RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12349
(205 letters)
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized
as either transmembrane, receptor-like or
non-transmembrane (soluble) PTPs. Receptor-like PTP
domains tend to occur in two copies in the cytoplasmic
region of the transmembrane proteins, only one copy may
be active.
Length = 231
Score = 141 bits (359), Expect = 2e-42
Identities = 51/111 (45%), Positives = 66/111 (59%), Gaps = 2/111 (1%)
Query: 46 SFIKDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLS--VVHCSAGVGR 103
S E V HF W D +P PD L++ VR S VVHCSAGVGR
Sbjct: 120 SNTGTGETRTVTHFQYTGWPDHGVPESPDSLLDLLRKVRKSQQQPGSGPIVVHCSAGVGR 179
Query: 104 TGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIA 154
TGT+IA D+LLQ L+ ++IF+TV +LR QR MVQ+E QY++LY++I
Sbjct: 180 TGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAIL 230
Score = 39.9 bits (94), Expect = 4e-04
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 26 DTTRVPLLRDNSSDSDYINASFIK 49
D TRV L D+ SDYINAS+I
Sbjct: 12 DHTRVKLKPDDDEGSDYINASYID 35
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 136 bits (344), Expect = 4e-40
Identities = 47/112 (41%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 46 SFIKDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLS--VVHCSAGVGR 103
E V HFH W D +P P L++ VR S + VVHCSAGVGR
Sbjct: 122 KNGGSEETRTVTHFHYTGWPDHGVPESPKSLLDLIRKVRKSQADPRSGPIVVHCSAGVGR 181
Query: 104 TGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIAS 155
TGT+IA D+LLQ L+ ++++F+ V +LR QR MVQ+E QY++LY ++
Sbjct: 182 TGTFIAIDILLQQLEAEGEVDVFQIVKELRSQRPGMVQTEEQYIFLYDAVLE 233
Score = 34.6 bits (80), Expect = 0.023
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 18 NNNKN-STD----DTTRVPLLRDNSSDSDYINASFIK 49
N KN D D TRV L SDYINAS+I
Sbjct: 1 NLEKNRYKDILPYDHTRVKL--TPGGPSDYINASYID 35
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 133 bits (338), Expect = 7e-39
Identities = 50/110 (45%), Positives = 71/110 (64%), Gaps = 1/110 (0%)
Query: 46 SFIKDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLS-VVHCSAGVGRT 104
+ SE V H+H +W D +P P+ +++ VR S TS VVHCSAGVGRT
Sbjct: 149 TNTGCSETRTVTHYHYTNWPDHGVPESPESILDLIRAVRKSQSTSTGPIVVHCSAGVGRT 208
Query: 105 GTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIA 154
GT+IA D+LLQ L+ ++++IF V +LR QR MVQ+E QY++LY++I
Sbjct: 209 GTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLYRAIL 258
Score = 41.9 bits (99), Expect = 7e-05
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 8/56 (14%)
Query: 2 ELMNNNNNSNNTTN---NNNNNKN-STD----DTTRVPLLRDNSSDSDYINASFIK 49
+L + + T N +KN D D TRV L SDYINAS+I
Sbjct: 8 KLDRLKPDDESCTVAAFPENRDKNRYKDVLPYDHTRVKLKPPPGEGSDYINASYID 63
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 117 bits (294), Expect = 3e-34
Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 4/105 (3%)
Query: 55 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLS---VVHCSAGVGRTGTYIACD 111
VKH+H W D +P PD ++ V+ + S+ S VVHCSAGVGRTGT++A D
Sbjct: 1 TVKHYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAID 60
Query: 112 LLLQCLQH-NRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIAS 155
+LLQ L+ +++IF TV +LR QR MVQ+E QY++LY+++
Sbjct: 61 ILLQQLEAEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALLE 105
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and
not by those of "PTPc" or "DSPc" are predicted to be
protein phosphatases with a similar fold to DSPs and
PTPs, yet with unpredicted specificities.
Length = 105
Score = 117 bits (294), Expect = 3e-34
Identities = 47/105 (44%), Positives = 68/105 (64%), Gaps = 4/105 (3%)
Query: 55 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLS---VVHCSAGVGRTGTYIACD 111
VKH+H W D +P PD ++ V+ + S+ S VVHCSAGVGRTGT++A D
Sbjct: 1 TVKHYHYTGWPDHGVPESPDSILELLRAVKKNLNQSESSGPVVVHCSAGVGRTGTFVAID 60
Query: 112 LLLQCLQH-NRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIAS 155
+LLQ L+ +++IF TV +LR QR MVQ+E QY++LY+++
Sbjct: 61 ILLQQLEAEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALLE 105
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 83.0 bits (205), Expect = 3e-19
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 27/161 (16%)
Query: 21 KNSTDDTTR------VPLLRDNSSDSDYINASF---IKDSEVLEVKHFHLHDWQDFSIPG 71
DDT + +D+ +F + ++ HF +W DF+
Sbjct: 141 PLGYDDTLIIGLRVIKQKKYELFNDNIVNVHNFELTSINGPPKKIHHFQYINWVDFN--- 197
Query: 72 GPDV--LVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLN----- 124
PD+ L H + +S + +VHCSAGVGRTGT+IA D+LL+ N LN
Sbjct: 198 VPDIRSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLR--MPNDTLNHTDTW 255
Query: 125 ------IFRTVLDLREQRAHMVQSEAQYVYLYQSIASALES 159
IF+ VL LR QR MVQ++ Q+ +LY + +S
Sbjct: 256 EDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYDAFLELNKS 296
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 65.8 bits (160), Expect = 5e-13
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 11/114 (9%)
Query: 55 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVR-----------NSTPTSQLSVVHCSAGVGR 103
E+ HF DW D IP G + + V N T VVHCSAG+GR
Sbjct: 201 EIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDPQTLGPIVVHCSAGIGR 260
Query: 104 TGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASAL 157
GT+ A D L+ L+ +++ + VL +R+QR V QY + Y+++ A+
Sbjct: 261 AGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYAI 314
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 63.0 bits (153), Expect = 5e-12
Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 14/122 (11%)
Query: 55 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVR------------NSTPTSQLS--VVHCSAG 100
V HF+ W D +P +NF VR Q VVHC+AG
Sbjct: 178 TVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAG 237
Query: 101 VGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLYQSIASALESS 160
+GRT Y D+ + ++I V +R QR + + QY + Y+++ + +
Sbjct: 238 LGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVNLT 297
Query: 161 DT 162
Sbjct: 298 VN 299
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 61.2 bits (148), Expect = 3e-11
Identities = 30/110 (27%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 53 VLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLS------------VVHCSAG 100
L++KHF DW +P P+ ++F VR + + + +VHCSAG
Sbjct: 180 SLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAG 239
Query: 101 VGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYLY 150
+ R G + A D+ + + + V DLR+QR + + QY++ Y
Sbjct: 240 LDRAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFCY 289
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 52.7 bits (126), Expect = 2e-08
Identities = 31/118 (26%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 43 INASFIKDSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLV--------RNSTPTSQL-- 92
I +KDS ++ HF +W + P + F ++ + P L
Sbjct: 173 ITDKILKDSR--KISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLC 230
Query: 93 -SVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRTVLDLREQRAHMVQSEAQYVYL 149
VVHCS GVG+TG + A D+ L L + + + +T +REQR + + Y+++
Sbjct: 231 PIVVHCSDGVGKTGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFI 288
>gnl|CDD|225297 COG2453, CDC14, Predicted protein-tyrosine phosphatase [Signal
transduction mechanisms].
Length = 180
Score = 43.2 bits (102), Expect = 2e-05
Identities = 31/123 (25%), Positives = 50/123 (40%), Gaps = 22/123 (17%)
Query: 43 INASFIKDSEVLE----VKHF------HLH-DWQDFSIPGGPDVLVNFCHLVRNSTPTSQ 91
INA I++ E+L V LH D ++P D L + + +
Sbjct: 48 INALVIEELELLGALYNVAIEENDGIQVLHLPILDGTVPDLED-LDKIVDFIEEALSKGK 106
Query: 92 LSVVHCSAGVGRTGTYIACDLLLQCLQHNRKLNIFRT---VLDLREQRAHMVQSEAQYVY 148
VVHC G+GR+GT IA L+L + + R +R V +E Q+++
Sbjct: 107 KVVVHCQGGIGRSGTVIAAYLML-------YGGLSLADEAIAVKRRRRPGAVVTEIQHLF 159
Query: 149 LYQ 151
+
Sbjct: 160 ELE 162
>gnl|CDD|185273 PRK15375, PRK15375, pathogenicity island 1 effector protein StpP;
Provisional.
Length = 535
Score = 34.4 bits (78), Expect = 0.035
Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 59 FHLHDWQDFSIPGGPDVLVNFCHLVRNS---------TPTSQLSVVHCSAGVGRTGTYIA 109
H+ +W D D L V+NS + L ++HC GVGRTGT A
Sbjct: 426 LHVKNWPDHQPLPSTDQLEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAA 485
Query: 110 CDLLLQCLQHNRKLNIFRTVLDLREQRAH-MVQSEAQYVYLYQSIASALESS 160
+ L+ N N+ + D R R + M++ +Q+V L A L ++
Sbjct: 486 ALV----LKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLLMTT 533
>gnl|CDD|111998 pfam03162, Y_phosphatase2, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 150
Score = 32.3 bits (74), Expect = 0.083
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 50 DSEVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIA 109
+SE +++ H H+ +D + +L L+ N + ++HC+ G RTG I
Sbjct: 53 ESEHIKLYHIHMEGNKDPFVNIPSHLLRRALKLLLN--KDNYPVLIHCNRGKHRTGLVIG 110
Query: 110 CDLLLQ 115
C LQ
Sbjct: 111 CLRKLQ 116
>gnl|CDD|222063 pfam13350, Y_phosphatase3, Tyrosine phosphatase family. This
family is closely related to the pfam00102 and pfam00782
families.
Length = 163
Score = 32.1 bits (74), Expect = 0.11
Identities = 11/21 (52%), Positives = 14/21 (66%), Gaps = 2/21 (9%)
Query: 94 VVHCSAGVGRTGTYIACDLLL 114
+ HC+AG RTG +A LLL
Sbjct: 127 LFHCTAGKDRTG--VAAALLL 145
>gnl|CDD|185524 PTZ00242, PTZ00242, protein tyrosine phosphatase; Provisional.
Length = 166
Score = 31.5 bits (72), Expect = 0.17
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 15/70 (21%)
Query: 50 DSEVLEVKHFHLHDW--QDFSIPGGP---DVLVNFCHLV-----RNSTPTSQLSVVHCSA 99
D+E+LE +HDW D G P V+ N+ L+ + STP ++V HC A
Sbjct: 53 DAELLEKNGIEVHDWPFDD----GAPPPKAVIDNWLRLLDQEFAKQSTPPETIAV-HCVA 107
Query: 100 GVGRTGTYIA 109
G+GR +A
Sbjct: 108 GLGRAPILVA 117
>gnl|CDD|227653 COG5350, COG5350, Predicted protein tyrosine phosphatase [General
function prediction only].
Length = 172
Score = 30.6 bits (69), Expect = 0.37
Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 8/69 (11%)
Query: 52 EVLEVKHFHLHDWQDFSIPGGPDVLVNFCHLVR-----NSTPTSQLSVVHCSAGVGRT-- 104
+ +H LH + D + P + H+ + P ++HC AG+ R+
Sbjct: 51 VIAAERHLTLH-FNDIAEPDDGWIAPGEAHVRAIIDFADEWPRFAPLLIHCYAGISRSTA 109
Query: 105 GTYIACDLL 113
IA L
Sbjct: 110 AALIAALAL 118
>gnl|CDD|214551 smart00195, DSPc, Dual specificity phosphatase, catalytic domain.
Length = 138
Score = 29.9 bits (68), Expect = 0.48
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 3/59 (5%)
Query: 55 EVKHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLL 113
+ D + I V F + ++ +VHC AGV R+ T I L+
Sbjct: 46 TYLGVPIDDNTETKISPYFPEAVEF---IEDAESKGGKVLVHCQAGVSRSATLIIAYLM 101
>gnl|CDD|237555 PRK13914, PRK13914, invasion associated secreted endopeptidase;
Provisional.
Length = 481
Score = 30.5 bits (68), Expect = 0.67
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 5 NNNNNSNNTTNNNNNNKNSTDDTTRVPLLRDNSSDSDYINAS 46
N NN+N +T + N N N+ +T N S+ + S
Sbjct: 323 TNTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNS 364
Score = 27.5 bits (60), Expect = 6.6
Identities = 10/42 (23%), Positives = 20/42 (47%)
Query: 5 NNNNNSNNTTNNNNNNKNSTDDTTRVPLLRDNSSDSDYINAS 46
N NN + +T + N N +++ T + S ++ N+S
Sbjct: 324 NTNNTNTSTPSKNTNTNTNSNTNTNSNTNANQGSSNNNSNSS 365
>gnl|CDD|218869 pfam06043, Reo_P9, Reovirus P9-like family.
Length = 333
Score = 29.8 bits (67), Expect = 0.83
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 6 NNNNSNNTTNNNNNNKNSTDDTTRVPLLRD 35
NN N+ NT NN+N + + T R P+L D
Sbjct: 21 NNQNNFNTNTQNNSNTENRNSTKRKPILDD 50
>gnl|CDD|216117 pfam00782, DSPc, Dual specificity phosphatase, catalytic domain.
Ser/Thr and Tyr protein phosphatases. The enzyme's
tertiary fold is highly similar to that of
tyrosine-specific phosphatases, except for a
"recognition" region.
Length = 131
Score = 29.2 bits (66), Expect = 0.88
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 95 VHCSAGVGRTGTYIACDLL 113
VHC AG+ R+ T I L+
Sbjct: 76 VHCQAGISRSATLIIAYLM 94
>gnl|CDD|177060 CHL00138, rps5, ribosomal protein S5; Validated.
Length = 143
Score = 28.8 bits (65), Expect = 1.1
Identities = 5/23 (21%), Positives = 7/23 (30%)
Query: 2 ELMNNNNNSNNTTNNNNNNKNST 24
L N N +N K +
Sbjct: 1 MLFLLKKMYNKKKNRKSNIKENK 23
>gnl|CDD|176790 cd08812, CARD_RIG-I_like, Caspase activation and recruitment
domains found in RIG-I-like DEAD box helicases. Caspase
activation and recruitment domains (CARDs) found in
Retinoic acid Inducible Gene I (RIG-I)-like DEAD box
helicases. These helicases, including MDA5 and RIG-I,
contain two N-terminal CARD domains and a C-terminal
DEAD box RNA helicase domain. They are cytoplasmic RNA
helicases that play an important role in host antiviral
response by sensing incoming viral RNA. Upon activation,
the signal is transferred to downstream pathways via the
adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to
the induction of type I interferons. Although very
similar in sequence, RIG-I and MDA5 have been shown to
recognize different sets of viruses. MDA5 and RIG-I
associate with IPS-1 through a CARD-CARD interaction. In
general, CARDs are death domains (DDs) found associated
with caspases. They are known to be important in the
signaling pathways for apoptosis, inflammation, and
host-defense mechanisms. DDs are protein-protein
interaction domains found in a variety of domain
architectures. Their common feature is that they form
homodimers by self-association or heterodimers by
associating with other members of the DD superfamily
including PYRIN and DED (Death Effector Domain). They
serve as adaptors in signaling pathways and can recruit
other proteins into signaling complexes.
Length = 88
Score = 27.3 bits (61), Expect = 2.0
Identities = 17/72 (23%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 64 WQDFSIPGGPDVLVNFCHLVRNSTPTSQLSVVHCSAGVGRTGTYIACDLLLQCLQHNRKL 123
+D IP D+L + + + Q+ + G A + LL L+ K
Sbjct: 15 LKDTIIPR--DILDHLPECLTDED-KEQILAEERNKGNIA-----AAEELLDRLERCDKP 66
Query: 124 NIFRTVLD-LRE 134
F+ LD LR
Sbjct: 67 GWFQAFLDALRR 78
>gnl|CDD|240427 PTZ00470, PTZ00470, glycoside hydrolase family 47 protein;
Provisional.
Length = 522
Score = 28.9 bits (65), Expect = 2.0
Identities = 12/50 (24%), Positives = 17/50 (34%)
Query: 5 NNNNNSNNTTNNNNNNKNSTDDTTRVPLLRDNSSDSDYINASFIKDSEVL 54
N ++N NN NNNN ++ + F K EV
Sbjct: 13 NADDNYNNNNNNNNQINSNNPNNNGNNQASKLPRGKKKQENPFNKIDEVY 62
Score = 27.4 bits (61), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 5 NNNNNSNNTTNNNNNNKNSTDD 26
NN +++ N NNNNN NS +
Sbjct: 12 NNADDNYNNNNNNNNQINSNNP 33
>gnl|CDD|238073 cd00127, DSPc, Dual specificity phosphatases (DSP); Ser/Thr and Tyr
protein phosphatases. Structurally similar to
tyrosine-specific phosphatases but with a shallower
active site cleft and a distinctive active site
signature motif, HCxxGxxR. Characterized as VHR- or
Cdc25-like.
Length = 139
Score = 27.6 bits (62), Expect = 2.5
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 57 KHFHLHDWQDFSIPGGPDVLVNFCHLVRNSTPTSQLSV-VHCSAGVGRTGTYIA 109
+ + D I D V+F R V VHC AGV R+ T +
Sbjct: 51 LYVPILDLPSQDISKYFDEAVDFIDDAR----EKGGKVLVHCLAGVSRSATLVI 100
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1);
Provisional.
Length = 1466
Score = 28.8 bits (64), Expect = 2.7
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 3 LMNNNNNSNNTTNNNNNNKNSTDDTTRVPLLRDNSSDSDYINASFIKDSE 52
M NN ++ ++NN+N +D + + D D +N + ++E
Sbjct: 723 TMINNQKVSSKKSSNNDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENE 772
>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional.
Length = 443
Score = 28.0 bits (63), Expect = 4.0
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 2/17 (11%)
Query: 95 VHCSAGVGRTGTYIACD 111
V C G+GRTGT AC+
Sbjct: 242 VMC--GMGRTGTLFACE 256
>gnl|CDD|214408 MTH00036, ATP8, ATP synthase F0 subunit 8; Validated.
Length = 54
Score = 25.0 bits (55), Expect = 7.5
Identities = 9/16 (56%), Positives = 15/16 (93%)
Query: 5 NNNNNSNNTTNNNNNN 20
N +N+S+NT+++NNNN
Sbjct: 36 NASNSSSNTSSSNNNN 51
>gnl|CDD|130372 TIGR01305, GMP_reduct_1, guanosine monophosphate reductase,
eukaryotic. A deep split separates two families of GMP
reductase. This family includes both eukaryotic and some
proteobacterial sequences, while the other family
contains other bacterial sequences [Purines,
pyrimidines, nucleosides, and nucleotides, Nucleotide
and nucleoside interconversions].
Length = 343
Score = 26.8 bits (59), Expect = 7.9
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 21 KNSTDDTTRVPLLRDN-SSDSDYINASFIKDSEVLEV--KHFHLHDWQDFSIPGGPDVLV 77
+NS + VP++ N + + A+ + + KH+ + +W+ F+ PD L
Sbjct: 37 RNSKQTYSGVPIIAANMDTVGTFEMAAALSQHSIFTAIHKHYSVDEWKAFATNSSPDCLQ 96
Query: 78 NFCHLVRNSTPTSQ 91
N V S+ +S
Sbjct: 97 N----VAVSSGSSD 106
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.127 0.366
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,666,625
Number of extensions: 841537
Number of successful extensions: 1142
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1045
Number of HSP's successfully gapped: 80
Length of query: 205
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 113
Effective length of database: 6,857,034
Effective search space: 774844842
Effective search space used: 774844842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (25.8 bits)