
Q Consensus 117 l~~~--------~~v~-v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i~ 158 (205)
.... ...| +++++..||+||..|||+..||.|+|.+++++..
T Consensus 245 ~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~Qf~flY~~~~~l~~ 295 (302)
T COG5599 245 PNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELNK 295 (302)
T ss_pred cccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 6544 1223 7899999999999999999999999999999883
No 18
>KOG4228|consensus
Probab=99.89 E-value=1.8e-23 Score=196.38 Aligned_cols=142 Identities=23% Similarity=0.425 Sum_probs=121.4
Q ss_pred cCCCCCCCCCcCcEEEEEeeeccCCCCeEEEEee----cCCcEEEEEEEEeCCCCCCCCCCC-hHHHHHHHHHHHhhCC-
Q psy12349 15 NNNNNNKNSTDDTTRVPLLRDNSSDSDYINASFI----KDSEVLEVKHFHLHDWQDFSIPGG-PDVLVNFCHLVRNSTP- 88 (205)
Q Consensus 15 ~~~~~~~~~~~g~~~V~l~~~~~~~~~~~~r~l~----~~~~~~~v~h~~y~~Wpd~~~P~~-~~~~~~~i~~v~~~~~- 88 (205)
||.. ...-.+|.++|..+.+. ..+.++.|.|. ..+.++.|.||||++||..+.|+. ...+..++..+.+...
T Consensus 938 yw~~-~g~~~yg~i~Ve~~~~~-~~~~~t~r~f~i~n~~~~~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~ 1015 (1087)
T KOG4228|consen 938 YWPP-EGSQRYGPIEVEDMNEH-INPQYTAREFGVTNEREKQSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQL 1015 (1087)
T ss_pred ccCC-cCceecCcEEEEecccc-cchhhhhhhheeeeccccCceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhh
Confidence 5666 77788999999999665 66788888873 456789999999999998776654 4455555555555444
Q ss_pred -CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHH
Q psy12349 89 -TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASALE 158 (205)
Q Consensus 89 -~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i~ 158 (205)
..+|++|||++|+||+|+|||+.+++++++.++.+||+++++.||.+||++|++.+||.|||+++++|+.
T Consensus 1016 ~~~~P~~Vhc~nG~~rsg~f~ai~~l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~~~y~~ 1086 (1087)
T KOG4228|consen 1016 GADGPIIVHCLNGVGRTGTFCAISILLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVALEYLG 1086 (1087)
T ss_pred cCCCCEEEEEcCCCcceeehHHHHHHHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHHHHHHhhc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999975
No 19
>KOG0789|consensus
Probab=99.87 E-value=2.3e-21 Score=171.10 Aligned_cols=151 Identities=22% Similarity=0.304 Sum_probs=111.0
Q ss_pred ccCCCCC-CCCCcCcEEEEEeeecc--C---CCCeEEEEe--e-cCC--cEEEEEEEEeCCCCCCCCCCChHHHHHHHHH
Q psy12349 14 TNNNNNN-KNSTDDTTRVPLLRDNS--S---DSDYINASF--I-KDS--EVLEVKHFHLHDWQDFSIPGGPDVLVNFCHL 82 (205)
Q Consensus 14 ~~~~~~~-~~~~~g~~~V~l~~~~~--~---~~~~~~r~l--~-~~~--~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~ 82 (205)
-||+... ....|+.+..++..... . ...+....+ . ..+ .++.|.||||++|||+++|.+...++.++..
T Consensus 211 ~Y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~WPd~~~p~~~~~~l~~~~~ 290 (415)
T KOG0789|consen 211 SYFPSKRGVKLTFLEFGKKFVENRKVEMKQQDQTSTVGLLLLVLPEGLEISSSVVHYHYINWPDHGAPDSVKSILPLLRQ 290 (415)
T ss_pred hcCcccCCCeeeecccceeEEEeeeeecccccccceeeEEEeecCCCccccceEEEEeeCCCccccCCcchHHHHHHHHh
Confidence 4677666 34456666444443221 1 123333222 1 122 2368999999999999999989999998875
Q ss_pred -HHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcC-CcccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy12349 83 -VRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHN-RKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASALESS 160 (205)
Q Consensus 83 -v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~-~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i~~~ 160 (205)
+.......+|++|||++|+||||+|+++++++.++... ...++..+++.+|.+|++++++..||.|+|.++++|+...
T Consensus 291 ~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~~~~~ 370 (415)
T KOG0789|consen 291 SVLELRPKQEPIEVHCSAGAGRAGTLVLIEHALIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKYIKKV 370 (415)
T ss_pred hhhhhcCCCCCeEEECCCCCCccchHHHHHHHHHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHc
Confidence 11111146899999999999999999999887777543 4677999999999999999999999999999999999985
Q ss_pred CCcc
Q psy12349 161 DTLK 164 (205)
Q Consensus 161 ~~l~ 164 (205)
....
T Consensus 371 ~~~~ 374 (415)
T KOG0789|consen 371 SYWP 374 (415)
T ss_pred cCCc
Confidence 5443
No 20
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=99.66 E-value=3.9e-16 Score=122.21 Aligned_cols=90 Identities=26% Similarity=0.412 Sum_probs=67.8
Q ss_pred EEEEeCCCC--CCCCCCChHHHHHHHHHHHhhC----CCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHH
Q psy12349 57 KHFHLHDWQ--DFSIPGGPDVLVNFCHLVRNST----PTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVL 130 (205)
Q Consensus 57 ~h~~y~~Wp--d~~~P~~~~~~~~~i~~v~~~~----~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~ 130 (205)
.+++|..|| |..+| +.+.+.++++.+.... ..++||+|||.+|+||||+||+++++. .+.+++.++++
T Consensus 60 ~gi~~~~~p~~D~~~P-~~~~i~~~~~~i~~~~~~~~~~g~~V~VHC~aGigRSgt~~a~yL~~-----~~~~s~~eAi~ 133 (166)
T PTZ00242 60 NGIEVHDWPFDDGAPP-PKAVIDNWLRLLDQEFAKQSTPPETIAVHCVAGLGRAPILVALALVE-----YGGMEPLDAVG 133 (166)
T ss_pred CCCEEEecCCCCCCCC-CHHHHHHHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHH-----hCCCCHHHHHH
Confidence 355666666 55555 4544444444444322 258999999999999999999998762 34679999999
Q ss_pred HHHhhCCCCCCCHHHHHHHHHHH
Q psy12349 131 DLREQRAHMVQSEAQYVYLYQSI 153 (205)
Q Consensus 131 ~lR~~R~~~v~t~~Qy~fi~~~v 153 (205)
.+|++|++++ +..|+.|+.+..
T Consensus 134 ~vr~~R~~~i-~~~Q~~~l~~~~ 155 (166)
T PTZ00242 134 FVREKRKGAI-NQTQLQFLKKYK 155 (166)
T ss_pred HHHHHCCCCc-hHHHHHHHHHHH
Confidence 9999999998 589999997754
No 21
>KOG1720|consensus
Probab=99.61 E-value=3.5e-15 Score=118.35 Aligned_cols=92 Identities=30% Similarity=0.416 Sum_probs=81.6
Q ss_pred EEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHh
Q psy12349 55 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLRE 134 (205)
Q Consensus 55 ~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~ 134 (205)
.+.|+++ -.||.+.| ++..+.+|++.+....+ .+.|.|||.+|+||||+++|++++.. ..+...+++..||.
T Consensus 115 Gi~h~~l-~f~Dg~tP-~~~~v~~fv~i~e~~~~-~g~iaVHCkaGlGRTG~liAc~lmy~-----~g~ta~eaI~~lR~ 186 (225)
T KOG1720|consen 115 GIDHHDL-FFADGSTP-TDAIVKEFVKIVENAEK-GGKIAVHCKAGLGRTGTLIACYLMYE-----YGMTAGEAIAWLRI 186 (225)
T ss_pred Cceeeee-ecCCCCCC-CHHHHHHHHHHHHHHHh-cCeEEEEeccCCCchhHHHHHHHHHH-----hCCCHHHHHHHHHh
Confidence 3778776 37888888 68999999999999874 89999999999999999999999955 47889999999999
Q ss_pred hCCCCCCCHHHHHHHHHHHH
Q psy12349 135 QRAHMVQSEAQYVYLYQSIA 154 (205)
Q Consensus 135 ~R~~~v~t~~Qy~fi~~~vl 154 (205)
.|||+|++++|+.++++-..
T Consensus 187 ~RpG~V~gpqQ~~l~~~q~~ 206 (225)
T KOG1720|consen 187 CRPGAVIGPQQHKLLHKQRD 206 (225)
T ss_pred cCCccccCHHHHHHHHHHHH
Confidence 99999999999999888655
No 22
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=99.59 E-value=1e-14 Score=119.00 Aligned_cols=91 Identities=21% Similarity=0.347 Sum_probs=72.1
Q ss_pred EEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q psy12349 54 LEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLR 133 (205)
Q Consensus 54 ~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR 133 (205)
..+.++++ .|||+.+|. .+.+.+++..+......+++|+|||.+|+||||+++|++++. ..++..+++..+|
T Consensus 136 ~GI~~~~l-pipDg~aPs-~~~i~~~l~~i~~~l~~g~~VaVHC~AGlGRTGtl~AayLI~------~GmspeeAI~~VR 207 (241)
T PTZ00393 136 AGINVHEL-IFPDGDAPT-VDIVSNWLTIVNNVIKNNRAVAVHCVAGLGRAPVLASIVLIE------FGMDPIDAIVFIR 207 (241)
T ss_pred cCCeEEEe-ecCCCCCCC-HHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHH------cCCCHHHHHHHHH
Confidence 34666554 689998884 555566666665544468899999999999999999998872 3679999999999
Q ss_pred hhCCCCCCCHHHHHHHHHHH
Q psy12349 134 EQRAHMVQSEAQYVYLYQSI 153 (205)
Q Consensus 134 ~~R~~~v~t~~Qy~fi~~~v 153 (205)
..||+++ +..|+.|+...-
T Consensus 208 ~~RPgAI-n~~Q~~fL~~y~ 226 (241)
T PTZ00393 208 DRRKGAI-NKRQLQFLKAYK 226 (241)
T ss_pred HHCCCCC-CHHHHHHHHHHH
Confidence 9999998 578999987643
No 23
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=99.44 E-value=8.7e-13 Score=99.37 Aligned_cols=89 Identities=20% Similarity=0.207 Sum_probs=67.8
Q ss_pred EEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q psy12349 54 LEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLR 133 (205)
Q Consensus 54 ~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR 133 (205)
....|+.+.+|++...+.....+.+++..... .++||+|||.+|.||||++++++++.. ..+++.++++.+|
T Consensus 48 ~~~~~~~~~D~~~~~~~~~~~~~~~~i~~~~~---~~~~vlVHC~~G~~Rs~~~~~~~l~~~-----~~~~~~~a~~~vr 119 (139)
T cd00127 48 FNYLYVPILDLPSQDISKYFDEAVDFIDDARE---KGGKVLVHCLAGVSRSATLVIAYLMKT-----LGLSLREAYEFVK 119 (139)
T ss_pred ceEEEEEceeCCCCChHHHHHHHHHHHHHHHh---cCCcEEEECCCCCchhHHHHHHHHHHH-----cCCCHHHHHHHHH
Confidence 35677777777754443334455566655554 578999999999999999999888754 3689999999999
Q ss_pred hhCCCCCCCHHHHHHHH
Q psy12349 134 EQRAHMVQSEAQYVYLY 150 (205)
Q Consensus 134 ~~R~~~v~t~~Qy~fi~ 150 (205)
..||.+..+..+...+.
T Consensus 120 ~~r~~~~~~~~~~~~l~ 136 (139)
T cd00127 120 SRRPIISPNAGFMRQLK 136 (139)
T ss_pred HHCCccCCCHHHHHHHH
Confidence 99999888887776654
No 24
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.36 E-value=1e-11 Score=98.50 Aligned_cols=95 Identities=24% Similarity=0.342 Sum_probs=75.4
Q ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhh
Q psy12349 56 VKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQ 135 (205)
Q Consensus 56 v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~ 135 (205)
+.++++ .++|+..|+ ...+..++..+......+++|+|||.+|+|||||++|+++++. .+.....+++..+|..
T Consensus 73 ~~~~~~-~~~D~~~p~-~~~l~~~v~~i~~~~~~g~kVvVHC~~GigRSgtviaA~lm~~----~~~~~~~~~i~~~~~~ 146 (180)
T COG2453 73 IQVLHL-PILDGTVPD-LEDLDKIVDFIEEALSKGKKVVVHCQGGIGRSGTVIAAYLMLY----GGLSLADEAIAVKRRR 146 (180)
T ss_pred ceeeee-eecCCCCCc-HHHHHHHHHHHHHHHhcCCeEEEEcCCCCchHHHHHHHHHHHH----cCCCCHHHHHHHHHhc
Confidence 344444 578988884 5666666666666655677999999999999999999998855 3567788888889999
Q ss_pred CCCCCCCHHHHHHHHHHHHHH
Q psy12349 136 RAHMVQSEAQYVYLYQSIASA 156 (205)
Q Consensus 136 R~~~v~t~~Qy~fi~~~vl~~ 156 (205)
|++.+.+..|+.|..+.....
T Consensus 147 r~~~v~~~~q~~~~~e~~~~~ 167 (180)
T COG2453 147 RPGAVVTEIQHLFELEQELFR 167 (180)
T ss_pred CCcccccHHHHHHHHHHHHHH
Confidence 999999999999988876554
No 25
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=99.31 E-value=2.3e-11 Score=91.79 Aligned_cols=91 Identities=16% Similarity=0.190 Sum_probs=66.3
Q ss_pred EEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHh
Q psy12349 55 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLRE 134 (205)
Q Consensus 55 ~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~ 134 (205)
.+.++++ .++|...++....+...+..+......++||+|||.+|.||||++++++++.. ..+++.+++..+|.
T Consensus 44 ~~~~~~i-pi~D~~~~~~~~~~~~~~~~i~~~~~~~~~VlVHC~~G~~RS~~v~~~yl~~~-----~~~~~~~A~~~v~~ 117 (138)
T smart00195 44 GFTYLGV-PILDNTETKISPYFPEAVEFIEDAEKKGGKVLVHCQAGVSRSATLIIAYLMKY-----RNLSLNDAYDFVKD 117 (138)
T ss_pred CCEEEEE-ECCCCCCCChHHHHHHHHHHHHHHhcCCCeEEEECCCCCchHHHHHHHHHHHH-----hCCCHHHHHHHHHH
Confidence 3555555 35554333334444444555554444689999999999999999999998844 46899999999999
Q ss_pred hCCCCCCCHHHHHHHHH
Q psy12349 135 QRAHMVQSEAQYVYLYQ 151 (205)
Q Consensus 135 ~R~~~v~t~~Qy~fi~~ 151 (205)
.||.+..+..|+..+..
T Consensus 118 ~R~~~~p~~~~~~qL~~ 134 (138)
T smart00195 118 RRPIISPNFGFLRQLIE 134 (138)
T ss_pred HCCccCCCHhHHHHHHH
Confidence 99999999888766543
No 26
>KOG2836|consensus
Probab=99.24 E-value=3.9e-11 Score=89.25 Aligned_cols=84 Identities=27% Similarity=0.459 Sum_probs=64.2
Q ss_pred EEeCCCC-CCCCCCChHHHHHHHHHHHhhCC--CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhh
Q psy12349 59 FHLHDWQ-DFSIPGGPDVLVNFCHLVRNSTP--TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQ 135 (205)
Q Consensus 59 ~~y~~Wp-d~~~P~~~~~~~~~i~~v~~~~~--~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~ 135 (205)
++..+|| +.+.|+....+-+.+..+....+ ++..|.|||.+|+||+.+++|+.++ +..+...++++.+|++
T Consensus 63 I~Vldw~f~dg~ppp~qvv~~w~~l~~~~f~e~p~~cvavhcvaglgrapvlvalali------e~gmkyedave~ir~k 136 (173)
T KOG2836|consen 63 ITVLDWPFDDGAPPPNQVVDDWLSLVKTKFREEPGCCVAVHCVAGLGRAPVLVALALI------EAGMKYEDAVEMIRQK 136 (173)
T ss_pred ceEeecccccCCCCchHHHHHHHHHHHHHHhhCCCCeEEEEeecccCcchHHHHHHHH------HccccHHHHHHHHHHH
Confidence 4556898 67777655555555555554433 7788999999999999999999888 3467789999999999
Q ss_pred CCCCCCCHHHHHHH
Q psy12349 136 RAHMVQSEAQYVYL 149 (205)
Q Consensus 136 R~~~v~t~~Qy~fi 149 (205)
|.|++.+ .|..|+
T Consensus 137 rrga~n~-kql~~l 149 (173)
T KOG2836|consen 137 RRGAINS-KQLLYL 149 (173)
T ss_pred hhccccH-HHHHHH
Confidence 9999854 565554
No 27
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=99.22 E-value=5.2e-11 Score=89.18 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHH
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQ 151 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~ 151 (205)
....+.+|+..... .+++|+|||.+|.||||++++++++.. ..+++.++++.+|..||.+..+..|+..++.
T Consensus 58 ~~~~~~~~i~~~~~---~~~~VlVHC~~G~~RS~~v~~ayLm~~-----~~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 129 (133)
T PF00782_consen 58 HLDQAVEFIENAIS---EGGKVLVHCKAGLSRSGAVAAAYLMKK-----NGMSLEEAIEYVRSRRPQINPNPSFIRQLYE 129 (133)
T ss_dssp GHHHHHHHHHHHHH---TTSEEEEEESSSSSHHHHHHHHHHHHH-----HTSSHHHHHHHHHHHSTTSTHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhc---ccceeEEEeCCCcccchHHHHHHHHHH-----cCCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 44556666665544 679999999999999999999999854 3679999999999999999988888777654
No 28
>PRK12361 hypothetical protein; Provisional
Probab=98.92 E-value=8.9e-09 Score=94.59 Aligned_cols=91 Identities=20% Similarity=0.281 Sum_probs=72.0
Q ss_pred EEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhh
Q psy12349 56 VKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQ 135 (205)
Q Consensus 56 v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~ 135 (205)
+.++++.- .|...| +.+.+.+.++.+......+++|+|||..|.|||+++++++++.. ....++.++++.+|+.
T Consensus 143 i~yl~iPi-~D~~~p-~~~~l~~a~~~i~~~~~~~~~VlVHC~~G~sRSa~vv~ayLm~~----~~~~~~~eA~~~vr~~ 216 (547)
T PRK12361 143 IDYLNIPI-LDHSVP-TLAQLNQAINWIHRQVRANKSVVVHCALGRGRSVLVLAAYLLCK----DPDLTVEEVLQQIKQI 216 (547)
T ss_pred ceEEEeec-CCCCCC-cHHHHHHHHHHHHHHHHCCCeEEEECCCCCCcHHHHHHHHHHHh----ccCCCHHHHHHHHHHH
Confidence 45555543 366666 56777777777776655679999999999999999999988743 3468999999999999
Q ss_pred CCCCCCCHHHHHHHHHH
Q psy12349 136 RAHMVQSEAQYVYLYQS 152 (205)
Q Consensus 136 R~~~v~t~~Qy~fi~~~ 152 (205)
||.+..+..|...+...
T Consensus 217 Rp~v~~n~~q~~~l~~~ 233 (547)
T PRK12361 217 RKTARLNKRQLRALEKM 233 (547)
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 99999999988766543
No 29
>KOG1719|consensus
Probab=98.88 E-value=2.7e-08 Score=75.89 Aligned_cols=93 Identities=18% Similarity=0.311 Sum_probs=78.1
Q ss_pred EEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHH
Q psy12349 53 VLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDL 132 (205)
Q Consensus 53 ~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~l 132 (205)
...|.|+....-.-.+.| +.+.+...++.+.+...-++.+.|||.+|-|||+|+++|+++ ..+.+....++..+
T Consensus 73 ~~giE~L~i~T~D~~~~P-s~~~i~~aVeFi~k~asLGktvYVHCKAGRtRSaTvV~cYLm-----q~~~wtpe~A~~~v 146 (183)
T KOG1719|consen 73 NYGIEFLVIPTRDYTGAP-SLENIQKAVEFIHKNASLGKTVYVHCKAGRTRSATVVACYLM-----QHKNWTPEAAVEHV 146 (183)
T ss_pred hccceeEEeccccccCCC-CHHHHHHHHHHHHhccccCCeEEEEecCCCccchhhhhhhhh-----hhcCCCHHHHHHHH
Confidence 456888888655445566 688898888888888767889999999999999999999998 45688999999999
Q ss_pred HhhCCCCCCCHHHHHHHHH
Q psy12349 133 REQRAHMVQSEAQYVYLYQ 151 (205)
Q Consensus 133 R~~R~~~v~t~~Qy~fi~~ 151 (205)
|+.||..+--+.|+.-+-+
T Consensus 147 r~iRp~VlL~~~Qw~~l~e 165 (183)
T KOG1719|consen 147 RKIRPRVLLRPAQWDVLKE 165 (183)
T ss_pred HhcCcceeecHHHHHHHHH
Confidence 9999999999999865433
No 30
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=98.83 E-value=1.3e-08 Score=78.95 Aligned_cols=58 Identities=29% Similarity=0.400 Sum_probs=38.1
Q ss_pred EEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHH
Q psy12349 54 LEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLL 113 (205)
Q Consensus 54 ~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~ 113 (205)
+.+..+|| .+||.++| +...+.+++..+......+..|+|||.+|+||||+++|+.++
T Consensus 99 ~Gi~~~h~-PI~D~~aP-d~~~~~~i~~eL~~~L~~g~~V~vHC~GGlGRtGlvAAcLLl 156 (168)
T PF05706_consen 99 RGIAWHHL-PIPDGSAP-DFAAAWQILEELAARLENGRKVLVHCRGGLGRTGLVAACLLL 156 (168)
T ss_dssp TT-EEEE-----TTS----HHHHHHHHHHHHHHHHTT--EEEE-SSSSSHHHHHHHHHHH
T ss_pred cCCEEEec-CccCCCCC-CHHHHHHHHHHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHH
Confidence 44555566 58999999 467777777777766657899999999999999999998776
No 31
>PF03162 Y_phosphatase2: Tyrosine phosphatase family; InterPro: IPR004861 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents protein-tyrosine phosphatases predominantly from fungi, plants and bacteria, several of which are putative enzymes. These proteins are closely related to the Y-phosphatase and DSPc families. This entry includes the PTPase SIW14 from Saccharomyces cerevisiae (Baker's yeast), which plays a role in actin filament organisation and endocytosis.; PDB: 2Q47_A 1XRI_A.
Probab=98.39 E-value=1.1e-06 Score=68.80 Aligned_cols=73 Identities=16% Similarity=0.324 Sum_probs=45.1
Q ss_pred EEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHH
Q psy12349 54 LEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLR 133 (205)
Q Consensus 54 ~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR 133 (205)
-.+.|+....|.+...+.+.+.+.+.++.+... .+.||+|||..|..|||+++||.-.+ ..+++..++.++|
T Consensus 57 I~l~~~~~~~~~~~~~~~~~~~v~~aL~~ild~--~n~PvLiHC~~G~~rTG~vvg~lRk~------Q~W~~~~i~~Ey~ 128 (164)
T PF03162_consen 57 IKLIHIPMSSSKDPWVPISEEQVAEALEIILDP--RNYPVLIHCNHGKDRTGLVVGCLRKL------QGWSLSSIFDEYR 128 (164)
T ss_dssp -EEEE-------GGG----HHHHHHHHHHHH-G--GG-SEEEE-SSSSSHHHHHHHHHHHH------TTB-HHHHHHHHH
T ss_pred ceEEEeccccccCccccCCHHHHHHHHHHHhCC--CCCCEEEEeCCCCcchhhHHHHHHHH------cCCCHHHHHHHHH
Confidence 456666666666545566688888888876554 37899999999999999999986532 3678888888887
Q ss_pred h
Q psy12349 134 E 134 (205)
Q Consensus 134 ~ 134 (205)
.
T Consensus 129 ~ 129 (164)
T PF03162_consen 129 R 129 (164)
T ss_dssp H
T ss_pred H
Confidence 5
No 32
>KOG2283|consensus
Probab=98.25 E-value=1.7e-06 Score=77.00 Aligned_cols=86 Identities=27% Similarity=0.400 Sum_probs=66.5
Q ss_pred CCCCCCCCCCChHHHHHHHHHHHhhCC--CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhC---
Q psy12349 62 HDWQDFSIPGGPDVLVNFCHLVRNSTP--TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQR--- 136 (205)
Q Consensus 62 ~~Wpd~~~P~~~~~~~~~i~~v~~~~~--~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R--- 136 (205)
.+|+|+++| +.+.+..|.+.+..+.. +..-++|||.+|.||+|++++++++...+. ....+++..+-..|
T Consensus 78 ~~~~Dh~~P-~L~~l~~~c~~~~~WL~~d~~nVvvvHCk~Gkgrtg~~icA~L~~~~~~----~ta~eald~~~~kR~~~ 152 (434)
T KOG2283|consen 78 FGFDDHNPP-PLELLCPFCKSMDNWLSEDPKNVVVVHCKAGKGRTGVMICAYLIYSGIS----ATAEEALDYFNEKRFDE 152 (434)
T ss_pred cCCCCCCCC-cHHHHHHHHHCHHHHHhcCccceEEEEccCCCcceEEEEeHHHHhhhhc----CCHHHHHHHHhhhhccc
Confidence 589999998 57888888888888766 667899999999999999998888866543 23455555555556
Q ss_pred C--CCCCCHHHHHHHHHH
Q psy12349 137 A--HMVQSEAQYVYLYQS 152 (205)
Q Consensus 137 ~--~~v~t~~Qy~fi~~~ 152 (205)
. +.+..+.|.+|++..
T Consensus 153 ~~~~~~~~PSq~RYv~Y~ 170 (434)
T KOG2283|consen 153 GKSKGVTIPSQRRYVGYF 170 (434)
T ss_pred cccCCccCchhhHHHHHH
Confidence 3 457788999998764
No 33
>KOG1718|consensus
Probab=98.24 E-value=5.3e-06 Score=64.33 Aligned_cols=88 Identities=16% Similarity=0.179 Sum_probs=63.5
Q ss_pred EEEEEEEeCCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHH
Q psy12349 54 LEVKHFHLHDWQDFSIPGG-----PDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRT 128 (205)
Q Consensus 54 ~~v~h~~y~~Wpd~~~P~~-----~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~ 128 (205)
+.+.-++|..-|-.+.|.. .+.+.+.|..+.. .+|.++|||.+|++||+.+|.++++ +-...++.++
T Consensus 56 ~~l~~~qy~kv~~~D~p~~~l~~hfD~vAD~I~~v~~---~gG~TLvHC~AGVSRSAsLClAYLm-----K~~~msLreA 127 (198)
T KOG1718|consen 56 TSLPDIQYMKVPLEDTPQARLYDHFDPVADKIHSVIM---RGGKTLVHCVAGVSRSASLCLAYLM-----KYHCMSLREA 127 (198)
T ss_pred ccCCCceeEEEEcccCCcchhhhhhhHHHHHHHHHHh---cCCcEEEEEccccchhHHHHHHHHH-----HHccchHHHH
Confidence 4445556666554444432 3445555555555 6899999999999999999999998 4467899999
Q ss_pred HHHHHhhCCCCCCCHHHHHHH
Q psy12349 129 VLDLREQRAHMVQSEAQYVYL 149 (205)
Q Consensus 129 v~~lR~~R~~~v~t~~Qy~fi 149 (205)
-..++..||-.=.+..-|.-+
T Consensus 128 y~~vKa~RpiIRPN~GFw~QL 148 (198)
T KOG1718|consen 128 YHWVKARRPIIRPNVGFWRQL 148 (198)
T ss_pred HHHHHhhCceeCCCccHHHHH
Confidence 999999998877776544433
No 34
>KOG1716|consensus
Probab=98.03 E-value=4.6e-05 Score=64.66 Aligned_cols=63 Identities=21% Similarity=0.307 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHH
Q psy12349 74 DVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEA 144 (205)
Q Consensus 74 ~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~ 144 (205)
.....||..++. .++.|+|||.+|++||.+++.++++.. ..+++.++.+.++..|+.+..+..
T Consensus 142 ~~~~~fI~~a~~---~~~~vlVHC~~GvSRSat~viAYlM~~-----~~~~l~~A~~~vk~~R~~i~PN~g 204 (285)
T KOG1716|consen 142 PEAISFIEKARE---KGGKVLVHCQAGVSRSATLVIAYLMKY-----EGLSLEDAYELVKSRRPIISPNFG 204 (285)
T ss_pred HHHHHHHHHHHh---CCCeEEEEcCCccchhHHHHHHHHHHH-----cCCCHHHHHHHHHHhCCccCCCHH
Confidence 344555555555 789999999999999999999999844 578999999999999998866543
No 35
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=97.93 E-value=2e-05 Score=60.59 Aligned_cols=50 Identities=30% Similarity=0.537 Sum_probs=37.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHH
Q psy12349 63 DWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLL 114 (205)
Q Consensus 63 ~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~ 114 (205)
..+|+..| +++.+-.|+..++.. .....+++||.+|.|||.+|.+++.++
T Consensus 99 pitd~~~P-~~~~iD~fi~~v~~~-p~~~~l~fhC~~G~GRTTt~Mv~~~li 148 (149)
T PF14566_consen 99 PITDHQAP-DPEDIDAFINFVKSL-PKDTWLHFHCQAGRGRTTTFMVMYDLI 148 (149)
T ss_dssp EE-TTS----HHHHHHHHHHHHTS--TT-EEEEE-SSSSHHHHHHHHHHHHH
T ss_pred eCCCcCCC-CHHHHHHHHHHHHhC-CCCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46688777 588999999999987 367889999999999999998887664
No 36
>COG5350 Predicted protein tyrosine phosphatase [General function prediction only]
Probab=97.85 E-value=0.00013 Score=55.75 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=61.6
Q ss_pred EEEEEeCCCCCCC-CCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHh
Q psy12349 56 VKHFHLHDWQDFS-IPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLRE 134 (205)
Q Consensus 56 v~h~~y~~Wpd~~-~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~ 134 (205)
-.||+=+.-|+.+ ..+....+..++..++.+- ...|++|||..|+|||...+.+..+. -....+-.++.++||.
T Consensus 59 ~l~fnDI~~~~~g~~ap~e~Hv~~i~DF~~~wp-~~apllIHC~aGISRStA~A~i~a~a----la~~~de~ela~~Lra 133 (172)
T COG5350 59 TLHFNDIAEPDDGWIAPGEAHVRAIIDFADEWP-RFAPLLIHCYAGISRSTAAALIAALA----LAPDMDETELAERLRA 133 (172)
T ss_pred eEeeccccCCCccccCCCHHHHHHHHHHHhcCc-cccceeeeeccccccchHHHHHHHHh----hccccChHHHHHHHHh
Confidence 3445555666655 4456777877777777765 56899999999999998765542221 2356778899999999
Q ss_pred hCCCCCCCHHH
Q psy12349 135 QRAHMVQSEAQ 145 (205)
Q Consensus 135 ~R~~~v~t~~Q 145 (205)
.+|.+-.+..-
T Consensus 134 ~sp~atPN~Rl 144 (172)
T COG5350 134 LSPYATPNPRL 144 (172)
T ss_pred cCcccCCChhH
Confidence 99999777653
No 37
>KOG1717|consensus
Probab=97.81 E-value=4.7e-05 Score=63.17 Aligned_cols=61 Identities=15% Similarity=0.233 Sum_probs=45.2
Q ss_pred HHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCH
Q psy12349 78 NFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSE 143 (205)
Q Consensus 78 ~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~ 143 (205)
+.|..+..+...+.-|+|||-+|++||.|+++++++-. -.+++.++...++..+.++-.+.
T Consensus 239 EAIsfIdeArsk~cgvLVHClaGISRSvTvtvaYLMqk-----l~lslndAyd~Vk~kksnisPNF 299 (343)
T KOG1717|consen 239 EAISFIDEARSKNCGVLVHCLAGISRSVTVTVAYLMQK-----LNLSLNDAYDFVKHKKSNISPNF 299 (343)
T ss_pred HHHHHHHHhhccCCcEEEeeeccccchhHHHHHHHHHH-----hccchhhHHHHHHHhccCCCCCc
Confidence 33444444443788999999999999999999999844 35667777777877777776553
No 38
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=97.73 E-value=0.0002 Score=54.12 Aligned_cols=57 Identities=12% Similarity=0.147 Sum_probs=42.6
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCC
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAH 138 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~ 138 (205)
+...+..|...+.. ..+||++||..|. |||++.++.+.. ..++..++++..|..-..
T Consensus 71 ~~~~v~~f~~~~~~---~~~pvL~HC~sG~-Rt~~l~al~~~~------~g~~~~~i~~~~~~~G~~ 127 (135)
T TIGR01244 71 TPDDVETFRAAIGA---AEGPVLAYCRSGT-RSSLLWGFRQAA------EGVPVEEIVRRAQAAGYD 127 (135)
T ss_pred CHHHHHHHHHHHHh---CCCCEEEEcCCCh-HHHHHHHHHHHH------cCCCHHHHHHHHHHcCCC
Confidence 46667777777765 4699999999999 999988876553 247888888887765443
No 39
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=97.60 E-value=0.00013 Score=56.67 Aligned_cols=27 Identities=37% Similarity=0.471 Sum_probs=20.4
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIACDLLLQ 115 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai~~~~~ 115 (205)
..+|+++||.+|..|||+++|+.+.+-
T Consensus 123 ~~~p~l~HC~aGKDRTG~~~alll~~l 149 (164)
T PF13350_consen 123 APGPVLFHCTAGKDRTGVVAALLLSLL 149 (164)
T ss_dssp TT--EEEE-SSSSSHHHHHHHHHHHHT
T ss_pred CCCcEEEECCCCCccHHHHHHHHHHHc
Confidence 348999999999999999999877644
No 40
>PLN02727 NAD kinase
Probab=97.05 E-value=0.0012 Score=63.50 Aligned_cols=56 Identities=18% Similarity=0.222 Sum_probs=42.7
Q ss_pred EEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHH
Q psy12349 54 LEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLL 113 (205)
Q Consensus 54 ~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~ 113 (205)
..+.++|+.- .+.+.| +.+.+.+|...++.. ..+||++||..|.+|+|+++|+++.
T Consensus 309 ~GL~yVhIPV-s~~~ap-t~EqVe~fa~~l~~s--lpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 309 GKIEVVKIPV-EVRTAP-SAEQVEKFASLVSDS--SKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred cCCeEEEeec-CCCCCC-CHHHHHHHHHHHHhh--cCCCEEEECCCCCchHHHHHHHHHH
Confidence 3466666632 233334 688999999999443 4799999999999999999999987
No 41
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=96.97 E-value=0.0018 Score=47.29 Aligned_cols=36 Identities=17% Similarity=0.343 Sum_probs=28.6
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHH
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACD 111 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~ 111 (205)
+.+.+..|...+.. ..+||++||..|. |++++.++.
T Consensus 71 ~~~~v~~f~~~l~~---~~~Pvl~hC~sG~-Ra~~l~~l~ 106 (110)
T PF04273_consen 71 TEEDVEAFADALES---LPKPVLAHCRSGT-RASALWALA 106 (110)
T ss_dssp -HHHHHHHHHHHHT---TTTSEEEE-SCSH-HHHHHHHHH
T ss_pred CHHHHHHHHHHHHh---CCCCEEEECCCCh-hHHHHHHHH
Confidence 57888888888887 4689999999997 898887764
No 42
>COG2365 Protein tyrosine/serine phosphatase [Signal transduction mechanisms]
Probab=96.54 E-value=0.013 Score=48.71 Aligned_cols=42 Identities=29% Similarity=0.415 Sum_probs=31.4
Q ss_pred hHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHH
Q psy12349 73 PDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQC 116 (205)
Q Consensus 73 ~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~ 116 (205)
.+.+..++..+... .++||++||..|..|||+++|++..+..
T Consensus 121 ~e~~~~~~~l~~~~--e~~PvL~HC~~GkdRTGl~~al~r~~~~ 162 (249)
T COG2365 121 AERLVELLQLLADA--ENGPVLIHCTAGKDRTGLVAALYRKLVG 162 (249)
T ss_pred HHHHHHHHHHHhhc--ccCCEEEecCCCCcchHHHHHHHHHHhC
Confidence 44555555555552 2599999999999999999999877553
No 43
>KOG1572|consensus
Probab=96.25 E-value=0.065 Score=44.06 Aligned_cols=76 Identities=16% Similarity=0.145 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHHHHHHHHHhhCCCCCCCHHHHHHHHHH
Q psy12349 73 PDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQS 152 (205)
Q Consensus 73 ~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~ 152 (205)
...+...++.+... .+.|++|||.-|--|+|++++|.- .+.. +.+..++...+..-... -+..
T Consensus 133 ~~~i~~~l~~lld~--~N~P~Lihc~rGkhRtg~lVgclR---klq~---W~lssil~Ey~~fa~sk---------~r~~ 195 (249)
T KOG1572|consen 133 DHSIRKALKVLLDK--RNYPILIHCKRGKHRTGCLVGCLR---KLQN---WSLSSILDEYLRFAGSK---------GRRV 195 (249)
T ss_pred HHHHHHHHHHHhcc--cCCceEEecCCCCcchhhhHHHHH---HHhc---cchhHHHHHHHHhccch---------hHHH
Confidence 44555555543333 589999999999999999999744 3333 55555555554332222 2334
Q ss_pred HHHHHHcCCCccc
Q psy12349 153 IASALESSDTLKL 165 (205)
Q Consensus 153 vl~~i~~~~~l~~ 165 (205)
.+.|++.++....
T Consensus 196 d~~Fie~fd~~~~ 208 (249)
T KOG1572|consen 196 DLRFIEMFDTNPK 208 (249)
T ss_pred HHHHHHHhccccc
Confidence 4556666544433
No 44
>KOG4471|consensus
Probab=94.86 E-value=0.045 Score=50.33 Aligned_cols=59 Identities=24% Similarity=0.344 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHHHHH-H-----------hcC-----C---------------------cccHHHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIACDLLLQC-L-----------QHN-----R---------------------KLNIFRTVL 130 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai~~~~~~-l-----------~~~-----~---------------------~v~v~~~v~ 130 (205)
.+.||+|||++|=.||..++++.+++-. . +++ + -+-..+.+.
T Consensus 373 ~~~sVlVHCSDGWDRT~QlvsLA~LlLDpYYRTieGFqvLVEkeWLsFGHkFadRvGhg~ns~~~ndrsPVFLQwlDcV~ 452 (717)
T KOG4471|consen 373 ESRSVLVHCSDGWDRTAQLVSLAMLLLDPYYRTIEGFQVLVEKEWLSFGHKFADRVGHGNNSHGDNDRSPVFLQWLDCVW 452 (717)
T ss_pred CCceEEEEcCCCccchHHHHHHHHHHhchhhhhhhhhHHHHHHHHHhcCChhhhhcCCCCCcccccccCchhHHHHHHHH
Confidence 7889999999999999999887665321 0 000 0 012467788
Q ss_pred HHHhhCCCCCCCHHHHH
Q psy12349 131 DLREQRAHMVQSEAQYV 147 (205)
Q Consensus 131 ~lR~~R~~~v~t~~Qy~ 147 (205)
.|.+|-|.+++--++|.
T Consensus 453 Ql~rqfP~aFEFne~fL 469 (717)
T KOG4471|consen 453 QLMRQFPCAFEFNEAFL 469 (717)
T ss_pred HHHHhCCcccccCHHHH
Confidence 88888899988666543
No 45
>KOG2386|consensus
Probab=94.71 E-value=0.15 Score=45.10 Aligned_cols=89 Identities=20% Similarity=0.278 Sum_probs=63.6
Q ss_pred cEEEEEEEEeCCCCCCC-CCCChHHHHHHHHHHHhhCC----CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCCcccHH
Q psy12349 52 EVLEVKHFHLHDWQDFS-IPGGPDVLVNFCHLVRNSTP----TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIF 126 (205)
Q Consensus 52 ~~~~v~h~~y~~Wpd~~-~P~~~~~~~~~i~~v~~~~~----~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~~v~v~ 126 (205)
+.+.+.++.. .-+.++ +| +......|++.+..... .+.=|.|||-.|..|+|=+++.+++. ...+++.
T Consensus 83 ~~~g~~Y~K~-~c~g~~~vp-~~~~v~~fv~~v~~f~~~~~~~~~LI~vhcthG~NrtgyLI~~yL~~-----~~~~s~~ 155 (393)
T KOG2386|consen 83 EERGVKYLKR-NCPGRGVVP-RTELVDKFVKLVKGFVDDTKLDDELIGVHCTHGLNRTGYLICAYLAD-----VGGYSSS 155 (393)
T ss_pred cccceeEEEe-ccCCcccCC-CccchHHHHHHHHHHHhcccCCCCEEEEeCCCcccccceeeeeeeee-----ccCccHH
Confidence 3445554433 344444 55 45666677777766554 67789999999999999887777763 3458999
Q ss_pred HHHHHHHhhCCCCCCCHHHHH
Q psy12349 127 RTVLDLREQRAHMVQSEAQYV 147 (205)
Q Consensus 127 ~~v~~lR~~R~~~v~t~~Qy~ 147 (205)
++++.+-..|+..+.-..-+.
T Consensus 156 ~aik~f~~~r~~gi~k~dyi~ 176 (393)
T KOG2386|consen 156 EAIKRFADARPPGIEKQDYID 176 (393)
T ss_pred HHHHHHHHhCCCccCchHHHH
Confidence 999999999998886655443
No 46
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=90.87 E-value=0.48 Score=41.53 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=20.6
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIACDLLL 114 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai~~~~ 114 (205)
.+.+|+|||++|-.||..++++..++
T Consensus 230 ~~~~Vlvh~~dGwDrt~q~~sL~ql~ 255 (353)
T PF06602_consen 230 EGSSVLVHCSDGWDRTSQLSSLAQLL 255 (353)
T ss_dssp T--EEEEECTTSSSHHHHHHHHHHHH
T ss_pred cCceEEEEcCCCCcccHHHHHHHHHH
Confidence 67899999999999999988765543
No 47
>KOG1089|consensus
Probab=87.46 E-value=1 Score=41.72 Aligned_cols=58 Identities=24% Similarity=0.310 Sum_probs=39.6
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHHHH------------HHhc------------CCcc---------------cHHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIACDLLLQ------------CLQH------------NRKL---------------NIFRTV 129 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai~~~~~------------~l~~------------~~~v---------------~v~~~v 129 (205)
.+.+|+|||++|-.||..++.+.-++- .+++ .+.+ -+.+.+
T Consensus 343 ~~~sVlvhcsdGwDrT~qV~SLaQllLDP~yRTi~GFqsLIeKeWi~~GH~F~~Rc~hl~~~~~~~ke~SPvF~qFLDcv 422 (573)
T KOG1089|consen 343 EGASVLVHCSDGWDRTCQVSSLAQLLLDPYYRTIKGFQSLIEKEWISFGHKFLDRCGHLAYNDGDSKEESPVFLQFLDCV 422 (573)
T ss_pred CCCeEEEEccCCcchhHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHcCCcHHHhcCCcccccCCCcccCcHHHHHHHHH
Confidence 458999999999999999887654321 0110 0011 156788
Q ss_pred HHHHhhCCCCCCCHHHH
Q psy12349 130 LDLREQRAHMVQSEAQY 146 (205)
Q Consensus 130 ~~lR~~R~~~v~t~~Qy 146 (205)
..|-.|.|.+++--+.|
T Consensus 423 wQl~~QfP~~FEFne~f 439 (573)
T KOG1089|consen 423 WQLLEQFPCAFEFNERF 439 (573)
T ss_pred HHHHhhCCcceehhHHH
Confidence 88889999998766554
No 48
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.56 E-value=5.4 Score=29.58 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=22.9
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCCCCc
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSAGVG 102 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~G~g 102 (205)
+...+..|...+.. ..+||+.||+.|.-
T Consensus 72 T~~dV~~f~~Al~e---aegPVlayCrsGtR 99 (130)
T COG3453 72 TEADVEAFQRALDE---AEGPVLAYCRSGTR 99 (130)
T ss_pred CHHHHHHHHHHHHH---hCCCEEeeecCCch
Confidence 57788888888888 47999999998743
No 49
>PLN02160 thiosulfate sulfurtransferase
Probab=69.40 E-value=9.1 Score=28.56 Aligned_cols=18 Identities=22% Similarity=0.366 Sum_probs=14.0
Q ss_pred CCCcEEEEcCCCCchhhHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f 107 (205)
...||+++|..| .||...
T Consensus 80 ~~~~IivyC~sG-~RS~~A 97 (136)
T PLN02160 80 PADDILVGCQSG-ARSLKA 97 (136)
T ss_pred CCCcEEEECCCc-HHHHHH
Confidence 568999999987 677643
No 50
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=65.66 E-value=6.3 Score=27.31 Aligned_cols=18 Identities=17% Similarity=0.316 Sum_probs=14.0
Q ss_pred CCCcEEEEcCCCCchhhHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f 107 (205)
...||+|+|..| .||...
T Consensus 60 ~~~~ivvyC~~G-~rs~~a 77 (101)
T cd01518 60 KGKKVLMYCTGG-IRCEKA 77 (101)
T ss_pred CCCEEEEECCCc-hhHHHH
Confidence 568999999876 677654
No 51
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=64.43 E-value=14 Score=26.40 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=21.0
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHH
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIA 109 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~a 109 (205)
+.+.+.+++..... ....||+|+|..| |+.+..++
T Consensus 63 ~~~~~~~~~~~~~~--~~~~~vv~~c~~g-~~~a~~~~ 97 (122)
T cd01448 63 SPEEFAELLGSLGI--SNDDTVVVYDDGG-GFFAARAW 97 (122)
T ss_pred CHHHHHHHHHHcCC--CCCCEEEEECCCC-CccHHHHH
Confidence 35666666543321 1578999999998 44444333
No 52
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=64.15 E-value=8.2 Score=26.62 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=13.2
Q ss_pred CCCcEEEEcCCCCchhhH
Q psy12349 89 TSQLSVVHCSAGVGRTGT 106 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~ 106 (205)
...||+|+|..| +||..
T Consensus 60 ~~~~ivv~C~~G-~rs~~ 76 (100)
T cd01523 60 DDQEVTVICAKE-GSSQF 76 (100)
T ss_pred CCCeEEEEcCCC-CcHHH
Confidence 568999999988 46654
No 53
>PF02061 Lambda_CIII: Lambda Phage CIII; InterPro: IPR013056 Bacteriophage lambda regulatory protein CIII is a small protein that plays a role in stabilising the CII transcriptional activator, via a mechanism that is not yet fully understood [, ]. Stabilised CII activates CI, the gene for the repressor protein that prevents transcription of proteins required for lytic development. The central portion of the protein is well conserved and is both necessary and sufficient for the activity of the protein []. Comparative analysis of the CIII sequence in lambda, Bacteriophage HK022 and the lambdoid Enterobacteria phage P22 has led to the suggestion that this central region assumes an amphipathic alpha-helical structure []. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=60.22 E-value=15 Score=21.76 Aligned_cols=25 Identities=12% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEeCCCCCCCCCCChHHHHHHHHH
Q psy12349 58 HFHLHDWQDFSIPGGPDVLVNFCHL 82 (205)
Q Consensus 58 h~~y~~Wpd~~~P~~~~~~~~~i~~ 82 (205)
+|++.+||-.++|.-.+++++.|..
T Consensus 2 ~~~~AG~~~~G~~ql~ESLLdrItR 26 (45)
T PF02061_consen 2 QYAIAGWPRMGCPQLSESLLDRITR 26 (45)
T ss_pred eeeecCccccCCchhhHHHHHHHHH
Confidence 5889999999999767777776643
No 54
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=56.90 E-value=13 Score=26.06 Aligned_cols=16 Identities=25% Similarity=0.368 Sum_probs=12.4
Q ss_pred CCCcEEEEcCCCCchhh
Q psy12349 89 TSQLSVVHCSAGVGRTG 105 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG 105 (205)
...||+|+|..|. ||.
T Consensus 65 ~~~~ivv~C~~G~-rs~ 80 (109)
T cd01533 65 PRTPIVVNCAGRT-RSI 80 (109)
T ss_pred CCCeEEEECCCCc-hHH
Confidence 3679999999885 664
No 55
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=54.43 E-value=10 Score=31.90 Aligned_cols=16 Identities=19% Similarity=0.430 Sum_probs=12.1
Q ss_pred CCCcEEEEcCCCCchh
Q psy12349 89 TSQLSVVHCSAGVGRT 104 (205)
Q Consensus 89 ~~~pivVHC~~G~gRs 104 (205)
...||+++|..|..-+
T Consensus 230 ~~~~ii~yC~~G~~A~ 245 (281)
T PRK11493 230 FDRPIIASCGSGVTAA 245 (281)
T ss_pred CCCCEEEECCcHHHHH
Confidence 5679999998876433
No 56
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=50.87 E-value=19 Score=24.46 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=12.7
Q ss_pred cEEEEcCCCCchhhHHHH
Q psy12349 92 LSVVHCSAGVGRTGTYIA 109 (205)
Q Consensus 92 pivVHC~~G~gRsG~f~a 109 (205)
.|++.|..|.| |+++++
T Consensus 2 kilvvCg~G~g-tS~ml~ 18 (87)
T cd05567 2 KIVFACDAGMG-SSAMGA 18 (87)
T ss_pred EEEEECCCCcc-HHHHHH
Confidence 58999999999 444433
No 57
>PRK10678 moaE molybdopterin guanine dinucleotide biosynthesis protein MoaE; Provisional
Probab=49.81 E-value=78 Score=24.31 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=48.3
Q ss_pred cEEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC--------------CCCcEEEEcCCCCchhhHHHHHHHHHHHH
Q psy12349 52 EVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP--------------TSQLSVVHCSAGVGRTGTYIACDLLLQCL 117 (205)
Q Consensus 52 ~~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~--------------~~~pivVHC~~G~gRsG~f~ai~~~~~~l 117 (205)
+.+.|..+.|...|.. ....+..+...+..... .+.++++-.-.+..|..+|-|+..+++.+
T Consensus 43 ~g~~V~~L~yeay~~m----a~k~l~~I~~ea~~~~~~~~v~i~HR~G~l~~Ge~~v~Vav~s~HR~~Af~A~~~~id~l 118 (150)
T PRK10678 43 LGDSVKALTLEHYPGM----TEKALAEIVDEARSRWPLGRVTVIHRVGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYL 118 (150)
T ss_pred CCCceeEEEEEecCcH----HHHHHHHHHHHHHHhCCCCcEEEEEeEecccCCCEEEEEEEECCCHHHHHHHHHHHHHHH
Confidence 3567888999776643 35677777777777543 45666666677888999999999999988
Q ss_pred hcC
Q psy12349 118 QHN 120 (205)
Q Consensus 118 ~~~ 120 (205)
+..
T Consensus 119 K~~ 121 (150)
T PRK10678 119 KTR 121 (150)
T ss_pred hhc
Confidence 754
No 58
>PF04179 Init_tRNA_PT: Initiator tRNA phosphoribosyl transferase ; InterPro: IPR007306 This enzyme (2.4.2 from EC) modifies exclusively the initiator tRNA in position 64 using 5'-phosphoribosyl-1'-pyrophosphate as the modification donor. As the initiator tRNA participates both in the initiation and elongation of translation, the 2'-O-ribosyl phosphate modification discriminates the initiator tRNAs from the elongator tRNAs. ; GO: 0016763 transferase activity, transferring pentosyl groups
Probab=49.72 E-value=37 Score=30.86 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=19.6
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIACDLL 113 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai~~~ 113 (205)
.+.+|+|+|..|...|..++.+.++
T Consensus 375 ~~~~iLV~C~sGkDlSVgVaLaILc 399 (451)
T PF04179_consen 375 PGKPILVCCDSGKDLSVGVALAILC 399 (451)
T ss_pred CCCcEEEEcCCcchHHHHHHHHHHH
Confidence 3789999999998888776665554
No 59
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=48.46 E-value=19 Score=24.88 Aligned_cols=16 Identities=38% Similarity=0.673 Sum_probs=12.7
Q ss_pred CCCcEEEEcCCCCchhh
Q psy12349 89 TSQLSVVHCSAGVGRTG 105 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG 105 (205)
...+++|+|..|. ||+
T Consensus 60 ~~~~ivv~C~~G~-rS~ 75 (110)
T COG0607 60 DDDPIVVYCASGV-RSA 75 (110)
T ss_pred CCCeEEEEeCCCC-ChH
Confidence 5789999999884 454
No 60
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=46.34 E-value=21 Score=25.88 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCCchhhHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIA 109 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~a 109 (205)
...+|+|||..+..||...+.
T Consensus 67 ~~~~vv~yC~~sg~rs~~aa~ 87 (121)
T cd01530 67 KRRVLIFHCEFSSKRGPRMAR 87 (121)
T ss_pred CCCEEEEECCCccccHHHHHH
Confidence 578999999844466665433
No 61
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=45.85 E-value=27 Score=25.90 Aligned_cols=28 Identities=18% Similarity=0.266 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhCC-CCCcEEEEcCCCCc
Q psy12349 75 VLVNFCHLVRNSTP-TSQLSVVHCSAGVG 102 (205)
Q Consensus 75 ~~~~~i~~v~~~~~-~~~pivVHC~~G~g 102 (205)
.+-.+...+..... ..+.++|||++..+
T Consensus 80 aI~~va~~La~~~~~~~g~iVvHtSGa~~ 108 (127)
T PF10727_consen 80 AIAEVAEQLAQYGAWRPGQIVVHTSGALG 108 (127)
T ss_dssp HHHHHHHHHHCC--S-TT-EEEES-SS--
T ss_pred HHHHHHHHHHHhccCCCCcEEEECCCCCh
Confidence 56667777766411 36899999998776
No 62
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=44.91 E-value=25 Score=27.05 Aligned_cols=18 Identities=17% Similarity=0.061 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCCchhhH
Q psy12349 89 TSQLSVVHCSAGVGRTGT 106 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~ 106 (205)
.+.|||+.|..|..||..
T Consensus 115 ~d~~IVvYC~~G~~~S~~ 132 (162)
T TIGR03865 115 KDRPLVFYCLADCWMSWN 132 (162)
T ss_pred CCCEEEEEECCCCHHHHH
Confidence 578999999988877775
No 63
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=42.48 E-value=27 Score=23.80 Aligned_cols=17 Identities=12% Similarity=0.108 Sum_probs=12.7
Q ss_pred CCCcEEEEcCCCCchhhH
Q psy12349 89 TSQLSVVHCSAGVGRTGT 106 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~ 106 (205)
...+|+|+|..| +|+..
T Consensus 55 ~~~~ivv~c~~g-~~s~~ 71 (96)
T cd01529 55 RATRYVLTCDGS-LLARF 71 (96)
T ss_pred CCCCEEEEeCCh-HHHHH
Confidence 578999999865 56654
No 64
>TIGR02764 spore_ybaN_pdaB polysaccharide deacetylase family sporulation protein PdaB. This model describes the YbaN protein family, also called PdaB and SpoVIE, of Gram-positive bacteria. Although ybaN null mutants have only a mild sporulation defect, ybaN/ytrI double mutants show drastically reducted sporulation efficiencies. This synthetic defect suggests the role of this sigmaE-controlled gene in sporulation had been masked by functional redundancy. Members of this family are homologous to a characterized polysaccharide deacetylase; the exact function this protein family is unknown.
Probab=42.43 E-value=70 Score=24.83 Aligned_cols=31 Identities=16% Similarity=0.205 Sum_probs=21.9
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHHHHHHhcCC
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNR 121 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~ 121 (205)
++.-|++|+. -++..+.-++..++..++..+
T Consensus 151 ~g~Iil~Hd~--~~~~~t~~~l~~~i~~l~~~G 181 (191)
T TIGR02764 151 PGDIILLHAS--DSAKQTVKALPTIIKKLKEKG 181 (191)
T ss_pred CCCEEEEeCC--CCcHhHHHHHHHHHHHHHHCC
Confidence 4556889983 456777777777777776655
No 65
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=41.85 E-value=61 Score=23.12 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=13.4
Q ss_pred CCCcEEEEcCCCCchhhHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f 107 (205)
...+|+|+|..| .||...
T Consensus 63 ~~~~ivv~C~~G-~rs~~a 80 (117)
T cd01522 63 KDRPVLLLCRSG-NRSIAA 80 (117)
T ss_pred CCCeEEEEcCCC-ccHHHH
Confidence 568999999887 456543
No 66
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=41.81 E-value=65 Score=23.33 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCCchhhHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYI 108 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ 108 (205)
...+|+|.|..|..||...+
T Consensus 85 ~~~~vvvyC~~~G~rs~~a~ 104 (128)
T cd01520 85 RDPKLLIYCARGGMRSQSLA 104 (128)
T ss_pred CCCeEEEEeCCCCccHHHHH
Confidence 57899999986666776544
No 67
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=41.77 E-value=39 Score=22.88 Aligned_cols=21 Identities=19% Similarity=0.015 Sum_probs=14.0
Q ss_pred CCCcEEEEcCCCCchhhHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIA 109 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~a 109 (205)
...||+|.|..|...+...++
T Consensus 49 ~~~~ivl~c~~G~~~~s~~aa 69 (92)
T cd01532 49 RDTPIVVYGEGGGEDLAPRAA 69 (92)
T ss_pred CCCeEEEEeCCCCchHHHHHH
Confidence 367999999987543333333
No 68
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=40.83 E-value=61 Score=22.95 Aligned_cols=18 Identities=22% Similarity=0.469 Sum_probs=12.9
Q ss_pred CCCcEEEEcCCCCchhhHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f 107 (205)
...+|+++|..| .||...
T Consensus 59 ~~~~IVlyC~~G-~rS~~a 76 (104)
T PRK10287 59 KNDTVKLYCNAG-RQSGQA 76 (104)
T ss_pred CCCeEEEEeCCC-hHHHHH
Confidence 457899999877 555543
No 69
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=39.66 E-value=29 Score=24.92 Aligned_cols=17 Identities=24% Similarity=0.292 Sum_probs=13.4
Q ss_pred CCCcEEEEcCCCCchhhH
Q psy12349 89 TSQLSVVHCSAGVGRTGT 106 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~ 106 (205)
...||+|+|..|. |+..
T Consensus 71 ~~~~ivv~C~~G~-rs~~ 87 (122)
T cd01526 71 KDSPIYVVCRRGN-DSQT 87 (122)
T ss_pred CCCcEEEECCCCC-cHHH
Confidence 5789999999884 6653
No 70
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=39.36 E-value=33 Score=23.59 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=12.7
Q ss_pred CCCcEEEEcCCCCchhhH
Q psy12349 89 TSQLSVVHCSAGVGRTGT 106 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~ 106 (205)
...+|+|+|..|. |+..
T Consensus 65 ~~~~ivv~c~~g~-~s~~ 81 (106)
T cd01519 65 KDKELIFYCKAGV-RSKA 81 (106)
T ss_pred CCCeEEEECCCcH-HHHH
Confidence 4689999999874 5543
No 71
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=39.21 E-value=29 Score=23.31 Aligned_cols=13 Identities=31% Similarity=0.767 Sum_probs=10.8
Q ss_pred cEEEEcCCCCchh
Q psy12349 92 LSVVHCSAGVGRT 104 (205)
Q Consensus 92 pivVHC~~G~gRs 104 (205)
.|++-|.+|+|=|
T Consensus 1 kIlvvC~~Gi~TS 13 (90)
T PF02302_consen 1 KILVVCGSGIGTS 13 (90)
T ss_dssp EEEEEESSSSHHH
T ss_pred CEEEECCChHHHH
Confidence 3799999999944
No 72
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=38.81 E-value=28 Score=24.62 Aligned_cols=19 Identities=21% Similarity=0.415 Sum_probs=14.1
Q ss_pred CCCcEEEEcCCCCchhhHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f 107 (205)
...+|+++|..|..|+...
T Consensus 65 ~~~~iv~~C~~~g~rs~~a 83 (113)
T cd01443 65 GVKLAIFYCGSSQGRGPRA 83 (113)
T ss_pred CCCEEEEECCCCCcccHHH
Confidence 3578999999876776543
No 73
>PLN02390 molybdopterin synthase catalytic subunit
Probab=38.37 E-value=99 Score=22.41 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=47.1
Q ss_pred EEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC--------------CCCcEEEEcCCCCchhhHHHHHHHHHHHHh
Q psy12349 53 VLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP--------------TSQLSVVHCSAGVGRTGTYIACDLLLQCLQ 118 (205)
Q Consensus 53 ~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~--------------~~~pivVHC~~G~gRsG~f~ai~~~~~~l~ 118 (205)
-+.|..+.|..++ |.....+.++...+..... .+.++++-.-.+..|.-+|-|+..+++.++
T Consensus 20 g~~V~~L~yeay~----~ma~~~l~~I~~e~~~~~~~~~v~i~HR~G~l~vge~~v~v~v~s~HR~~Af~A~~~~id~lK 95 (111)
T PLN02390 20 GKTVLELRYEAYV----PMALRELRKICDEARSRWSLHKIAVAHRLGPVPVGETSVFVAVSSVHRADALDACKFLIDELK 95 (111)
T ss_pred CCcEeeEEEEEcH----HHHHHHHHHHHHHHHHhCCCceEEEEEeeecccCCCEEEEEEEECCCHHHHHHHHHHHHHHHh
Confidence 4567888886654 2245677777777777643 455666666678889999999999999987
Q ss_pred cCC
Q psy12349 119 HNR 121 (205)
Q Consensus 119 ~~~ 121 (205)
..-
T Consensus 96 ~~v 98 (111)
T PLN02390 96 ASV 98 (111)
T ss_pred hcC
Confidence 653
No 74
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=38.23 E-value=52 Score=24.13 Aligned_cols=34 Identities=9% Similarity=0.129 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHH
Q psy12349 74 DVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 74 ~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f 107 (205)
..+..+.+.+......+.||+|..-.|.|++-+.
T Consensus 5 ~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 5 PAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp HHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHH
Confidence 4455666666666557899999999999998643
No 75
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=37.14 E-value=1.3e+02 Score=22.14 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=47.6
Q ss_pred EEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC--------------CCCcEEEEcCCCCchhhHHHHHHHHHHHHh
Q psy12349 53 VLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP--------------TSQLSVVHCSAGVGRTGTYIACDLLLQCLQ 118 (205)
Q Consensus 53 ~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~--------------~~~pivVHC~~G~gRsG~f~ai~~~~~~l~ 118 (205)
.+.|..+.|..-+ |.....+..+...+.+... .+.++++-.-.+..|.-+|-|+..+++.++
T Consensus 31 ~~~v~~L~ye~y~----~ma~~~l~~I~~e~~~k~~~~~v~v~HR~G~l~vGe~~v~i~v~a~hR~~af~A~~~~id~lK 106 (124)
T cd00756 31 GKGVEALEYEAYP----PMAEKELEEIAEEARERWGLLRVAIIHRVGRLPPGEAIVLVAVSSPHRKEAFEACEFLIDRLK 106 (124)
T ss_pred CCcEeEEEEEECc----hHHHHHHHHHHHHHHHhCCCceEEEEEEEcccCCCCEEEEEEEecCCHHHHHHHHHHHHHHHH
Confidence 4667778885533 2346777788888777643 456766666778889999999999999997
Q ss_pred cCC
Q psy12349 119 HNR 121 (205)
Q Consensus 119 ~~~ 121 (205)
..-
T Consensus 107 ~~~ 109 (124)
T cd00756 107 HRA 109 (124)
T ss_pred hhC
Confidence 654
No 76
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=37.05 E-value=34 Score=23.30 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=12.2
Q ss_pred CCCcEEEEcCCCCchhh
Q psy12349 89 TSQLSVVHCSAGVGRTG 105 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG 105 (205)
...||+|+|..| .|+.
T Consensus 60 ~~~~ivv~c~~g-~~s~ 75 (103)
T cd01447 60 EDKPFVFYCASG-WRSA 75 (103)
T ss_pred CCCeEEEEcCCC-CcHH
Confidence 578999999876 4553
No 77
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=36.72 E-value=51 Score=23.16 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=12.6
Q ss_pred CCCcEEEEcCCCCchhhH
Q psy12349 89 TSQLSVVHCSAGVGRTGT 106 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~ 106 (205)
...+||++|..| .|+..
T Consensus 77 ~~~~iv~yc~~g-~~s~~ 93 (118)
T cd01449 77 PDKPVIVYCGSG-VTACV 93 (118)
T ss_pred CCCCEEEECCcH-HHHHH
Confidence 577999999876 35544
No 78
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=36.70 E-value=41 Score=23.07 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCCchhhHHHH
Q psy12349 90 SQLSVVHCSAGVGRTGTYIA 109 (205)
Q Consensus 90 ~~pivVHC~~G~gRsG~f~a 109 (205)
..+|+|+|..|. |++.++.
T Consensus 65 ~~~vv~~c~~g~-~s~~~a~ 83 (105)
T cd01525 65 GKIIVIVSHSHK-HAALFAA 83 (105)
T ss_pred CCeEEEEeCCCc-cHHHHHH
Confidence 579999998875 5655433
No 79
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=34.51 E-value=2.1e+02 Score=22.99 Aligned_cols=44 Identities=11% Similarity=0.035 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHhhCC-CCCcEEEEcCCCCchhhHHHHHHHHHHH
Q psy12349 73 PDVLVNFCHLVRNSTP-TSQLSVVHCSAGVGRTGTYIACDLLLQC 116 (205)
Q Consensus 73 ~~~~~~~i~~v~~~~~-~~~pivVHC~~G~gRsG~f~ai~~~~~~ 116 (205)
-......+..+..... ...|++|++..|+|.|-.+.|+.-.+..
T Consensus 16 N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~ 60 (219)
T PF00308_consen 16 NELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQK 60 (219)
T ss_dssp THHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 4444555555544322 3458999999999999998887655443
No 80
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=34.31 E-value=1.2e+02 Score=23.39 Aligned_cols=37 Identities=8% Similarity=0.123 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHH
Q psy12349 73 PDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIA 109 (205)
Q Consensus 73 ~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~a 109 (205)
...+.++++.++.......||+|..-.|.|++-+--+
T Consensus 5 s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~ 41 (168)
T PF00158_consen 5 SPAMKRLREQAKRAASSDLPVLITGETGTGKELLARA 41 (168)
T ss_dssp SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHH
Confidence 4567778888888777789999999999999865333
No 81
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=33.71 E-value=86 Score=20.88 Aligned_cols=16 Identities=25% Similarity=0.432 Sum_probs=11.8
Q ss_pred CCCcEEEEcCCCCchhh
Q psy12349 89 TSQLSVVHCSAGVGRTG 105 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG 105 (205)
...||+|+|..| .|+.
T Consensus 55 ~~~~ivv~c~~g-~~s~ 70 (96)
T cd01444 55 RDRPVVVYCYHG-NSSA 70 (96)
T ss_pred CCCCEEEEeCCC-ChHH
Confidence 578999999955 3443
No 82
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=33.62 E-value=54 Score=22.43 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=12.8
Q ss_pred CCCcEEEEcCCCCchhhH
Q psy12349 89 TSQLSVVHCSAGVGRTGT 106 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~ 106 (205)
...|+++.|..| .||..
T Consensus 57 ~~~~vv~~c~~g-~rs~~ 73 (101)
T cd01528 57 PDKDIVVLCHHG-GRSMQ 73 (101)
T ss_pred CCCeEEEEeCCC-chHHH
Confidence 468999999987 46643
No 83
>KOG0208|consensus
Probab=32.40 E-value=1.3e+02 Score=30.38 Aligned_cols=59 Identities=25% Similarity=0.265 Sum_probs=47.4
Q ss_pred CCcEEEEcCCCCchhhHHHHHHHHHHHHhcCC---------cccHHHHHHHHHhhCCCCCCCHHHHHH
Q psy12349 90 SQLSVVHCSAGVGRTGTYIACDLLLQCLQHNR---------KLNIFRTVLDLREQRAHMVQSEAQYVY 148 (205)
Q Consensus 90 ~~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~---------~v~v~~~v~~lR~~R~~~v~t~~Qy~f 148 (205)
-+-.+-.|.||..=+|++=|++..+..-+.+- ..++..+..-+|..|...|.+..=+.|
T Consensus 851 l~y~VgfCGDGANDCgALKaAdvGISLSeaEASvAApFTSk~~~I~cVp~vIrEGRaALVTSf~~FkY 918 (1140)
T KOG0208|consen 851 LGYKVGFCGDGANDCGALKAADVGISLSEAEASVAAPFTSKTPSISCVPDVIREGRAALVTSFACFKY 918 (1140)
T ss_pred cCcEEEecCCCcchhhhhhhcccCcchhhhhHhhcCccccCCCchhhHhHHHhhhhhhhhhhHHHHHH
Confidence 47889999999999999999998877655443 356778888889999999988765544
No 84
>COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair]
Probab=31.42 E-value=52 Score=27.53 Aligned_cols=27 Identities=11% Similarity=0.160 Sum_probs=19.3
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCCCC
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSAGV 101 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~G~ 101 (205)
....|..+++.+++ .+.|++|||++..
T Consensus 110 Q~~~F~~ql~lA~~---~~lPviIH~R~A~ 136 (256)
T COG0084 110 QEEVFEAQLELAKE---LNLPVIIHTRDAH 136 (256)
T ss_pred HHHHHHHHHHHHHH---cCCCEEEEccccH
Confidence 34566666666666 5799999998743
No 85
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=31.39 E-value=2.8e+02 Score=23.14 Aligned_cols=85 Identities=8% Similarity=0.039 Sum_probs=47.8
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCC--CCchhhHHHHHHHHHHHHh--------cCCcccHHHHHHHHHhhCCCCCC
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSA--GVGRTGTYIACDLLLQCLQ--------HNRKLNIFRTVLDLREQRAHMVQ 141 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~--G~gRsG~f~ai~~~~~~l~--------~~~~v~v~~~v~~lR~~R~~~v~ 141 (205)
.|..+.+++..+++.. +.|+-+||.+ |.+-+-+++|+......+. ..+..+..+++..|+..-...=-
T Consensus 176 ~P~~v~~lv~~l~~~~--~~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~~aGN~~~E~l~~~L~~~g~~~~~ 253 (275)
T cd07937 176 TPYAAYELVKALKKEV--GLPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGGTSQPSTESMVAALRGTGRDTGL 253 (275)
T ss_pred CHHHHHHHHHHHHHhC--CCeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccCCcCChhHHHHHHHHHccCCCCCC
Confidence 3555666666666543 3789999975 5555555666655433332 22356788888888764111112
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy12349 142 SEAQYVYLYQSIASALE 158 (205)
Q Consensus 142 t~~Qy~fi~~~vl~~i~ 158 (205)
+.++..-+.+.+.++.+
T Consensus 254 dl~~l~~~~~~v~~~~~ 270 (275)
T cd07937 254 DLEKLEEISEYFEEVRK 270 (275)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 34555555555555443
No 86
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=31.03 E-value=59 Score=22.85 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=13.2
Q ss_pred CCCcEEEEcCCCCchhhHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f 107 (205)
...+|+|+|..| .||...
T Consensus 57 ~~~~vvlyC~~G-~rS~~a 74 (101)
T TIGR02981 57 KNDTVKLYCNAG-RQSGMA 74 (101)
T ss_pred CCCeEEEEeCCC-HHHHHH
Confidence 457899999987 466554
No 87
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=30.87 E-value=68 Score=21.75 Aligned_cols=13 Identities=23% Similarity=0.705 Sum_probs=10.8
Q ss_pred CCCcEEEEcCCCC
Q psy12349 89 TSQLSVVHCSAGV 101 (205)
Q Consensus 89 ~~~pivVHC~~G~ 101 (205)
...+|+++|..|.
T Consensus 53 ~~~~iv~~c~~g~ 65 (99)
T cd01527 53 GANAIIFHCRSGM 65 (99)
T ss_pred CCCcEEEEeCCCc
Confidence 5689999999873
No 88
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=30.49 E-value=86 Score=23.51 Aligned_cols=12 Identities=17% Similarity=0.490 Sum_probs=10.2
Q ss_pred CCCcEEEEcCCC
Q psy12349 89 TSQLSVVHCSAG 100 (205)
Q Consensus 89 ~~~pivVHC~~G 100 (205)
...||||+|..|
T Consensus 48 ~~~~vVv~c~~g 59 (145)
T cd01535 48 AAERYVLTCGSS 59 (145)
T ss_pred CCCCEEEEeCCC
Confidence 468999999885
No 89
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=29.60 E-value=1.2e+02 Score=26.18 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhhCC--CCCcEEEEcCCCCchhhH
Q psy12349 74 DVLVNFCHLVRNSTP--TSQLSVVHCSAGVGRTGT 106 (205)
Q Consensus 74 ~~~~~~i~~v~~~~~--~~~pivVHC~~G~gRsG~ 106 (205)
..+.++...+..... ...||+|+|..| .|+..
T Consensus 153 ~~~~~~~~~l~~~~~~~kdk~IvvyC~~G-~Rs~~ 186 (314)
T PRK00142 153 ETFREFPPWVEENLDPLKDKKVVMYCTGG-IRCEK 186 (314)
T ss_pred HHhhhhHHHHHHhcCCCCcCeEEEECCCC-cHHHH
Confidence 344444444432221 568999999876 55654
No 90
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=29.27 E-value=71 Score=22.31 Aligned_cols=18 Identities=22% Similarity=0.220 Sum_probs=13.1
Q ss_pred CCCcEEEEcCCCCc-hhhH
Q psy12349 89 TSQLSVVHCSAGVG-RTGT 106 (205)
Q Consensus 89 ~~~pivVHC~~G~g-RsG~ 106 (205)
...||+|.|..|.. |+..
T Consensus 63 ~~~~vvvyc~~g~~~~s~~ 81 (110)
T cd01521 63 KEKLFVVYCDGPGCNGATK 81 (110)
T ss_pred CCCeEEEEECCCCCchHHH
Confidence 57899999988753 4443
No 91
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=29.10 E-value=1.6e+02 Score=23.30 Aligned_cols=40 Identities=18% Similarity=0.057 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHHHH
Q psy12349 74 DVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLL 113 (205)
Q Consensus 74 ~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~~~ 113 (205)
..+...+..+........|++++...|+|+|-...++...
T Consensus 26 ~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~ 65 (227)
T PRK08903 26 AELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVAD 65 (227)
T ss_pred HHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 3444555554332225679999999999999877666443
No 92
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=29.01 E-value=1.2e+02 Score=26.18 Aligned_cols=35 Identities=17% Similarity=0.159 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHH
Q psy12349 76 LVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIAC 110 (205)
Q Consensus 76 ~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai 110 (205)
+-+++..+.........|+|+|..|..||+..+.+
T Consensus 60 l~~~i~~~~~~~~~~~~vvvyC~~gG~RS~~aa~~ 94 (311)
T TIGR03167 60 LAAHVEQWRAFADGPPQPLLYCWRGGMRSGSLAWL 94 (311)
T ss_pred HHHHHHHHHhhcCCCCcEEEEECCCChHHHHHHHH
Confidence 34445554443323334999998777888876543
No 93
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=28.72 E-value=75 Score=29.07 Aligned_cols=41 Identities=15% Similarity=0.171 Sum_probs=28.9
Q ss_pred HHHHHHHHhhCCCCCcEEEEc---CCCCchhhHHHHHHHHHHHH
Q psy12349 77 VNFCHLVRNSTPTSQLSVVHC---SAGVGRTGTYIACDLLLQCL 117 (205)
Q Consensus 77 ~~~i~~v~~~~~~~~pivVHC---~~G~gRsG~f~ai~~~~~~l 117 (205)
-+.+...+.....-..|+||- .+|+|+..+.+|.+.++++-
T Consensus 231 e~al~~~ntaaariarvvvhpdyr~dglg~~sv~~a~ewI~eRr 274 (593)
T COG2401 231 EEALRECNTAAARIARVVVHPDYRADGLGQLSVIAALEWIIERR 274 (593)
T ss_pred HHHHHHhhhhhhheeEEEeccccccCccchhHHHHHHHHHHHhh
Confidence 333444443322456899997 58999999999999997764
No 94
>PRK10310 PTS system galactitol-specific transporter subunit IIB; Provisional
Probab=28.70 E-value=59 Score=22.59 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=12.7
Q ss_pred cEEEEcCCCCchhhHHHH
Q psy12349 92 LSVVHCSAGVGRTGTYIA 109 (205)
Q Consensus 92 pivVHC~~G~gRsG~f~a 109 (205)
.|++-|..|+| |+++++
T Consensus 4 kILvvCgsG~~-TS~m~~ 20 (94)
T PRK10310 4 KIIVACGGAVA-TSTMAA 20 (94)
T ss_pred eEEEECCCchh-HHHHHH
Confidence 58999999998 444433
No 95
>COG0314 MoaE Molybdopterin converting factor, large subunit [Coenzyme metabolism]
Probab=27.66 E-value=2.3e+02 Score=21.73 Aligned_cols=65 Identities=14% Similarity=0.242 Sum_probs=47.6
Q ss_pred EEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC--------------CCCcEEEEcCCCCchhhHHHHHHHHHHHHh
Q psy12349 53 VLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP--------------TSQLSVVHCSAGVGRTGTYIACDLLLQCLQ 118 (205)
Q Consensus 53 ~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~--------------~~~pivVHC~~G~gRsG~f~ai~~~~~~l~ 118 (205)
-+.|..+.|...|.. ....+.++...++.... .+..+++--..|..|.-+|-|+..+++.++
T Consensus 44 G~~v~~L~yEaY~~m----a~k~l~~I~~e~~~k~~~~~v~i~HriG~l~~Ge~~v~v~v~s~HR~~Af~a~~~~id~lK 119 (149)
T COG0314 44 GRRVEALEYEAYPEM----AEKELEEIAAEAKEKWGLLRVAIIHRIGELKIGEAIVLVGVASAHRKEAFEACEYIIDRLK 119 (149)
T ss_pred CceeeeEEEecCHHH----HHHHHHHHHHHHHHhCCceeEEEEEeeccccCCCcEEEEEEecccHHHHHHHHHHHHHHHH
Confidence 456778888665532 36677888888877653 445566656778899999999999999987
Q ss_pred cCC
Q psy12349 119 HNR 121 (205)
Q Consensus 119 ~~~ 121 (205)
..-
T Consensus 120 ~~a 122 (149)
T COG0314 120 HRA 122 (149)
T ss_pred hhC
Confidence 653
No 96
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=27.06 E-value=1.2e+02 Score=25.91 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=19.4
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIACDLL 113 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai~~~ 113 (205)
..++||+.|..|+.-|-++.|+..+
T Consensus 233 ~~~~vI~yCgsG~~As~~~~al~~l 257 (285)
T COG2897 233 PDKEVIVYCGSGVRASVTWLALAEL 257 (285)
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHh
Confidence 6889999999998877666665544
No 97
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=27.03 E-value=67 Score=22.54 Aligned_cols=18 Identities=22% Similarity=0.350 Sum_probs=12.6
Q ss_pred CCCcEEEEcCCCCchhhH
Q psy12349 89 TSQLSVVHCSAGVGRTGT 106 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~ 106 (205)
...+||++|..+..|+..
T Consensus 61 ~~~~iv~yC~~~~~r~~~ 78 (113)
T cd01531 61 KKDTVVFHCALSQVRGPS 78 (113)
T ss_pred CCCeEEEEeecCCcchHH
Confidence 457999999855455544
No 98
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=27.00 E-value=1.5e+02 Score=23.91 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHH
Q psy12349 74 DVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACD 111 (205)
Q Consensus 74 ~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~ 111 (205)
+.+.+.++.+.. ..+.|+|- |+||||.++-..
T Consensus 26 ~~~~~a~~~i~~---~~gkv~V~---G~GkSG~Igkk~ 57 (202)
T COG0794 26 EDFVRAVELILE---CKGKVFVT---GVGKSGLIGKKF 57 (202)
T ss_pred HHHHHHHHHHHh---cCCcEEEE---cCChhHHHHHHH
Confidence 345555555555 46889986 999999875543
No 99
>PRK01415 hypothetical protein; Validated
Probab=25.80 E-value=1.9e+02 Score=24.10 Aligned_cols=18 Identities=17% Similarity=0.279 Sum_probs=13.3
Q ss_pred CCCcEEEEcCCCCchhhHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f 107 (205)
.+.||+++|..| .||...
T Consensus 170 k~k~Iv~yCtgG-iRs~kA 187 (247)
T PRK01415 170 KGKKIAMVCTGG-IRCEKS 187 (247)
T ss_pred CCCeEEEECCCC-hHHHHH
Confidence 578999999777 555543
No 100
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=25.80 E-value=64 Score=28.21 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=16.7
Q ss_pred CCCcEEEEcCCCCchhhHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIA 109 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~a 109 (205)
.+.+|+|+|..|..||+.++.
T Consensus 87 ~~~~ivvyC~rgG~RS~~aa~ 107 (345)
T PRK11784 87 ANPRGLLYCWRGGLRSGSVQQ 107 (345)
T ss_pred CCCeEEEEECCCChHHHHHHH
Confidence 468999999877788887653
No 101
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=25.51 E-value=1.4e+02 Score=26.85 Aligned_cols=45 Identities=16% Similarity=0.234 Sum_probs=30.4
Q ss_pred CCCCCCChHHHHHHHHHHHhhCCCCCcEEEEcC--CCCchhhHHHHHHHH
Q psy12349 66 DFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCS--AGVGRTGTYIACDLL 113 (205)
Q Consensus 66 d~~~P~~~~~~~~~i~~v~~~~~~~~pivVHC~--~G~gRsG~f~ai~~~ 113 (205)
+.++..-+..++.-++.+-. ..+-++|..- .|+||||.|.|.+..
T Consensus 196 EgGV~~~~~~fl~~lr~lCd---~~g~LLI~DEVQtG~GRTGk~fA~e~~ 242 (404)
T COG4992 196 EGGVIPAPPEFLKALRELCD---EHGALLILDEVQTGLGRTGKLFAYEHY 242 (404)
T ss_pred CCCCCCCCHHHHHHHHHHHH---HhCeEEEEeccccCCCccchHHHHHHh
Confidence 45554445666655555544 3577777764 799999999887654
No 102
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=25.35 E-value=1.1e+02 Score=21.17 Aligned_cols=13 Identities=23% Similarity=0.306 Sum_probs=11.0
Q ss_pred CCCcEEEEcCCCC
Q psy12349 89 TSQLSVVHCSAGV 101 (205)
Q Consensus 89 ~~~pivVHC~~G~ 101 (205)
...+++|+|..|.
T Consensus 57 ~~~~ivv~c~~g~ 69 (108)
T PRK00162 57 FDTPVMVMCYHGN 69 (108)
T ss_pred CCCCEEEEeCCCC
Confidence 4689999999875
No 103
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=24.98 E-value=90 Score=26.75 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=10.7
Q ss_pred CCCcEEEEcCCCC
Q psy12349 89 TSQLSVVHCSAGV 101 (205)
Q Consensus 89 ~~~pivVHC~~G~ 101 (205)
.+.+||++|..|.
T Consensus 268 ~~~~iv~yC~sG~ 280 (320)
T PLN02723 268 LDSPIVASCGTGV 280 (320)
T ss_pred CCCCEEEECCcHH
Confidence 5789999998764
No 104
>PF11416 Sed5p: Integral membrane protein Sed5p; InterPro: IPR021538 Sed5p interacts with Sly1p , a positive regulator of intracellular membrane fusion, allowing SM proteins to stay associated with the assembling fusion machinery. This allows for participation in late fusion steps []. ; PDB: 1MQS_B.
Probab=23.75 E-value=13 Score=20.33 Aligned_cols=9 Identities=56% Similarity=0.874 Sum_probs=6.0
Q ss_pred CCCcccccc
Q psy12349 183 FQNRTAEFN 191 (205)
Q Consensus 183 ~~~r~~~~~ 191 (205)
.++||.||+
T Consensus 4 IqdRT~EFq 12 (29)
T PF11416_consen 4 IQDRTIEFQ 12 (29)
T ss_dssp HHB-HHHHH
T ss_pred hhHhhHHHH
Confidence 368999985
No 105
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=23.66 E-value=4.4e+02 Score=22.04 Aligned_cols=62 Identities=11% Similarity=0.071 Sum_probs=38.2
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCC--CCchhhHHHHHHHHHHHHh--------------cCCcccHHHHHHHHHh
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSA--GVGRTGTYIACDLLLQCLQ--------------HNRKLNIFRTVLDLRE 134 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~--G~gRsG~f~ai~~~~~~l~--------------~~~~v~v~~~v~~lR~ 134 (205)
.|..+.+++..++... +.-|+-+||.+ |.+-+-+++|+......+. ..+.....+++..++.
T Consensus 176 ~P~~v~~lv~~l~~~~-~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraGN~~~E~lv~~L~~ 253 (274)
T cd07938 176 TPAQVRRLLEAVLERF-PDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEG 253 (274)
T ss_pred CHHHHHHHHHHHHHHC-CCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccCCcCHHHHHHHHHh
Confidence 4556666666665543 34789999975 6666666777666554443 2345666777766654
No 106
>PRK10318 hypothetical protein; Provisional
Probab=23.55 E-value=1.1e+02 Score=22.62 Aligned_cols=34 Identities=18% Similarity=0.280 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHhhCC-CCCcEEEEcCCCCc-hhhH
Q psy12349 73 PDVLVNFCHLVRNSTP-TSQLSVVHCSAGVG-RTGT 106 (205)
Q Consensus 73 ~~~~~~~i~~v~~~~~-~~~pivVHC~~G~g-RsG~ 106 (205)
.....+||+.+..... .+.|-.|+|.+|-- .|+.
T Consensus 70 i~taE~FI~~~ASkSs~SGkpY~V~c~~~~~~~S~~ 105 (121)
T PRK10318 70 IDTAEQFIDKVASSSSISGKPYIVKCPGKSDENAQP 105 (121)
T ss_pred cccHHHHHHHHhhhcccCCCCeEEEcCCCCcccHHH
Confidence 4456677777776555 78999999999965 4444
No 107
>PRK07952 DNA replication protein DnaC; Validated
Probab=23.43 E-value=3.6e+02 Score=22.25 Aligned_cols=43 Identities=9% Similarity=0.098 Sum_probs=30.1
Q ss_pred CcEEEEcCCCCchhhHHHHHHHHHHHHhcCC---cccHHHHHHHHHhh
Q psy12349 91 QLSVVHCSAGVGRTGTYIACDLLLQCLQHNR---KLNIFRTVLDLREQ 135 (205)
Q Consensus 91 ~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~---~v~v~~~v~~lR~~ 135 (205)
.+++++...|+|.|-+.+|+...+. .... .+++.+++..++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~--~~g~~v~~it~~~l~~~l~~~ 145 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELL--LRGKSVLIITVADIMSAMKDT 145 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH--hcCCeEEEEEHHHHHHHHHHH
Confidence 5899999999999988877655432 2222 34677777777653
No 108
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=23.35 E-value=1.3e+02 Score=24.23 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=27.2
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCC--CCchhhHHHHHHHHHHH
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSA--GVGRTGTYIACDLLLQC 116 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~--G~gRsG~f~ai~~~~~~ 116 (205)
.|..+.+++..+++.. +..|+-+||.+ |.+-+-+++|+......
T Consensus 164 ~P~~v~~lv~~~~~~~-~~~~l~~H~Hnd~Gla~An~laA~~aGa~~ 209 (237)
T PF00682_consen 164 TPEDVAELVRALREAL-PDIPLGFHAHNDLGLAVANALAALEAGADR 209 (237)
T ss_dssp -HHHHHHHHHHHHHHS-TTSEEEEEEBBTTS-HHHHHHHHHHTT-SE
T ss_pred CHHHHHHHHHHHHHhc-cCCeEEEEecCCccchhHHHHHHHHcCCCE
Confidence 4666777777777765 34788888865 66656666666554443
No 109
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=23.13 E-value=4e+02 Score=22.13 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=36.7
Q ss_pred ChHHHHHHHHHHHhhCCCCCcEEEEcCC--CCchhhHHHHHHHHHHHHh--------cCCcccHHHHHHHHHhh
Q psy12349 72 GPDVLVNFCHLVRNSTPTSQLSVVHCSA--GVGRTGTYIACDLLLQCLQ--------HNRKLNIFRTVLDLREQ 135 (205)
Q Consensus 72 ~~~~~~~~i~~v~~~~~~~~pivVHC~~--G~gRsG~f~ai~~~~~~l~--------~~~~v~v~~~v~~lR~~ 135 (205)
.|..+.+++..++....+.-|+-+||.+ |++=+-+++|+......+. ..+.....+++..++..
T Consensus 165 ~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~~aGN~~~E~~v~~l~~~ 238 (266)
T cd07944 165 YPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGRGAGNLPTELLLDYLNNK 238 (266)
T ss_pred CHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCCCcCcHHHHHHHHHHHHh
Confidence 4666777777776654223789999976 4444444555544332222 11245667777777655
No 110
>PRK10812 putative DNAse; Provisional
Probab=22.90 E-value=70 Score=26.70 Aligned_cols=26 Identities=12% Similarity=0.211 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhCCCCCcEEEEcCCCCc
Q psy12349 74 DVLVNFCHLVRNSTPTSQLSVVHCSAGVG 102 (205)
Q Consensus 74 ~~~~~~i~~v~~~~~~~~pivVHC~~G~g 102 (205)
..|...++.... .+.||++||.++..
T Consensus 111 ~vf~~ql~lA~e---~~~Pv~iH~r~a~~ 136 (265)
T PRK10812 111 ESFRHHIQIGRE---LNKPVIVHTRDARA 136 (265)
T ss_pred HHHHHHHHHHHH---hCCCeEEEeeCchH
Confidence 444444555444 57999999987543
No 111
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=21.65 E-value=98 Score=23.47 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=23.0
Q ss_pred CCcEEEEcCCCCchhhHHHHHHHHHH
Q psy12349 90 SQLSVVHCSAGVGRTGTYIACDLLLQ 115 (205)
Q Consensus 90 ~~pivVHC~~G~gRsG~f~ai~~~~~ 115 (205)
++..+|....|.|.|.++-|+.+++.
T Consensus 19 ~g~~vi~G~Ng~GKStil~ai~~~L~ 44 (202)
T PF13476_consen 19 PGLNVIYGPNGSGKSTILEAIRYALG 44 (202)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 57889999999999999999988864
No 112
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=21.51 E-value=3.1e+02 Score=23.05 Aligned_cols=65 Identities=6% Similarity=0.008 Sum_probs=48.3
Q ss_pred EEEEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC--------------CCCcEEEEcCCCCchhhHHHHHHHHHHHHh
Q psy12349 53 VLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP--------------TSQLSVVHCSAGVGRTGTYIACDLLLQCLQ 118 (205)
Q Consensus 53 ~~~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~--------------~~~pivVHC~~G~gRsG~f~ai~~~~~~l~ 118 (205)
...+..+.|...+ |.....+..+...+.+... .+.++++-...+..|.-+|-|+..+++.++
T Consensus 177 g~~v~~L~ye~y~----~~A~~~l~~I~~e~~~~~~~~~v~v~Hr~G~l~vge~~v~v~v~a~hR~~af~a~~~~id~lK 252 (274)
T PRK14493 177 DEPTEYLEFEKYD----GVADERMAAIREELKQRDGVFEVLLHHRTGVIEAGEDIVFVVVLAGHRQEAFRAVSDGIDRLK 252 (274)
T ss_pred CCcEEEEEEEeCC----HHHHHHHHHHHHHHHHhCCCceEEEEEeeccccCCCeEEEEEEecCCHHHHHHHHHHHHHHHh
Confidence 4557788885543 2346778888888877543 456777777788899999999999999997
Q ss_pred cCC
Q psy12349 119 HNR 121 (205)
Q Consensus 119 ~~~ 121 (205)
.+-
T Consensus 253 ~~~ 255 (274)
T PRK14493 253 DEV 255 (274)
T ss_pred hcC
Confidence 654
No 113
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=21.32 E-value=2.7e+02 Score=18.70 Aligned_cols=37 Identities=27% Similarity=0.338 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHH
Q psy12349 73 PDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIAC 110 (205)
Q Consensus 73 ~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai 110 (205)
...+...............+||++|..| .|++..+++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~iv~yc~~~-~~~~~~~~~ 86 (113)
T PF00581_consen 50 EDKLDEFLKELGKKIDKDKDIVFYCSSG-WRSGSAAAA 86 (113)
T ss_dssp HHHHHHHHHHHTHGSTTTSEEEEEESSS-CHHHHHHHH
T ss_pred ccccccccccccccccccccceeeeecc-cccchhHHH
Confidence 4444444444444333567899999444 445544444
No 114
>PF02391 MoaE: MoaE protein; InterPro: IPR003448 This family contains the MoaE protein that is involved in biosynthesis of molybdopterin []. Molybdopterin, the universal component of the pterin molybdenum cofactors, contains a dithiolene group serving to bind Mo. Addition of the dithiolene sulphurs to a molybdopterin precursor requires the activity of the converting factor. Converting factor contains the MoaE and MoaD proteins.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2WP4_B 2OMD_B 1NVJ_E 1FM0_E 3BII_E 1NVI_E 1FMA_E 2QIE_K 2Q5W_E 3RPF_A ....
Probab=21.31 E-value=2.3e+02 Score=20.46 Aligned_cols=61 Identities=11% Similarity=0.257 Sum_probs=46.2
Q ss_pred EEEEEEeCCCCCCCCCCChHHHHHHHHHHHhhCC--------------CCCcEEEEcCCCCchhhHHHHHHHHHHHHhc
Q psy12349 55 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTP--------------TSQLSVVHCSAGVGRTGTYIACDLLLQCLQH 119 (205)
Q Consensus 55 ~v~h~~y~~Wpd~~~P~~~~~~~~~i~~v~~~~~--------------~~~pivVHC~~G~gRsG~f~ai~~~~~~l~~ 119 (205)
.|..+.|...+. .....+.++...+..... .+.++++-.-+|..|.-+|-|+..+++.++.
T Consensus 41 ~v~~L~ye~y~~----ma~~~l~~I~~e~~~~~~~~~v~i~HR~G~l~vGe~~v~V~vsa~hR~eaf~A~~~~id~iK~ 115 (117)
T PF02391_consen 41 KVEALEYEAYEE----MAEKELEEIAEEARERFGIVDVAIVHRVGRLKVGEPIVLVAVSAPHRKEAFEACEYIIDRIKK 115 (117)
T ss_dssp CEEEEEEEE-HH----HHHHHHHHHHHHHHHHSTTCEEEEEEEEEEEETTSEEEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEEEccH----HHHHHHHHHHHHHHHhCCCeEEEEEEeeCCCCCCCeEEEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 677777765542 236778888888887654 5677777778889999999999999998864
No 115
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=21.29 E-value=2.9e+02 Score=19.10 Aligned_cols=65 Identities=14% Similarity=0.186 Sum_probs=38.2
Q ss_pred CcEEEEcCCCCchhhHHHHHHHHHHHHhcCC------cccHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHcC
Q psy12349 91 QLSVVHCSAGVGRTGTYIACDLLLQCLQHNR------KLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASALESS 160 (205)
Q Consensus 91 ~pivVHC~~G~gRsG~f~ai~~~~~~l~~~~------~v~v~~~v~~lR~~R~~~v~t~~Qy~fi~~~vl~~i~~~ 160 (205)
..|++-|.+|.+ |+.++ .-+-+.++..+ ..++.++-..+ ...-.|-...|..|.+.-+-+.+...
T Consensus 4 ~~ILl~C~~G~s-SS~l~--~k~~~~~~~~gi~~~v~a~~~~~~~~~~--~~~Dvill~pqi~~~~~~i~~~~~~~ 74 (95)
T TIGR00853 4 TNILLLCAAGMS-TSLLV--NKMNKAAEEYGVPVKIAAGSYGAAGEKL--DDADVVLLAPQVAYMLPDLKKETDKK 74 (95)
T ss_pred cEEEEECCCchh-HHHHH--HHHHHHHHHCCCcEEEEEecHHHHHhhc--CCCCEEEECchHHHHHHHHHHHhhhc
Confidence 579999999999 66433 33334343333 12333332222 23456667789999888777776544
No 116
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=21.24 E-value=4.4e+02 Score=21.20 Aligned_cols=64 Identities=11% Similarity=0.110 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHHHhhCCCCCcEEEEcCC--CCchhhHHHHHHHHHHHHh--------cCCcccHHHHHHHHHhh
Q psy12349 71 GGPDVLVNFCHLVRNSTPTSQLSVVHCSA--GVGRTGTYIACDLLLQCLQ--------HNRKLNIFRTVLDLREQ 135 (205)
Q Consensus 71 ~~~~~~~~~i~~v~~~~~~~~pivVHC~~--G~gRsG~f~ai~~~~~~l~--------~~~~v~v~~~v~~lR~~ 135 (205)
.++..+.+++..+++.. +..|+-+||.+ |++=+-+++|+......+. ..+..+..+++..++..
T Consensus 172 ~~P~~v~~li~~l~~~~-~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~~ 245 (265)
T cd03174 172 ATPEEVAELVKALREAL-PDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEGL 245 (265)
T ss_pred cCHHHHHHHHHHHHHhC-CCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHhc
Confidence 35788888888888865 33789999865 6666666666665443332 22246667777766554
No 117
>KOG1529|consensus
Probab=21.17 E-value=89 Score=26.63 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=19.4
Q ss_pred CCCcEEEEcCCCCchhhHHHHHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIACDLL 113 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai~~~ 113 (205)
.+.|+++-|..|+.-+-.+.+++.+
T Consensus 235 ~~~p~~~sC~~Gisa~~i~~al~r~ 259 (286)
T KOG1529|consen 235 LSKPVIVSCGTGISASIIALALERS 259 (286)
T ss_pred cCCCEEEeeccchhHHHHHHHHHhc
Confidence 5799999999999877666665544
No 118
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=21.15 E-value=2.3e+02 Score=18.24 Aligned_cols=15 Identities=33% Similarity=0.645 Sum_probs=10.9
Q ss_pred CCCcEEEEcCCCCchh
Q psy12349 89 TSQLSVVHCSAGVGRT 104 (205)
Q Consensus 89 ~~~pivVHC~~G~gRs 104 (205)
...+|+|+|..| .|+
T Consensus 55 ~~~~iv~~c~~g-~~a 69 (100)
T smart00450 55 KDKPVVVYCRSG-NRS 69 (100)
T ss_pred CCCeEEEEeCCC-cHH
Confidence 678999999543 444
No 119
>PRK11449 putative deoxyribonuclease YjjV; Provisional
Probab=20.79 E-value=1.2e+02 Score=25.12 Aligned_cols=26 Identities=12% Similarity=0.038 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHHhhCCCCCcEEEEcCCCC
Q psy12349 73 PDVLVNFCHLVRNSTPTSQLSVVHCSAGV 101 (205)
Q Consensus 73 ~~~~~~~i~~v~~~~~~~~pivVHC~~G~ 101 (205)
...|..+++.+.. .+.||+|||.+..
T Consensus 113 ~~vf~~ql~lA~~---~~~Pv~iH~r~a~ 138 (258)
T PRK11449 113 QWLLDEQLKLAKR---YDLPVILHSRRTH 138 (258)
T ss_pred HHHHHHHHHHHHH---hCCCEEEEecCcc
Confidence 3445555555555 5799999998743
No 120
>KOG1530|consensus
Probab=20.71 E-value=99 Score=23.31 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCC-CCCcEEEEcCCCCchhh
Q psy12349 77 VNFCHLVRNSTP-TSQLSVVHCSAGVGRTG 105 (205)
Q Consensus 77 ~~~i~~v~~~~~-~~~pivVHC~~G~gRsG 105 (205)
.+|.+.+..... ....||++|..|. |+.
T Consensus 75 ~eF~kqvg~~kp~~d~eiIf~C~SG~-Rs~ 103 (136)
T KOG1530|consen 75 PEFLKQVGSSKPPHDKEIIFGCASGV-RSL 103 (136)
T ss_pred HHHHHHhcccCCCCCCcEEEEeccCc-chh
Confidence 345555555443 4559999999884 443
No 121
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=20.64 E-value=3.3e+02 Score=23.20 Aligned_cols=29 Identities=10% Similarity=0.085 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCCCCcEEEEcCCCCchhhHH
Q psy12349 77 VNFCHLVRNSTPTSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 77 ~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f 107 (205)
++.++.+++.. +-|+|+|+..|++..-.-
T Consensus 195 ~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~ 223 (288)
T TIGR00167 195 FERLEEIQKYV--NLPLVLHGGSGIPDEEIK 223 (288)
T ss_pred HHHHHHHHHHh--CCCEEEeCCCCCCHHHHH
Confidence 34555555543 689999999999976543
No 122
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=20.53 E-value=2.4e+02 Score=24.16 Aligned_cols=39 Identities=10% Similarity=0.139 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHhhCCCCCcEEEEcCCCCchhhHHHHHH
Q psy12349 73 PDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACD 111 (205)
Q Consensus 73 ~~~~~~~i~~v~~~~~~~~pivVHC~~G~gRsG~f~ai~ 111 (205)
...+..+++.+........||+|..-.|.|++-+--++.
T Consensus 12 S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH 50 (326)
T PRK11608 12 ANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLH 50 (326)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHH
Confidence 456777777777776678999999999999987655554
No 123
>PF01736 Polyoma_agno: Polyomavirus agnoprotein; InterPro: IPR002643 This family consists of the DNA-binding protein or agnoprotein from various polyomaviruses. This protein is highly basic and can bind single stranded and double stranded DNA []. Mutations in the agnoprotein produce smaller viral plaques, hence its function is not essential for growth in tissue culture cells but something has slowed in the normal replication cycle []. There is also evidence suggesting that the agnogene and agnoprotein act as regulators of structural protein synthesis [].; GO: 0003677 DNA binding
Probab=20.34 E-value=2.3e+02 Score=17.89 Aligned_cols=22 Identities=9% Similarity=0.306 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHcCCCcccC
Q psy12349 145 QYVYLYQSIASALESSDTLKLK 166 (205)
Q Consensus 145 Qy~fi~~~vl~~i~~~~~l~~~ 166 (205)
-+.|+.+.+++|...++.+..+
T Consensus 28 ifiFiLElLL~FC~GedsvdGK 49 (62)
T PF01736_consen 28 IFIFILELLLEFCRGEDSVDGK 49 (62)
T ss_pred HHHHHHHHHHHHhcCCcccccc
Confidence 4678888999999888776554
No 124
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=20.32 E-value=2.7e+02 Score=24.31 Aligned_cols=44 Identities=16% Similarity=0.127 Sum_probs=28.4
Q ss_pred CCCCCCCCCChHHHHHHHHHHHhhCC---CCCcEEEEcCCCCchhhHH
Q psy12349 63 DWQDFSIPGGPDVLVNFCHLVRNSTP---TSQLSVVHCSAGVGRTGTY 107 (205)
Q Consensus 63 ~Wpd~~~P~~~~~~~~~i~~v~~~~~---~~~pivVHC~~G~gRsG~f 107 (205)
-||... +.+...+..++....+..+ +...|+||+..|...+..-
T Consensus 140 lwp~g~-~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~ 186 (332)
T PF07745_consen 140 LWPDGK-PSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYR 186 (332)
T ss_dssp TBTTTC-TT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHH
T ss_pred cCcCCC-ccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHH
Confidence 388766 4467777777754444332 6788999999887765443
No 125
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=20.27 E-value=85 Score=25.81 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=17.3
Q ss_pred CCCcEEEEcCCCCchhhHHHHH
Q psy12349 89 TSQLSVVHCSAGVGRTGTYIAC 110 (205)
Q Consensus 89 ~~~pivVHC~~G~gRsG~f~ai 110 (205)
..+|++|...+|.|.|-+++.-
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~r 33 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLER 33 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHH
Confidence 4799999999999999877553
Done!