BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12350
(1129 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XVI|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing
Monooxygenase (Y207s)
pdb|2XVI|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin Containing
Monooxygenase (Y207s)
pdb|2XVI|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin Containing
Monooxygenase (Y207s)
pdb|2XVJ|A Chain A, Crystal Structure Of The Mutant Bacterial Flavin Containing
Monooxygenase In Complex With Indole
pdb|2XVJ|B Chain B, Crystal Structure Of The Mutant Bacterial Flavin Containing
Monooxygenase In Complex With Indole
pdb|2XVJ|C Chain C, Crystal Structure Of The Mutant Bacterial Flavin Containing
Monooxygenase In Complex With Indole
Length = 464
Score = 107 bits (266), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 30/282 (10%)
Query: 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+++ P PEF+G + ILH+ D+R F K ++VGS S DI G Q
Sbjct: 164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDI-------GSQC 216
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDG 955
G+ + +S + P N +P++ + F DG
Sbjct: 217 YKYGAKK----------------LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADG 260
Query: 956 SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP--LYKHTINIEHPTMFILGVPRHT 1013
S E+VD I+ CTGY +H+PFL++ + V N + P LYK + ++P F +G+
Sbjct: 261 SSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQW 319
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENF 1073
FN+FD Q + ++ G + LPSKEEM AD+ L + G ++
Sbjct: 320 YSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG----DY 375
Query: 1074 LNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQ 1115
+ ++I M S P K + + E+ + FR++ Y+
Sbjct: 376 IQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYR 417
Score = 82.8 bits (203), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 579 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
+++ P PEF+G + ILH+ D+R F K ++VGS S DI +
Sbjct: 164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDIGSQCYKYGAKK 223
Query: 639 FLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHE 698
+S + P N +P++ + F DGS E+VD I+ CTGY +H+PFL++
Sbjct: 224 LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLND 283
Query: 699 SCGIKVVNKNVQP--LYKHTINIEHPTMFILGV 729
+ V N + P LYK + ++P F +G+
Sbjct: 284 DLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGM 315
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 40 FEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY---HHKGHPDKS 96
FE+ + GG W YT +TG D+ G PVHSSMY+ L +N PKE +E + Y H G P S
Sbjct: 37 FEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIAS 96
Query: 97 YIAANDVLEYLNDFADNFNLRNLCLVNKNVQ 127
Y + +Y+ + +R N V+
Sbjct: 97 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVR 127
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 298 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 357
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 236 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 294
Query: 358 P--LYKHLINIEHPSMCIIG 375
P LYK ++ ++P IG
Sbjct: 295 PLNLYKGVVWEDNPKFFYIG 314
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 748 GPGG---LTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL 803
GP G L A + E G FE+ + GG W YT G D+ G PVHSSMY+ L
Sbjct: 11 GPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYL 70
Query: 804 KTNLPKDLMELCGYG---HKGNADKSYIGAKDVLENY 837
+N PK+ +E Y H G SY ++VL +Y
Sbjct: 71 WSNGPKECLEFADYTFDEHFGKPIASY-PPREVLWDY 106
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 106 YLNDFADNFNLRNLCLVNKNVQPL--YKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163
+LND +LR + N + PL YK ++ ++P IG+ F +FD Q +
Sbjct: 280 FLND-----DLR--LVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYA 332
Query: 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESP 223
++ G + LPSK EM AD+ + R +E A + + + Y+ +L M S
Sbjct: 333 RDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGD-YIQNLIDMTDYPSF 388
Query: 224 VPPVLLKIYFESFARCSEDFTEFRKDKYKII 254
P K + E E+ FR Y+ +
Sbjct: 389 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 419
Score = 37.0 bits (84), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 498 NYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDI 546
++S P P+F+G + I+H+H++R F K ++VGS S DI
Sbjct: 164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSSSAEDI 212
>pdb|2XVE|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVE|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVH|A Chain A, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|B Chain B, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
pdb|2XVH|C Chain C, Crystal Structure Of Bacterial Flavin Containing
Monooxygenase In Complex With Nadp
Length = 464
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 30/282 (10%)
Query: 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+++ P PEF+G + ILH+ D+R F K ++VGS S DI G Q
Sbjct: 164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI-------GSQC 216
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDG 955
G+ + +S + P N +P++ + F DG
Sbjct: 217 YKYGAKK----------------LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADG 260
Query: 956 SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP--LYKHTINIEHPTMFILGVPRHT 1013
S E+VD I+ CTGY +H+PFL++ + V N + P LYK + ++P F +G+
Sbjct: 261 SSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQW 319
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENF 1073
FN+FD Q + ++ G + LPSKEEM AD+ L + G ++
Sbjct: 320 YSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG----DY 375
Query: 1074 LNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQ 1115
+ ++I M S P K + + E+ + FR++ Y+
Sbjct: 376 IQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYR 417
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 579 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
+++ P PEF+G + ILH+ D+R F K ++VGS S DI +
Sbjct: 164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKK 223
Query: 639 FLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHE 698
+S + P N +P++ + F DGS E+VD I+ CTGY +H+PFL++
Sbjct: 224 LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLND 283
Query: 699 SCGIKVVNKNVQP--LYKHTINIEHPTMFILGV 729
+ V N + P LYK + ++P F +G+
Sbjct: 284 DLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGM 315
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 40 FEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY---HHKGHPDKS 96
FE+ + GG W YT +TG D+ G PVHSSMY+ L +N PKE +E + Y H G P S
Sbjct: 37 FEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIAS 96
Query: 97 YIAANDVLEYLNDFADNFNLRNLCLVNKNVQ 127
Y + +Y+ + +R N V+
Sbjct: 97 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVR 127
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 298 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 357
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 236 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 294
Query: 358 P--LYKHLINIEHPSMCIIG 375
P LYK ++ ++P IG
Sbjct: 295 PLNLYKGVVWEDNPKFFYIG 314
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 748 GPGGLTATKRLTEAGNGFT----CTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL 803
GP G+ + A FE+ + GG W YT G D+ G PVHSSMY+ L
Sbjct: 11 GPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYL 70
Query: 804 KTNLPKDLMELCGYG---HKGNADKSYIGAKDVLENY 837
+N PK+ +E Y H G SY ++VL +Y
Sbjct: 71 WSNGPKECLEFADYTFDEHFGKPIASY-PPREVLWDY 106
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 106 YLNDFADNFNLRNLCLVNKNVQPL--YKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163
+LND +LR + N + PL YK ++ ++P IG+ F +FD Q +
Sbjct: 280 FLND-----DLR--LVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYA 332
Query: 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESP 223
++ G + LPSK EM AD+ + R +E A + + + Y+ +L M S
Sbjct: 333 RDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGD-YIQNLIDMTDYPSF 388
Query: 224 VPPVLLKIYFESFARCSEDFTEFRKDKYKII 254
P K + E E+ FR Y+ +
Sbjct: 389 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 419
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 498 NYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDI 546
++S P P+F+G + I+H+H++R F K ++VGS S DI
Sbjct: 164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI 212
>pdb|2XLR|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
pdb|2XLR|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78asp Mutant
Length = 461
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 30/282 (10%)
Query: 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+++ P PEF+G + ILH+ D+R F K ++VGS S DI G Q
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI-------GSQC 221
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDG 955
G+ + +S + P N +P++ + F DG
Sbjct: 222 YKYGAKK----------------LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADG 265
Query: 956 SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP--LYKHTINIEHPTMFILGVPRHT 1013
S E+VD I+ CTGY +H+PFL++ + V N + P LYK + ++P F +G+
Sbjct: 266 SSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQW 324
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENF 1073
FN+FD Q + ++ G + LPSKEEM AD+ L + G ++
Sbjct: 325 YSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG----DY 380
Query: 1074 LNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQ 1115
+ ++I M S P K + + E+ + FR++ Y+
Sbjct: 381 IQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYR 422
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 579 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
+++ P PEF+G + ILH+ D+R F K ++VGS S DI +
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKK 228
Query: 639 FLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHE 698
+S + P N +P++ + F DGS E+VD I+ CTGY +H+PFL++
Sbjct: 229 LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLND 288
Query: 699 SCGIKVVNKNVQP--LYKHTINIEHPTMFILGV 729
+ V N + P LYK + ++P F +G+
Sbjct: 289 DLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGM 320
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 40 FEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY---HHKGHPDKS 96
FE+ + GG W YT +TG D+ G PVHSSMY+ L ++ PKE +E + Y H G P S
Sbjct: 42 FEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSDGPKECLEFADYTFDEHFGKPIAS 101
Query: 97 YIAANDVLEYLNDFADNFNLRNLCLVNKNVQ 127
Y + +Y+ + +R N V+
Sbjct: 102 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVR 132
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 298 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 357
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 241 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 299
Query: 358 P--LYKHLINIEHPSMCIIG 375
P LYK ++ ++P IG
Sbjct: 300 PLNLYKGVVWEDNPKFFYIG 319
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 748 GPGGLTATKRLTEAGNGFT----CTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL 803
GP G+ + A FE+ + GG W YT G D+ G PVHSSMY+ L
Sbjct: 16 GPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYL 75
Query: 804 KTNLPKDLMELCGYG---HKGNADKSYIGAKDVLENY 837
++ PK+ +E Y H G SY ++VL +Y
Sbjct: 76 WSDGPKECLEFADYTFDEHFGKPIASY-PPREVLWDY 111
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 106 YLNDFADNFNLRNLCLVNKNVQPL--YKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163
+LND +LR + N + PL YK ++ ++P IG+ F +FD Q +
Sbjct: 285 FLND-----DLR--LVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYA 337
Query: 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESP 223
++ G + LPSK EM AD+ + R +E A + + + Y+ +L M S
Sbjct: 338 RDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGD-YIQNLIDMTDYPSF 393
Query: 224 VPPVLLKIYFESFARCSEDFTEFRKDKYKII 254
P K + E E+ FR Y+ +
Sbjct: 394 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 424
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 498 NYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDI 546
++S P P+F+G + I+H+H++R F K ++VGS S DI
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
>pdb|2XLS|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
pdb|2XLS|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Asn78lys Mutant
Length = 461
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 30/282 (10%)
Query: 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+++ P PEF+G + ILH+ D+R F K ++VGS S DI G Q
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI-------GSQC 221
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDG 955
G+ + +S + P N +P++ + F DG
Sbjct: 222 YKYGAKK----------------LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADG 265
Query: 956 SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP--LYKHTINIEHPTMFILGVPRHT 1013
S E+VD I+ CTGY +H+PFL++ + V N + P LYK + ++P F +G+
Sbjct: 266 SSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQW 324
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENF 1073
FN+FD Q + ++ G + LPSKEEM AD+ L + G ++
Sbjct: 325 YSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG----DY 380
Query: 1074 LNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQ 1115
+ ++I M S P K + + E+ + FR++ Y+
Sbjct: 381 IQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYR 422
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 579 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
+++ P PEF+G + ILH+ D+R F K ++VGS S DI +
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKK 228
Query: 639 FLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHE 698
+S + P N +P++ + F DGS E+VD I+ CTGY +H+PFL++
Sbjct: 229 LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLND 288
Query: 699 SCGIKVVNKNVQP--LYKHTINIEHPTMFILGV 729
+ V N + P LYK + ++P F +G+
Sbjct: 289 DLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGM 320
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 40 FEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY---HHKGHPDKS 96
FE+ + GG W YT +TG D+ G PVHSSMY+ L + PKE +E + Y H G P S
Sbjct: 42 FEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSKGPKECLEFADYTFDEHFGKPIAS 101
Query: 97 YIAANDVLEYLNDFADNFNLRNLCLVNKNVQ 127
Y + +Y+ + +R N V+
Sbjct: 102 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVR 132
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 298 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 357
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 241 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 299
Query: 358 P--LYKHLINIEHPSMCIIG 375
P LYK ++ ++P IG
Sbjct: 300 PLNLYKGVVWEDNPKFFYIG 319
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 45/97 (46%), Gaps = 8/97 (8%)
Query: 748 GPGGLTATKRLTEAGNGFT----CTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL 803
GP G+ + A FE+ + GG W YT G D+ G PVHSSMY+ L
Sbjct: 16 GPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYL 75
Query: 804 KTNLPKDLMELCGYG---HKGNADKSYIGAKDVLENY 837
+ PK+ +E Y H G SY ++VL +Y
Sbjct: 76 WSKGPKECLEFADYTFDEHFGKPIASY-PPREVLWDY 111
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 106 YLNDFADNFNLRNLCLVNKNVQPL--YKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163
+LND +LR + N + PL YK ++ ++P IG+ F +FD Q +
Sbjct: 285 FLND-----DLR--LVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYA 337
Query: 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESP 223
++ G + LPSK EM AD+ + R +E A + + + Y+ +L M S
Sbjct: 338 RDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGD-YIQNLIDMTDYPSF 393
Query: 224 VPPVLLKIYFESFARCSEDFTEFRKDKYKII 254
P K + E E+ FR Y+ +
Sbjct: 394 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 424
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 498 NYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDI 546
++S P P+F+G + I+H+H++R F K ++VGS S DI
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
>pdb|2VQ7|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQ7|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Native Data
pdb|2VQB|A Chain A, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|B Chain B, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|C Chain C, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2VQB|D Chain D, Bacterial Flavin-Containing Monooxygenase In Complex With
Nadp: Soaking In Aerated Solution
pdb|2XLT|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLT|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With 3-Acetylpyridine Adenine Dinucleotide
Phosphate (Apadp)
pdb|2XLU|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
pdb|2XLU|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In
Oxygen-Activation By Flavin-Containing Monooxygenase:
Complex With Thionadp
Length = 461
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 30/282 (10%)
Query: 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+++ P PEF+G + ILH+ D+R F K ++VGS S DI G Q
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI-------GSQC 221
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDG 955
G+ + +S + P N +P++ + F DG
Sbjct: 222 YKYGAKK----------------LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADG 265
Query: 956 SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP--LYKHTINIEHPTMFILGVPRHT 1013
S E+VD I+ CTGY +H+PFL++ + V N + P LYK + ++P F +G+
Sbjct: 266 SSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQW 324
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENF 1073
FN+FD Q + ++ G + LPSKEEM AD+ L + G ++
Sbjct: 325 YSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG----DY 380
Query: 1074 LNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQ 1115
+ ++I M S P K + + E+ + FR++ Y+
Sbjct: 381 IQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYR 422
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 579 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
+++ P PEF+G + ILH+ D+R F K ++VGS S DI +
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKK 228
Query: 639 FLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHE 698
+S + P N +P++ + F DGS E+VD I+ CTGY +H+PFL++
Sbjct: 229 LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLND 288
Query: 699 SCGIKVVNKNVQP--LYKHTINIEHPTMFILGV 729
+ V N + P LYK + ++P F +G+
Sbjct: 289 DLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGM 320
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 40 FEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY---HHKGHPDKS 96
FE+ + GG W YT +TG D+ G PVHSSMY+ L +N PKE +E + Y H G P S
Sbjct: 42 FEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIAS 101
Query: 97 YIAANDVLEYLNDFADNFNLRNLCLVNKNVQ 127
Y + +Y+ + +R N V+
Sbjct: 102 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVR 132
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 298 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 357
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 241 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 299
Query: 358 P--LYKHLINIEHPSMCIIG 375
P LYK ++ ++P IG
Sbjct: 300 PLNLYKGVVWEDNPKFFYIG 319
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 748 GPGGLTATKRLTEAGNGFT----CTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL 803
GP G+ + A FE+ + GG W YT G D+ G PVHSSMY+ L
Sbjct: 16 GPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYL 75
Query: 804 KTNLPKDLMELCGYG---HKGNADKSYIGAKDVLENY 837
+N PK+ +E Y H G SY ++VL +Y
Sbjct: 76 WSNGPKECLEFADYTFDEHFGKPIASY-PPREVLWDY 111
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 106 YLNDFADNFNLRNLCLVNKNVQPL--YKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163
+LND +LR + N + PL YK ++ ++P IG+ F +FD Q +
Sbjct: 285 FLND-----DLR--LVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYA 337
Query: 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESP 223
++ G + LPSK EM AD+ + R +E A + + + Y+ +L M S
Sbjct: 338 RDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGD-YIQNLIDMTDYPSF 393
Query: 224 VPPVLLKIYFESFARCSEDFTEFRKDKYKII 254
P K + E E+ FR Y+ +
Sbjct: 394 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 424
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 498 NYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDI 546
++S P P+F+G + I+H+H++R F K ++VGS S DI
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
>pdb|2XLP|A Chain A, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|B Chain B, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|C Chain C, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
pdb|2XLP|D Chain D, Joint-Functions Of Protein Residues And Nadp(H) In Oxygen-
Activation By Flavin-Containing Monooxygenase: Asn78ser
Mutant
Length = 461
Score = 106 bits (265), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 125/282 (44%), Gaps = 30/282 (10%)
Query: 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+++ P PEF+G + ILH+ D+R F K ++VGS S DI G Q
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI-------GSQC 221
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDG 955
G+ + +S + P N +P++ + F DG
Sbjct: 222 YKYGAKK----------------LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADG 265
Query: 956 SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP--LYKHTINIEHPTMFILGVPRHT 1013
S E+VD I+ CTGY +H+PFL++ + V N + P LYK + ++P F +G+
Sbjct: 266 SSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQW 324
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENF 1073
FN+FD Q + ++ G + LPSKEEM AD+ L + G ++
Sbjct: 325 YSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWREKELTLVTAEEMYTYQG----DY 380
Query: 1074 LNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQ 1115
+ ++I M S P K + + E+ + FR++ Y+
Sbjct: 381 IQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYR 422
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 76/153 (49%), Gaps = 3/153 (1%)
Query: 579 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
+++ P PEF+G + ILH+ D+R F K ++VGS S DI +
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKK 228
Query: 639 FLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHE 698
+S + P N +P++ + F DGS E+VD I+ CTGY +H+PFL++
Sbjct: 229 LISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLND 288
Query: 699 SCGIKVVNKNVQP--LYKHTINIEHPTMFILGV 729
+ V N + P LYK + ++P F +G+
Sbjct: 289 DLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGM 320
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 48/91 (52%), Gaps = 3/91 (3%)
Query: 40 FEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY---HHKGHPDKS 96
FE+ + GG W YT +TG D+ G PVHSSMY+ L ++ PKE +E + Y H G P S
Sbjct: 42 FEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSSGPKECLEFADYTFDEHFGKPIAS 101
Query: 97 YIAANDVLEYLNDFADNFNLRNLCLVNKNVQ 127
Y + +Y+ + +R N V+
Sbjct: 102 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVR 132
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 298 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 357
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 241 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 299
Query: 358 P--LYKHLINIEHPSMCIIG 375
P LYK ++ ++P IG
Sbjct: 300 PLNLYKGVVWEDNPKFFYIG 319
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 8/97 (8%)
Query: 748 GPGGLTATKRLTEAGNGFT----CTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL 803
GP G+ + A FE+ + GG W YT G D+ G PVHSSMY+ L
Sbjct: 16 GPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYL 75
Query: 804 KTNLPKDLMELCGYG---HKGNADKSYIGAKDVLENY 837
++ PK+ +E Y H G SY ++VL +Y
Sbjct: 76 WSSGPKECLEFADYTFDEHFGKPIASY-PPREVLWDY 111
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 106 YLNDFADNFNLRNLCLVNKNVQPL--YKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163
+LND +LR + N + PL YK ++ ++P IG+ F +FD Q +
Sbjct: 285 FLND-----DLR--LVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYA 337
Query: 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESP 223
++ G + LPSK EM AD+ + R +E A + + + Y+ +L M S
Sbjct: 338 RDVIMGRLPLPSKEEMKADS---MAWREKELTLVTAEEMYTYQGD-YIQNLIDMTDYPSF 393
Query: 224 VPPVLLKIYFESFARCSEDFTEFRKDKYKII 254
P K + E E+ FR Y+ +
Sbjct: 394 DIPATNKTFLEWKHHKKENIMTFRDHSYRSL 424
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 498 NYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDI 546
++S P P+F+G + I+H+H++R F K ++VGS S DI
Sbjct: 169 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI 217
>pdb|2XVF|A Chain A, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|B Chain B, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
pdb|2XVF|C Chain C, Crystal Structure Of Bacterial Flavin-Containing
Monooxygenase
Length = 464
Score = 99.4 bits (246), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 64/213 (30%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+++ P PEF+G + ILH+ D+R F K ++VGS S DI G Q
Sbjct: 164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI-------GSQC 216
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDG 955
G+ + +S + P N +P++ + F DG
Sbjct: 217 YKYGAKK----------------LISCYRTAPXGYKWPENWDERPNLVRVDTENAYFADG 260
Query: 956 SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP--LYKHTINIEHPTMFILGVPRHT 1013
S E+VD I+ CTGY +H+PFL++ + V N + P LYK + ++P F +G
Sbjct: 261 SSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIGXQDQW 319
Query: 1014 LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADT 1046
FN FD Q + ++ G + LPSKEE AD+
Sbjct: 320 YSFNXFDAQAWYARDVIXGRLPLPSKEEXKADS 352
Score = 81.6 bits (200), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 75/152 (49%), Gaps = 3/152 (1%)
Query: 579 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
+++ P PEF+G + ILH+ D+R F K ++VGS S DI +
Sbjct: 164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKK 223
Query: 639 FLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHE 698
+S + P N +P++ + F DGS E+VD I+ CTGY +H+PFL++
Sbjct: 224 LISCYRTAPXGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLND 283
Query: 699 SCGIKVVNKNVQP--LYKHTINIEHPTMFILG 728
+ V N + P LYK + ++P F +G
Sbjct: 284 DLRL-VTNNRLWPLNLYKGVVWEDNPKFFYIG 314
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 40 FEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY---HHKGHPDKS 96
FE+ + GG W YT +TG D+ G PVHSS Y+ L +N PKE +E + Y H G P S
Sbjct: 37 FEKQADWGGQWNYTWRTGLDENGEPVHSSXYRYLWSNGPKECLEFADYTFDEHFGKPIAS 96
Query: 97 YIAANDVLEYLNDFADNFNLRNLCLVNKNVQ 127
Y + +Y+ + +R N V+
Sbjct: 97 YPPREVLWDYIKGRVEKAGVRKYIRFNTAVR 127
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 3/80 (3%)
Query: 298 RFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 357
++P N ++P++ + F DGS E+VD I+ CTGY + +PFL++ + V N +
Sbjct: 236 KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRL-VTNNRLW 294
Query: 358 P--LYKHLINIEHPSMCIIG 375
P LYK ++ ++P IG
Sbjct: 295 PLNLYKGVVWEDNPKFFYIG 314
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 748 GPGG---LTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL 803
GP G L A + E G FE+ + GG W YT G D+ G PVHSS Y+ L
Sbjct: 11 GPSGXAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSXYRYL 70
Query: 804 KTNLPKDLMELCGYG---HKGNADKSYIGAKDVLENY 837
+N PK+ +E Y H G SY ++VL +Y
Sbjct: 71 WSNGPKECLEFADYTFDEHFGKPIASY-PPREVLWDY 106
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%), Gaps = 9/80 (11%)
Query: 106 YLNDFADNFNLRNLCLVNKNVQPL--YKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163
+LND +LR + N + PL YK ++ ++P IG F FD Q +
Sbjct: 280 FLND-----DLR--LVTNNRLWPLNLYKGVVWEDNPKFFYIGXQDQWYSFNXFDAQAWYA 332
Query: 164 LQLMQGHVTLPSKAEMLADT 183
++ G + LPSK E AD+
Sbjct: 333 RDVIXGRLPLPSKEEXKADS 352
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 498 NYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDI 546
++S P P+F+G + I+H+H++R F K ++VGS S DI
Sbjct: 164 HFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDI 212
>pdb|2GV8|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GV8|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase (Fmo)
From S.Pombe And Nadph Cofactor Complex
pdb|2GVC|A Chain A, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|B Chain B, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|D Chain D, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
pdb|2GVC|E Chain E, Crystal Structure Of Flavin-Containing Monooxygenase
(Fmo)from S.Pombe And Substrate (Methimazole) Complex
Length = 447
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 154/426 (36%), Gaps = 114/426 (26%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG-----------------CDQ 790
GP GL K L T FE+ + GG W YT +
Sbjct: 15 GPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGP 74
Query: 791 YGLPVHSS-MYKSLKTNLPKDLMELCGYGHK----------------------------- 820
LPV+ S +Y+ L+TN P +L C K
Sbjct: 75 AALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKL 134
Query: 821 -----------GNADKSYIG-------AKDVLE-------NYNHPIYPEFKGKD--MCQI 853
G+ +Y G +KD+ + +Y P P KG D +
Sbjct: 135 ATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAV 194
Query: 854 P--ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDI 911
P +LHS +R PE F G+ +VVG S D+ + K + S G DI
Sbjct: 195 PGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIY-QSLLGGGDI---- 249
Query: 912 ATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG--VRFQDGS-YEQVDIILCCTG 968
+E + + P++ + PT + + G +D ++ CTG
Sbjct: 250 -----------QNESLQQV---------PEITKFDPTTREIYLKGGKVLSNIDRVIYCTG 289
Query: 969 YSNHYPFLH----ESCGIKVVN--KNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQ 1022
Y PF +S K+++ +V +Y+H I PT+ +G+ H + F Q
Sbjct: 290 YLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQ 349
Query: 1023 VRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGH-RSENFLNSIISMM 1081
++ G + LPSKEE L Q+ L G N N +H + + + ++N +
Sbjct: 350 AAFLARVWSGRLKLPSKEEQL--KWQDELXFSLSGAN-NXYHSLDYPKDATYINKLHDWC 406
Query: 1082 RDESPL 1087
+ +P+
Sbjct: 407 KQATPV 412
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 17/172 (9%)
Query: 579 NYNHPIYPEFKGKD--MCQIP--ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATR 634
+Y P P KG D +P +LHS +R PE F G+ +VVG S D+ +
Sbjct: 175 HYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPV 234
Query: 635 ASTVFLSHHSERVTSLCLPNNVVLK-PDVAELTPTG--VRFQDGS-YEQVDIILCCTGYT 690
A + + + N + + P++ + PT + + G +D ++ CTGY
Sbjct: 235 AKHPI---YQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYL 291
Query: 691 NHYPFLH----ESCGIKVVN--KNVQPLYKHTINIEHPTMFILGVSFTIEEF 736
PF +S K+++ +V +Y+H I PT+ +G++ + F
Sbjct: 292 YSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPF 343
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 125 NVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTE 184
+V +Y+H+ I P++ +G+ V F Q F ++ G + LPSK E L
Sbjct: 315 HVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQL--KW 372
Query: 185 QDVRGRLREGQNPNAFHIMG-QRSEKYLNSLCSMMRDESPV 224
QD G N N +H + + Y+N L + +PV
Sbjct: 373 QDELXFSLSGAN-NXYHSLDYPKDATYINKLHDWCKQATPV 412
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 307 PDIAELTPTG--VRFQDGS-YEQVDIILYCTGYTYRYPFLH----ESCGIKVVN--KNVQ 357
P+I + PT + + G +D ++YCTGY Y PF +S K+++ +V
Sbjct: 258 PEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVH 317
Query: 358 PLYKHLINIEHPSMCIIG 375
+Y+H+ I P++ +G
Sbjct: 318 NVYQHIFYIPDPTLAFVG 335
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 494 ISSRNYSNPVYPDFKGKD--VCQIP--IMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHD 549
I + +Y P P+ KG D +P ++HS +R PE F G+ +VVG S D+
Sbjct: 171 ICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRH 230
Query: 550 ISTEA 554
++ A
Sbjct: 231 LTPVA 235
>pdb|1VQW|A Chain A, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
pdb|1VQW|B Chain B, Crystal Structure Of A Protein With Similarity To Flavin-
Containing Monooxygenases And To Mammalian
Dimethylalanine Monooxygenases
Length = 457
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 96/426 (22%), Positives = 154/426 (36%), Gaps = 114/426 (26%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG-----------------CDQ 790
GP GL K L T FE+ + GG W YT +
Sbjct: 17 GPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGP 76
Query: 791 YGLPVHSS-MYKSLKTNLPKDLMELCGYGHK----------------------------- 820
LPV+ S +Y+ L+TN P +L C K
Sbjct: 77 AALPVYPSPLYRDLQTNTPIELXGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKL 136
Query: 821 -----------GNADKSYIG-------AKDVLE-------NYNHPIYPEFKGKD--MCQI 853
G+ +Y G +KD+ + +Y P P KG D +
Sbjct: 137 ATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAV 196
Query: 854 P--ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDI 911
P +LHS +R PE F G+ +VVG S D+ + K + S G DI
Sbjct: 197 PGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIY-QSLLGGGDI---- 251
Query: 912 ATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG--VRFQDGS-YEQVDIILCCTG 968
+E + + P++ + PT + + G +D ++ CTG
Sbjct: 252 -----------QNESLQQV---------PEITKFDPTTREIYLKGGKVLSNIDRVIYCTG 291
Query: 969 YSNHYPFLH----ESCGIKVVN--KNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQ 1022
Y PF +S K+++ +V +Y+H I PT+ +G+ H + F Q
Sbjct: 292 YLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQ 351
Query: 1023 VRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGH-RSENFLNSIISMM 1081
++ G + LPSKEE L Q+ L G N N +H + + + ++N +
Sbjct: 352 AAFLARVWSGRLKLPSKEEQL--KWQDELXFSLSGAN-NXYHSLDYPKDATYINKLHDWC 408
Query: 1082 RDESPL 1087
+ +P+
Sbjct: 409 KQATPV 414
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 76/172 (44%), Gaps = 17/172 (9%)
Query: 579 NYNHPIYPEFKGKD--MCQIP--ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATR 634
+Y P P KG D +P +LHS +R PE F G+ +VVG S D+ +
Sbjct: 177 HYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPV 236
Query: 635 ASTVFLSHHSERVTSLCLPNNVVLK-PDVAELTPTG--VRFQDGS-YEQVDIILCCTGYT 690
A + + + N + + P++ + PT + + G +D ++ CTGY
Sbjct: 237 AKHPI---YQSLLGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYL 293
Query: 691 NHYPFLH----ESCGIKVVN--KNVQPLYKHTINIEHPTMFILGVSFTIEEF 736
PF +S K+++ +V +Y+H I PT+ +G++ + F
Sbjct: 294 YSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPF 345
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 125 NVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTE 184
+V +Y+H+ I P++ +G+ V F Q F ++ G + LPSK E L
Sbjct: 317 HVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQL--KW 374
Query: 185 QDVRGRLREGQNPNAFHIMG-QRSEKYLNSLCSMMRDESPV 224
QD G N N +H + + Y+N L + +PV
Sbjct: 375 QDELXFSLSGAN-NXYHSLDYPKDATYINKLHDWCKQATPV 414
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 307 PDIAELTPTG--VRFQDGS-YEQVDIILYCTGYTYRYPFLH----ESCGIKVVN--KNVQ 357
P+I + PT + + G +D ++YCTGY Y PF +S K+++ +V
Sbjct: 260 PEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVH 319
Query: 358 PLYKHLINIEHPSMCIIG 375
+Y+H+ I P++ +G
Sbjct: 320 NVYQHIFYIPDPTLAFVG 337
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 494 ISSRNYSNPVYPDFKGKD--VCQIP--IMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHD 549
I + +Y P P+ KG D +P ++HS +R PE F G+ +VVG S D+
Sbjct: 173 ICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRH 232
Query: 550 ISTEA 554
++ A
Sbjct: 233 LTPVA 237
>pdb|4A9W|A Chain A, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
pdb|4A9W|B Chain B, Flavin-Containing Monooxygenase From Stenotrophomonas
Maltophilia
Length = 357
Score = 59.7 bits (143), Expect = 8e-09, Method: Composition-based stats.
Identities = 45/168 (26%), Positives = 70/168 (41%), Gaps = 46/168 (27%)
Query: 586 PEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHS- 644
PE++G + LHS Y TP PFAG + ++G G SG I +++T A T +++ H
Sbjct: 137 PEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEP 196
Query: 645 -------------ERVTSLC----------LP----NNVVLKPDV--------------- 662
ER T LP ++V+ P V
Sbjct: 197 AFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDIVMVPPVLDARARGVLAAVPPP 256
Query: 663 AELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHESCGIKVVNKNVQ 710
A +PTG+++ DG+ D ++ CTG+ P L G+ +V Q
Sbjct: 257 ARFSPTGMQWADGTERAFDAVIWCTGFR---PALSHLKGLDLVTPQGQ 301
Score = 57.0 bits (136), Expect = 6e-08, Method: Composition-based stats.
Identities = 49/195 (25%), Positives = 83/195 (42%), Gaps = 33/195 (16%)
Query: 843 PEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902
PE++G + LHS Y TP PFAG + ++G G SG I +++T + +
Sbjct: 137 PEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTWITQHEP 196
Query: 903 SGLDITLD---IATRASTVFLSHHSERVTSLCLP----NNVVLKPDV------------- 942
+ L +D + RA+ + + R LP ++V+ P V
Sbjct: 197 AFLADDVDGRVLFERATERWKAQQEGREPD--LPPGGFGDIVMVPPVLDARARGVLAAVP 254
Query: 943 --AELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIE 1000
A +PTG+++ DG+ D ++ CTG+ P L G+ +V Q + ++
Sbjct: 255 PPARFSPTGMQWADGTERAFDAVIWCTGFR---PALSHLKGLDLVTPQGQ------VEVD 305
Query: 1001 HPTMFILGVPRHTLL 1015
+ L VP LL
Sbjct: 306 GSGLRALAVPSVWLL 320
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 21/52 (40%), Positives = 30/52 (57%)
Query: 505 PDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATT 556
P+++G + +HS Y TP PFAG R ++G G SG I ++ST A T
Sbjct: 137 PEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAET 188
Score = 34.7 bits (78), Expect = 0.28, Method: Composition-based stats.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 307 PDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNK--NVQPLYKHLI 364
P A +PTG+++ DG+ D +++CTG+ P L G+ +V V+ L
Sbjct: 254 PPPARFSPTGMQWADGTERAFDAVIWCTGFR---PALSHLKGLDLVTPQGQVEVDGSGLR 310
Query: 365 NIEHPSMCIIGY 376
+ PS+ ++GY
Sbjct: 311 ALAVPSVWLLGY 322
>pdb|2YLZ|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Met446gly
Mutant
Length = 542
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEY-RTPEPFAGKRAVVVGSGPSGLDITHDIS 551
I++S S P P+F G + H+ + P F+G+R V+G+G SG+ ++ I+
Sbjct: 147 IMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIA 206
Query: 552 TEATTVSAYLRFDNKTITKRKKFDKGRNYNHPIYPEF 588
+A + + R + + R N P+ PEF
Sbjct: 207 KQAAELFVFQRTPHFAVPAR---------NAPLDPEF 234
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 583 PIYPEFKGKDMCQIPILHSRDY-RTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLS 641
P P F G + H+ ++ P F+G++ V+G+G SG+ ++ IA +A+ +F+
Sbjct: 156 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV- 214
Query: 642 HHSERVTSLCLP-NNVVLKPD-VAELTPTGVRFQDGS 676
+R +P N L P+ +A+L F++ S
Sbjct: 215 --FQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|2YLX|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Asp66ala
Mutant In Complex With Nadp And Mes
Length = 542
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEY-RTPEPFAGKRAVVVGSGPSGLDITHDIS 551
I++S S P P+F G + H+ + P F+G+R V+G+G SG+ ++ I+
Sbjct: 147 IMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIA 206
Query: 552 TEATTVSAYLRFDNKTITKRKKFDKGRNYNHPIYPEF 588
+A + + R + + R N P+ PEF
Sbjct: 207 KQAAELFVFQRTPHFAVPAR---------NAPLDPEF 234
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 583 PIYPEFKGKDMCQIPILHSRDY-RTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLS 641
P P F G + H+ ++ P F+G++ V+G+G SG+ ++ IA +A+ +F+
Sbjct: 156 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV- 214
Query: 642 HHSERVTSLCLP-NNVVLKPD-VAELTPTGVRFQDGS 676
+R +P N L P+ +A+L F++ S
Sbjct: 215 --FQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|2YLW|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Mes
pdb|2YM1|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant In Complex With Nadp
pdb|2YM2|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Arg337lys
Mutant Reduced State With Nadp
Length = 542
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEY-RTPEPFAGKRAVVVGSGPSGLDITHDIS 551
I++S S P P+F G + H+ + P F+G+R V+G+G SG+ ++ I+
Sbjct: 147 IMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIA 206
Query: 552 TEATTVSAYLRFDNKTITKRKKFDKGRNYNHPIYPEF 588
+A + + R + + R N P+ PEF
Sbjct: 207 KQAAELFVFQRTPHFAVPAR---------NAPLDPEF 234
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 583 PIYPEFKGKDMCQIPILHSRDY-RTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLS 641
P P F G + H+ ++ P F+G++ V+G+G SG+ ++ IA +A+ +F+
Sbjct: 156 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV- 214
Query: 642 HHSERVTSLCLP-NNVVLKPD-VAELTPTGVRFQDGS 676
+R +P N L P+ +A+L F++ S
Sbjct: 215 --FQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|1W4X|A Chain A, Phenylacetone Monooxygenase, A Baeyer-villiger
Monooxygenase
pdb|2YLR|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp
pdb|2YLS|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Reduced
Enzyme Bound To Nadp
pdb|2YLT|A Chain A, Snapshots Of Enzymatic Baeyer-Villiger Catalysis: Oxygen
Activation And Intermediate Stabilization: Complex With
Nadp And Mes
Length = 542
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 10/97 (10%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEY-RTPEPFAGKRAVVVGSGPSGLDITHDIS 551
I++S S P P+F G + H+ + P F+G+R V+G+G SG+ ++ I+
Sbjct: 147 IMASGQLSVPQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIA 206
Query: 552 TEATTVSAYLRFDNKTITKRKKFDKGRNYNHPIYPEF 588
+A + + R + + R N P+ PEF
Sbjct: 207 KQAAELFVFQRTPHFAVPAR---------NAPLDPEF 234
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 583 PIYPEFKGKDMCQIPILHSRDY-RTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLS 641
P P F G + H+ ++ P F+G++ V+G+G SG+ ++ IA +A+ +F+
Sbjct: 156 PQLPNFPGLKDFAGNLYHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFV- 214
Query: 642 HHSERVTSLCLP-NNVVLKPD-VAELTPTGVRFQDGS 676
+R +P N L P+ +A+L F++ S
Sbjct: 215 --FQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES 249
>pdb|3GWD|A Chain A, Closed Crystal Structure Of Cyclohexanone Monooxygenase
pdb|3GWF|A Chain A, Open Crystal Structure Of Cyclohexanone Monooxygenase
Length = 540
Score = 37.7 bits (86), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 34 GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKGHP 93
G T F++ D GGTW + G S +Y+ + +++++ S +
Sbjct: 32 GLTTVGFDKADGPGGTWYWNRYPGALS---DTESHLYR---FSFDRDLLQESTWK----- 80
Query: 94 DKSYIAANDVLEYLNDFADNFNLR 117
+YI ++LEYL D D F+LR
Sbjct: 81 -TTYITQPEILEYLEDVVDRFDLR 103
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 489 RLTYIISSRNYSNPV-YPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDIT 547
R Y++++ + + +P+ G D + +H+ + + AG+R V+G+G +G +
Sbjct: 135 RAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVI 194
Query: 548 HDISTEATTVSAYLR 562
++ E ++ ++R
Sbjct: 195 TSLAPEVEHLTVFVR 209
>pdb|3UCL|A Chain A, Cyclohexanone-Bound Crystal Structure Of Cyclohexanone
Monooxygenase In The Rotated Conformation
Length = 573
Score = 37.4 bits (85), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 39/84 (46%), Gaps = 12/84 (14%)
Query: 34 GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKGHP 93
G T F++ D GGTW + G S +Y+ + +++++ S +
Sbjct: 65 GLTTVGFDKADGPGGTWYWNRYPGALS---DTESHLYR---FSFDRDLLQESTWK----- 113
Query: 94 DKSYIAANDVLEYLNDFADNFNLR 117
+YI ++LEYL D D F+LR
Sbjct: 114 -TTYITQPEILEYLEDVVDRFDLR 136
Score = 34.3 bits (77), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/75 (20%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 489 RLTYIISSRNYSNPV-YPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDIT 547
R Y++++ + + +P+ G D + +H+ + + AG+R V+G+G +G +
Sbjct: 168 RAKYVVNAVGLLSAINFPNLPGLDTFEGETIHTAAWPEGKSLAGRRVGVIGTGSTGQQVI 227
Query: 548 HDISTEATTVSAYLR 562
++ E ++ ++R
Sbjct: 228 TSLAPEVEHLTVFVR 242
>pdb|3MTG|A Chain A, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
pdb|3MTG|B Chain B, Crystal Structure Of Human S-Adenosyl Homocysteine
Hydrolase Protein
Length = 444
Score = 36.2 bits (82), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 27/151 (17%)
Query: 839 HPIYPEFKGKDMCQIPILHSRDYRTPEPF----AGKQAVVVGSGQSGLDITLDIATTGKQ 894
H +Y K +C +P ++ D T + F +++++ GL T D+ GKQ
Sbjct: 174 HRLYQLSKAGKLC-VPAMNVNDSVTKQKFDNLYCCRESIL-----DGLKRTTDVMFGGKQ 227
Query: 895 AVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQD 954
VV G G+ G + + V+++ + +C + V +L
Sbjct: 228 VVVCGYGEVGKGCCAALKALGAIVYITE----IDPICALQACMDGFRVVKLNEV------ 277
Query: 955 GSYEQVDIILCCTGYSN-----HYPFLHESC 980
QVD+++ CTG N H + SC
Sbjct: 278 --IRQVDVVITCTGNKNVVTREHLDRMKNSC 306
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 594 CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLP 653
C+ IL T F GKQ VV G G+ G + + V+++ + +C
Sbjct: 207 CRESILDGLKRTTDVMFGGKQVVVCGYGEVGKGCCAALKALGAIVYITE----IDPICAL 262
Query: 654 NNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTN-----HYPFLHESC 700
+ V +L QVD+++ CTG N H + SC
Sbjct: 263 QACMDGFRVVKLNEV--------IRQVDVVITCTGNKNVVTREHLDRMKNSC 306
>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
pdb|3AB1|B Chain B, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase
Length = 360
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 605 RTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLSH 642
++ E F GK+ V+VG G S LD T+ + A++V L H
Sbjct: 156 KSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVH 193
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 21/124 (16%)
Query: 862 RTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVV-------GSGQSGLDITLDIATR 914
++ E F GK+ V+VG G S LD T+ + +V G G++ ++ A
Sbjct: 156 KSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANG 215
Query: 915 ASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQV--DIILCCTGY-SN 971
V+L V S+ N V LT +R DGS V D +L G+ SN
Sbjct: 216 TIDVYL---ETEVASIEESNGV--------LTRVHLRSSDGSKWTVEADRLLILIGFKSN 264
Query: 972 HYPF 975
P
Sbjct: 265 LGPL 268
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 524 RTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVS 558
++ E F GKR V+VG G S LD T + A +V+
Sbjct: 156 KSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVT 190
>pdb|3GVP|A Chain A, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|B Chain B, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|C Chain C, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
pdb|3GVP|D Chain D, Human Sahh-Like Domain Of Human Adenosylhomocysteinase 3
Length = 435
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 60/151 (39%), Gaps = 27/151 (17%)
Query: 839 HPIYPEFKGKDMCQIPILHSRDYRTPEPF----AGKQAVVVGSGQSGLDITLDIATTGKQ 894
H +Y K +C +P ++ D T + F +++++ GL T D+ GKQ
Sbjct: 169 HRLYQLSKAGKLC-VPAMNVNDSVTKQKFDNLYCCRESIL-----DGLKRTTDMMFGGKQ 222
Query: 895 AVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQD 954
VV G G+ G + S V+++ + +C + + +L
Sbjct: 223 VVVCGYGEVGKGCCAALKAMGSIVYVTE----IDPICALQACMDGFRLVKLNEV------ 272
Query: 955 GSYEQVDIILCCTGYSN-----HYPFLHESC 980
QVDI++ CTG N H + SC
Sbjct: 273 --IRQVDIVITCTGNKNVVTREHLDRMKNSC 301
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 594 CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLP 653
C+ IL T F GKQ VV G G+ G + S V+++ + +C
Sbjct: 202 CRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTE----IDPICAL 257
Query: 654 NNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTN-----HYPFLHESC 700
+ + +L QVDI++ CTG N H + SC
Sbjct: 258 QACMDGFRLVKLNEV--------IRQVDIVITCTGNKNVVTREHLDRMKNSC 301
>pdb|3QBU|A Chain A, Crystal Structure Of Putative Peptidoglyacn Deactelyase
(Hp0310) From Helicobacter Pylori
pdb|3QBU|B Chain B, Crystal Structure Of Putative Peptidoglyacn Deactelyase
(Hp0310) From Helicobacter Pylori
pdb|3QBU|C Chain C, Crystal Structure Of Putative Peptidoglyacn Deactelyase
(Hp0310) From Helicobacter Pylori
pdb|3QBU|D Chain D, Crystal Structure Of Putative Peptidoglyacn Deactelyase
(Hp0310) From Helicobacter Pylori
Length = 326
Score = 35.0 bits (79), Expect = 0.22, Method: Composition-based stats.
Identities = 32/127 (25%), Positives = 56/127 (44%), Gaps = 12/127 (9%)
Query: 1007 LGVPRHTLLFNLFDLQVRLFQQLMQGHI--TLPSKEEMLADTKQEVLAHLNEGQNPNTFH 1064
+G+PR LF + L F + GH T P + +M+ D EV AH +NP
Sbjct: 74 VGIPRLLKLFKKYHLPATWF---VPGHSIETFPEQMKMIVDAGHEVGAHGYSHENP--IA 128
Query: 1065 IIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFI---GFRNNKYQIFND-- 1119
+ + E+ L + +++D + P + + +T + + GF+ + + ND
Sbjct: 129 MSTKQEEDVLLKSVELIKDLTGKAPTGYVAPWWEFSNITNELLLKHGFKYDHSLMHNDFT 188
Query: 1120 QAYVRTG 1126
YVR G
Sbjct: 189 PYYVRVG 195
>pdb|3RHA|A Chain A, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
pdb|3RHA|B Chain B, The Crystal Structure Of Oxidoreductase From Arthrobacter
Aurescens
Length = 482
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWLYTEHIGCDQYGLPVHSSMYKSLKTN 806
GP GLTA + L +A G + E D +GG TW T D L + +T
Sbjct: 16 GPSGLTAARELKKA--GLSVAVLEARDRVGGRTWTDT----IDGAMLEIGGQWVSPDQTV 69
Query: 807 LPK--DLMELCGYGHKGNADKSYIGAKDVLENYNHPIYP 843
L + D + L Y + + YIGA Y +P
Sbjct: 70 LMELLDELGLKMYSRYRDGESVYIGADGKRTQYTGDTFP 108
>pdb|3FCS|A Chain A, Structure Of Complete Ectodomain Of Integrin Aiibb3
pdb|3FCS|C Chain C, Structure Of Complete Ectodomain Of Integrin Aiibb3
Length = 959
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 10/89 (11%)
Query: 608 EPFAGKQAVVVGSGQSGLDITLDIATRASTV------FLSHHS---ERVTSLCLPNNVVL 658
+P G++ +++GS Q+G + LD+ + S + FL + ++++ + L NV L
Sbjct: 514 KPRQGRRVLLLGSQQAGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSL 573
Query: 659 KPDVAELTPTGVRFQDGSY-EQVDIILCC 686
P A + P V D EQ I+L C
Sbjct: 574 PPTEAGMAPAVVLHGDTHVQEQTRIVLDC 602
>pdb|3UOV|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOV|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 1)
pdb|3UOX|A Chain A, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOX|B Chain B, Crystal Structure Of Otemo (Fad Bound Form 2)
pdb|3UOY|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOY|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
1)
pdb|3UOZ|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UOZ|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
2)
pdb|3UP4|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP4|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
3)
pdb|3UP5|A Chain A, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
pdb|3UP5|B Chain B, Crystal Structure Of Otemo Complex With Fad And Nadp (Form
4)
Length = 545
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 304 VKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 336
+++ I E+TP G++ D +Y+ +D+I+Y TG+
Sbjct: 358 IREAPIQEVTPEGIKTADAAYD-LDVIIYATGF 389
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 13/88 (14%)
Query: 505 PDFKGKDVCQIPIMHSHEYRTPEP-------FAGKRAVVVGSGPSGLDITHDISTEATTV 557
PD KG D + HS + T F GKR V+G+G +G+ I + A +
Sbjct: 152 PDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKEL 211
Query: 558 SAYLRFDN------KTITKRKKFDKGRN 579
+ R N + ++K D RN
Sbjct: 212 YVFQRTPNWCTPLGNSPMSKEKMDSLRN 239
>pdb|4AP3|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEY-RTPEPFAGKRAVVVGSGPSGLDITHDIS 551
++++ SN P F G D I+H+ + F GKR V+G+G SG+ I+
Sbjct: 152 VVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIA 211
Query: 552 TEATTVSAYLRFDNKTI 568
+A + + R N +I
Sbjct: 212 EQAEQLFVFQRSANYSI 228
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 586 PEFKGKDMCQIPILHSRDYRTPEP---FAGKQAVVVGSGQSGLDITLDIATRASTVFLSH 642
P F G D I+H+ R P F GK+ V+G+G SG+ IA +A +F+
Sbjct: 164 PAFDGLDRFTGDIVHT--ARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQ 221
Query: 643 HS 644
S
Sbjct: 222 RS 223
>pdb|4AP1|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEY-RTPEPFAGKRAVVVGSGPSGLDITHDIS 551
++++ SN P F G D I+H+ + F GKR V+G+G SG+ I+
Sbjct: 152 VVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIA 211
Query: 552 TEATTVSAYLRFDNKTI 568
+A + + R N +I
Sbjct: 212 EQAEQLFVFQRSANYSI 228
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 586 PEFKGKDMCQIPILHSRDYRTPEP---FAGKQAVVVGSGQSGLDITLDIATRASTVFLSH 642
P F G D I+H+ R P F GK+ V+G+G SG+ IA +A +F+
Sbjct: 164 PAFDGLDRFTGDIVHTA--RWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQ 221
Query: 643 HS 644
S
Sbjct: 222 RS 223
>pdb|4AOS|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
pdb|4AOX|A Chain A, Oxidized Steroid Monooxygenase Bound To Nadp
Length = 549
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEY-RTPEPFAGKRAVVVGSGPSGLDITHDIS 551
++++ SN P F G D I+H+ + F GKR V+G+G SG+ I+
Sbjct: 152 VVAAGPLSNANTPAFDGLDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIA 211
Query: 552 TEATTVSAYLRFDNKTI 568
+A + + R N +I
Sbjct: 212 EQAEQLFVFQRSANYSI 228
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 5/62 (8%)
Query: 586 PEFKGKDMCQIPILHSRDYRTPEP---FAGKQAVVVGSGQSGLDITLDIATRASTVFLSH 642
P F G D I+H+ R P F GK+ V+G+G SG+ IA +A +F+
Sbjct: 164 PAFDGLDRFTGDIVHT--ARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQ 221
Query: 643 HS 644
S
Sbjct: 222 RS 223
>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 15/100 (15%)
Query: 825 KSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDY------RTPEPFAGK 870
K + ++ +ENY+ P + GKD+ I ++ R + +T +P
Sbjct: 92 KDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEV-N 150
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLD 910
VV+GSG G++ A GK+ V+ L + LD
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLD 190
>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m
Length = 447
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 27/129 (20%)
Query: 825 KSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDY------RTPEPFAGK 870
K + ++ +ENY+ P + GKD+ I ++ R + +T +P
Sbjct: 92 KDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEV-N 150
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHH-SERVTS 929
VV+GSG G++ A GK+ V+ DI R V+L ++ +T
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVI-----------DILDRPLGVYLDKEFTDVLTE 199
Query: 930 LCLPNNVVL 938
NN+ +
Sbjct: 200 EMEANNITI 208
>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid
pdb|1NPX|A Chain A, Structure Of Nadh Peroxidase From Streptococcus Faecalis
10c1 Refined At 2.16 Angstroms Resolution
pdb|2NPX|A Chain A, Nadh Binding Site And Catalysis Of Nadh Peroxidase
Length = 447
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 27/129 (20%)
Query: 825 KSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDY------RTPEPFAGK 870
K + ++ +ENY+ P + GKD+ I ++ R + +T +P
Sbjct: 92 KDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEV-N 150
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHH-SERVTS 929
VV+GSG G++ A GK+ V+ DI R V+L ++ +T
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVI-----------DILDRPLGVYLDKEFTDVLTE 199
Query: 930 LCLPNNVVL 938
NN+ +
Sbjct: 200 EMEANNITI 208
>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox
Centre In Enterococcal Nadh Peroxidase To A Disulfide
Length = 447
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 27/129 (20%)
Query: 825 KSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDY------RTPEPFAGK 870
K + ++ +ENY+ P + GKD+ I ++ R + +T +P
Sbjct: 92 KDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVN- 150
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHH-SERVTS 929
VV+GSG G++ A GK+ V+ DI R V+L ++ +T
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVI-----------DILDRPLGVYLDKEFTDVLTE 199
Query: 930 LCLPNNVVL 938
NN+ +
Sbjct: 200 EMEANNITI 208
>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 27/129 (20%)
Query: 825 KSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDY------RTPEPFAGK 870
K + ++ +ENY+ P + GKD+ I ++ R + +T +P
Sbjct: 92 KDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEV-N 150
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHH-SERVTS 929
VV+GSG G++ A GK+ V+ DI R V+L ++ +T
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVI-----------DILDRPLGVYLDKEFTDVLTE 199
Query: 930 LCLPNNVVL 938
NN+ +
Sbjct: 200 EMEANNITI 208
>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And
Cys42ser Mutants: Active Site Structure, Mechanistic
Implications, And An Unusual Environment Of Arg303
Length = 447
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 27/129 (20%)
Query: 825 KSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDY------RTPEPFAGK 870
K + ++ +ENY+ P + GKD+ I ++ R + +T +P
Sbjct: 92 KDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEV-N 150
Query: 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHH-SERVTS 929
VV+GSG G++ A GK+ V+ DI R V+L ++ +T
Sbjct: 151 NVVVIGSGYIGIEAAEAFAKAGKKVTVI-----------DILDRPLGVYLDKEFTDVLTE 199
Query: 930 LCLPNNVVL 938
NN+ +
Sbjct: 200 EMEANNITI 208
>pdb|3AHC|A Chain A, Resting Form Of Phosphoketolase From Bifidobacterium Breve
pdb|3AHD|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
2-Acetyl- Thiamine Diphosphate
pdb|3AHE|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Dihydroxyethyl Thiamine Diphosphate
pdb|3AHF|A Chain A, Phosphoketolase From Bifidobacterium Breve Complexed With
Inorganic Phosphate
Length = 845
Score = 30.4 bits (67), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 1048 QEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMR----DESPLPPVLLK-VYFDSYGQL 1102
Q+V + + N + FH++G++ + + M+R D L LK + D Y
Sbjct: 734 QDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLIDADKYADK 793
Query: 1103 TEDFIGFRNNKYQIFNDQAY 1122
++ FR +Q D Y
Sbjct: 794 IDELNAFRKKAFQFAVDNGY 813
>pdb|3AHJ|A Chain A, H553a Mutant Of Phosphoketolase From Bifidobacterium Breve
Length = 845
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 1048 QEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMR----DESPLPPVLLK-VYFDSYGQL 1102
Q+V + + N + FH++G++ + + M+R D L LK + D Y
Sbjct: 734 QDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLIDADKYADK 793
Query: 1103 TEDFIGFRNNKYQIFNDQAY 1122
++ FR +Q D Y
Sbjct: 794 IDELNAFRKKAFQFAVDNGY 813
>pdb|3AHI|A Chain A, H320a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 1048 QEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMR----DESPLPPVLLK-VYFDSYGQL 1102
Q+V + + N + FH++G++ + + M+R D L LK + D Y
Sbjct: 734 QDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLIDADKYADK 793
Query: 1103 TEDFIGFRNNKYQIFNDQAY 1122
++ FR +Q D Y
Sbjct: 794 IDELNAFRKKAFQFAVDNGY 813
>pdb|3AHH|A Chain A, H142a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With Acetyl Thiamine Diphosphate
Length = 845
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 1048 QEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMR----DESPLPPVLLK-VYFDSYGQL 1102
Q+V + + N + FH++G++ + + M+R D L LK + D Y
Sbjct: 734 QDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLIDADKYADK 793
Query: 1103 TEDFIGFRNNKYQIFNDQAY 1122
++ FR +Q D Y
Sbjct: 794 IDELNAFRKKAFQFAVDNGY 813
>pdb|3AHG|A Chain A, H64a Mutant Of Phosphoketolase From Bifidobacterium Breve
Complexed With A Tricyclic Ring Form Of Thiamine
Diphosphate
Length = 845
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 5/80 (6%)
Query: 1048 QEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMR----DESPLPPVLLK-VYFDSYGQL 1102
Q+V + + N + FH++G++ + + M+R D L LK + D Y
Sbjct: 734 QDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLIDADKYADK 793
Query: 1103 TEDFIGFRNNKYQIFNDQAY 1122
++ FR +Q D Y
Sbjct: 794 IDELNAFRKKAFQFAVDNGY 813
>pdb|4A18|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 1
pdb|4A1B|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 3.
pdb|4A1D|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 4.
pdb|4A19|N Chain N, T.Thermophila 60s Ribosomal Subunit In Complex With
Initiation Factor 6. This File Contains 26s Rrna And
Proteins Of Molecule 2
Length = 144
Score = 30.0 bits (66), Expect = 7.5, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 529 FAGKRAVVVGSGPSGLDITHD--------ISTEATTVSAYLRFDNKTITKR---KKFDKG 577
FAGK+AV+V S G T D E + R +K I KR K F K
Sbjct: 18 FAGKKAVIVKSSEDG---TKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKY 74
Query: 578 RNYNHPIYPEFKGKDMCQIPILHSRD 603
N NH + + K++C L D
Sbjct: 75 VNLNHIMPTRYSVKELCDFKELVKED 100
>pdb|1VJ0|A Chain A, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|B Chain B, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|C Chain C, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
pdb|1VJ0|D Chain D, Crystal Structure Of Alcohol Dehydrogenase (Tm0436) From
Thermotoga Maritima At 2.00 A Resolution
Length = 380
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 9/56 (16%)
Query: 864 PEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG---------QSGLDITLD 910
PE FAGK V+ G+G GL + + G + V+V +G + G D+TL+
Sbjct: 191 PESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLN 246
>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf
Length = 521
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 16/62 (25%)
Query: 576 KGRNYNHPIYPEFKGKDM-----CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLD 630
K RN N P +++ K + C P+ F GK+ V+G G SG++ +D
Sbjct: 325 KWRNMNVPGEDQYRTKGVTYCPHCDGPL-----------FKGKRVAVIGGGNSGVEAAID 373
Query: 631 IA 632
+A
Sbjct: 374 LA 375
>pdb|1YKJ|A Chain A, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
pdb|1YKJ|B Chain B, A45g P-Hydroxybenzoate Hydroxylase With P-Hydroxybenzoate
Bound
Length = 394
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1D7L|A Chain A, Structure-function Correlations Of The Reaction Of Reduced
Nicotinamide Analogs With P-hydroxybenzoate Hydroxylase
Substituted With A Series Of 8-substituted Flavins
pdb|1DOC|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOD|A Chain A, The Mobil Flavin Of 4-oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1DOE|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
pdb|1IUS|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With 4-Aminobenzoate
At Ph 5.0
pdb|1IUT|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With 4-Aminobenzoate
At Ph 7.4
pdb|1IUU|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With 4-Aminobenzoate
At Ph 9.4
pdb|1IUV|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 5.0
pdb|1IUW|A Chain A, P-hydroxybenzoate Hydroxylase Complexed With
4-4-hydroxybenzoate At Ph 7.4
pdb|1IUX|A Chain A, P-Hydroxybenzoate Hydroxylase Complexed With
4-4-Hydroxybenzoate At Ph 9.4
Length = 394
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1K0I|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With 100mm Phb
pdb|1K0J|A Chain A, Pseudomonas Aeruginosa Phbh R220q In Complex With Nadph And
Free Of P- Ohb
pdb|1K0L|A Chain A, Pseudomonas Aeruginosa Phbh R220q Free Of P-ohb
Length = 394
Score = 29.6 bits (65), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1DOB|A Chain A, The Mobil Flavin Of 4-Oh Benzoate Hydroxylase: Motion Of A
Prosthetic Group Regulates Catalysis
Length = 394
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|3CGC|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGC|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGD|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(p)h Specificity
pdb|3CGE|A Chain A, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
pdb|3CGE|B Chain B, Pyridine Nucleotide Complexes With Bacillus Anthracis
Coenzyme A- Disulfide Reductase: A Structural Analysis
Of Dual Nad(P)h Specificity
Length = 480
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 839 HPIYPEFKGKDMCQIPILHS-----RDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGK 893
P+ PE++G+D+ + +L + R +T E + ++G G GL++ GK
Sbjct: 151 RPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGK 210
Query: 894 QAVVV 898
+ ++
Sbjct: 211 KVRMI 215
>pdb|1PXC|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-Hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1PXB|A Chain A, Crystal Structures Of Mutant Pseudomonas Aeruginosa
P-hydroxybenzoate Hydroxylase: The Tyr201phe, Tyr385phe,
And Asn300asp Variants
Length = 394
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPSEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1CJ2|A Chain A, Mutant Gln34arg Of Para-Hydroxybenzoate Hydroxylase
Length = 391
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1CJ4|A Chain A, Mutant Q34t Of Para-hydroxybenzoate Hydroxylase
Length = 392
Score = 29.6 bits (65), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1PBE|A Chain A, Crystal Structure Of The P-Hydroxybenzoate
Hydroxylase-Substrate Complex Refined At 1.9 Angstroms
Resolution. Analysis Of The Enzyme- Substrate And
Enzyme-Product Complexes
pdb|1PDH|A Chain A, Crystal Structure Of P-hydroxybenzoate Hydroxylase
Reconstituted With The Modified Fad Present In Alcohol
Oxidase From Methylotrophic Yeasts: Evidence For An
Arabinoflavin
pdb|1PHH|A Chain A, Crystal Structure Of P-Hydroxybenzoate Hydroxylase Complexed
With Its Reaction Product 3,4-Dihydroxybenzoate
pdb|2PHH|A Chain A, The Coenzyme Analogue Adenosine 5-Diphosphoribose Displaces
Fad In The Active Site Of P-Hydroxybenzoate Hydroxylase.
An X-Ray Crystallographic Investigation
Length = 394
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1BGJ|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys 116
Replaced By Ser (c116s) And His 162 Replaced By Arg
(h162r), In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1CC4|A Chain A, Phe161 And Arg166 Variants Of P-Hydroxybenzoate Hydroxylase.
Implications For Nadph Recognition And Structural
Stability
Length = 394
Score = 29.6 bits (65), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1PBF|A Chain A, Crystal Structures Of Wild-type P-hydroxybenzoate
Hydroxylase Complexed With 4-aminobenzoate,
2,4-dihydroxybenzoate And 2-hydroxy- 4-aminobenzoate And
Of The Try222ala Mutant, Complexed With 2-
Hydroxy-4-aminobenzoate. Evidence For A Proton Channel
And A New Binding Mode Of The Flavin Ring
Length = 394
Score = 29.6 bits (65), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide
Reductase Ahpf From E.Coli
Length = 310
Score = 29.6 bits (65), Expect = 9.9, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 576 KGRNYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIA 632
K RN N P +++ K + P + F GK+ V+G G SG++ +D+A
Sbjct: 114 KWRNMNVPGEDQYRTKGVTYCP------HCDGPLFKGKRVAVIGGGNSGVEAAIDLA 164
>pdb|1BKW|A Chain A, P-hydroxybenzoate Hydroxylase (phbh) Mutant With Cys116
Replaced By Ser (c116s) And Arg44 Replaced By Lys (r44k),
In Complex With Fad And 4-hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
>pdb|1BF3|A Chain A, P-Hydroxybenzoate Hydroxylase (Phbh) Mutant With Cys 116
Replaced By Ser (C116s) And Arg 42 Replaced By Lys
(R42k), In Complex With Fad And 4-Hydroxybenzoic Acid
Length = 394
Score = 29.6 bits (65), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
Query: 1020 DLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ---NPNTFHIIGHRSENFLNS 1076
+L+ RL ++ + +T PS E+ +A + V+ + G+ + HI+ LN
Sbjct: 242 ELKARLPAEVAEKLVTGPSLEKSIAPLRSFVVEPMQHGRLFLAGDAAHIVPPTGAKGLNL 301
Query: 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDF 1106
S D S L +LLK Y + G+L E +
Sbjct: 302 AAS---DVSTLYRLLLKAYREGRGELLERY 328
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,174,664
Number of Sequences: 62578
Number of extensions: 1695657
Number of successful extensions: 4014
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3773
Number of HSP's gapped (non-prelim): 275
length of query: 1129
length of database: 14,973,337
effective HSP length: 109
effective length of query: 1020
effective length of database: 8,152,335
effective search space: 8315381700
effective search space used: 8315381700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)