Query psy12350
Match_columns 1129
No_of_seqs 896 out of 7260
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 16:48:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12350.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12350hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00743 FMO-like: Flavin-bind 100.0 3.1E-56 6.7E-61 523.5 16.7 371 741-1126 3-484 (531)
2 PLN02172 flavin-containing mon 100.0 4.8E-50 1E-54 466.3 31.1 365 739-1125 10-446 (461)
3 PF00743 FMO-like: Flavin-bind 100.0 4.2E-51 9.1E-56 480.2 14.8 363 10-468 2-444 (531)
4 PLN02172 flavin-containing mon 100.0 1.1E-48 2.3E-53 454.9 25.2 346 6-432 7-370 (461)
5 KOG1399|consensus 100.0 5.8E-44 1.2E-48 404.7 22.6 337 8-430 5-349 (448)
6 KOG1399|consensus 100.0 8.4E-40 1.8E-44 370.8 20.6 349 739-1125 6-416 (448)
7 COG2072 TrkA Predicted flavopr 99.9 4.2E-26 9.1E-31 264.9 22.2 204 7-293 6-209 (443)
8 COG2072 TrkA Predicted flavopr 99.9 1.2E-25 2.5E-30 261.2 19.8 277 738-1032 7-412 (443)
9 COG1249 Lpd Pyruvate/2-oxoglut 99.9 1.2E-24 2.7E-29 248.7 16.0 306 8-398 3-334 (454)
10 COG1252 Ndh NADH dehydrogenase 99.9 2.5E-24 5.4E-29 239.1 11.7 293 9-403 3-334 (405)
11 PLN02507 glutathione reductase 99.9 3E-23 6.6E-28 246.2 14.5 305 9-398 25-362 (499)
12 KOG0405|consensus 99.9 2E-22 4.3E-27 208.3 18.2 302 8-396 19-347 (478)
13 TIGR01421 gluta_reduc_1 glutat 99.9 1.3E-22 2.7E-27 238.9 17.5 288 9-397 2-326 (450)
14 TIGR01423 trypano_reduc trypan 99.9 9.5E-23 2E-27 240.2 15.3 309 8-398 2-350 (486)
15 COG1249 Lpd Pyruvate/2-oxoglut 99.9 2.4E-22 5.2E-27 230.0 16.8 270 738-1032 3-334 (454)
16 PRK13512 coenzyme A disulfide 99.9 1.5E-22 3.3E-27 237.9 14.6 263 10-378 2-279 (438)
17 TIGR01424 gluta_reduc_2 glutat 99.9 7.5E-22 1.6E-26 232.9 17.0 290 9-398 2-325 (446)
18 TIGR01292 TRX_reduct thioredox 99.9 1.9E-21 4.2E-26 218.8 19.0 277 10-398 1-298 (300)
19 COG3486 IucD Lysine/ornithine 99.9 3.1E-23 6.8E-28 221.7 4.0 238 433-701 78-350 (436)
20 PRK05249 soluble pyridine nucl 99.9 5.3E-22 1.1E-26 236.3 14.8 299 8-398 4-334 (461)
21 PRK06116 glutathione reductase 99.9 4.2E-22 9.2E-27 235.9 13.8 290 9-398 4-327 (450)
22 PTZ00052 thioredoxin reductase 99.9 8.6E-22 1.9E-26 234.2 15.1 299 9-398 5-340 (499)
23 PRK06370 mercuric reductase; V 99.9 2.7E-21 5.8E-26 229.8 18.3 294 8-398 4-333 (463)
24 PF13738 Pyr_redox_3: Pyridine 99.9 4.4E-22 9.5E-27 209.9 9.4 192 13-293 1-201 (203)
25 PRK07818 dihydrolipoamide dehy 99.9 3.1E-21 6.7E-26 229.2 17.6 299 9-398 4-335 (466)
26 PRK06467 dihydrolipoamide dehy 99.9 1.3E-21 2.8E-26 231.8 14.3 295 8-398 3-336 (471)
27 PLN02546 glutathione reductase 99.9 1.2E-21 2.6E-26 233.0 12.9 287 9-398 79-412 (558)
28 PRK12831 putative oxidoreducta 99.9 4.3E-21 9.4E-26 225.7 16.8 286 8-403 139-463 (464)
29 PRK09564 coenzyme A disulfide 99.9 2.1E-21 4.5E-26 230.4 13.2 285 10-397 1-315 (444)
30 PRK14727 putative mercuric red 99.9 3.8E-21 8.3E-26 228.5 14.9 304 8-397 15-344 (479)
31 PRK04965 NADH:flavorubredoxin 99.8 3.7E-21 8E-26 222.6 13.9 273 10-398 3-301 (377)
32 PRK07846 mycothione reductase; 99.8 5.7E-21 1.2E-25 224.7 15.6 298 10-398 2-324 (451)
33 PRK10262 thioredoxin reductase 99.8 2.3E-20 5.1E-25 211.1 19.6 285 7-403 4-317 (321)
34 PRK06416 dihydrolipoamide dehy 99.8 1E-20 2.2E-25 225.1 17.3 295 8-398 3-333 (462)
35 PRK14694 putative mercuric red 99.8 1.2E-20 2.5E-25 224.2 17.2 301 1-397 1-333 (468)
36 TIGR02053 MerA mercuric reduct 99.8 6.5E-21 1.4E-25 226.7 15.0 288 10-398 1-328 (463)
37 PRK07251 pyridine nucleotide-d 99.8 7.6E-21 1.7E-25 224.4 15.5 262 9-379 3-294 (438)
38 PTZ00318 NADH dehydrogenase-li 99.8 6.4E-21 1.4E-25 223.2 14.7 299 7-403 8-350 (424)
39 PTZ00058 glutathione reductase 99.8 1.3E-20 2.7E-25 224.1 16.7 111 265-379 243-376 (561)
40 TIGR01438 TGR thioredoxin and 99.8 8.6E-21 1.9E-25 224.4 14.8 304 9-398 2-343 (484)
41 PRK13748 putative mercuric red 99.8 9.1E-21 2E-25 231.4 15.1 304 8-397 97-426 (561)
42 PRK06115 dihydrolipoamide dehy 99.8 8.2E-21 1.8E-25 224.9 14.2 129 265-398 180-337 (466)
43 PRK06292 dihydrolipoamide dehy 99.8 1E-20 2.2E-25 225.2 14.5 302 9-398 3-330 (460)
44 PLN02507 glutathione reductase 99.8 2.4E-20 5.2E-25 221.5 15.1 267 740-1033 26-363 (499)
45 PRK15317 alkyl hydroperoxide r 99.8 8.6E-20 1.9E-24 218.9 19.8 277 8-397 210-508 (517)
46 TIGR01421 gluta_reduc_1 glutat 99.8 3.7E-20 8E-25 218.1 15.5 270 740-1033 3-328 (450)
47 PRK09853 putative selenate red 99.8 2.6E-20 5.5E-25 228.3 14.2 269 8-399 538-840 (1019)
48 PRK06912 acoL dihydrolipoamide 99.8 2E-20 4.3E-25 221.6 12.9 304 10-397 1-328 (458)
49 TIGR02374 nitri_red_nirB nitri 99.8 3E-20 6.5E-25 231.8 14.8 288 12-417 1-328 (785)
50 TIGR03140 AhpF alkyl hydropero 99.8 1.1E-19 2.4E-24 217.5 19.0 278 8-398 211-510 (515)
51 PRK09754 phenylpropionate diox 99.8 1.7E-20 3.8E-25 218.1 11.5 258 9-379 3-278 (396)
52 PRK12779 putative bifunctional 99.8 4.6E-20 1E-24 231.1 15.9 282 8-399 305-625 (944)
53 PTZ00153 lipoamide dehydrogena 99.8 3E-20 6.5E-25 223.3 13.4 308 9-398 116-494 (659)
54 TIGR01316 gltA glutamate synth 99.8 5.7E-20 1.2E-24 216.2 15.0 277 8-398 132-447 (449)
55 PRK07845 flavoprotein disulfid 99.8 6E-20 1.3E-24 217.5 14.7 301 10-397 2-335 (466)
56 COG0492 TrxB Thioredoxin reduc 99.8 2.5E-19 5.3E-24 195.7 18.3 258 9-380 3-277 (305)
57 PRK14989 nitrite reductase sub 99.8 3.8E-20 8.2E-25 229.9 12.9 252 10-378 4-283 (847)
58 TIGR03452 mycothione_red mycot 99.8 8.9E-20 1.9E-24 215.0 15.0 299 9-398 2-327 (452)
59 PRK11749 dihydropyrimidine deh 99.8 7.1E-20 1.5E-24 216.8 14.1 278 8-403 139-454 (457)
60 TIGR03143 AhpF_homolog putativ 99.8 2.4E-19 5.2E-24 216.2 18.8 282 8-403 3-311 (555)
61 PRK08010 pyridine nucleotide-d 99.8 1.2E-19 2.6E-24 214.4 15.9 269 9-379 3-295 (441)
62 KOG0405|consensus 99.8 1.5E-19 3.2E-24 187.3 13.7 261 740-1032 21-349 (478)
63 TIGR01350 lipoamide_DH dihydro 99.8 1.6E-19 3.5E-24 215.2 15.8 291 10-398 2-331 (461)
64 PRK05249 soluble pyridine nucl 99.8 1.6E-19 3.5E-24 215.0 15.2 270 739-1033 5-335 (461)
65 TIGR01424 gluta_reduc_2 glutat 99.8 2.4E-19 5.3E-24 211.6 16.4 265 741-1033 4-326 (446)
66 PRK14727 putative mercuric red 99.8 1.2E-19 2.5E-24 215.9 13.7 273 739-1033 16-346 (479)
67 PRK06116 glutathione reductase 99.8 1.4E-19 3E-24 214.5 14.2 266 740-1033 5-328 (450)
68 PRK05976 dihydrolipoamide dehy 99.8 3.5E-19 7.6E-24 212.0 15.8 302 8-397 3-341 (472)
69 TIGR03315 Se_ygfK putative sel 99.8 2.3E-19 4.9E-24 221.5 13.9 269 9-399 537-838 (1012)
70 PRK12778 putative bifunctional 99.8 3.6E-19 7.8E-24 222.7 15.9 282 8-402 430-751 (752)
71 TIGR01423 trypano_reduc trypan 99.8 2.4E-19 5.2E-24 211.4 13.0 267 740-1033 4-351 (486)
72 PRK06327 dihydrolipoamide dehy 99.8 5.7E-19 1.2E-23 210.0 15.6 132 265-397 189-345 (475)
73 PRK06370 mercuric reductase; V 99.8 8.6E-19 1.9E-23 208.4 16.5 273 739-1033 5-334 (463)
74 PRK14694 putative mercuric red 99.8 3.9E-19 8.4E-24 211.2 13.1 267 740-1033 7-335 (468)
75 PRK12814 putative NADPH-depend 99.8 6.4E-19 1.4E-23 215.7 15.0 273 9-403 193-503 (652)
76 PRK08010 pyridine nucleotide-d 99.8 3.8E-19 8.3E-24 210.2 12.6 269 740-1033 4-317 (441)
77 TIGR03169 Nterm_to_SelD pyridi 99.8 3.5E-19 7.6E-24 205.6 12.0 284 11-403 1-313 (364)
78 TIGR01292 TRX_reduct thioredox 99.8 1.1E-18 2.4E-23 196.4 15.6 267 741-1031 2-297 (300)
79 KOG1335|consensus 99.8 2.2E-18 4.8E-23 181.0 16.0 292 8-382 38-358 (506)
80 PLN02546 glutathione reductase 99.8 2.5E-19 5.4E-24 213.3 9.9 267 740-1033 80-413 (558)
81 TIGR01438 TGR thioredoxin and 99.8 1.3E-18 2.9E-23 205.9 15.5 265 741-1032 4-343 (484)
82 PRK07251 pyridine nucleotide-d 99.8 1.4E-18 2.9E-23 205.3 15.4 270 740-1033 4-316 (438)
83 PTZ00052 thioredoxin reductase 99.8 1.4E-18 3.1E-23 206.6 15.3 271 740-1033 6-341 (499)
84 TIGR02053 MerA mercuric reduct 99.8 1.8E-18 3.9E-23 205.8 16.1 267 741-1033 2-329 (463)
85 KOG1336|consensus 99.8 9.3E-19 2E-23 191.9 12.4 280 9-403 74-374 (478)
86 KOG0404|consensus 99.8 2.6E-18 5.6E-23 167.2 13.9 264 8-378 7-293 (322)
87 PRK07846 mycothione reductase; 99.8 1.5E-18 3.2E-23 204.3 14.7 182 835-1033 135-325 (451)
88 PTZ00153 lipoamide dehydrogena 99.8 1.9E-18 4.1E-23 207.9 15.5 185 834-1033 280-495 (659)
89 PRK10262 thioredoxin reductase 99.8 3.9E-18 8.5E-23 193.0 17.1 272 739-1032 6-316 (321)
90 PRK06416 dihydrolipoamide dehy 99.8 1.9E-18 4.2E-23 205.6 14.3 267 740-1034 5-335 (462)
91 PRK13748 putative mercuric red 99.8 3.1E-18 6.6E-23 209.2 16.0 271 740-1033 99-428 (561)
92 PRK12775 putative trifunctiona 99.8 2E-18 4.2E-23 218.8 14.6 285 9-403 430-757 (1006)
93 PRK06115 dihydrolipoamide dehy 99.8 3.8E-18 8.3E-23 202.2 15.8 268 740-1034 4-339 (466)
94 KOG4716|consensus 99.8 5.9E-18 1.3E-22 174.5 14.4 307 8-398 18-364 (503)
95 COG1252 Ndh NADH dehydrogenase 99.8 1E-18 2.2E-23 194.6 9.4 277 740-1033 4-330 (405)
96 PRK06292 dihydrolipoamide dehy 99.8 3.6E-18 7.9E-23 203.4 14.8 272 739-1033 3-331 (460)
97 PRK06467 dihydrolipoamide dehy 99.8 3.5E-18 7.6E-23 202.6 14.1 271 740-1033 5-337 (471)
98 PRK12770 putative glutamate sy 99.8 6.5E-18 1.4E-22 193.3 15.8 295 8-401 17-350 (352)
99 PRK12810 gltD glutamate syntha 99.8 5E-18 1.1E-22 201.2 15.3 280 9-403 143-467 (471)
100 PRK13512 coenzyme A disulfide 99.8 2E-18 4.4E-23 203.0 11.3 264 741-1033 3-312 (438)
101 PTZ00058 glutathione reductase 99.8 4.9E-18 1.1E-22 202.0 14.4 180 834-1033 208-432 (561)
102 PRK07845 flavoprotein disulfid 99.7 1.1E-17 2.4E-22 198.2 15.3 267 741-1033 3-337 (466)
103 PRK07818 dihydrolipoamide dehy 99.7 7.5E-18 1.6E-22 200.3 13.2 267 740-1033 5-336 (466)
104 PRK12831 putative oxidoreducta 99.7 1.3E-17 2.7E-22 196.5 14.3 263 739-1031 140-457 (464)
105 TIGR01350 lipoamide_DH dihydro 99.7 6.6E-18 1.4E-22 201.4 11.9 267 741-1034 3-333 (461)
106 PRK09564 coenzyme A disulfide 99.7 5.2E-18 1.1E-22 201.3 10.0 275 741-1034 2-318 (444)
107 PRK06912 acoL dihydrolipoamide 99.7 2.7E-17 5.8E-22 194.9 15.5 270 741-1033 2-330 (458)
108 TIGR03452 mycothione_red mycot 99.7 9.1E-18 2E-22 197.9 11.3 181 836-1033 139-328 (452)
109 PRK15317 alkyl hydroperoxide r 99.7 2.4E-17 5.2E-22 197.8 15.2 258 740-1027 212-504 (517)
110 PRK12769 putative oxidoreducta 99.7 2.7E-17 5.9E-22 202.6 15.4 283 8-401 326-652 (654)
111 PF13434 K_oxygenase: L-lysine 99.7 1.2E-20 2.5E-25 211.5 -13.1 148 434-588 76-244 (341)
112 COG0492 TrxB Thioredoxin reduc 99.7 4.8E-17 1E-21 177.8 15.5 250 738-1013 2-277 (305)
113 PRK04965 NADH:flavorubredoxin 99.7 7.7E-18 1.7E-22 194.9 9.8 268 740-1034 3-303 (377)
114 TIGR01318 gltD_gamma_fam gluta 99.7 5.4E-17 1.2E-21 191.5 16.5 280 8-399 140-464 (467)
115 PRK09754 phenylpropionate diox 99.7 1.1E-17 2.5E-22 194.5 10.3 274 739-1034 3-310 (396)
116 PRK14989 nitrite reductase sub 99.7 1.4E-17 3E-22 207.1 11.0 270 741-1034 5-311 (847)
117 KOG2495|consensus 99.7 2E-17 4.3E-22 177.4 10.4 298 8-399 54-395 (491)
118 TIGR01317 GOGAT_sm_gam glutama 99.7 4.8E-17 1E-21 192.7 14.8 282 9-402 143-480 (485)
119 TIGR01316 gltA glutamate synth 99.7 5.4E-17 1.2E-21 191.0 14.9 266 739-1031 133-446 (449)
120 KOG1335|consensus 99.7 2.1E-17 4.6E-22 173.7 9.9 270 739-1033 39-377 (506)
121 PRK06327 dihydrolipoamide dehy 99.7 5.5E-17 1.2E-21 193.0 14.0 274 740-1034 5-348 (475)
122 PRK05976 dihydrolipoamide dehy 99.7 3.8E-17 8.1E-22 194.7 12.1 267 740-1034 5-344 (472)
123 TIGR02374 nitri_red_nirB nitri 99.7 2.2E-17 4.8E-22 206.1 10.6 275 742-1034 1-302 (785)
124 PRK12779 putative bifunctional 99.7 1.1E-16 2.4E-21 200.9 16.3 268 739-1037 306-629 (944)
125 PLN02852 ferredoxin-NADP+ redu 99.7 1.7E-16 3.6E-21 184.3 16.2 45 8-52 25-69 (491)
126 PRK11749 dihydropyrimidine deh 99.7 1.7E-16 3.7E-21 188.0 16.4 261 740-1031 141-448 (457)
127 TIGR03143 AhpF_homolog putativ 99.7 2.2E-16 4.7E-21 190.6 16.9 265 740-1030 5-304 (555)
128 COG1251 NirB NAD(P)H-nitrite r 99.7 3.3E-17 7.2E-22 187.7 9.3 288 9-416 3-332 (793)
129 PTZ00318 NADH dehydrogenase-li 99.7 5.6E-17 1.2E-21 190.0 11.0 186 830-1032 115-345 (424)
130 PRK09853 putative selenate red 99.7 1.6E-16 3.5E-21 195.3 14.6 266 739-1034 539-841 (1019)
131 TIGR03140 AhpF alkyl hydropero 99.7 1.2E-16 2.6E-21 191.4 13.2 268 739-1030 212-508 (515)
132 PRK12809 putative oxidoreducta 99.7 3E-16 6.4E-21 192.4 15.6 284 8-402 309-636 (639)
133 PRK12771 putative glutamate sy 99.7 2.9E-16 6.4E-21 190.5 14.1 273 8-403 136-446 (564)
134 TIGR01372 soxA sarcosine oxida 99.7 2.1E-16 4.6E-21 202.1 12.0 277 9-396 163-467 (985)
135 PRK13984 putative oxidoreducta 99.7 3.8E-16 8.3E-21 191.6 13.7 275 8-400 282-601 (604)
136 TIGR03315 Se_ygfK putative sel 99.6 9.2E-16 2E-20 189.9 15.6 264 740-1034 538-839 (1012)
137 TIGR03385 CoA_CoA_reduc CoA-di 99.6 4.1E-16 8.9E-21 183.9 10.7 252 23-379 1-272 (427)
138 PRK12778 putative bifunctional 99.6 8.5E-16 1.8E-20 192.5 13.9 260 740-1031 432-746 (752)
139 PRK12814 putative NADPH-depend 99.6 2.4E-15 5.2E-20 184.4 15.9 258 740-1030 194-496 (652)
140 PRK12810 gltD glutamate syntha 99.6 3.3E-15 7.2E-20 177.2 16.4 270 740-1030 144-460 (471)
141 PRK12770 putative glutamate sy 99.6 1.5E-15 3.2E-20 173.9 12.6 267 740-1031 19-346 (352)
142 PRK12775 putative trifunctiona 99.6 4.8E-15 1E-19 188.1 17.0 271 739-1040 430-764 (1006)
143 PF13738 Pyr_redox_3: Pyridine 99.6 1.4E-15 3.1E-20 160.2 8.1 147 743-902 1-200 (203)
144 TIGR03169 Nterm_to_SelD pyridi 99.6 8.8E-16 1.9E-20 177.3 6.7 264 742-1031 2-307 (364)
145 KOG4716|consensus 99.6 4.3E-15 9.3E-20 153.6 9.0 180 836-1031 169-363 (503)
146 PF13434 K_oxygenase: L-lysine 99.6 1E-15 2.2E-20 171.7 4.5 216 9-295 2-228 (341)
147 TIGR03385 CoA_CoA_reduc CoA-di 99.6 5.3E-15 1.1E-19 174.5 9.7 188 830-1033 93-304 (427)
148 KOG1336|consensus 99.6 4.4E-14 9.6E-19 155.5 14.9 244 739-1012 74-351 (478)
149 PRK12769 putative oxidoreducta 99.5 9.7E-14 2.1E-18 171.3 19.4 261 740-1031 328-648 (654)
150 TIGR01318 gltD_gamma_fam gluta 99.5 8.3E-14 1.8E-18 164.6 16.1 260 740-1031 142-462 (467)
151 TIGR01317 GOGAT_sm_gam glutama 99.5 3.3E-13 7.2E-18 160.1 19.0 275 740-1030 144-474 (485)
152 COG3634 AhpF Alkyl hydroperoxi 99.5 1.5E-13 3.2E-18 142.9 13.2 264 8-381 210-492 (520)
153 PRK13984 putative oxidoreducta 99.5 1.6E-13 3.5E-18 168.5 15.2 258 740-1031 284-598 (604)
154 PRK12809 putative oxidoreducta 99.5 2E-13 4.2E-18 167.7 14.7 261 739-1031 310-631 (639)
155 KOG0399|consensus 99.5 6.1E-13 1.3E-17 155.5 16.5 285 9-406 1785-2125(2142)
156 TIGR01372 soxA sarcosine oxida 99.5 1.5E-13 3.3E-18 176.1 12.5 260 739-1030 163-467 (985)
157 KOG2495|consensus 99.5 5E-14 1.1E-18 151.6 6.1 271 740-1031 56-393 (491)
158 PRK12771 putative glutamate sy 99.4 6E-13 1.3E-17 161.7 15.0 258 740-1030 138-439 (564)
159 KOG0404|consensus 99.4 1.7E-13 3.7E-18 133.9 7.6 251 740-1012 9-294 (322)
160 COG3634 AhpF Alkyl hydroperoxi 99.4 4.4E-13 9.6E-18 139.4 10.5 245 740-1012 212-490 (520)
161 KOG1800|consensus 99.4 3.3E-12 7.2E-17 135.3 14.8 45 8-52 19-63 (468)
162 PRK06567 putative bifunctional 99.4 2.9E-12 6.4E-17 155.5 13.9 40 8-49 382-421 (1028)
163 COG0493 GltD NADPH-dependent g 99.4 2.3E-12 5E-17 148.3 11.6 106 9-182 123-229 (457)
164 COG3486 IucD Lysine/ornithine 99.3 1.6E-11 3.4E-16 132.7 16.3 145 7-179 3-162 (436)
165 PLN02852 ferredoxin-NADP+ redu 99.3 7.8E-12 1.7E-16 145.6 13.7 141 739-891 26-188 (491)
166 COG1251 NirB NAD(P)H-nitrite r 99.3 2.9E-12 6.2E-17 147.7 6.4 259 742-1033 6-306 (793)
167 COG0446 HcaD Uncharacterized N 99.3 1.5E-11 3.2E-16 145.4 12.1 117 265-381 142-280 (415)
168 PTZ00188 adrenodoxin reductase 99.3 2.8E-11 6E-16 137.9 13.4 44 8-52 38-81 (506)
169 KOG0399|consensus 99.2 2.4E-10 5.2E-15 134.3 14.8 290 739-1044 1785-2133(2142)
170 COG0493 GltD NADPH-dependent g 99.0 8E-10 1.7E-14 127.5 10.1 274 740-1030 124-446 (457)
171 COG2081 Predicted flavoprotein 99.0 1.1E-09 2.4E-14 119.2 9.3 139 9-176 3-171 (408)
172 PRK06567 putative bifunctional 98.9 2E-09 4.4E-14 131.2 10.4 143 740-889 384-570 (1028)
173 KOG1346|consensus 98.9 2.3E-09 5E-14 114.5 8.7 137 265-406 353-513 (659)
174 PF03486 HI0933_like: HI0933-l 98.9 1.9E-09 4.1E-14 123.6 7.5 151 10-176 1-170 (409)
175 PRK09897 hypothetical protein; 98.9 1E-08 2.2E-13 121.3 12.6 147 10-171 2-165 (534)
176 COG0446 HcaD Uncharacterized N 98.8 8.3E-09 1.8E-13 122.0 9.3 269 742-1033 1-310 (415)
177 PF07992 Pyr_redox_2: Pyridine 98.8 3.3E-09 7.1E-14 111.5 5.0 126 11-182 1-130 (201)
178 COG4529 Uncharacterized protei 98.7 1.1E-07 2.3E-12 106.7 12.3 138 10-172 2-164 (474)
179 TIGR00292 thiazole biosynthesi 98.7 1.2E-07 2.6E-12 102.1 11.6 105 9-131 21-128 (254)
180 KOG1800|consensus 98.7 2.4E-07 5.1E-12 99.1 13.3 138 741-890 22-180 (468)
181 PRK04176 ribulose-1,5-biphosph 98.7 9.4E-08 2E-12 103.3 10.3 105 9-131 25-132 (257)
182 PF13454 NAD_binding_9: FAD-NA 98.6 2E-07 4.3E-12 93.0 11.2 129 13-170 1-155 (156)
183 COG1635 THI4 Ribulose 1,5-bisp 98.5 2.8E-07 6.1E-12 91.5 8.7 40 10-51 31-71 (262)
184 COG3380 Predicted NAD/FAD-depe 98.5 3.7E-07 8.1E-12 93.4 8.3 131 10-169 2-157 (331)
185 PRK06847 hypothetical protein; 98.4 1.3E-06 2.9E-11 101.5 12.9 144 8-172 3-163 (375)
186 KOG2755|consensus 98.4 8.6E-07 1.9E-11 90.1 9.2 34 11-44 1-34 (334)
187 TIGR02032 GG-red-SF geranylger 98.4 9.4E-07 2E-11 99.0 10.7 143 10-172 1-148 (295)
188 PF13450 NAD_binding_8: NAD(P) 98.4 2.6E-07 5.7E-12 77.0 3.6 37 14-52 1-37 (68)
189 TIGR02028 ChlP geranylgeranyl 98.4 2.4E-06 5.2E-11 99.5 12.2 152 10-172 1-160 (398)
190 TIGR00275 flavoprotein, HI0933 98.3 1.6E-06 3.6E-11 100.8 10.0 145 13-175 1-163 (400)
191 PRK07364 2-octaprenyl-6-methox 98.3 2.9E-06 6.2E-11 100.2 11.9 37 8-46 17-53 (415)
192 PRK10157 putative oxidoreducta 98.3 4.7E-06 1E-10 98.0 12.8 146 8-170 4-162 (428)
193 KOG1346|consensus 98.3 9.2E-07 2E-11 95.1 5.7 130 869-1011 347-487 (659)
194 COG0644 FixC Dehydrogenases (f 98.3 3.7E-06 8.1E-11 98.0 10.8 141 9-169 3-149 (396)
195 PRK11445 putative oxidoreducta 98.3 3.6E-06 7.9E-11 96.5 10.5 145 10-172 2-157 (351)
196 TIGR02023 BchP-ChlP geranylger 98.2 6.4E-06 1.4E-10 96.0 12.1 146 10-172 1-155 (388)
197 PRK06184 hypothetical protein; 98.2 6.6E-06 1.4E-10 99.3 12.5 146 9-172 3-168 (502)
198 PTZ00188 adrenodoxin reductase 98.2 3.4E-06 7.4E-11 96.9 8.7 57 724-783 25-82 (506)
199 PRK10015 oxidoreductase; Provi 98.2 1.1E-05 2.3E-10 94.9 13.1 37 9-47 5-41 (429)
200 PRK06183 mhpA 3-(3-hydroxyphen 98.2 1E-05 2.3E-10 98.3 13.3 149 8-172 9-174 (538)
201 PRK06185 hypothetical protein; 98.2 5.6E-06 1.2E-10 97.4 10.5 150 8-172 5-169 (407)
202 PRK07333 2-octaprenyl-6-methox 98.2 8.4E-06 1.8E-10 95.8 11.8 146 10-171 2-166 (403)
203 PRK05329 anaerobic glycerol-3- 98.2 1.6E-05 3.4E-10 91.9 13.3 75 265-339 221-319 (422)
204 PRK06753 hypothetical protein; 98.2 7.5E-06 1.6E-10 95.1 10.7 143 10-172 1-152 (373)
205 PRK06126 hypothetical protein; 98.2 1.5E-05 3.3E-10 97.3 13.9 35 9-45 7-41 (545)
206 PF01494 FAD_binding_3: FAD bi 98.1 2.4E-06 5.3E-11 98.5 6.0 149 10-172 2-172 (356)
207 PRK07208 hypothetical protein; 98.1 4.4E-06 9.5E-11 100.5 7.9 42 8-51 3-44 (479)
208 PRK08773 2-octaprenyl-3-methyl 98.1 1.7E-05 3.7E-10 92.7 12.6 148 8-172 5-169 (392)
209 PF00070 Pyr_redox: Pyridine n 98.1 2.8E-06 6E-11 74.0 4.1 73 871-955 1-80 (80)
210 TIGR01790 carotene-cycl lycope 98.1 1.5E-05 3.4E-10 93.0 11.7 139 11-172 1-141 (388)
211 PLN02661 Putative thiazole syn 98.1 1.2E-05 2.6E-10 88.9 9.9 42 9-51 92-134 (357)
212 PRK08132 FAD-dependent oxidore 98.1 2.1E-05 4.6E-10 96.0 13.3 152 8-172 22-185 (547)
213 PRK08244 hypothetical protein; 98.1 1.5E-05 3.1E-10 96.2 11.6 148 10-172 3-159 (493)
214 PRK06834 hypothetical protein; 98.1 2.2E-05 4.8E-10 93.7 12.9 145 9-172 3-156 (488)
215 KOG0029|consensus 98.1 2.8E-06 6.1E-11 99.8 4.8 44 7-52 13-56 (501)
216 PRK07045 putative monooxygenas 98.1 1.8E-05 3.9E-10 92.4 11.5 150 8-172 4-165 (388)
217 PRK08163 salicylate hydroxylas 98.1 1.2E-05 2.6E-10 94.3 9.8 37 9-47 4-40 (396)
218 PF00070 Pyr_redox: Pyridine n 98.1 2.4E-05 5.1E-10 68.1 9.1 68 11-131 1-68 (80)
219 PLN00093 geranylgeranyl diphos 98.0 2.4E-05 5.3E-10 92.0 11.9 149 8-172 38-199 (450)
220 PRK07494 2-octaprenyl-6-methox 98.0 2.3E-05 5E-10 91.6 11.5 37 8-46 6-42 (388)
221 PF01946 Thi4: Thi4 family; PD 98.0 3E-06 6.4E-11 85.3 3.2 41 9-51 17-58 (230)
222 TIGR01988 Ubi-OHases Ubiquinon 98.0 2.2E-05 4.7E-10 91.7 10.8 145 11-172 1-163 (385)
223 COG1232 HemY Protoporphyrinoge 98.0 7.9E-06 1.7E-10 93.6 6.6 43 10-52 1-43 (444)
224 PRK06475 salicylate hydroxylas 98.0 2.9E-05 6.2E-10 91.0 11.3 35 10-46 3-37 (400)
225 PRK08013 oxidoreductase; Provi 98.0 3.5E-05 7.6E-10 90.2 12.0 35 9-45 3-37 (400)
226 PF12831 FAD_oxidored: FAD dep 98.0 1.5E-06 3.2E-11 102.2 0.3 142 11-169 1-147 (428)
227 PRK09126 hypothetical protein; 98.0 4.3E-05 9.2E-10 89.5 12.4 34 10-45 4-37 (392)
228 COG1148 HdrA Heterodisulfide r 98.0 2.1E-05 4.6E-10 87.1 8.3 40 739-780 124-163 (622)
229 PRK08243 4-hydroxybenzoate 3-m 97.9 4.2E-05 9.2E-10 89.3 11.5 35 9-45 2-36 (392)
230 PRK07588 hypothetical protein; 97.9 3.7E-05 8.1E-10 89.8 10.9 35 10-46 1-35 (391)
231 PLN02463 lycopene beta cyclase 97.9 3.6E-05 7.8E-10 90.1 10.6 134 9-171 28-168 (447)
232 PRK07538 hypothetical protein; 97.9 5.1E-05 1.1E-09 89.3 11.9 148 10-172 1-165 (413)
233 COG3349 Uncharacterized conser 97.9 6.8E-06 1.5E-10 93.6 4.1 44 10-55 1-44 (485)
234 PLN02697 lycopene epsilon cycl 97.9 5.2E-05 1.1E-09 90.2 11.3 136 9-172 108-248 (529)
235 TIGR03219 salicylate_mono sali 97.9 3.8E-05 8.3E-10 90.4 10.0 36 10-47 1-37 (414)
236 PRK07608 ubiquinone biosynthes 97.9 6.5E-05 1.4E-09 87.8 11.9 36 9-46 5-40 (388)
237 PRK07236 hypothetical protein; 97.9 0.00012 2.5E-09 85.5 14.0 36 8-45 5-40 (386)
238 PRK08274 tricarballylate dehyd 97.9 7.5E-05 1.6E-09 89.4 12.3 40 8-49 3-44 (466)
239 PRK08020 ubiF 2-octaprenyl-3-m 97.9 7.9E-05 1.7E-09 87.2 12.0 35 8-44 4-38 (391)
240 PRK11883 protoporphyrinogen ox 97.9 1.3E-05 2.9E-10 95.8 5.5 42 10-51 1-42 (451)
241 TIGR01813 flavo_cyto_c flavocy 97.9 0.00011 2.3E-09 87.4 13.1 38 11-50 1-39 (439)
242 PRK07190 hypothetical protein; 97.9 8.2E-05 1.8E-09 88.8 12.1 36 9-46 5-40 (487)
243 PRK08849 2-octaprenyl-3-methyl 97.9 8.9E-05 1.9E-09 86.3 12.2 33 10-44 4-36 (384)
244 COG0654 UbiH 2-polyprenyl-6-me 97.9 9.5E-05 2.1E-09 86.0 12.2 148 9-172 2-162 (387)
245 PRK05714 2-octaprenyl-3-methyl 97.8 5E-05 1.1E-09 89.3 9.9 33 10-44 3-35 (405)
246 PRK08255 salicylyl-CoA 5-hydro 97.8 2.4E-05 5.2E-10 98.6 7.6 134 10-173 1-142 (765)
247 PRK06481 fumarate reductase fl 97.8 0.0002 4.2E-09 86.2 14.9 39 9-49 61-99 (506)
248 PRK05732 2-octaprenyl-6-methox 97.8 7.6E-05 1.6E-09 87.5 10.9 35 9-43 3-38 (395)
249 TIGR01984 UbiH 2-polyprenyl-6- 97.8 4.4E-05 9.6E-10 89.0 8.8 143 11-172 1-162 (382)
250 COG1233 Phytoene dehydrogenase 97.8 1.8E-05 4E-10 94.4 5.3 42 9-52 3-44 (487)
251 PF05834 Lycopene_cycl: Lycope 97.8 9.1E-05 2E-09 85.5 10.8 136 11-170 1-140 (374)
252 KOG2755|consensus 97.8 7E-05 1.5E-09 76.5 8.1 34 743-776 3-36 (334)
253 PRK08850 2-octaprenyl-6-methox 97.8 0.00013 2.7E-09 85.8 11.6 33 9-43 4-36 (405)
254 TIGR00562 proto_IX_ox protopor 97.8 3.4E-05 7.3E-10 92.5 6.8 43 10-52 3-47 (462)
255 PRK12416 protoporphyrinogen ox 97.8 2.7E-05 5.9E-10 93.2 6.0 42 10-51 2-47 (463)
256 PF13450 NAD_binding_8: NAD(P) 97.8 1.3E-05 2.8E-10 66.9 2.1 41 744-786 1-41 (68)
257 PRK06996 hypothetical protein; 97.8 0.00017 3.6E-09 84.5 12.2 149 8-170 10-172 (398)
258 PRK08294 phenol 2-monooxygenas 97.7 0.00024 5.2E-09 87.4 13.9 159 7-172 30-210 (634)
259 PF00890 FAD_binding_2: FAD bi 97.7 7.6E-05 1.7E-09 88.1 9.3 39 11-51 1-39 (417)
260 COG1148 HdrA Heterodisulfide r 97.7 5E-05 1.1E-09 84.2 6.5 41 9-51 124-164 (622)
261 TIGR01789 lycopene_cycl lycope 97.7 0.00017 3.6E-09 83.0 11.0 42 11-52 1-44 (370)
262 PRK07233 hypothetical protein; 97.7 4.4E-05 9.5E-10 90.8 6.4 39 11-51 1-39 (434)
263 COG2081 Predicted flavoprotein 97.7 6.8E-05 1.5E-09 82.5 6.9 39 738-778 2-40 (408)
264 COG2907 Predicted NAD/FAD-bind 97.7 3.4E-05 7.3E-10 82.1 4.4 42 7-51 6-47 (447)
265 PRK12266 glpD glycerol-3-phosp 97.7 0.00022 4.7E-09 85.8 11.5 41 7-49 4-44 (508)
266 COG0562 Glf UDP-galactopyranos 97.7 8.4E-05 1.8E-09 78.6 6.9 41 10-52 2-42 (374)
267 TIGR02360 pbenz_hydroxyl 4-hyd 97.7 0.00017 3.6E-09 84.1 10.2 34 10-45 3-36 (390)
268 PRK05192 tRNA uridine 5-carbox 97.7 0.00029 6.3E-09 83.8 12.1 38 9-48 4-42 (618)
269 PLN02568 polyamine oxidase 97.6 5.1E-05 1.1E-09 91.1 5.8 45 9-53 5-52 (539)
270 PRK07121 hypothetical protein; 97.6 0.00022 4.8E-09 85.7 10.9 41 9-51 20-60 (492)
271 PRK05945 sdhA succinate dehydr 97.6 0.00016 3.5E-09 88.3 9.8 39 10-48 4-42 (575)
272 KOG0685|consensus 97.6 6.5E-05 1.4E-09 83.9 5.5 44 8-52 20-63 (498)
273 PRK12409 D-amino acid dehydrog 97.6 0.00039 8.5E-09 81.8 12.6 35 10-46 2-36 (410)
274 PF07992 Pyr_redox_2: Pyridine 97.6 6.9E-06 1.5E-10 86.2 -2.2 32 871-902 1-32 (201)
275 PRK06617 2-octaprenyl-6-methox 97.6 0.00027 5.9E-09 81.9 10.9 144 10-172 2-160 (374)
276 PLN02268 probable polyamine ox 97.6 5.6E-05 1.2E-09 89.7 5.2 40 10-51 1-40 (435)
277 TIGR00551 nadB L-aspartate oxi 97.6 0.00064 1.4E-08 81.6 14.0 37 10-49 3-39 (488)
278 PF01134 GIDA: Glucose inhibit 97.6 0.00033 7.2E-09 78.9 10.7 37 11-49 1-38 (392)
279 PRK13977 myosin-cross-reactive 97.6 7.4E-05 1.6E-09 87.9 5.8 44 8-51 21-66 (576)
280 TIGR00031 UDP-GALP_mutase UDP- 97.6 6.8E-05 1.5E-09 85.2 5.2 40 10-51 2-41 (377)
281 KOG2415|consensus 97.6 0.00018 3.8E-09 78.2 7.8 45 8-52 75-123 (621)
282 COG0579 Predicted dehydrogenas 97.6 0.00052 1.1E-08 78.3 12.0 39 9-47 3-41 (429)
283 PLN02576 protoporphyrinogen ox 97.6 7.4E-05 1.6E-09 90.4 5.4 44 8-52 11-54 (496)
284 PRK08275 putative oxidoreducta 97.5 0.00022 4.7E-09 86.9 9.4 38 9-46 9-46 (554)
285 PRK06175 L-aspartate oxidase; 97.5 0.0007 1.5E-08 79.7 13.1 38 9-49 4-41 (433)
286 PRK05329 anaerobic glycerol-3- 97.5 0.00038 8.2E-09 80.6 10.5 33 740-774 3-35 (422)
287 TIGR01989 COQ6 Ubiquinone bios 97.5 0.00044 9.4E-09 81.9 11.3 35 10-44 1-37 (437)
288 KOG3851|consensus 97.5 0.00034 7.3E-09 73.6 8.5 38 8-45 38-75 (446)
289 PRK07803 sdhA succinate dehydr 97.5 0.00042 9.2E-09 85.3 11.0 37 9-47 8-44 (626)
290 PRK08641 sdhA succinate dehydr 97.5 0.0015 3.2E-08 80.0 15.5 37 9-47 3-39 (589)
291 PRK05868 hypothetical protein; 97.5 0.00054 1.2E-08 79.2 11.1 35 10-46 2-36 (372)
292 TIGR01812 sdhA_frdA_Gneg succi 97.5 0.00051 1.1E-08 84.2 11.1 35 11-47 1-35 (566)
293 TIGR00136 gidA glucose-inhibit 97.4 0.0011 2.3E-08 79.0 13.0 38 10-49 1-38 (617)
294 TIGR02733 desat_CrtD C-3',4' d 97.4 0.00011 2.4E-09 88.7 5.0 41 10-52 2-42 (492)
295 PLN02985 squalene monooxygenas 97.4 0.0011 2.4E-08 79.5 13.3 35 8-44 42-76 (514)
296 PRK07057 sdhA succinate dehydr 97.4 0.0014 2.9E-08 80.4 14.3 38 9-48 12-49 (591)
297 PRK08401 L-aspartate oxidase; 97.4 0.0012 2.7E-08 78.5 13.4 34 10-45 2-35 (466)
298 PRK07804 L-aspartate oxidase; 97.4 0.00061 1.3E-08 82.6 10.9 38 9-48 16-53 (541)
299 PRK06854 adenylylsulfate reduc 97.4 0.0004 8.7E-09 85.2 9.4 38 9-46 11-48 (608)
300 PLN02529 lysine-specific histo 97.4 0.00014 3.1E-09 89.1 5.2 43 8-52 159-201 (738)
301 TIGR02734 crtI_fam phytoene de 97.4 0.00012 2.7E-09 88.5 4.5 39 12-52 1-39 (502)
302 PRK07573 sdhA succinate dehydr 97.4 0.00039 8.4E-09 85.6 8.7 37 9-47 35-71 (640)
303 PRK13339 malate:quinone oxidor 97.4 0.002 4.4E-08 76.1 13.8 40 8-47 5-44 (497)
304 PRK08205 sdhA succinate dehydr 97.3 0.0015 3.2E-08 80.0 13.1 37 9-48 5-41 (583)
305 PLN02676 polyamine oxidase 97.3 0.0002 4.4E-09 85.3 5.4 43 8-52 25-68 (487)
306 TIGR00137 gid_trmFO tRNA:m(5)U 97.3 0.00054 1.2E-08 78.6 8.4 35 11-47 2-36 (433)
307 PRK06263 sdhA succinate dehydr 97.3 0.00047 1E-08 83.8 8.5 38 9-49 7-45 (543)
308 TIGR02731 phytoene_desat phyto 97.3 0.00017 3.6E-09 86.1 4.5 39 11-51 1-39 (453)
309 KOG1276|consensus 97.3 0.00026 5.6E-09 77.9 5.3 44 8-51 10-53 (491)
310 PRK06134 putative FAD-binding 97.3 0.00082 1.8E-08 82.3 10.4 43 8-52 11-53 (581)
311 TIGR01176 fum_red_Fp fumarate 97.3 0.0016 3.4E-08 79.4 12.7 41 10-50 4-44 (580)
312 COG1635 THI4 Ribulose 1,5-bisp 97.3 0.00015 3.3E-09 72.5 3.1 42 738-781 29-71 (262)
313 PTZ00139 Succinate dehydrogena 97.3 0.0016 3.5E-08 80.0 12.7 38 9-48 29-66 (617)
314 KOG2404|consensus 97.3 0.0013 2.9E-08 69.3 9.8 39 11-51 11-49 (477)
315 TIGR02730 carot_isom carotene 97.3 0.00025 5.5E-09 85.4 5.2 42 10-53 1-42 (493)
316 PLN00128 Succinate dehydrogena 97.2 0.0018 3.8E-08 79.6 11.8 38 9-48 50-87 (635)
317 COG1231 Monoamine oxidase [Ami 97.2 0.00048 1E-08 77.3 5.6 43 7-51 5-47 (450)
318 TIGR01811 sdhA_Bsu succinate d 97.2 0.00095 2.1E-08 81.7 8.8 34 12-47 1-34 (603)
319 PLN02487 zeta-carotene desatur 97.2 0.0004 8.7E-09 83.5 5.3 41 9-51 75-115 (569)
320 PF06039 Mqo: Malate:quinone o 97.2 0.0018 3.9E-08 73.1 9.9 39 9-47 3-41 (488)
321 TIGR02732 zeta_caro_desat caro 97.1 0.00039 8.4E-09 82.9 4.9 40 11-52 1-40 (474)
322 PLN02328 lysine-specific histo 97.1 0.00047 1E-08 85.1 5.1 43 8-52 237-279 (808)
323 PF01946 Thi4: Thi4 family; PD 96.9 0.00046 1E-08 69.9 2.4 41 739-781 17-58 (230)
324 TIGR02485 CobZ_N-term precorri 96.9 0.003 6.6E-08 74.7 9.6 36 14-51 1-38 (432)
325 PLN02976 amine oxidase 96.9 0.00098 2.1E-08 84.9 5.6 43 8-52 692-734 (1713)
326 PLN02612 phytoene desaturase 96.9 0.00089 1.9E-08 81.5 5.0 42 8-51 92-133 (567)
327 KOG2820|consensus 96.9 0.0045 9.8E-08 66.3 9.4 158 6-177 4-217 (399)
328 PLN03000 amine oxidase 96.9 0.00089 1.9E-08 82.7 4.6 43 8-52 183-225 (881)
329 PF13454 NAD_binding_9: FAD-NA 96.8 0.0041 8.8E-08 62.0 8.2 40 743-782 1-44 (156)
330 PTZ00363 rab-GDP dissociation 96.8 0.0012 2.6E-08 77.1 5.0 44 7-52 2-45 (443)
331 KOG0029|consensus 96.8 0.00067 1.5E-08 80.0 2.9 44 736-781 12-55 (501)
332 PF01266 DAO: FAD dependent ox 96.7 0.0014 3.1E-08 75.4 4.9 35 11-48 1-35 (358)
333 PRK12839 hypothetical protein; 96.7 0.0018 3.8E-08 78.9 5.4 43 8-52 7-49 (572)
334 COG0578 GlpA Glycerol-3-phosph 96.7 0.0091 2E-07 69.8 10.8 42 8-51 11-52 (532)
335 PF01134 GIDA: Glucose inhibit 96.7 0.0024 5.2E-08 72.1 5.7 29 871-899 1-29 (392)
336 PLN02927 antheraxanthin epoxid 96.7 0.0016 3.4E-08 79.1 4.6 35 8-44 80-114 (668)
337 PRK11728 hydroxyglutarate oxid 96.6 0.0018 3.9E-08 75.7 4.9 39 10-48 3-41 (393)
338 PRK12842 putative succinate de 96.6 0.0019 4E-08 79.2 5.2 42 9-52 9-50 (574)
339 PRK05335 tRNA (uracil-5-)-meth 96.6 0.0019 4.1E-08 73.6 4.8 35 10-46 3-37 (436)
340 TIGR02462 pyranose_ox pyranose 96.6 0.0017 3.6E-08 77.3 4.5 40 10-51 1-40 (544)
341 PRK12845 3-ketosteroid-delta-1 96.6 0.0018 3.9E-08 78.6 4.4 41 9-52 16-56 (564)
342 PRK12834 putative FAD-binding 96.6 0.0021 4.6E-08 78.3 5.0 42 9-52 4-47 (549)
343 TIGR01789 lycopene_cycl lycope 96.6 0.0061 1.3E-07 70.1 8.6 101 871-971 1-138 (370)
344 PRK13369 glycerol-3-phosphate 96.6 0.0022 4.9E-08 77.2 5.2 41 7-49 4-44 (502)
345 PRK09078 sdhA succinate dehydr 96.6 0.0022 4.8E-08 78.6 5.2 40 9-50 12-51 (598)
346 COG4529 Uncharacterized protei 96.6 0.012 2.6E-07 67.0 10.4 42 741-782 3-45 (474)
347 PRK05257 malate:quinone oxidor 96.5 0.0024 5.2E-08 76.1 4.8 40 8-47 4-43 (494)
348 PRK12837 3-ketosteroid-delta-1 96.5 0.0023 5.1E-08 77.1 4.5 40 9-51 7-46 (513)
349 PTZ00367 squalene epoxidase; P 96.5 0.0026 5.5E-08 76.8 4.7 35 8-44 32-66 (567)
350 PRK12835 3-ketosteroid-delta-1 96.4 0.0032 7E-08 76.9 5.4 42 8-51 10-51 (584)
351 PRK12844 3-ketosteroid-delta-1 96.4 0.0029 6.2E-08 77.0 4.9 42 9-52 6-47 (557)
352 PRK07843 3-ketosteroid-delta-1 96.4 0.003 6.6E-08 76.9 5.0 42 9-52 7-48 (557)
353 COG1232 HemY Protoporphyrinoge 96.3 0.0021 4.7E-08 74.0 3.0 41 742-782 3-43 (444)
354 KOG2614|consensus 96.3 0.0038 8.1E-08 69.2 4.5 35 10-46 3-37 (420)
355 PRK11259 solA N-methyltryptoph 96.3 0.0038 8.2E-08 72.6 4.9 35 9-45 3-37 (376)
356 COG0445 GidA Flavin-dependent 96.3 0.018 3.8E-07 66.1 9.7 34 9-44 4-37 (621)
357 COG0665 DadA Glycine/D-amino a 96.3 0.0043 9.3E-08 72.5 5.2 37 8-46 3-39 (387)
358 TIGR01320 mal_quin_oxido malat 96.3 0.0036 7.8E-08 74.5 4.5 38 10-47 1-38 (483)
359 PRK09231 fumarate reductase fl 96.3 0.0039 8.6E-08 76.2 4.7 43 9-51 4-46 (582)
360 PRK00711 D-amino acid dehydrog 96.2 0.0039 8.6E-08 73.6 4.6 36 10-47 1-36 (416)
361 COG2509 Uncharacterized FAD-de 96.2 0.036 7.9E-07 62.3 11.6 60 100-173 172-231 (486)
362 TIGR01377 soxA_mon sarcosine o 96.2 0.0043 9.4E-08 72.2 4.7 34 10-45 1-34 (380)
363 PTZ00383 malate:quinone oxidor 96.2 0.0052 1.1E-07 73.0 5.1 40 8-47 44-83 (497)
364 KOG2960|consensus 96.2 0.0017 3.7E-08 64.2 0.8 42 10-51 77-119 (328)
365 TIGR03329 Phn_aa_oxid putative 96.2 0.0046 9.9E-08 73.8 4.5 36 9-44 24-59 (460)
366 TIGR03364 HpnW_proposed FAD de 96.1 0.0057 1.2E-07 70.8 4.8 33 10-44 1-33 (365)
367 COG3380 Predicted NAD/FAD-depe 96.0 0.0045 9.8E-08 64.3 3.1 46 741-788 3-48 (331)
368 PRK01438 murD UDP-N-acetylmura 96.0 0.018 4E-07 69.2 8.7 34 9-44 16-49 (480)
369 PRK06452 sdhA succinate dehydr 96.0 0.0061 1.3E-07 74.3 4.6 39 9-49 5-43 (566)
370 PRK07208 hypothetical protein; 96.0 0.0042 9E-08 74.8 3.1 46 738-785 3-48 (479)
371 PRK11883 protoporphyrinogen ox 96.0 0.0038 8.2E-08 74.6 2.6 43 741-783 2-44 (451)
372 COG1233 Phytoene dehydrogenase 96.0 0.0042 9.1E-08 74.3 3.0 46 738-785 2-47 (487)
373 PRK08958 sdhA succinate dehydr 95.9 0.007 1.5E-07 74.0 4.5 40 9-50 7-46 (588)
374 PRK01747 mnmC bifunctional tRN 95.9 0.0074 1.6E-07 75.5 4.6 36 10-47 261-296 (662)
375 PLN02268 probable polyamine ox 95.8 0.0046 9.9E-08 73.4 2.6 40 741-782 2-41 (435)
376 PLN02463 lycopene beta cyclase 95.8 0.047 1E-06 64.2 10.8 103 870-972 29-170 (447)
377 PRK12843 putative FAD-binding 95.8 0.0084 1.8E-07 73.4 4.8 42 9-52 16-57 (578)
378 PRK07233 hypothetical protein; 95.8 0.0056 1.2E-07 72.8 3.0 40 741-782 1-40 (434)
379 PRK07236 hypothetical protein; 95.8 0.032 6.9E-07 65.1 9.2 35 868-902 5-39 (386)
380 PRK06069 sdhA succinate dehydr 95.8 0.008 1.7E-07 73.7 4.3 43 9-51 5-48 (577)
381 PTZ00306 NADH-dependent fumara 95.8 0.0084 1.8E-07 79.2 4.7 41 9-51 409-449 (1167)
382 PF00732 GMC_oxred_N: GMC oxid 95.7 0.0091 2E-07 66.8 4.4 35 10-45 1-35 (296)
383 PRK05868 hypothetical protein; 95.7 0.028 6.2E-07 65.0 8.5 33 870-902 2-34 (372)
384 PRK09077 L-aspartate oxidase; 95.7 0.01 2.2E-07 72.0 5.0 38 9-49 8-45 (536)
385 PRK11101 glpA sn-glycerol-3-ph 95.7 0.0098 2.1E-07 72.3 4.8 34 9-44 6-39 (546)
386 PLN02815 L-aspartate oxidase 95.7 0.011 2.3E-07 72.2 5.1 38 9-49 29-66 (594)
387 KOG0685|consensus 95.7 0.0067 1.4E-07 68.3 2.9 40 741-781 23-62 (498)
388 COG0562 Glf UDP-galactopyranos 95.7 0.01 2.2E-07 63.3 3.9 42 741-784 3-44 (374)
389 TIGR00292 thiazole biosynthesi 95.6 0.0068 1.5E-07 65.5 2.6 41 739-781 21-62 (254)
390 PRK06847 hypothetical protein; 95.6 0.059 1.3E-06 62.6 10.6 34 869-902 4-37 (375)
391 COG3349 Uncharacterized conser 95.6 0.0069 1.5E-07 69.6 2.6 38 741-780 2-39 (485)
392 PLN02464 glycerol-3-phosphate 95.5 0.013 2.9E-07 72.1 4.9 41 8-50 70-110 (627)
393 PRK04176 ribulose-1,5-biphosph 95.5 0.0081 1.8E-07 65.1 2.6 38 739-778 25-62 (257)
394 TIGR00031 UDP-GALP_mutase UDP- 95.5 0.0086 1.9E-07 68.3 2.9 40 741-782 3-42 (377)
395 PLN02676 polyamine oxidase 95.5 0.0088 1.9E-07 71.4 3.1 47 739-787 26-73 (487)
396 PRK07512 L-aspartate oxidase; 95.5 0.014 3.1E-07 70.3 4.9 41 1-45 1-41 (513)
397 PRK08626 fumarate reductase fl 95.5 0.013 2.8E-07 72.6 4.5 38 9-48 5-42 (657)
398 PRK07395 L-aspartate oxidase; 95.4 0.016 3.5E-07 70.3 5.3 40 8-50 8-47 (553)
399 TIGR01373 soxB sarcosine oxida 95.4 0.016 3.5E-07 68.1 5.1 36 8-44 29-65 (407)
400 KOG1298|consensus 95.4 0.097 2.1E-06 57.3 10.0 33 9-43 45-77 (509)
401 KOG3851|consensus 95.4 0.015 3.2E-07 61.7 3.9 104 871-977 41-151 (446)
402 TIGR02734 crtI_fam phytoene de 95.3 0.0089 1.9E-07 72.4 2.6 40 742-783 1-40 (502)
403 PLN02576 protoporphyrinogen ox 95.3 0.0094 2E-07 72.1 2.7 40 741-782 14-54 (496)
404 TIGR03862 flavo_PP4765 unchara 95.3 0.029 6.3E-07 63.8 6.3 127 34-176 1-145 (376)
405 TIGR00562 proto_IX_ox protopor 95.3 0.009 1.9E-07 71.6 2.3 40 741-782 4-47 (462)
406 TIGR02061 aprA adenosine phosp 95.3 0.017 3.6E-07 70.5 4.6 33 11-45 1-37 (614)
407 PRK07588 hypothetical protein; 95.3 0.043 9.4E-07 64.1 7.9 33 870-902 1-33 (391)
408 PRK08071 L-aspartate oxidase; 95.2 0.018 3.9E-07 69.4 4.7 39 9-50 3-41 (510)
409 COG3573 Predicted oxidoreducta 95.2 0.023 5.1E-07 60.4 4.9 40 9-50 5-46 (552)
410 COG0644 FixC Dehydrogenases (f 95.2 0.012 2.6E-07 68.7 2.8 39 738-778 2-40 (396)
411 KOG4254|consensus 95.1 0.016 3.5E-07 64.5 3.4 45 7-53 12-56 (561)
412 COG1053 SdhA Succinate dehydro 95.1 0.021 4.5E-07 68.6 4.7 38 8-47 5-42 (562)
413 PRK02106 choline dehydrogenase 95.1 0.022 4.8E-07 69.8 5.0 35 9-44 5-39 (560)
414 PF03486 HI0933_like: HI0933-l 95.1 0.011 2.4E-07 68.3 2.2 35 741-777 2-36 (409)
415 PF04820 Trp_halogenase: Trypt 94.9 0.022 4.7E-07 67.4 4.1 34 11-44 1-35 (454)
416 TIGR02733 desat_CrtD C-3',4' d 94.9 0.016 3.4E-07 70.0 3.0 40 741-782 3-42 (492)
417 KOG1276|consensus 94.9 0.018 3.9E-07 63.9 3.0 42 740-781 12-53 (491)
418 PRK12416 protoporphyrinogen ox 94.8 0.016 3.5E-07 69.4 2.8 41 741-781 3-47 (463)
419 KOG2665|consensus 94.8 0.022 4.8E-07 60.3 3.3 40 8-47 47-86 (453)
420 PF12831 FAD_oxidored: FAD dep 94.8 0.015 3.3E-07 68.5 2.4 40 741-782 1-40 (428)
421 TIGR02731 phytoene_desat phyto 94.8 0.017 3.6E-07 69.1 2.8 38 742-781 2-39 (453)
422 PRK01438 murD UDP-N-acetylmura 94.7 0.016 3.4E-07 69.7 2.3 91 867-985 14-106 (480)
423 PF05834 Lycopene_cycl: Lycope 94.6 0.077 1.7E-06 61.4 7.5 41 652-692 99-143 (374)
424 KOG2311|consensus 94.5 0.056 1.2E-06 60.6 5.7 30 871-900 30-59 (679)
425 COG3075 GlpB Anaerobic glycero 94.5 0.039 8.4E-07 59.1 4.2 33 9-43 2-34 (421)
426 COG0445 GidA Flavin-dependent 94.4 0.04 8.7E-07 63.3 4.4 31 870-900 5-35 (621)
427 COG2907 Predicted NAD/FAD-bind 94.4 0.024 5.1E-07 61.1 2.4 41 738-781 7-47 (447)
428 TIGR02032 GG-red-SF geranylger 94.4 0.026 5.6E-07 63.0 2.8 36 741-778 2-37 (295)
429 TIGR02730 carot_isom carotene 94.3 0.025 5.4E-07 68.2 2.8 41 741-783 2-42 (493)
430 PLN02568 polyamine oxidase 94.2 0.027 5.9E-07 67.9 2.8 45 739-783 5-52 (539)
431 PLN02529 lysine-specific histo 94.2 0.027 5.8E-07 69.6 2.6 43 738-782 159-201 (738)
432 KOG2415|consensus 94.2 0.034 7.3E-07 61.2 3.0 43 738-780 75-121 (621)
433 PRK13977 myosin-cross-reactive 94.1 0.03 6.5E-07 66.4 2.8 42 740-781 23-66 (576)
434 COG1231 Monoamine oxidase [Ami 94.1 0.031 6.8E-07 63.1 2.6 42 738-781 6-47 (450)
435 TIGR02732 zeta_caro_desat caro 93.9 0.033 7.1E-07 66.5 2.6 38 742-781 2-39 (474)
436 KOG2960|consensus 93.8 0.022 4.8E-07 56.6 0.6 43 739-781 76-119 (328)
437 PF01494 FAD_binding_3: FAD bi 93.8 0.031 6.6E-07 64.2 1.9 34 741-776 3-36 (356)
438 PRK10015 oxidoreductase; Provi 93.7 0.037 8E-07 65.2 2.5 36 740-777 6-41 (429)
439 PRK13800 putative oxidoreducta 93.7 0.054 1.2E-06 69.9 4.2 35 9-45 13-47 (897)
440 PRK06753 hypothetical protein; 93.7 0.082 1.8E-06 61.3 5.3 28 265-292 6-33 (373)
441 PLN00093 geranylgeranyl diphos 93.6 0.051 1.1E-06 64.2 3.5 53 720-774 20-72 (450)
442 TIGR03378 glycerol3P_GlpB glyc 93.6 0.063 1.4E-06 61.6 4.1 33 10-44 1-33 (419)
443 PRK10157 putative oxidoreducta 93.6 0.04 8.6E-07 65.0 2.6 37 740-778 6-42 (428)
444 TIGR01790 carotene-cycl lycope 93.6 0.04 8.7E-07 64.3 2.6 38 741-780 1-38 (388)
445 PLN02661 Putative thiazole syn 93.6 0.038 8.2E-07 61.6 2.2 41 739-781 92-134 (357)
446 TIGR01810 betA choline dehydro 93.6 0.058 1.3E-06 65.7 4.1 33 11-44 1-33 (532)
447 PRK09126 hypothetical protein; 93.6 0.037 8E-07 64.7 2.2 36 738-775 2-37 (392)
448 PF13241 NAD_binding_7: Putati 93.4 0.067 1.5E-06 48.9 3.1 36 528-563 4-39 (103)
449 PF13241 NAD_binding_7: Putati 93.4 0.074 1.6E-06 48.6 3.4 35 866-900 4-38 (103)
450 TIGR01988 Ubi-OHases Ubiquinon 93.3 0.042 9.2E-07 64.0 2.2 34 741-776 1-34 (385)
451 PF06100 Strep_67kDa_ant: Stre 93.3 0.092 2E-06 60.4 4.8 44 9-52 2-47 (500)
452 PLN02328 lysine-specific histo 93.3 0.051 1.1E-06 67.6 2.8 44 738-783 237-280 (808)
453 TIGR01984 UbiH 2-polyprenyl-6- 93.1 0.17 3.7E-06 58.9 6.8 32 871-902 1-33 (382)
454 TIGR02028 ChlP geranylgeranyl 93.1 0.055 1.2E-06 63.2 2.6 35 741-777 2-36 (398)
455 PRK08163 salicylate hydroxylas 93.1 0.053 1.2E-06 63.5 2.5 37 739-777 4-40 (396)
456 TIGR00136 gidA glucose-inhibit 93.1 0.15 3.2E-06 61.2 6.2 31 871-901 2-32 (617)
457 TIGR00275 flavoprotein, HI0933 93.0 0.049 1.1E-06 63.5 2.1 38 743-782 1-38 (400)
458 KOG2853|consensus 92.9 0.085 1.8E-06 56.6 3.4 37 9-45 86-124 (509)
459 PLN02487 zeta-carotene desatur 92.9 0.059 1.3E-06 65.1 2.6 39 741-781 77-115 (569)
460 PRK06184 hypothetical protein; 92.8 0.064 1.4E-06 64.9 2.6 36 739-776 3-38 (502)
461 PRK06475 salicylate hydroxylas 92.7 0.069 1.5E-06 62.6 2.8 35 740-776 3-37 (400)
462 PF01266 DAO: FAD dependent ox 92.7 0.06 1.3E-06 61.9 2.2 35 741-778 1-35 (358)
463 PF01210 NAD_Gly3P_dh_N: NAD-d 92.7 0.14 2.9E-06 51.1 4.4 32 11-44 1-32 (157)
464 PF00890 FAD_binding_2: FAD bi 92.7 0.06 1.3E-06 63.5 2.2 38 741-780 1-38 (417)
465 COG2303 BetA Choline dehydroge 92.7 0.11 2.4E-06 62.9 4.4 36 7-44 5-40 (542)
466 PRK07045 putative monooxygenas 92.6 0.061 1.3E-06 62.7 2.2 35 740-776 6-40 (388)
467 PLN02976 amine oxidase 92.6 0.066 1.4E-06 69.1 2.5 44 739-784 693-736 (1713)
468 PRK07364 2-octaprenyl-6-methox 92.6 0.067 1.5E-06 63.1 2.4 36 739-776 18-53 (415)
469 TIGR02360 pbenz_hydroxyl 4-hyd 92.5 0.066 1.4E-06 62.4 2.2 34 740-775 3-36 (390)
470 PRK08013 oxidoreductase; Provi 92.4 0.068 1.5E-06 62.6 2.3 34 740-775 4-37 (400)
471 PLN03000 amine oxidase 92.4 0.08 1.7E-06 66.0 2.8 44 739-784 184-227 (881)
472 PRK06481 fumarate reductase fl 92.4 0.082 1.8E-06 63.8 2.9 42 736-779 58-99 (506)
473 PRK08849 2-octaprenyl-3-methyl 92.4 0.072 1.6E-06 62.0 2.3 33 740-774 4-36 (384)
474 PRK07608 ubiquinone biosynthes 92.3 0.077 1.7E-06 61.9 2.5 36 739-776 5-40 (388)
475 PRK07538 hypothetical protein; 92.3 0.076 1.6E-06 62.5 2.4 34 741-776 2-35 (413)
476 PRK11728 hydroxyglutarate oxid 92.2 0.081 1.8E-06 61.8 2.5 37 740-778 3-41 (393)
477 PRK12409 D-amino acid dehydrog 92.2 0.082 1.8E-06 62.2 2.6 36 740-777 2-37 (410)
478 TIGR02023 BchP-ChlP geranylger 92.2 0.073 1.6E-06 62.1 2.0 31 741-773 2-32 (388)
479 PRK06719 precorrin-2 dehydroge 92.2 0.17 3.6E-06 50.2 4.3 34 866-899 10-43 (157)
480 COG0029 NadB Aspartate oxidase 92.2 0.16 3.4E-06 58.2 4.4 31 11-44 9-39 (518)
481 KOG2852|consensus 92.1 0.085 1.8E-06 55.5 2.1 44 6-49 7-54 (380)
482 PRK12837 3-ketosteroid-delta-1 92.1 0.1 2.2E-06 63.1 3.2 42 736-780 4-45 (513)
483 PRK07333 2-octaprenyl-6-methox 92.0 0.087 1.9E-06 61.8 2.4 36 740-775 2-37 (403)
484 PRK05732 2-octaprenyl-6-methox 91.9 0.079 1.7E-06 62.0 1.9 34 738-773 2-38 (395)
485 PRK07121 hypothetical protein; 91.7 0.1 2.2E-06 62.9 2.6 40 738-779 19-58 (492)
486 PLN02612 phytoene desaturase 91.7 0.1 2.2E-06 63.7 2.6 39 740-780 94-132 (567)
487 TIGR03219 salicylate_mono sali 91.6 0.1 2.2E-06 61.4 2.5 36 741-777 2-37 (414)
488 COG0654 UbiH 2-polyprenyl-6-me 91.6 0.093 2E-06 61.1 2.1 32 740-773 3-34 (387)
489 PRK08773 2-octaprenyl-3-methyl 91.6 0.094 2E-06 61.3 2.1 35 739-775 6-40 (392)
490 PRK05335 tRNA (uracil-5-)-meth 91.6 0.17 3.7E-06 58.1 4.0 32 870-901 3-34 (436)
491 COG0579 Predicted dehydrogenas 91.6 0.11 2.5E-06 59.6 2.6 40 738-777 2-41 (429)
492 PRK05714 2-octaprenyl-3-methyl 91.5 0.093 2E-06 61.6 1.9 33 740-774 3-35 (405)
493 PRK08244 hypothetical protein; 91.5 0.11 2.4E-06 62.7 2.6 34 740-775 3-36 (493)
494 PRK08243 4-hydroxybenzoate 3-m 91.4 0.1 2.2E-06 60.9 2.2 34 740-775 3-36 (392)
495 TIGR01470 cysG_Nterm siroheme 91.4 0.21 4.6E-06 51.9 4.2 35 866-900 6-40 (205)
496 PTZ00363 rab-GDP dissociation 91.4 0.12 2.6E-06 60.6 2.5 41 739-781 4-44 (443)
497 PRK06617 2-octaprenyl-6-methox 91.3 0.1 2.2E-06 60.4 2.1 33 740-774 2-34 (374)
498 PRK12842 putative succinate de 91.1 0.13 2.8E-06 63.2 2.6 41 739-781 9-49 (574)
499 PRK07494 2-octaprenyl-6-methox 91.0 0.13 2.8E-06 60.1 2.4 35 740-776 8-42 (388)
500 PRK12845 3-ketosteroid-delta-1 91.0 0.16 3.5E-06 61.8 3.3 44 737-783 14-57 (564)
No 1
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=3.1e-56 Score=523.53 Aligned_cols=371 Identities=31% Similarity=0.512 Sum_probs=227.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGHK 820 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~~ 820 (1129)
.|+|||||++||++|+.|+++| ++++||||++++||+|+++.++.. -.+++|+++.+|++++++.|+|||+|
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~g--~~~~~fE~~~~iGG~W~~~~~~~~------g~~~~y~sl~~n~sk~~~~fsdfp~p 74 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEEG--LEVTCFEKSDDIGGLWRYTENPED------GRSSVYDSLHTNTSKEMMAFSDFPFP 74 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT---EEEEEESSSSSSGGGCHSTTCCC------SEGGGSTT-B-SS-GGGSCCTTS-HC
T ss_pred EEEEECccHHHHHHHHHHHHCC--CCCeEEecCCCCCccCeeCCcCCC------CccccccceEEeeCchHhcCCCcCCC
Confidence 4789999999999999999999 999999999999999998765432 14679999999999999999999999
Q ss_pred CCCCCCCCChhhhhh-----------------------------------------------------------ccCCCC
Q psy12350 821 GNADKSYIGAKDVLE-----------------------------------------------------------NYNHPI 841 (1129)
Q Consensus 821 ~~~~~~~~~~~~v~~-----------------------------------------------------------~~~~P~ 841 (1129)
++ .+.|+++.++++ +++.|+
T Consensus 75 ~~-~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~ 153 (531)
T PF00743_consen 75 ED-YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPN 153 (531)
T ss_dssp CC-CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCES
T ss_pred CC-CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCC
Confidence 87 889999998887 788999
Q ss_pred CCC--CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC-Cc--------cchhh
Q psy12350 842 YPE--FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS-GL--------DITLD 910 (1129)
Q Consensus 842 ~P~--i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~-~~--------~~~~~ 910 (1129)
+|. +||++.|+|+++||++|++++.++||||+|||+|+||+|||.+|++.+++|++..|... .+ +.+..
T Consensus 154 ~P~~~~~G~e~F~G~i~HS~~yr~~~~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~ 233 (531)
T PF00743_consen 154 IPEPSFPGLEKFKGEIIHSKDYRDPEPFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMV 233 (531)
T ss_dssp B-----CTGGGHCSEEEEGGG--TGGGGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC-------------------
T ss_pred CChhhhhhhhcCCeeEEccccCcChhhcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccc
Confidence 995 99999999999999999999999999999999999999999999999999999866432 11 11100
Q ss_pred ------------hhccccEEEE----ecC-------C---------cccccc-----CCCCCeEEcCCeeEEeCCcEEec
Q psy12350 911 ------------IATRASTVFL----SHH-------S---------ERVTSL-----CLPNNVVLKPDVAELTPTGVRFQ 953 (1129)
Q Consensus 911 ------------~~~~~~~~~~----~~~-------~---------~~~~~~-----~~~~~V~~~~~i~~v~~~~V~~~ 953 (1129)
+.....+.+. ... + .+.+++ ...++|+++++|+++++++|+|+
T Consensus 234 ~~~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~ 313 (531)
T PF00743_consen 234 FSTRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFE 313 (531)
T ss_dssp -----------------------------------------------------------------EE-EEEE-SSEEEET
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0000000000 000 0 011111 22357788888999999999999
Q ss_pred CCcEe-eccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCC--CCcEEEcccccc-chhHHHHHHHHHHHHH
Q psy12350 954 DGSYE-QVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEH--PTMFILGVPRHT-LLFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 954 dG~~~-~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~--p~l~~iG~~~~~-~~~~~~e~qa~~~a~~ 1029 (1129)
||+++ ++|+||+||||+.++|||++++ +...++. ..||+++|+++. |+|+|||.+... +.++++|+||||+|++
T Consensus 314 DGs~~e~vD~II~~TGY~~~fpFL~~~~-~~~~~~~-~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~ElQArw~a~v 391 (531)
T PF00743_consen 314 DGSTEEDVDVIIFCTGYKFSFPFLDESL-IKVDDNR-VRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFELQARWAARV 391 (531)
T ss_dssp TSEEEEE-SEEEE---EE---TTB-TTT-T-S-SSS-SSEETTTEETETTSTTEEESS-SBSSS-HHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccc-ccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence 99986 7999999999999999999754 3444443 479999999864 899999998754 6789999999999999
Q ss_pred HcCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeccCCcHHHHHHHHHhcCCCCCCcHHHHHHHHchhhhhhhcCCCC
Q psy12350 1030 MQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGF 1109 (1129)
Q Consensus 1030 l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~l~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~y 1109 (1129)
|+|+.+||++++|+++++++.+++.++ +.....|.+..++..|+|+||+++|+. |...+.++++++.++..+|+|+
T Consensus 392 ~sG~~~LPs~~~M~~~i~~~~~~~~~~-~~~~~~~~~~~d~~~y~deLA~~iG~~---P~~~~l~~~dp~l~~~~~~gp~ 467 (531)
T PF00743_consen 392 FSGRVKLPSKEEMMEEIEEEQEWRAKR-FGFSPRHTIQVDYIDYMDELAREIGCK---PNFWKLFLTDPKLARKLYFGPC 467 (531)
T ss_dssp HTTSS----HHHHHHHHHHHHHHHHT---SHHHHHHHHHHHHHHHHTTS-------------------------------
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccccccccc---cccccccccccccccccccccc
Confidence 999999999999999999887766554 222234556678999999999999999 7777888899999999999999
Q ss_pred CCCceeecCCCceeeec
Q psy12350 1110 RNNKYQIFNDQAYVRTG 1126 (1129)
Q Consensus 1110 ~~~~Yr~~~~~~~~~~~ 1126 (1129)
.|++||+.||++|+++-
T Consensus 468 ~p~~YRL~Gpg~w~gar 484 (531)
T PF00743_consen 468 TPYQYRLFGPGKWPGAR 484 (531)
T ss_dssp -----------------
T ss_pred ccccccccccccccccc
Confidence 99999999999999863
No 2
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=4.8e-50 Score=466.27 Aligned_cols=365 Identities=26% Similarity=0.451 Sum_probs=307.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCC-----CccccccCcccccccccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGL-----PVHSSMYKSLKTNLPKDLME 813 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~-----p~~~~~y~~~~~~~~~~~~~ 813 (1129)
.-.++|||||++||++|++|+++| ++++||||++.+||+|.++.....+..++ ..++++|+++++|++++.|.
T Consensus 10 ~~~VaIIGAG~aGL~aA~~l~~~G--~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~ 87 (461)
T PLN02172 10 SQHVAVIGAGAAGLVAARELRREG--HTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMG 87 (461)
T ss_pred CCCEEEECCcHHHHHHHHHHHhcC--CeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhcc
Confidence 457899999999999999999999 99999999999999999875433222222 24578999999999999999
Q ss_pred ccCCCCCCC------CCCCCCChhhhhh----------------------------------------------------
Q psy12350 814 LCGYGHKGN------ADKSYIGAKDVLE---------------------------------------------------- 835 (1129)
Q Consensus 814 ~~~~~~~~~------~~~~~~~~~~v~~---------------------------------------------------- 835 (1129)
|+|||+++. +.+.|+++.++++
T Consensus 88 f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~VIv 167 (461)
T PLN02172 88 YRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAVVV 167 (461)
T ss_pred CCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEEEE
Confidence 999998653 2356888887766
Q ss_pred -cc--CCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhh
Q psy12350 836 -NY--NHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIA 912 (1129)
Q Consensus 836 -~~--~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~ 912 (1129)
+| +.|++|++||+++|.|+++|++.|+++++++||+|+|||+|.||+|+|.+|++.+++|+++.+......
T Consensus 168 AtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~------ 241 (461)
T PLN02172 168 CNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDT------ 241 (461)
T ss_pred eccCCCCCcCCCCCCcccCCceEEEecccCCccccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeeccccc------
Confidence 34 789999999999999999999999999999999999999999999999999999999999987431100
Q ss_pred ccccEEEEecCCccccccCCCCCeEEcCCeeEEeC-CcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccc
Q psy12350 913 TRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTP-TGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQP 991 (1129)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~~-~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ 991 (1129)
. .. +. .-..++.+...|.++.+ ++|+|.||+.+++|.||+||||++++|||+....+..+++.+.+
T Consensus 242 ------~-~~-----~~-~~~~~v~~~~~I~~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~ 308 (461)
T PLN02172 242 ------Y-EK-----LP-VPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEP 308 (461)
T ss_pred ------c-cc-----Cc-CCCCceEECCcccceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchh
Confidence 0 00 00 00124555555666544 44999999999999999999999999999864446677777778
Q ss_pred cccceeecCC-CCcEEEccccccchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeccCCc
Q psy12350 992 LYKHTINIEH-PTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRS 1070 (1129)
Q Consensus 992 ly~~~~~~~~-p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1070 (1129)
||+++|++.. |+|+|||.+..+++|+++|+||+|+|++|+|+..||+.++|+++++++.+.+.+.+.+.++.|.+...+
T Consensus 309 Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~Qa~~~a~v~sG~~~LPs~~~m~~~~~~~~~~~~~~g~~~r~~h~~~~~~ 388 (461)
T PLN02172 309 LYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINAWYASLEALGIPKRYTHKLGKIQ 388 (461)
T ss_pred hHHhhcCCCCCCcEEEEeccccccCchhHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHHHHhcCCCCceeEEcCccH
Confidence 9999999975 999999999878899999999999999999999999999999999998887766777778889887789
Q ss_pred HHHHHHHHHhcCCCCCCcHHHHHHHHchhhhhhhcCCCCCCC----ceeecCCCceeee
Q psy12350 1071 ENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNN----KYQIFNDQAYVRT 1125 (1129)
Q Consensus 1071 ~~y~d~l~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~----~Yr~~~~~~~~~~ 1125 (1129)
..|+|+|++++|++ ++++|+++++......+.++...||+. +|++...+.|.+.
T Consensus 389 ~~y~~~la~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 446 (461)
T PLN02172 389 SEYLNWIAEECGCP-LVEHWRYQEVDRGYQRLVSQPETYRDEWDDDDLMEEAYEDFARK 446 (461)
T ss_pred HHHHHHHHHHhCCC-CCHHHHHHHHHHHHHHHHhCHHhhccccccccceeecccccceE
Confidence 99999999999998 888999999999999999999999998 7877777766543
No 3
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=100.00 E-value=4.2e-51 Score=480.18 Aligned_cols=363 Identities=29% Similarity=0.452 Sum_probs=246.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||||||||+|||+|||+|++ .|+++++|||++++||+|.|..++.. ..+++|+++++|+|+++|.|+||||
T Consensus 2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iGG~W~~~~~~~~------g~~~~y~sl~~n~sk~~~~fsdfp~ 73 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIGGLWRYTENPED------GRSSVYDSLHTNTSKEMMAFSDFPF 73 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSSGGGCHSTTCCC------SEGGGSTT-B-SS-GGGSCCTTS-H
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCCccCeeCCcCCC------CccccccceEEeeCchHhcCCCcCC
Confidence 799999999999999999999 56999999999999999998665331 2478999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecccccc--CCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLIN--IEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
|+. .+.|++++++.+||++||++|+|.++|+|||+|++|++.... .+.|+++.. .+++..+..|| +||||
T Consensus 74 p~~-~p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~--~~g~~~~~~fD-----~Vvva 145 (531)
T PF00743_consen 74 PED-YPDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTE--NDGKEETEEFD-----AVVVA 145 (531)
T ss_dssp CCC-CSSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEET--TTTEEEEEEEC-----EEEEE
T ss_pred CCC-CCCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEee--cCCeEEEEEeC-----eEEEc
Confidence 976 567999999999999999999999999999999999874321 234666543 34444566899 99999
Q ss_pred cccCCCCCccc--cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 168 QGHVTLPSKAE--MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 168 tG~~~~p~~p~--i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
||+++.|++|. +||. +.|+|+ -+|++. |+.++.|.
T Consensus 146 tG~~~~P~~P~~~~~G~--e~F~G~-------------i~HS~~---------------------------yr~~~~f~- 182 (531)
T PF00743_consen 146 TGHFSKPNIPEPSFPGL--EKFKGE-------------IIHSKD---------------------------YRDPEPFK- 182 (531)
T ss_dssp E-SSSCESB-----CTG--GGHCSE-------------EEEGGG-----------------------------TGGGGT-
T ss_pred CCCcCCCCCChhhhhhh--hcCCee-------------EEcccc---------------------------CcChhhcC-
Confidence 99999999995 7774 345553 234433 37777764
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcc-cc---------------------------
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVK-KL--------------------------- 297 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~-~~--------------------------- 297 (1129)
+|+|+| ||+|.||+|+|.+|+..+++|+++.|+.... +.
T Consensus 183 --gKrVlV-----------VG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~~R~~~~l~~~lp~~ 249 (531)
T PF00743_consen 183 --GKRVLV-----------VGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFSTRFSSFLQKNLPES 249 (531)
T ss_dssp --TSEEEE-----------ESSSHHHHHHHHHHTTTSCCEEEECC-----------------------------------
T ss_pred --CCEEEE-----------EeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccccccccccccccccc
Confidence 566655 7999999999999999999999999877210 00
Q ss_pred -----------------------------------------cCCCCeEEcCCceEEcCCceEEcCCCEe-ecCEEEEccc
Q psy12350 298 -----------------------------------------RFPNNVVKKPDIAELTPTGVRFQDGSYE-QVDIILYCTG 335 (1129)
Q Consensus 298 -----------------------------------------~~~~~i~~~~~v~~~~~~~v~~~dg~~~-~~D~VI~atG 335 (1129)
...++|..++.|+++++++|+|+||+++ ++|.||+|||
T Consensus 250 ~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~vk~~I~~~~~~~v~F~DGs~~e~vD~II~~TG 329 (531)
T PF00743_consen 250 LSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKVKPDIKRFTENSVIFEDGSTEEDVDVIIFCTG 329 (531)
T ss_dssp -------------------------------------------------EE-EEEE-SSEEEETTSEEEEE-SEEEE---
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 0011456678899999999999999975 7999999999
Q ss_pred ccccCCCCCCCCCeEeecCcccccccccccCC--CCCeEEeccccc----ccccccccceeeehhhcccccccccccccc
Q psy12350 336 YTYRYPFLHESCGIKVVNKNVQPLYKHLINIE--HPSMCIIGYTYR----YPFLHESCGIKVVNKNVQPLYKHLINIEHP 409 (1129)
Q Consensus 336 ~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~--~p~l~~~G~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 409 (1129)
|+.++|||+++. +.+.+ +...||+++|+++ +|+|+|+|+++. +|+++ +|| +|++..++|+++|
T Consensus 330 Y~~~fpFL~~~~-~~~~~-~~~~LYk~vfp~~~~~ptLafIG~~~~~g~~fp~~E--lQA----rw~a~v~sG~~~L--- 398 (531)
T PF00743_consen 330 YKFSFPFLDESL-IKVDD-NRVRLYKHVFPPNLDHPTLAFIGLVQPFGSIFPIFE--LQA----RWAARVFSGRVKL--- 398 (531)
T ss_dssp EE---TTB-TTT-T-S-S-SSSSEETTTEETETTSTTEEESS-SBSSS-HHHHHH--HHH----HHHHHHHTTSS-----
T ss_pred cccccccccccc-ccccc-cccccccccccccccccccccccccccccccccccc--ccc----ccccccccccccc---
Confidence 999999999764 44433 3467999999874 699999999863 24455 885 5566677788888
Q ss_pred cceecCCCcccchhhhhcccccccccccccCCCCCcCcCCCChHHHHHHHHhcccceec
Q psy12350 410 SMCIIGIPVESCGIKVVNKNVQPLYKHLINIDHPSMCIIGIPGDTVVFYMFDLQDKIRP 468 (1129)
Q Consensus 410 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~y~~~~~~~i~~ 468 (1129)
|++++|++|+.++....-+. |.. ........++..|+.+++..+..
T Consensus 399 -------Ps~~~M~~~i~~~~~~~~~~-----~~~-~~~~~~~~d~~~y~deLA~~iG~ 444 (531)
T PF00743_consen 399 -------PSKEEMMEEIEEEQEWRAKR-----FGF-SPRHTIQVDYIDYMDELAREIGC 444 (531)
T ss_dssp ---------HHHHHHHHHHHHHHHHT-------SH-HHHHHHHHHHHHHHHTTS-----
T ss_pred -------cccccccccccccccccccc-----ccc-ccccccccccccccccccccccc
Confidence 99999999998875432211 110 11123456777888888766554
No 4
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=100.00 E-value=1.1e-48 Score=454.95 Aligned_cols=346 Identities=28% Similarity=0.461 Sum_probs=272.1
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCC-----CccCcccccccccCCcc
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGL-----PVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~-----~~~~~~y~~l~~~~~~~ 80 (1129)
+...++|||||||||||+||++|++ .|++|+||||++.+||+|.|++....+..++ ..++++|++|++|+|++
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~ 84 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE 84 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence 3456899999999999999999999 5689999999999999999977654333333 24688999999999999
Q ss_pred ccccCCCCCCCC------CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 81 IMELSGYHHKGH------PDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 81 ~~~~~d~~~~~~------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
+|+|+|||++.. ..+.||++.++.+||++|++++++..+|+|+++|++|++. .+.|.++..+. .+.....
T Consensus 85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~---~~~w~V~~~~~-~~~~~~~ 160 (461)
T PLN02172 85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPV---DGKWRVQSKNS-GGFSKDE 160 (461)
T ss_pred hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeec---CCeEEEEEEcC-CCceEEE
Confidence 999999998752 2357999999999999999999998889999999999873 25677776542 1122345
Q ss_pred EecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccc
Q psy12350 155 LFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFE 234 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 234 (1129)
.|| +||||||+++.|++|++||. +.++|+ .+|++.
T Consensus 161 ~~d-----~VIvAtG~~~~P~~P~ipG~--~~f~G~-------------~iHs~~------------------------- 195 (461)
T PLN02172 161 IFD-----AVVVCNGHYTEPNVAHIPGI--KSWPGK-------------QIHSHN------------------------- 195 (461)
T ss_pred EcC-----EEEEeccCCCCCcCCCCCCc--ccCCce-------------EEEecc-------------------------
Confidence 789 99999999999999999884 233332 233333
Q ss_pred cccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc---cCC-CCeEEcCCce
Q psy12350 235 SFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL---RFP-NNVVKKPDIA 310 (1129)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~---~~~-~~i~~~~~v~ 310 (1129)
++.++.+ ++++++| ||+|.||+|+|..|+..+++|++++|+...... ..+ .++...+.|.
T Consensus 196 --yr~~~~~---~gk~VvV-----------VG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~~~~~~~~~~v~~~~~I~ 259 (461)
T PLN02172 196 --YRVPDPF---KNEVVVV-----------IGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEID 259 (461)
T ss_pred --cCCcccc---CCCEEEE-----------ECCCcCHHHHHHHHHHhCCeEEEEEeeccccccccCcCCCCceEECCccc
Confidence 2555555 3555555 799999999999999999999999997644211 111 3567777787
Q ss_pred EEcCC-ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCC-CCCeEEeccccc-cccccccc
Q psy12350 311 ELTPT-GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIE-HPSMCIIGYTYR-YPFLHESC 387 (1129)
Q Consensus 311 ~~~~~-~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~p~l~~~G~~~~-~~~~~~~~ 387 (1129)
++.++ +|+|+||+++++|.||+||||++++|||+....+.++++.+.+||+++|++. +|+|+|+|++.. .++...+.
T Consensus 260 ~~~~~g~V~f~DG~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v~~Ly~~~f~~~~~p~LafiG~~~~~~~f~~~E~ 339 (461)
T PLN02172 260 TAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEI 339 (461)
T ss_pred ceecCCeEEECCCCCccCCEEEECCcCCccccccCcccceeeCCCcchhhHHhhcCCCCCCcEEEEeccccccCchhHHH
Confidence 77554 4999999999999999999999999999865557777777889999999997 699999999852 33333338
Q ss_pred ceeeehhhcccccccccccccccceecCCCcccchhhhhcccccc
Q psy12350 388 GIKVVNKNVQPLYKHLINIEHPSMCIIGIPVESCGIKVVNKNVQP 432 (1129)
Q Consensus 388 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 432 (1129)
|| +|+++.++|++.| |++++|++++..+...
T Consensus 340 Qa----~~~a~v~sG~~~L----------Ps~~~m~~~~~~~~~~ 370 (461)
T PLN02172 340 QS----KWVAAVLSGRVTL----------PSEDKMMEDINAWYAS 370 (461)
T ss_pred HH----HHHHHHHcCCCCC----------cCHHHHHHHHHHHHHH
Confidence 85 5555666788888 9999999999777643
No 5
>KOG1399|consensus
Probab=100.00 E-value=5.8e-44 Score=404.68 Aligned_cols=337 Identities=29% Similarity=0.488 Sum_probs=268.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|||||||||||++|+.|++ .|++++||||.+++||+|.|.+..+. .++++|++|++|+|++.|+|+||
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~------~~ss~Y~~l~tn~pKe~~~~~df 76 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEV------VHSSVYKSLRTNLPKEMMGYSDF 76 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccc------cccchhhhhhccCChhhhcCCCC
Confidence 35899999999999999999999 56999999999999999999776552 36789999999999999999999
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
|+++.....||++.++++||++||++|+|.+.|+|+++|..++... .+.|.+..++.... .....|| +|+||
T Consensus 77 pf~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~--~gkW~V~~~~~~~~-~~~~ifd-----~VvVc 148 (448)
T KOG1399|consen 77 PFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSID--KGKWRVTTKDNGTQ-IEEEIFD-----AVVVC 148 (448)
T ss_pred CCcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeecc--CCceeEEEecCCcc-eeEEEee-----EEEEc
Confidence 9998755567999999999999999999999999999998887632 15798888764433 4567899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|||+..|++|.+||...+.|+|+ -+|++.| +.++.|.
T Consensus 149 tGh~~~P~~P~~~g~~~~~f~G~-------------~iHS~~Y---------------------------k~~e~f~--- 185 (448)
T KOG1399|consen 149 TGHYVEPRIPQIPGPGIESFKGK-------------IIHSHDY---------------------------KSPEKFR--- 185 (448)
T ss_pred ccCcCCCCCCcCCCCchhhcCCc-------------ceehhhc---------------------------cCccccc---
Confidence 99997799999987545556554 3445444 7777775
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEcccc--CCc-ccccCCCCeEEcCCceEEcCCceEE-cCCC
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHS--EHV-KKLRFPNNVVKKPDIAELTPTGVRF-QDGS 323 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~--~~~-~~~~~~~~i~~~~~v~~~~~~~v~~-~dg~ 323 (1129)
+|+|+| ||+|+||+|+|.+++..+++|+++.++ ... .......++...+.|.++++++.+| .++.
T Consensus 186 ~k~VlV-----------IG~g~SG~DIs~d~~~~ak~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~e~~~~~~~~~~ 254 (448)
T KOG1399|consen 186 DKVVLV-----------VGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEILGENLWQVPSIKSFTEDGSVFEKGGP 254 (448)
T ss_pred CceEEE-----------ECCCccHHHHHHHHHHhccCcceeeecccccccccceeecceEEccccccccCcceEEEcCce
Confidence 455555 799999999999999999999999761 111 1112234555555599999998555 5556
Q ss_pred EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCC-CCCeEEecccc---cccccccccceeeehhhcccc
Q psy12350 324 YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIE-HPSMCIIGYTY---RYPFLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 324 ~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~-~p~l~~~G~~~---~~~~~~~~~~~~~~a~~~~~~ 399 (1129)
...+|.||+||||.+.+|||....++...++.+.++|+++|++. .|++.++|++. .+|.++ .|+ +|..+.
T Consensus 255 ~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~~~~~~~~~~~l~~~~~~f~~~e--~Q~----r~~~~v 328 (448)
T KOG1399|consen 255 VERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPPALAPGLSLAGLPLIQIPFPMFE--LQA----RWVAAV 328 (448)
T ss_pred eEEeeeEEEeeeeEeecceeccCCceeeccCcccchheeccchhhCccccccccCeeeEeeccee--hhh----hhhHhh
Confidence 67999999999999999999976655667778899999999865 56777777664 245555 775 566667
Q ss_pred cccccccccccceecCCCcccchhhhhcccc
Q psy12350 400 YKHLINIEHPSMCIIGIPVESCGIKVVNKNV 430 (1129)
Q Consensus 400 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 430 (1129)
+.|..++ |++++|+.|+..+.
T Consensus 329 ~~G~~~l----------ps~~~m~~d~~~~~ 349 (448)
T KOG1399|consen 329 LEGRLKL----------PSKDQMLEDGQEKY 349 (448)
T ss_pred hcCCCcC----------CCHHHhhhhhhhhh
Confidence 7777777 99999999886665
No 6
>KOG1399|consensus
Probab=100.00 E-value=8.4e-40 Score=370.78 Aligned_cols=349 Identities=30% Similarity=0.472 Sum_probs=279.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
.-.++|||||++||++|+.|+++| ++++||||.+++||+|.+..... ..++++|+++++|++++.|+|+|||
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~g--~~v~vfEr~~~iGGlW~y~~~~~------~~~ss~Y~~l~tn~pKe~~~~~dfp 77 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLREG--HEVVVFERTDDIGGLWKYTENVE------VVHSSVYKSLRTNLPKEMMGYSDFP 77 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHCC--CCceEEEecCCccceEeecCccc------ccccchhhhhhccCChhhhcCCCCC
Confidence 456799999999999999999999 99999999999999999876544 2377899999999999999999999
Q ss_pred CCCCCCCCCCChhhhhh--------------------------------------------------------ccCCCCC
Q psy12350 819 HKGNADKSYIGAKDVLE--------------------------------------------------------NYNHPIY 842 (1129)
Q Consensus 819 ~~~~~~~~~~~~~~v~~--------------------------------------------------------~~~~P~~ 842 (1129)
++++....|+++.++++ ++..|++
T Consensus 78 f~~~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~ 157 (448)
T KOG1399|consen 78 FPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRI 157 (448)
T ss_pred CcccCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCC
Confidence 99973444577777776 4445999
Q ss_pred CCCCC--CCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEE
Q psy12350 843 PEFKG--KDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFL 920 (1129)
Q Consensus 843 P~i~G--~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~ 920 (1129)
|.++| ++.|+|+++||++|+.++.+++|+|+|||+|+||+|||.+++..+++|++..+ . ...
T Consensus 158 P~~~g~~~~~f~G~~iHS~~Yk~~e~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~---------------~~~ 221 (448)
T KOG1399|consen 158 PQIPGPGIESFKGKIIHSHDYKSPEKFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-S---------------PKV 221 (448)
T ss_pred CcCCCCchhhcCCcceehhhccCcccccCceEEEECCCccHHHHHHHHHHhccCcceeee-c---------------ccc
Confidence 99999 77999999999999999999999999999999999999999999988887642 0 000
Q ss_pred ecCCccccccCCCCCeEEcCCeeEEeCCcEE-ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeec
Q psy12350 921 SHHSERVTSLCLPNNVVLKPDVAELTPTGVR-FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINI 999 (1129)
Q Consensus 921 ~~~~~~~~~~~~~~~V~~~~~i~~v~~~~V~-~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~ 999 (1129)
.. .....+..++..++.|+.+++++.. +.+|....+|.||+||||...+|||+........++...++|++++++
T Consensus 222 ~~----~~~~~~~~~~~~~~~i~~~~e~~~~~~~~~~~~~~D~ii~ctgy~y~fPfl~~~~~~~~~~~~~~pl~k~~~p~ 297 (448)
T KOG1399|consen 222 HV----EPPEILGENLWQVPSIKSFTEDGSVFEKGGPVERVDRIIFCTGYKYKFPFLETLGLGTVRDNIVGPLYKKVFPP 297 (448)
T ss_pred cc----cccceeecceEEccccccccCcceEEEcCceeEEeeeEEEeeeeEeecceeccCCceeeccCcccchheeccch
Confidence 00 0001112245555568999999855 456666799999999999999999986443345555656899999987
Q ss_pred CC-CCcEEEccccccchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhcCCC-CCCceeccC-CcHHHHHH
Q psy12350 1000 EH-PTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQN-PNTFHIIGH-RSENFLNS 1076 (1129)
Q Consensus 1000 ~~-p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~y~d~ 1076 (1129)
.. |.+.++|.+.....|+.+|.|++|++++++|+.++|+.++|..+...........+.. .++.|.+.. ....|...
T Consensus 298 ~~~~~~~~~~l~~~~~~f~~~e~Q~r~~~~v~~G~~~lps~~~m~~d~~~~~~~~~~~~~~~~~~t~~~~~~~l~~y~~~ 377 (448)
T KOG1399|consen 298 ALAPGLSLAGLPLIQIPFPMFELQARWVAAVLEGRLKLPSKDQMLEDGQEKYEKLDAVGLATGRHTHVPDYDELAEYINW 377 (448)
T ss_pred hhCccccccccCeeeEeecceehhhhhhHhhhcCCCcCCCHHHhhhhhhhhhhhhhhhcccccccccccchHHHHHHhhh
Confidence 74 6778888877668899999999999999999999999999999988876555555444 455554332 46778888
Q ss_pred HHHhcCCCCCCcHHHHHHHHchhhhhhhcCCCCCCCceeecCCCceeee
Q psy12350 1077 IISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYVRT 1125 (1129)
Q Consensus 1077 l~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~y~~~~Yr~~~~~~~~~~ 1125 (1129)
+++..|++ .++.|+. +.-++++++++.|++.+++.|+..
T Consensus 378 ~~~~~g~~-~~~~~~~---------~~~~~g~~~~y~~~~~~~~~w~g~ 416 (448)
T KOG1399|consen 378 FADLCGFP-KTEPWLA---------KEGWKGPCGLYAYGLTGPDKWDGA 416 (448)
T ss_pred hhhhcCCC-CcchHHh---------hhhccCccceeEeecccCcccccH
Confidence 88888887 5555443 335778999999999999999875
No 7
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.94 E-value=4.2e-26 Score=264.92 Aligned_cols=204 Identities=22% Similarity=0.383 Sum_probs=162.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
....+|+|||||+|||++|.+|+++|... ++||||++.+||+|.+ .+|+++++++++..++|+.
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~-~~i~Ek~~~~Gg~W~~---------------~ry~~l~~~~p~~~~~~~~ 69 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPD-FVIFEKRDDVGGTWRY---------------NRYPGLRLDSPKWLLGFPF 69 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCc-EEEEEccCCcCCcchh---------------ccCCceEECCchheeccCC
Confidence 34689999999999999999999965432 8999999999999995 5899999999999999999
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
+|++ +...++...++.+|+.+|++++++..+|++++.|+.++... ....|+|++...... . +.+| +||+
T Consensus 70 ~p~~--~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~-~~~~w~V~~~~~~~~--~-~~a~-----~vV~ 138 (443)
T COG2072 70 LPFR--WDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDE-DTKRWTVTTSDGGTG--E-LTAD-----FVVV 138 (443)
T ss_pred CccC--CcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecC-CCCeEEEEEcCCCee--e-EecC-----EEEE
Confidence 9987 34567788889999999999999999999999998876532 223566655432221 2 5678 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
|||+++.|++|+|+|.. .|.| +-.|++.| .+++++.
T Consensus 139 ATG~~~~P~iP~~~G~~--~f~g-------------~~~HS~~~---------------------------~~~~~~~-- 174 (443)
T COG2072 139 ATGHLSEPYIPDFAGLD--EFKG-------------RILHSADW---------------------------PNPEDLR-- 174 (443)
T ss_pred eecCCCCCCCCCCCCcc--CCCc-------------eEEchhcC---------------------------CCccccC--
Confidence 99999999999998732 3333 23344433 5555553
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCC
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEH 293 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~ 293 (1129)
+|+|+| ||+|.||+|+|.+|++.|++||++.|++.
T Consensus 175 -GKrV~V-----------IG~GaSA~di~~~l~~~ga~vt~~qRs~~ 209 (443)
T COG2072 175 -GKRVLV-----------IGAGASAVDIAPELAEVGASVTLSQRSPP 209 (443)
T ss_pred -CCeEEE-----------ECCCccHHHHHHHHHhcCCeeEEEecCCC
Confidence 666665 79999999999999999999999999884
No 8
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=99.93 E-value=1.2e-25 Score=261.19 Aligned_cols=277 Identities=23% Similarity=0.373 Sum_probs=189.2
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcc-eEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFT-CTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCG 816 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~-v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~ 816 (1129)
...+++|||||++||++|+.|+++| .+ ++||||++.+||+|++++ |++++.+.++....|+.
T Consensus 7 ~~~~v~IIGaG~sGlaaa~~L~~~g--~~~~~i~Ek~~~~Gg~W~~~r---------------y~~l~~~~p~~~~~~~~ 69 (443)
T COG2072 7 THTDVAIIGAGQSGLAAAYALKQAG--VPDFVIFEKRDDVGGTWRYNR---------------YPGLRLDSPKWLLGFPF 69 (443)
T ss_pred CcccEEEECCCHHHHHHHHHHHHcC--CCcEEEEEccCCcCCcchhcc---------------CCceEECCchheeccCC
Confidence 3457899999999999999999999 66 999999999999999764 55566677777778888
Q ss_pred CCCC-CCCCCCCCC-hhhhhh---------------------------------------------------ccCCCCCC
Q psy12350 817 YGHK-GNADKSYIG-AKDVLE---------------------------------------------------NYNHPIYP 843 (1129)
Q Consensus 817 ~~~~-~~~~~~~~~-~~~v~~---------------------------------------------------~~~~P~~P 843 (1129)
+|++ ....+.+.. ...+.. +++.|++|
T Consensus 70 ~p~~~~~~~~~~~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP 149 (443)
T COG2072 70 LPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIP 149 (443)
T ss_pred CccCCcccCCCcccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCC
Confidence 7775 111222221 111111 67899999
Q ss_pred CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCc-cch---------hhhhc
Q psy12350 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGL-DIT---------LDIAT 913 (1129)
Q Consensus 844 ~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~-~~~---------~~~~~ 913 (1129)
+|+|.++|+|+++||++|+++++++||+|+|||+|+||+|+|.+|++.|++||++.|++... +.. ..+..
T Consensus 150 ~~~G~~~f~g~~~HS~~~~~~~~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~~~~~~~~~~~~~~~~~~~~ 229 (443)
T COG2072 150 DFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRR 229 (443)
T ss_pred CCCCccCCCceEEchhcCCCccccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCceecccccccchHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999998865321 100 00000
Q ss_pred -c-----------c----------------------------cEEEEecCCccccc------------------cCCCCC
Q psy12350 914 -R-----------A----------------------------STVFLSHHSERVTS------------------LCLPNN 935 (1129)
Q Consensus 914 -~-----------~----------------------------~~~~~~~~~~~~~~------------------~~~~~~ 935 (1129)
. . .+..........+. .....+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~r~~~~~~~~~~~~~~~ 309 (443)
T COG2072 230 ALPAGWALRRGRVLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDLFEAGASGD 309 (443)
T ss_pred hCccceehhhhhhhhhhhhhhcccccCCCchHHHHHhhhhhhhccccccChHhhcCCCCCccccccccccchhhhhhhcc
Confidence 0 0 00000000000000 000113
Q ss_pred eEEcCC-eeEEeCCcEEecCCcEeeccEEEEccCccC-cCCCCCCCCC-eeecCCcccccccceeecCCCCcEEEccccc
Q psy12350 936 VVLKPD-VAELTPTGVRFQDGSYEQVDIILCCTGYSN-HYPFLHESCG-IKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012 (1129)
Q Consensus 936 V~~~~~-i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~-~~~fl~~~~g-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~ 1012 (1129)
+.+++. +..+.+.++...+|.+++.|.++.+||+.. .+..+....+ ...+. .....|+.....+.||+++++.+..
T Consensus 310 ~~~~~~~i~~~~~~~~~~~~~~~~e~d~i~~~tg~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~pn~~~~~~~~~ 388 (443)
T COG2072 310 VEVVTEIIDRFTEGGILLDSGREEEADVIITATGLDANDLSGAAGGYGGDPWDK-DAPLAYKGLALSGGPNLFLIGGPTK 388 (443)
T ss_pred cceeeccccccCCcceecCCCccccceEEEecCCCchhheeeeccccccccccc-cccceeccccccCCCceEEecCccC
Confidence 344444 455555667777777799999999999988 4443332221 12121 2224677777889999999998865
Q ss_pred cc----hhHHHHHHHHHHHHHHcC
Q psy12350 1013 TL----LFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 1013 ~~----~~~~~e~qa~~~a~~l~g 1032 (1129)
.. .....+.+.++++..+.-
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~ 412 (443)
T COG2072 389 ASGGLKAALRAELRITLLADAIAH 412 (443)
T ss_pred CcccchhHHhhhhhhhHHHHHHHh
Confidence 42 346777788887777653
No 9
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.92 E-value=1.2e-24 Score=248.73 Aligned_cols=306 Identities=14% Similarity=0.184 Sum_probs=199.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||..||.++++ .|.+|+++|+...+||+|.+ .||. |.+...+........+..-. +|
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~~lGGtCln---~GCI----PsK~Ll~~a~~~~~~~~~~~--~~ 71 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLGGTCLN---VGCI----PSKALLHAAEVIEEARHAAK--EY 71 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecCCcCceEEe---eCcc----ccHHHHHHHHHHHHHhhccc--cc
Confidence 35899999999999999999999 55669999998789999994 5552 44544444322211111100 12
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.+... ..-.+..++.+..++..+.......-.+ ...|+-+...+...+..++.+... +.....++ ++||
T Consensus 72 Gi~~~--~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~---~~~~~~a~-----~iiI 141 (454)
T COG1249 72 GISAE--VPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGE---DKETITAD-----NIII 141 (454)
T ss_pred ceecC--CCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCC---CceEEEeC-----EEEE
Confidence 11111 0123555666665554333321111111 125555555444455566666543 34556677 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| ++|..|++|+.....+ ..+.+.+...
T Consensus 142 ATG--S~p~~~~~~~~~~~~~-------------------------------------------------~~s~~~l~~~ 170 (454)
T COG1249 142 ATG--SRPRIPPGPGIDGARI-------------------------------------------------LDSSDALFLL 170 (454)
T ss_pred cCC--CCCcCCCCCCCCCCeE-------------------------------------------------Eechhhcccc
Confidence 999 9999998766221110 0112222212
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEE
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAEL 312 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~ 312 (1129)
..++.++| ||||++|+|+|..++++|.+||+++|.+++++..+++ ++..++.++++
T Consensus 171 ~lP~~lvI----------iGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~ 240 (454)
T COG1249 171 ELPKSLVI----------VGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEKGGVKILLNTKVTAV 240 (454)
T ss_pred cCCCEEEE----------ECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEE
Confidence 23444444 8999999999999999999999999999999865543 35567777777
Q ss_pred cCC----ceEEcCCC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc----ccc
Q psy12350 313 TPT----GVRFQDGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY----RYP 381 (1129)
Q Consensus 313 ~~~----~v~~~dg~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~----~~~ 381 (1129)
+.+ .+.+++|+ ++++|.|++|+|-+|+.+-|. +..++.+++++.+... +.+-.+.|++|.+|... .++
T Consensus 241 ~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp~IyA~GDV~~~~~Lah 319 (454)
T COG1249 241 EKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVPGIYAIGDVIGGPMLAH 319 (454)
T ss_pred EecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCCCEEEeeccCCCcccHh
Confidence 643 26777877 689999999999999998432 3567888776544444 33335689999999883 334
Q ss_pred ccccccceeeehhhccc
Q psy12350 382 FLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~~ 398 (1129)
.+. .|++.+|.++.+
T Consensus 320 ~A~--~eg~iaa~~i~g 334 (454)
T COG1249 320 VAM--AEGRIAAENIAG 334 (454)
T ss_pred HHH--HHHHHHHHHHhC
Confidence 455 888888888887
No 10
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.91 E-value=2.5e-24 Score=239.12 Aligned_cols=293 Identities=18% Similarity=0.244 Sum_probs=198.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+++|||||||++||.+|+.|.+...+.+|+++||++. .++...+|+.....++.
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~-----------------hl~~plL~eva~g~l~~--------- 56 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDY-----------------HLFTPLLYEVATGTLSE--------- 56 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCc-----------------cccchhhhhhhcCCCCh---------
Confidence 4799999999999999999998522588999999773 11222333332222222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+++.--++..+++.+ ++.| .-+|+.|+. +.++|.+.+ .....|| +||||
T Consensus 57 ------------~~i~~p~~~~~~~~~---~v~~~~~~V~~ID~-----~~k~V~~~~-----~~~i~YD-----~LVva 106 (405)
T COG1252 57 ------------SEIAIPLRALLRKSG---NVQFVQGEVTDIDR-----DAKKVTLAD-----LGEISYD-----YLVVA 106 (405)
T ss_pred ------------hheeccHHHHhcccC---ceEEEEEEEEEEcc-----cCCEEEeCC-----Ccccccc-----EEEEe
Confidence 122222333344332 2333 346888876 556665543 3457899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
+| +.++.+.+||..+..+.- .+.++|..++.+.... |+++....++ ..
T Consensus 107 lG--s~~~~fgi~G~~E~a~~l----ks~edA~~ir~~l~~~-----------------------fe~a~~~~~~---~~ 154 (405)
T COG1252 107 LG--SETNYFGIPGAAEYAFGL----KTLEDALRLRRHLLEA-----------------------FEKASQEEDD---RA 154 (405)
T ss_pred cC--CcCCcCCCCCHHHhCCCC----CCHHHHHHHHHHHHHH-----------------------HHHhhccccc---cc
Confidence 99 999999999865544332 2444554444433211 1211111111 01
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccccc-------------EEEEccccCCcccccCCC-------------
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-------------TVFLSHHSEHVKKLRFPN------------- 301 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-------------~V~lv~r~~~~~~~~~~~------------- 301 (1129)
..+++| ||||++|+|+|.+|++... +|+|+++.+.+++...+.
T Consensus 155 ~lti~I-----------vGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~G 223 (405)
T COG1252 155 LLTIVI-----------VGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLG 223 (405)
T ss_pred eeEEEE-----------ECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCC
Confidence 123333 8999999999999887654 899999999998854432
Q ss_pred -CeEEcCCceEEcCCceEEcCCCE-eecCEEEEcccccccCCCCC--------CCCCeEeecCcccccccccccCCCCCe
Q psy12350 302 -NVVKKPDIAELTPTGVRFQDGSY-EQVDIILYCTGYTYRYPFLH--------ESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 302 -~i~~~~~v~~~~~~~v~~~dg~~-~~~D~VI~atG~~~~~~~l~--------~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
+|.+++.|+++++++|++++|.+ +++|+||||+|.+.+ |++. ...++.++++...+.|.++|..+|...
T Consensus 224 V~v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~ 302 (405)
T COG1252 224 VEVLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAA 302 (405)
T ss_pred CEEEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEecccc
Confidence 67889999999999999999985 999999999999987 3322 225677777777788888888887433
Q ss_pred EEec--ccccccccccccceeeehhhcccccccc
Q psy12350 372 CIIG--YTYRYPFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 372 ~~~G--~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
+.-. .|.++|.+. |||+++|.++.+.+.|+
T Consensus 303 ~~~~~p~P~tAQ~A~--Qqg~~~a~ni~~~l~g~ 334 (405)
T COG1252 303 VIDPRPVPPTAQAAH--QQGEYAAKNIKARLKGK 334 (405)
T ss_pred CCCCCCCCChhHHHH--HHHHHHHHHHHHHhcCC
Confidence 3332 467788888 99999999999999884
No 11
>PLN02507 glutathione reductase
Probab=99.89 E-value=3e-23 Score=246.23 Aligned_cols=305 Identities=18% Similarity=0.157 Sum_probs=181.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcc---------cCCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ---------TDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~---------~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
.+||+||||||||++||+++++ .|.+|+|+|+ .+.+||+|.+ .||. |.+...|..-.....+
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~~~~~~~~~~~~~~GGtc~n---~Gci----PsK~l~~~a~~~~~~~ 95 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSESIGGVGGTCVI---RGCV----PKKILVYGATFGGEFE 95 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcccccccCCCccceeec---cCch----hHHHHHHHHHHHHHHH
Confidence 4789999999999999999999 6799999996 3679999984 4542 3333333321111111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCC-cceeEeceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNL-RNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~-~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.. ..|.+... ...-.+..++.++++...+++.- ......+..|+-+.......+..++.+.. ..++...+.||
T Consensus 96 ~~---~~~G~~~~-~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~-~~g~~~~~~~d- 169 (499)
T PLN02507 96 DA---KNYGWEIN-EKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQ-LDGTKLRYTAK- 169 (499)
T ss_pred HH---HhcCcccC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEe-CCCcEEEEEcC-
Confidence 11 11111100 01123555656555444443310 01111122232222211112333444432 22222346788
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+|||||| +.|..|++||... .. .+.. + .
T Consensus 170 ----~LIIATG--s~p~~p~ipG~~~-~~------------------~~~~--------------------------~-~ 197 (499)
T PLN02507 170 ----HILIATG--SRAQRPNIPGKEL-AI------------------TSDE--------------------------A-L 197 (499)
T ss_pred ----EEEEecC--CCCCCCCCCCccc-ee------------------chHH--------------------------h-h
Confidence 9999999 8888888876210 00 0000 0 0
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~ 304 (1129)
..+.+ .++++| ||||++|+|+|..++..|++|+|++|.+.+++...+ -++.
T Consensus 198 ~l~~~----~k~vvV-----------IGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~ 262 (499)
T PLN02507 198 SLEEL----PKRAVV-----------LGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARNLEGRGINLH 262 (499)
T ss_pred hhhhc----CCeEEE-----------ECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHHHHhCCCEEE
Confidence 00011 233333 899999999999999999999999998866543221 1456
Q ss_pred EcCCceEEcC--Cc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 305 KKPDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 305 ~~~~v~~~~~--~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
.+..|+++++ ++ +.+.+|+++++|.||+|+|++++..+|. +..++..+++..+....++- ++.|++|.+|....
T Consensus 263 ~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~-Ts~p~IyAiGDv~~ 341 (499)
T PLN02507 263 PRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSR-TNIPSIWAIGDVTN 341 (499)
T ss_pred eCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCc-CCCCCEEEeeEcCC
Confidence 6777888863 23 5667888899999999999999998753 34566666544333333322 58899999998753
Q ss_pred ----ccccccccceeeehhhccc
Q psy12350 380 ----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 380 ----~~~~~~~~~~~~~a~~~~~ 398 (1129)
++.+. .|++.+|.++.+
T Consensus 342 ~~~l~~~A~--~qg~~aa~ni~g 362 (499)
T PLN02507 342 RINLTPVAL--MEGTCFAKTVFG 362 (499)
T ss_pred CCccHHHHH--HHHHHHHHHHcC
Confidence 34455 788888887653
No 12
>KOG0405|consensus
Probab=99.89 E-value=2e-22 Score=208.28 Aligned_cols=302 Identities=17% Similarity=0.216 Sum_probs=200.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+|..|||||.+|+++|+.+++ .|.++.|+|..-.+||+|.+ .||. |.+-..|.+ ..+.++..-.+|
T Consensus 19 k~fDylvIGgGSGGvasARrAa~--~GAkv~l~E~~f~lGGTCVn---~GCV----PKKvm~~~a---~~~~~~~da~~y 86 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAAS--HGAKVALCELPFGLGGTCVN---VGCV----PKKVMWYAA---DYSEEMEDAKDY 86 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHh--cCceEEEEecCCCcCceEEe---eccc----cceeEEehh---hhhHHhhhhhhc
Confidence 35899999999999999999999 77999999997689999993 4542 223233332 223333344455
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcC-CcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFN-LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.|+.... .-.++..+.+....|..+++ +.++..-+..|.-++.++...+..+++++..+ + ....|.++ +++|
T Consensus 87 G~~~~~~-~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d-~--~~~~Ytak---~iLI 159 (478)
T KOG0405|consen 87 GFPINEE-GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVND-G--TKIVYTAK---HILI 159 (478)
T ss_pred CCccccc-cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecC-C--eeEEEecc---eEEE
Confidence 5554212 22366677776677777764 55566667777777765555555656654322 2 13446554 8999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| ++|.+|+|||... ++ .+...|...
T Consensus 160 AtG--g~p~~PnIpG~E~---------------------------------------------gi------dSDgff~Le 186 (478)
T KOG0405|consen 160 ATG--GRPIIPNIPGAEL---------------------------------------------GI------DSDGFFDLE 186 (478)
T ss_pred EeC--CccCCCCCCchhh---------------------------------------------cc------ccccccchh
Confidence 999 9999999988320 00 111222222
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEE
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAEL 312 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~ 312 (1129)
..++.++| ||+|++|+|+|..++.+|.++.+..|.+..+...++. +++..+.++++
T Consensus 187 e~Pkr~vv----------vGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v 256 (478)
T KOG0405|consen 187 EQPKRVVV----------VGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKV 256 (478)
T ss_pred hcCceEEE----------EccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcceeecccccceee
Confidence 23334443 8999999999999999999999999998776543321 45556677766
Q ss_pred cCC--c---eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCc--ccccccccccCCCCCeEEecccc----cc
Q psy12350 313 TPT--G---VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN--VQPLYKHLINIEHPSMCIIGYTY----RY 380 (1129)
Q Consensus 313 ~~~--~---v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~--~~~l~~~~~~~~~p~l~~~G~~~----~~ 380 (1129)
... + +..+.|+...+|.++||+|-.|+.--|. +..+++.+.+. .++-|++ ++.|+++.+|... ..
T Consensus 257 ~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDeYq~---Tnvp~I~avGDv~gk~~LT 333 (478)
T KOG0405|consen 257 IKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDEYQN---TNVPSIWAVGDVTGKINLT 333 (478)
T ss_pred eecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEecccc---CCCCceEEeccccCcEecc
Confidence 432 2 4445666567999999999999876554 24667777654 3567777 5889999999874 34
Q ss_pred cccccccceeeehhhc
Q psy12350 381 PFLHESCGIKVVNKNV 396 (1129)
Q Consensus 381 ~~~~~~~~~~~~a~~~ 396 (1129)
|.+. ..++..|.-+
T Consensus 334 PVAi--aagr~la~rl 347 (478)
T KOG0405|consen 334 PVAI--AAGRKLANRL 347 (478)
T ss_pred hHHH--hhhhhHHHHh
Confidence 7666 5554444433
No 13
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.89 E-value=1.3e-22 Score=238.92 Aligned_cols=288 Identities=18% Similarity=0.229 Sum_probs=174.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..|++ .|++|+|+|| +.+||+|.+ .+|. |.+...+..-.....+ ...+|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~-~~~GG~c~~---~gci----Psk~l~~~a~~~~~~~---~~~~~g 68 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEA-KKLGGTCVN---VGCV----PKKVMWYASDLAERMH---DAADYG 68 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEecc-cccccceec---cCcC----ccHHHHHHHHHHHHHh---HHhhcC
Confidence 4899999999999999999999 6699999999 569999994 4442 2221111111111111 111121
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHH-----------HhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFA-----------DNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++.. .....+..++.++.+++. ++.++ .++.++.+. . +..++.+ + ...+.||
T Consensus 69 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~~~~-~-------~~~~v~v----~--~~~~~~d 131 (450)
T TIGR01421 69 FYQN-LENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKV--DVIFGHARF-T-------KDGTVEV----N--GRDYTAP 131 (450)
T ss_pred cccC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-c-------cCCEEEE----C--CEEEEeC
Confidence 1110 000123344444433322 22333 555555432 1 1223322 1 1346788
Q ss_pred ceeeeEEEEecccCCCCCcc-ccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKA-EMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p-~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+|||||| +.|..| ++||... . ..+.. +
T Consensus 132 -----~vIiAtG--s~p~~p~~i~g~~~-~------------------~~~~~--------------------------~ 159 (450)
T TIGR01421 132 -----HILIATG--GKPSFPENIPGAEL-G------------------TDSDG--------------------------F 159 (450)
T ss_pred -----EEEEecC--CCCCCCCCCCCCce-e------------------EcHHH--------------------------h
Confidence 9999999 888888 7876210 0 00000 0
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------C
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------N 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~ 302 (1129)
+. .+.. .++++ | ||||++|+|+|..|+..|++||+++|.+.+++..++. +
T Consensus 160 ~~-~~~~----~~~vv-------I----IGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~ 223 (450)
T TIGR01421 160 FA-LEEL----PKRVV-------I----VGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGIN 223 (450)
T ss_pred hC-cccc----CCeEE-------E----ECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCE
Confidence 00 0001 13333 3 8999999999999999999999999998776543221 3
Q ss_pred eEEcCCceEEcCC-----ceEEcCC-CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 303 VVKKPDIAELTPT-----GVRFQDG-SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 303 i~~~~~v~~~~~~-----~v~~~dg-~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
+..+..|++++++ .+++++| +++++|.||+|+|++++..+|. +..++..+++..+...++ +.++.|++|.+|
T Consensus 224 i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~T~~p~IyAiG 302 (450)
T TIGR01421 224 VHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-QNTNVPGIYALG 302 (450)
T ss_pred EEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-CcCCCCCEEEEE
Confidence 5556678888642 2667788 5689999999999999998653 345677765543333333 235789999999
Q ss_pred ccc----cccccccccceeeehhhcc
Q psy12350 376 YTY----RYPFLHESCGIKVVNKNVQ 397 (1129)
Q Consensus 376 ~~~----~~~~~~~~~~~~~~a~~~~ 397 (1129)
... .++.+. .||+.+|.++.
T Consensus 303 D~~~~~~~~~~A~--~~g~~aa~~i~ 326 (450)
T TIGR01421 303 DVVGKVELTPVAI--AAGRKLSERLF 326 (450)
T ss_pred ecCCCcccHHHHH--HHHHHHHHHHh
Confidence 864 234454 78777777765
No 14
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.89 E-value=9.5e-23 Score=240.19 Aligned_cols=309 Identities=14% Similarity=0.124 Sum_probs=185.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc--------CCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT--------DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~--------~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
+.+||+||||||+|++||..+++.+ |.+|+|+|+. +.+||+|. +.||. |.+...+..-.....+
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~-g~~V~lie~~~~~~~~~~~~~GGtCl---n~GCi----PsK~l~~~a~~~~~~~ 73 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLY-KKRVAVIDVQTHHGPPHYAALGGTCV---NVGCV----PKKLMVTGAQYMDTLR 73 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhc-CCEEEEEecccCccccccCCccCeec---CcCCc----cHHHHHHHHHHHHHHH
Confidence 3589999999999999999999931 6899999984 57999999 45552 3232222211111111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC--CcceeEeceeeeeeccccccCCCCceEEeccccC---ccceE
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFN--LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRD---TVGFY 154 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~---~~~~~ 154 (1129)
....|.+.......-....++.++.++..+... +...+.-+..|+-+...+...+..++.+.....+ ....+
T Consensus 74 ---~~~~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~ 150 (486)
T TIGR01423 74 ---ESAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERL 150 (486)
T ss_pred ---HhhccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEE
Confidence 111111100000112355566666655544431 1111111124554544444455666766532211 12457
Q ss_pred EecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccc
Q psy12350 155 LFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFE 234 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 234 (1129)
.|| +|||||| +.|..|++||... . .+. +
T Consensus 151 ~~d-----~lIIATG--s~p~~p~i~G~~~--~------------------~~~-------------------------~ 178 (486)
T TIGR01423 151 QAE-----HILLATG--SWPQMLGIPGIEH--C------------------ISS-------------------------N 178 (486)
T ss_pred ECC-----EEEEecC--CCCCCCCCCChhh--e------------------ech-------------------------h
Confidence 889 9999999 8899898876210 0 000 0
Q ss_pred cccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc---ccEEEEccccCCcccccCCC----------
Q psy12350 235 SFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE---ATTVFLSHHSEHVKKLRFPN---------- 301 (1129)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~---~~~V~lv~r~~~~~~~~~~~---------- 301 (1129)
.+.. +. ...++++| ||||++|+|+|..++.+ |.+|||+++.+.+++..+++
T Consensus 179 ~~~~----~~-~~~~~vvI-----------IGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~~~~~l~~~L~ 242 (486)
T TIGR01423 179 EAFY----LD-EPPRRVLT-----------VGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQLR 242 (486)
T ss_pred hhhc----cc-cCCCeEEE-----------ECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHHHHHHHHHHHH
Confidence 0000 00 01233333 89999999999876554 89999999998876543321
Q ss_pred ----CeEEcCCceEEcC--C---ceEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCe
Q psy12350 302 ----NVVKKPDIAELTP--T---GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 302 ----~i~~~~~v~~~~~--~---~v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
++..+..+++++. + .+.+.+|+++++|.||+|+|.+|+..++. +..++.++++..+....++- ++.|++
T Consensus 243 ~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~l~-Ts~~~I 321 (486)
T TIGR01423 243 ANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEFSR-TNVPNI 321 (486)
T ss_pred HcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCCCc-CCCCCE
Confidence 4556777888863 2 26677888899999999999999998764 34556666554333333322 578999
Q ss_pred EEeccccc----ccccccccceeeehhhccc
Q psy12350 372 CIIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 372 ~~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
|.+|.... ++.+. .|++.+|.++.+
T Consensus 322 yA~GDv~~~~~l~~~A~--~qG~~aa~ni~g 350 (486)
T TIGR01423 322 YAIGDVTDRVMLTPVAI--NEGAAFVDTVFG 350 (486)
T ss_pred EEeeecCCCcccHHHHH--HHHHHHHHHHhC
Confidence 99998743 34454 777777777753
No 15
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.88 E-value=2.4e-22 Score=229.97 Aligned_cols=270 Identities=20% Similarity=0.276 Sum_probs=186.7
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccc-ccc-
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLM-ELC- 815 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~-~~~- 815 (1129)
+..+++|||+||+|..+|.++.+.| .++.++|+.+.+||+|.. .|| +|.+..++.....+..+... .|.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~G--~kvalvE~~~~lGGtCln---~GC----IPsK~Ll~~a~~~~~~~~~~~~~Gi 73 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQLG--LKVALVEKGERLGGTCLN---VGC----IPSKALLHAAEVIEEARHAAKEYGI 73 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhCC--CCEEEEeecCCcCceEEe---eCc----cccHHHHHHHHHHHHHhhcccccce
Confidence 3467899999999999999999999 679999998889999994 477 34332222211111000000 000
Q ss_pred -----CCCC------------------------------------CCC-----CC---CCCCChhhhhhccCCCCCCCCC
Q psy12350 816 -----GYGH------------------------------------KGN-----AD---KSYIGAKDVLENYNHPIYPEFK 846 (1129)
Q Consensus 816 -----~~~~------------------------------------~~~-----~~---~~~~~~~~v~~~~~~P~~P~i~ 846 (1129)
.+.+ ... .. ..+....-++++|++|+.|+++
T Consensus 74 ~~~~~~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~ 153 (454)
T COG1249 74 SAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGP 153 (454)
T ss_pred ecCCCCcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCC
Confidence 0000 000 00 0011111222299999999999
Q ss_pred CCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCc
Q psy12350 847 GKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSE 925 (1129)
Q Consensus 847 G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 925 (1129)
|++. -.++.+.+...... .+|+++|||||.+|+|+|..+++.|.+||++++.+..++. +++..+...+.+..
T Consensus 154 ~~~~--~~~~~s~~~l~~~~-lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~~~~l~~---- 226 (454)
T COG1249 154 GIDG--ARILDSSDALFLLE-LPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQLEK---- 226 (454)
T ss_pred CCCC--CeEEechhhccccc-CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHHHHHHHh----
Confidence 9875 23566666444443 4799999999999999999999999999999999888773 44444433332222
Q ss_pred cccccCCCCCeEEcCC--eeEEeCC----cEEecCCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccce
Q psy12350 926 RVTSLCLPNNVVLKPD--VAELTPT----GVRFQDGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHT 996 (1129)
Q Consensus 926 ~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~ 996 (1129)
.++++..+ +++++.+ .+.+++|+ ++++|.|++|+|++||++-|. +..|+++++++...+. ..
T Consensus 227 --------~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~ 297 (454)
T COG1249 227 --------GGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQ 297 (454)
T ss_pred --------CCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-Cc
Confidence 14555544 6666543 26777877 689999999999999998654 4589999987665555 56
Q ss_pred eecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcC
Q psy12350 997 INIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g 1032 (1129)
+.++.||||++||+.... ..+.+..|++.++..+.|
T Consensus 298 ~~Tnvp~IyA~GDV~~~~~Lah~A~~eg~iaa~~i~g 334 (454)
T COG1249 298 MTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAAENIAG 334 (454)
T ss_pred cccCCCCEEEeeccCCCcccHhHHHHHHHHHHHHHhC
Confidence 677899999999996554 669999999999999986
No 16
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.88 E-value=1.5e-22 Score=237.94 Aligned_cols=263 Identities=20% Similarity=0.259 Sum_probs=168.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||+||++||+.|++.+++++|+|+|+++.++ |.+ +.++....+
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~----~~~--------------------~~lp~~~~~------ 51 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS----FAN--------------------CALPYYIGE------ 51 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc----ccc--------------------CCcchhhcC------
Confidence 48999999999999999999877789999999987543 100 001110000
Q ss_pred CCCCCCCCCCHHHHHHH-HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 90 KGHPDKSYIAANDVLEY-LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
......++..+ .+.+.++.++ .++++++|+.|+. +...+.+.+...++.....|| +|||||
T Consensus 52 ------~~~~~~~~~~~~~~~~~~~~~i--~v~~~~~V~~Id~-----~~~~v~~~~~~~~~~~~~~yd-----~lviAt 113 (438)
T PRK13512 52 ------VVEDRKYALAYTPEKFYDRKQI--TVKTYHEVIAIND-----ERQTVTVLNRKTNEQFEESYD-----KLILSP 113 (438)
T ss_pred ------ccCCHHHcccCCHHHHHHhCCC--EEEeCCEEEEEEC-----CCCEEEEEECCCCcEEeeecC-----EEEECC
Confidence 01111122222 1334455565 7888999999986 445565554322223345799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++++.. ...+....... ...+.+.....
T Consensus 114 G--s~~~~~~~~~~~---------------~~~~~~~~~~~----------------------------~l~~~l~~~~~ 148 (438)
T PRK13512 114 G--ASANSLGFESDI---------------TFTLRNLEDTD----------------------------AIDQFIKANQV 148 (438)
T ss_pred C--CCCCCCCCCCCC---------------eEEecCHHHHH----------------------------HHHHHHhhcCC
Confidence 9 888877653210 00000000000 00000000012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcC
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTP 314 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~ 314 (1129)
++++ | ||||++|+|+|..|++.|.+|+++++++.+++...++ ++..+..|+++++
T Consensus 149 ~~vv-------V----iGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~ 217 (438)
T PRK13512 149 DKAL-------V----VGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAING 217 (438)
T ss_pred CEEE-------E----ECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeC
Confidence 3333 3 8999999999999999999999999988765432221 4556788999988
Q ss_pred CceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 315 TGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 315 ~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..|++++|+++++|.||+|+|++++.++++ ..++.++++..+...+++- ++.|++|++|...
T Consensus 218 ~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~-~~gl~~~~~G~i~Vd~~~~-t~~~~IyA~GD~~ 279 (438)
T PRK13512 218 NEVTFKSGKVEHYDMIIEGVGTHPNSKFIE-SSNIKLDDKGFIPVNDKFE-TNVPNIYAIGDII 279 (438)
T ss_pred CEEEECCCCEEEeCEEEECcCCCcChHHHH-hcCcccCCCCcEEECCCcc-cCCCCEEEeeeeE
Confidence 789999999999999999999999999886 3556665544333333322 5789999999874
No 17
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.87 E-value=7.5e-22 Score=232.86 Aligned_cols=290 Identities=17% Similarity=0.190 Sum_probs=176.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..+++ .|++|+|+|+ +.+||+|.+ .||. |.+...+... .......++.|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~-~~~GG~c~~---~gci----Psk~l~~~a~---~~~~~~~~~~~g 68 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEE-PRVGGTCVI---RGCV----PKKLMVYGST---FGGEFEDAAGYG 68 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEec-CccCceeec---CCcC----chHHHHHHHH---HHHHHhhhHhcC
Confidence 4799999999999999999999 6699999999 579999994 4542 2222222211 111111122222
Q ss_pred CCCCCCCCCCCHHHH-----------HHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDV-----------LEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~-----------~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
.... ..-++..++ .++++...++.++ .+..+ ++..++. .++.+. . ....+.||
T Consensus 69 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g-~~~~v~~-------~~v~v~--~--~g~~~~~d 132 (446)
T TIGR01424 69 WTVG--KARFDWKKLLQKKDDEIARLSGLYKRLLANAGV--ELLEG-RARLVGP-------NTVEVL--Q--DGTTYTAK 132 (446)
T ss_pred cCCC--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEE-EEEEecC-------CEEEEe--c--CCeEEEcC
Confidence 1100 001122222 3333444444444 44433 4544433 223332 1 12356789
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|++||... .+ .+.. +.
T Consensus 133 -----~lIiATG--s~p~~p~i~G~~~-~~------------------~~~~--------------------------~~ 160 (446)
T TIGR01424 133 -----KILIAVG--GRPQKPNLPGHEL-GI------------------TSNE--------------------------AF 160 (446)
T ss_pred -----EEEEecC--CcCCCCCCCCccc-ee------------------chHH--------------------------hh
Confidence 9999999 8898888876210 00 0000 00
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
. +. ...++++ | ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -++
T Consensus 161 ~----l~-~~~~~vv-------V----IGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i 224 (446)
T TIGR01424 161 H----LP-TLPKSIL-------I----LGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRI 224 (446)
T ss_pred c----cc-ccCCeEE-------E----ECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEE
Confidence 0 00 0123333 3 899999999999999999999999998876543221 145
Q ss_pred EEcCCceEEcC--Cc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 304 VKKPDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 304 ~~~~~v~~~~~--~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..+..|+++++ ++ +.+.+|+++++|.||+|+|.+++...|. +..++..+++..+....++ -++.|++|++|...
T Consensus 225 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~ 303 (446)
T TIGR01424 225 HPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYS-RTSIPSIYAVGDVT 303 (446)
T ss_pred EeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCC-ccCCCCEEEeeccC
Confidence 55677888863 23 5667888899999999999999987642 3455666554433322222 25789999999875
Q ss_pred c----ccccccccceeeehhhccc
Q psy12350 379 R----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 379 ~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
. ++.+. .||+.+|.++.+
T Consensus 304 ~~~~l~~~A~--~~g~~~a~~i~~ 325 (446)
T TIGR01424 304 DRINLTPVAI--MEATCFANTEFG 325 (446)
T ss_pred CCccchhHHH--HHHHHHHHHHhc
Confidence 3 23344 777777777653
No 18
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.87 E-value=1.9e-21 Score=218.79 Aligned_cols=277 Identities=15% Similarity=0.173 Sum_probs=180.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+|||+||..|++ .+++|+|||+++ +||.|.... .+..++.++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~-~gg~~~~~~-------------------------~~~~~~~~~- 51 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGME-PGGQLTTTT-------------------------EVENYPGFP- 51 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccC-CCcceeecc-------------------------cccccCCCC-
Confidence 489999999999999999999 669999999975 888887310 111122221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
......++.++++++++++++ .+++ ++|+++++.. +.|.+.. . ....+.|| +||+|||
T Consensus 52 ------~~~~~~~~~~~l~~~~~~~gv--~~~~-~~v~~v~~~~---~~~~v~~---~--~~~~~~~d-----~liiAtG 109 (300)
T TIGR01292 52 ------EGISGPELMEKMKEQAVKFGA--EIIY-EEVIKVDLSD---RPFKVKT---G--DGKEYTAK-----AVIIATG 109 (300)
T ss_pred ------CCCChHHHHHHHHHHHHHcCC--eEEE-EEEEEEEecC---CeeEEEe---C--CCCEEEeC-----EEEECCC
Confidence 123456889999999999987 6777 7898887631 2233332 1 12457899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
..|+.|++||... +.+. +.+... . .... ...++
T Consensus 110 --~~~~~~~i~g~~~--~~~~-------------~~~~~~--------------------------~-~~~~---~~~~~ 142 (300)
T TIGR01292 110 --ASARKLGIPGEDE--FLGR-------------GVSYCA--------------------------T-CDGP---FFKNK 142 (300)
T ss_pred --CCcccCCCCChhh--cCCc-------------cEEEee--------------------------e-cChh---hcCCC
Confidence 6788787876321 1110 000000 0 0000 11234
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------c-C-CCCeEEcCCceEEcCCc----
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------R-F-PNNVVKKPDIAELTPTG---- 316 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~-~-~~~i~~~~~v~~~~~~~---- 316 (1129)
+++| ||+|.+|+|+|..|++.+++|++++|.+.+... . . .-++.....++++++++
T Consensus 143 ~v~V-----------iG~G~~~~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~~l~~~~gv~~~~~~~v~~i~~~~~~~~ 211 (300)
T TIGR01292 143 EVAV-----------VGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEKILLDRLRKNPNIEFLWNSTVKEIVGDNKVEG 211 (300)
T ss_pred EEEE-----------ECCChHHHHHHHHHHhhcCEEEEEEeCcccCcCHHHHHHHHhCCCeEEEeccEEEEEEccCcEEE
Confidence 4444 899999999999999999999999998754211 1 1 11344567788887553
Q ss_pred eEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc---cccccccc
Q psy12350 317 VRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY---PFLHESCG 388 (1129)
Q Consensus 317 v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~---~~~~~~~~ 388 (1129)
+.+. +| .++++|.||+|+|++++.+++... +..+++..+...++ +..+.|++|++|..... ....+..|
T Consensus 212 v~~~~~~~g~~~~i~~D~vi~a~G~~~~~~~l~~~--~~~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~ 288 (300)
T TIGR01292 212 VKIKNTVTGEEEELKVDGVFIAIGHEPNTELLKGL--LELDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGD 288 (300)
T ss_pred EEEEecCCCceEEEEccEEEEeeCCCCChHHHHHh--heecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhh
Confidence 4553 24 457999999999999999888743 44444443333333 33688999999987641 12333477
Q ss_pred eeeehhhccc
Q psy12350 389 IKVVNKNVQP 398 (1129)
Q Consensus 389 ~~~~a~~~~~ 398 (1129)
++.+|+++.+
T Consensus 289 g~~aa~~i~~ 298 (300)
T TIGR01292 289 GCIAALSAER 298 (300)
T ss_pred HHHHHHHHHh
Confidence 7777777654
No 19
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87 E-value=3.1e-23 Score=221.69 Aligned_cols=238 Identities=20% Similarity=0.223 Sum_probs=156.0
Q ss_pred cccccccCCCCCcCcCCCChHHHHHHHH---hcccceecCCCCCcceecccCCCC---------CcceEEEEEEcccCCC
Q psy12350 433 LYKHLINIDHPSMCIIGIPGDTVVFYMF---DLQDKIRPGRGNPRPSACEADALP---------TNLTRLTYIISSRNYS 500 (1129)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~e~~~y~~---~~~~~i~~~~~~~~v~~~~~~~~~---------~~~~~~~~v~atG~~~ 500 (1129)
|++|.+.++|.+...++|+|.||.+||+ +..+.++|+.+|++|..++++... +.+.++++||++| .
T Consensus 78 L~~h~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G--~ 155 (436)
T COG3486 78 LHEHGRLYEFLNYETFHIPRREYNDYCQWAASQLPSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVG--T 155 (436)
T ss_pred HHHcchHhhhhhhhcccccHHHHHHHHHHHHhhCCccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccC--C
Confidence 5688899999999999999999999999 333889998888888677776432 1334577999999 8
Q ss_pred CCCCCC-CCCCCCcCCcEEecCCCC-CCCCCCCCe-EEEEccCcchhhhHHHhhcc----cCeEEEEEEecceeeecccc
Q psy12350 501 NPVYPD-FKGKDVCQIPIMHSHEYR-TPEPFAGKR-AVVVGSGPSGLDITHDISTE----ATTVSAYLRFDNKTITKRKK 573 (1129)
Q Consensus 501 ~p~~p~-~~g~~~f~g~v~hs~~~~-~~~~~~~k~-v~ViG~g~sa~~~~~~l~~~----~~~v~~~~r~~~~~~~~~~~ 573 (1129)
+|++|+ +..+. .+++|||++|. +..++.+|+ |+|||+||||+|++.+|... ..++.|++|++++ .+
T Consensus 156 ~P~IP~~f~~l~--~~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf-----~p 228 (436)
T COG3486 156 QPYIPPCFRSLI--GERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGF-----LP 228 (436)
T ss_pred CcCCChHHhCcC--ccceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCC-----Cc
Confidence 999996 44443 24899999997 456677777 99999999999999999743 4579999999988 44
Q ss_pred ccCCCCCCCCCCcccccccccccceeeeecccCCCccCCccEEEEccccccccc-----cccccccCcEEEEecCCcchh
Q psy12350 574 FDKGRNYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDI-----TLDIATRASTVFLSHHSERVT 648 (1129)
Q Consensus 574 ~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 648 (1129)
++.+++.++.|.|++. ..+|.++...+.+.+...+...+|+.. +++..... + ..
T Consensus 229 ~d~Skf~~e~F~P~y~-----------dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~-~--l~------- 287 (436)
T COG3486 229 MDYSKFGLEYFSPEYT-----------DYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQ-S--LG------- 287 (436)
T ss_pred cccchhhhhhcCchhH-----------HHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHH-H--hc-------
Confidence 4556666666666653 444556655443333333322222221 11111100 0 00
Q ss_pred cccCCCcEEe-cCCceEEeCCc---EEE-------cCCcEEeccEEEEccCCCCCCcccccccC
Q psy12350 649 SLCLPNNVVL-KPDVAELTPTG---VRF-------QDGSYEQVDIILCCTGYTNHYPFLHESCG 701 (1129)
Q Consensus 649 ~l~~~~~~~v-~~~I~~it~~g---V~~-------~dG~~~~~D~VVlATGy~~~~~~l~~~l~ 701 (1129)
-..+++.+. ...+..++..| +.+ ...+++++|+||+||||+...|.|.+.+.
T Consensus 288 -~~~~~v~l~~~~ev~~~~~~G~g~~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~ 350 (436)
T COG3486 288 -GRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRRAVPSFLEGLA 350 (436)
T ss_pred -CCCCCeeeccccceeeeecCCCceEEEEEeeccCCCceEEEeeEEEEecccccCCchhhhhHH
Confidence 011222222 12344444333 433 23345789999999999987775655443
No 20
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.87 E-value=5.3e-22 Score=236.31 Aligned_cols=299 Identities=15% Similarity=0.164 Sum_probs=176.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||.+|++ .|.+|+||||++.+||+|.+ .+|. |.+............+....|.++
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~GG~~~~---~gci----psk~l~~~~~~~~~~~~~~~~~~~ 74 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVGGGCTH---TGTI----PSKALREAVLRLIGFNQNPLYSSY 74 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccccccccc---cCCC----CHHHHHHHHHHHHHHhhhhhhccc
Confidence 35899999999999999999999 66999999998899999984 2331 111100000000000111111222
Q ss_pred CCCCCCCCCCCCHHHHHHHHH-----------HHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLN-----------DFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
+. ...++..++.++.+ .+.++.++ .++.++ +..++ ...+.+.. .++......|
T Consensus 75 ~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~~-------~~~~~v~~-~~g~~~~~~~ 138 (461)
T PRK05249 75 RV-----KLRITFADLLARADHVINKQVEVRRGQYERNRV--DLIQGR-ARFVD-------PHTVEVEC-PDGEVETLTA 138 (461)
T ss_pred CC-----cCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE-EEEec-------CCEEEEEe-CCCceEEEEc
Confidence 11 11224445544433 33333333 444332 22222 23333432 1222235678
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +|||||| +.|..|++++.. + +......
T Consensus 139 d-----~lviATG--s~p~~p~~~~~~-----~-------------~~v~~~~--------------------------- 166 (461)
T PRK05249 139 D-----KIVIATG--SRPYRPPDVDFD-----H-------------PRIYDSD--------------------------- 166 (461)
T ss_pred C-----EEEEcCC--CCCCCCCCCCCC-----C-------------CeEEcHH---------------------------
Confidence 9 9999999 888888764310 0 0000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------C
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------N 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~ 302 (1129)
....+. .. +++++| ||+|++|+|+|..|++.|.+|+++++.+.+++..+++ +
T Consensus 167 --~~~~~~-~~-------~~~v~I----iGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gI~ 232 (461)
T PRK05249 167 --SILSLD-HL-------PRSLII----YGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYHLRDSGVT 232 (461)
T ss_pred --Hhhchh-hc-------CCeEEE----ECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHHHHHcCCE
Confidence 000000 01 233333 8999999999999999999999999998776543221 4
Q ss_pred eEEcCCceEEc--CCc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccc
Q psy12350 303 VVKKPDIAELT--PTG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYT 377 (1129)
Q Consensus 303 i~~~~~v~~~~--~~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~ 377 (1129)
+.....|++++ +++ +.+++|+++++|.||+|+|.+++...+. +..++..+++..+....++ -.+.|++|.+|..
T Consensus 233 v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~IyAiGD~ 311 (461)
T PRK05249 233 IRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENY-QTAVPHIYAVGDV 311 (461)
T ss_pred EEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCc-ccCCCCEEEeeec
Confidence 55567788886 333 4567888899999999999999988642 2455666554433332222 2578999999986
Q ss_pred ccccc--cccccceeeehhhccc
Q psy12350 378 YRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 378 ~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
...|. ..+..|++.+|.++.+
T Consensus 312 ~~~~~~~~~A~~~g~~aa~~i~g 334 (461)
T PRK05249 312 IGFPSLASASMDQGRIAAQHAVG 334 (461)
T ss_pred CCCcccHhHHHHHHHHHHHHHcC
Confidence 53221 1223777777777763
No 21
>PRK06116 glutathione reductase; Validated
Probab=99.87 E-value=4.2e-22 Score=235.95 Aligned_cols=290 Identities=16% Similarity=0.191 Sum_probs=174.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccccc-CCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMEL-SGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~-~d~ 87 (1129)
.+||+||||||||++||..|++ .|++|+|+|+. .+||+|.+ .+|. |.+...|..-. ...+..+ +.|
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~-~~GG~c~n---~gci----P~k~l~~~~~~---~~~~~~~~~~~ 70 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAAM--YGAKVALIEAK-RLGGTCVN---VGCV----PKKLMWYGAQI---AEAFHDYAPGY 70 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecc-chhhhhhc---cCcc----hHHHHHHHHHH---HHHHHhHHHhc
Confidence 4899999999999999999999 67999999995 79999984 4442 22222222100 0000000 001
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHH-----------HHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDF-----------ADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
.+.. .........+.++.+.. .++.++ .+..++ ++.++ ..++++ + .....|
T Consensus 71 g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~-~~~v~-------~~~v~~----~--g~~~~~ 132 (450)
T PRK06116 71 GFDV--TENKFDWAKLIANRDAYIDRLHGSYRNGLENNGV--DLIEGF-ARFVD-------AHTVEV----N--GERYTA 132 (450)
T ss_pred CCCC--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEcc-------CCEEEE----C--CEEEEe
Confidence 1110 00012333444333222 222333 444443 33332 233333 1 235678
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +|||||| +.|..|++||... + ..+.. +
T Consensus 133 d-----~lViATG--s~p~~p~i~g~~~--~-----------------~~~~~--------------------------~ 160 (450)
T PRK06116 133 D-----HILIATG--GRPSIPDIPGAEY--G-----------------ITSDG--------------------------F 160 (450)
T ss_pred C-----EEEEecC--CCCCCCCCCCcce--e-----------------EchhH--------------------------h
Confidence 9 9999999 8899888876210 0 00000 0
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CC
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NN 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~ 302 (1129)
+. .+. ..++++ | ||+|++|+|+|..|++.+.+|+++++.+.+++...+ -+
T Consensus 161 ~~-~~~----~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~ 224 (450)
T PRK06116 161 FA-LEE----LPKRVA-------V----VGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIR 224 (450)
T ss_pred hC-ccc----cCCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcE
Confidence 00 000 123333 3 899999999999999999999999998866543221 14
Q ss_pred eEEcCCceEEcC--Cc---eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecc
Q psy12350 303 VVKKPDIAELTP--TG---VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGY 376 (1129)
Q Consensus 303 i~~~~~v~~~~~--~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~ 376 (1129)
+..++.|.++++ ++ +.+.+|+++++|.||+|+|.+++..+|. +..++..+++..+....++- ++.|++|.+|.
T Consensus 225 i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-Ts~~~IyA~GD 303 (450)
T PRK06116 225 LHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQN-TNVPGIYAVGD 303 (450)
T ss_pred EECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCCC-cCCCCEEEEee
Confidence 555777888863 22 5677898899999999999999998643 34556666554333333322 57899999998
Q ss_pred ccc-ccc-cccccceeeehhhccc
Q psy12350 377 TYR-YPF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 377 ~~~-~~~-~~~~~~~~~~a~~~~~ 398 (1129)
... .++ ..+..||+.+|.++.+
T Consensus 304 ~~~~~~~~~~A~~~g~~aa~~i~g 327 (450)
T PRK06116 304 VTGRVELTPVAIAAGRRLSERLFN 327 (450)
T ss_pred cCCCcCcHHHHHHHHHHHHHHHhC
Confidence 742 222 2223788888887754
No 22
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.87 E-value=8.6e-22 Score=234.15 Aligned_cols=299 Identities=17% Similarity=0.181 Sum_probs=180.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--------CcCceEecCCCCCCCCCCCCccCcccccccccCCcc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--------NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--------~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~ 80 (1129)
.+||+||||||||++||.+|++ .|.+|+|+|+.. .+||+|.+ .+|. |.+...+........+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~--~G~~V~lie~~~~~~~~~~~~~GG~C~n---~gci----PsK~l~~~a~~~~~~~~ 75 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA--HGKKVALFDYVKPSTQGTKWGLGGTCVN---VGCV----PKKLMHYAANIGSIFHH 75 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCCCCccccccccceecc---cccc----chHHHHHHHHHHHHHHh
Confidence 4799999999999999999999 679999999731 49999983 4442 21211111100000000
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEece---eeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNK---NVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~---~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
....|.+.. ..-.+..++.++++..+++++. .++.+. .|+-+.......+.+++.+.+ .+....+.||
T Consensus 76 --~~~~~g~~~---~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~--~~~~~~i~~d 146 (499)
T PTZ00052 76 --DSQMYGWKT---SSSFNWGKLVTTVQNHIRSLNF--SYRTGLRSSKVEYINGLAKLKDEHTVSYGD--NSQEETITAK 146 (499)
T ss_pred --HHhcCCCCC---CCCcCHHHHHHHHHHHHHHhhH--HHHHHhhhcCcEEEEEEEEEccCCEEEEee--CCCceEEECC
Confidence 001111110 1134677888888888877643 222222 333333222223445555542 2223457899
Q ss_pred ceeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+|||||| +.|..|. +||.....+
T Consensus 147 -----~lIIATG--s~p~~p~~i~G~~~~~~------------------------------------------------- 170 (499)
T PTZ00052 147 -----YILIATG--GRPSIPEDVPGAKEYSI------------------------------------------------- 170 (499)
T ss_pred -----EEEEecC--CCCCCCCCCCCccceee-------------------------------------------------
Confidence 9999999 8888874 766211000
Q ss_pred cccccccccc-cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------C
Q psy12350 237 ARCSEDFTEF-RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------N 301 (1129)
Q Consensus 237 ~~~~~~~~~~-~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~ 301 (1129)
...+.+... ..++++| ||||++|+|+|..|++.|.+||+++++. +++...+ -
T Consensus 171 -~~~~~~~~~~~~~~vvI-----------IGgG~iG~E~A~~l~~~G~~Vtli~~~~-~l~~~d~~~~~~l~~~l~~~GV 237 (499)
T PTZ00052 171 -TSDDIFSLSKDPGKTLI-----------VGASYIGLETAGFLNELGFDVTVAVRSI-PLRGFDRQCSEKVVEYMKEQGT 237 (499)
T ss_pred -cHHHHhhhhcCCCeEEE-----------ECCCHHHHHHHHHHHHcCCcEEEEEcCc-ccccCCHHHHHHHHHHHHHcCC
Confidence 000000000 0123333 8999999999999999999999999853 3332211 1
Q ss_pred CeEEcCCceEEcC--C--ceEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecc
Q psy12350 302 NVVKKPDIAELTP--T--GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGY 376 (1129)
Q Consensus 302 ~i~~~~~v~~~~~--~--~v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~ 376 (1129)
++.....++++++ + .+.+++|+++++|.||+|+|++++..+|. +..++.++++.....-.. .++.|++|.+|.
T Consensus 238 ~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts~p~IyAiGD 315 (499)
T PTZ00052 238 LFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTNIPNIFAVGD 315 (499)
T ss_pred EEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCCCCCEEEEEE
Confidence 3444555666653 2 26678898899999999999999999874 356677765442211112 367899999998
Q ss_pred ccc-----ccccccccceeeehhhccc
Q psy12350 377 TYR-----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 377 ~~~-----~~~~~~~~~~~~~a~~~~~ 398 (1129)
... ++.+. .|++.+|.++.+
T Consensus 316 v~~~~~~l~~~A~--~~g~~aa~ni~g 340 (499)
T PTZ00052 316 VVEGRPELTPVAI--KAGILLARRLFK 340 (499)
T ss_pred ecCCCcccHHHHH--HHHHHHHHHHhC
Confidence 642 22233 777777777753
No 23
>PRK06370 mercuric reductase; Validated
Probab=99.86 E-value=2.7e-21 Score=229.81 Aligned_cols=294 Identities=14% Similarity=0.102 Sum_probs=174.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||.+|++ .|++|+|+||. .+||+|.+ .+|. |.+ .++...............++
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~-~~GG~c~~---~gci----Psk-~l~~~a~~~~~~~~~~~~g~ 72 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERG-LLGGTCVN---TGCV----PTK-TLIASARAAHLARRAAEYGV 72 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-ccCCceec---cccC----cHH-HHHHHHHHHHHHHHHHhcCc
Confidence 45899999999999999999999 67999999994 79999984 3442 221 11111110000000011111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHH-----------hc-CCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFAD-----------NF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~-----------~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+.+ ....++..++.++.+..++ +. ++ .++.++.+. + +..++.+ + ...+.
T Consensus 73 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~v~~g~~~~-~-------~~~~v~v----~--~~~~~ 133 (463)
T PRK06370 73 SVG---GPVSVDFKAVMARKRRIRARSRHGSEQWLRGLEGV--DVFRGHARF-E-------SPNTVRV----G--GETLR 133 (463)
T ss_pred ccC---ccCccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCc--EEEEEEEEE-c-------cCCEEEE----C--cEEEE
Confidence 100 0012344555554443332 22 33 455555432 1 2233333 1 13467
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +|||||| +.|..|++||.....+ .
T Consensus 134 ~d-----~lViATG--s~p~~p~i~G~~~~~~------------------~----------------------------- 159 (463)
T PRK06370 134 AK-----RIFINTG--ARAAIPPIPGLDEVGY------------------L----------------------------- 159 (463)
T ss_pred eC-----EEEEcCC--CCCCCCCCCCCCcCce------------------E-----------------------------
Confidence 89 9999999 8899998877321000 0
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------C
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------N 301 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~ 301 (1129)
...+.+.... .+++|+| ||+|++|+|+|..|++.|.+|+++++.+.+++...+ -
T Consensus 160 --~~~~~~~~~~------~~~~vvV----IGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV 227 (463)
T PRK06370 160 --TNETIFSLDE------LPEHLVI----IGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGI 227 (463)
T ss_pred --cchHhhCccc------cCCEEEE----ECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCC
Confidence 0000000000 1233333 899999999999999999999999998877653221 1
Q ss_pred CeEEcCCceEEcCC--c--eEEc--C-CCEeecCEEEEcccccccCCCC-CCCCCeEeecCcccccccccccCCCCCeEE
Q psy12350 302 NVVKKPDIAELTPT--G--VRFQ--D-GSYEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPLYKHLINIEHPSMCI 373 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~--~--v~~~--d-g~~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~ 373 (1129)
++..+..|.+++++ + +.+. + ++++++|.||+|+|.+++...| -+..++.++++..+....++ -.+.|++|.
T Consensus 228 ~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l-~t~~~~IyA 306 (463)
T PRK06370 228 DVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQL-RTTNPGIYA 306 (463)
T ss_pred EEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCC-cCCCCCEEE
Confidence 45567778888643 2 3332 3 3468999999999999998844 23455666655444433332 257899999
Q ss_pred ecccccccc--cccccceeeehhhccc
Q psy12350 374 IGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 374 ~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
+|.....+. .....|++.+|.++.+
T Consensus 307 iGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (463)
T PRK06370 307 AGDCNGRGAFTHTAYNDARIVAANLLD 333 (463)
T ss_pred eeecCCCcccHHHHHHHHHHHHHHHhC
Confidence 998754321 1123677777777754
No 24
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.86 E-value=4.4e-22 Score=209.91 Aligned_cols=192 Identities=22% Similarity=0.326 Sum_probs=117.4
Q ss_pred EEEcCChHHHHHHHHhhcCCCCce-EEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCCC
Q psy12350 13 GVIGGGAGGLTATKRLTEPGSGFT-CTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKG 91 (1129)
Q Consensus 13 ~IIGaG~aGl~aA~~l~~~~~~~~-v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~~ 91 (1129)
+|||||||||++|.+|++ .|.+ |+||||++.+||.|.......+ ..++.... ..+.+++++...
T Consensus 1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~w~~~~~~~~---------~~~~~~~~----~~~~~~~~~~~~ 65 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGVWRRYYSYTR---------LHSPSFFS----SDFGLPDFESFS 65 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--TT---EEEEESSSSSTTHHHCH-TTTT----------BSSSCCT----GGSS--CCCHSC
T ss_pred CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCeeEEeCCCCc---------cccCcccc----ccccCCcccccc
Confidence 799999999999999999 4578 9999999999999984221110 00110000 011111221110
Q ss_pred -------CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 92 -------HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 92 -------~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
.....+++.+++.+|++.+++++++ .++++++|+++++. .++|.+++.+. ....+| +|
T Consensus 66 ~~~~~~~~~~~~~~~~~~v~~yl~~~~~~~~l--~i~~~~~V~~v~~~---~~~w~v~~~~~-----~~~~a~-----~V 130 (203)
T PF13738_consen 66 FDDSPEWRWPHDFPSGEEVLDYLQEYAERFGL--EIRFNTRVESVRRD---GDGWTVTTRDG-----RTIRAD-----RV 130 (203)
T ss_dssp HHHHHHHHHSBSSEBHHHHHHHHHHHHHHTTG--GEETS--EEEEEEE---TTTEEEEETTS------EEEEE-----EE
T ss_pred cccCCCCCCCcccCCHHHHHHHHHHHHhhcCc--ccccCCEEEEEEEe---ccEEEEEEEec-----ceeeee-----eE
Confidence 0124578999999999999999998 59999999999885 35577766432 345577 99
Q ss_pred EEecccCCCCCcccccc-chhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 165 QLMQGHVTLPSKAEMLA-DTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 165 vvAtG~~~~p~~p~i~g-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
|+|||.++.|+.|++|| ... ...|+..+ ..+..+
T Consensus 131 VlAtG~~~~p~~p~~~g~~~~------------------~~~h~~~~---------------------------~~~~~~ 165 (203)
T PF13738_consen 131 VLATGHYSHPRIPDIPGSAFR------------------PIIHSADW---------------------------RDPEDF 165 (203)
T ss_dssp EE---SSCSB---S-TTGGCS------------------EEEEGGG----------------------------STTGGC
T ss_pred EEeeeccCCCCcccccccccc------------------ceEehhhc---------------------------CChhhc
Confidence 99999999999999877 110 11222211 223333
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEH 293 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~ 293 (1129)
++++++| ||+|.||+|+|..|++.|++|++++|++.
T Consensus 166 ---~~k~V~V-----------VG~G~SA~d~a~~l~~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 166 ---KGKRVVV-----------VGGGNSAVDIAYALAKAGKSVTLVTRSPI 201 (203)
T ss_dssp ---TTSEEEE-----------E--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred ---CCCcEEE-----------EcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 3455555 79999999999999999999999999864
No 25
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=3.1e-21 Score=229.25 Aligned_cols=299 Identities=12% Similarity=0.157 Sum_probs=173.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcc-----cccccccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSM-----YKSLKTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~-----y~~l~~~~~~~~~~ 83 (1129)
.+||+||||||||++||.+|++ .|.+|+|+|+ +.+||+|.+ .+|. |.+... +..+....
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~-~~~GG~c~~---~gci----Psk~l~~~~~~~~~~~~~~------ 67 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEK-KYWGGVCLN---VGCI----PSKALLRNAELAHIFTKEA------ 67 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEec-CCCCCceec---CCcc----ccHHHHhhHHHHHHHHHHH------
Confidence 4899999999999999999999 6799999999 579999984 4442 211111 11111000
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecceeee
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRF 162 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 162 (1129)
..+... .........+.++.+...++..-....++ ...|+.++..+...+..++.+.. .+++.....||
T Consensus 68 -~~~gi~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~-~~g~~~~~~~d----- 137 (466)
T PRK07818 68 -KTFGIS---GEVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDL-NDGGTETVTFD----- 137 (466)
T ss_pred -HhcCCC---cCcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEe-cCCCeeEEEcC-----
Confidence 001000 00122444445444433322210001111 12444444332223445555543 22223457899
Q ss_pred EEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccc
Q psy12350 163 FLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSED 242 (1129)
Q Consensus 163 ~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 242 (1129)
+|||||| +.|..| ||.. ..+. .. ...+.
T Consensus 138 ~lViATG--s~p~~~--pg~~---~~~~--------------v~-------------------------------~~~~~ 165 (466)
T PRK07818 138 NAIIATG--SSTRLL--PGTS---LSEN--------------VV-------------------------------TYEEQ 165 (466)
T ss_pred EEEEeCC--CCCCCC--CCCC---CCCc--------------EE-------------------------------chHHH
Confidence 9999999 777654 3310 0000 00 00000
Q ss_pred cccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCC
Q psy12350 243 FTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPD 308 (1129)
Q Consensus 243 ~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~ 308 (1129)
+..... +++++| ||||++|+|+|..|++.|.+|+++++.+.+++..++ -++..++.
T Consensus 166 ~~~~~~------~~~vvV----IGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~~ 235 (466)
T PRK07818 166 ILSREL------PKSIVI----AGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKILTGTK 235 (466)
T ss_pred hccccC------CCeEEE----ECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEEEECCE
Confidence 000001 223333 899999999999999999999999998877664322 14666778
Q ss_pred ceEEcCCc----eEEc--CCC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 309 IAELTPTG----VRFQ--DGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 309 v~~~~~~~----v~~~--dg~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
|+++++++ +.+. ||+ ++++|.||+|+|++++...+. +..++..+++..+....++ -+++|++|++|....
T Consensus 236 v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~-~Ts~p~IyAiGD~~~ 314 (466)
T PRK07818 236 VESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYM-RTNVPHIYAIGDVTA 314 (466)
T ss_pred EEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCc-ccCCCCEEEEeecCC
Confidence 88886542 4454 674 689999999999999988642 2345665544433333332 257899999998742
Q ss_pred ----ccccccccceeeehhhccc
Q psy12350 380 ----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 380 ----~~~~~~~~~~~~~a~~~~~ 398 (1129)
++.+. .|++.+|.++.+
T Consensus 315 ~~~l~~~A~--~~g~~aa~~i~g 335 (466)
T PRK07818 315 KLQLAHVAE--AQGVVAAETIAG 335 (466)
T ss_pred CcccHhHHH--HHHHHHHHHHcC
Confidence 23344 788888887764
No 26
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.86 E-value=1.3e-21 Score=231.82 Aligned_cols=295 Identities=15% Similarity=0.164 Sum_probs=171.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccc-cCCccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKT-NLPKEIMELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~~~~~d 86 (1129)
..+||+||||||||++||..|++ .|.+|+|+|+.+.+||+|.+ .||. |. ..++..... ...+ +...
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n---~gci----P~-K~l~~~a~~~~~~~---~~~~ 69 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLN---VGCI----PS-KALLHVAKVIEEAK---ALAE 69 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccC---CCcc----cH-HHHHHHHHHHHHHh---hhhh
Confidence 35899999999999999999999 67999999998789999983 3432 22 222211000 0001 1111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHh-----------cCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADN-----------FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+.+.. .....+..++.++.+...++ .++ .+..++ +.. .+..++.+.. .+++...+.
T Consensus 70 ~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g~-a~~-------~~~~~v~v~~-~~g~~~~~~ 136 (471)
T PRK06467 70 HGIVF--GEPKIDIDKMRARKEKVVKQLTGGLAGMAKGRKV--TVVNGL-GKF-------TGGNTLEVTG-EDGKTTVIE 136 (471)
T ss_pred cCccc--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEE-------ccCCEEEEec-CCCceEEEE
Confidence 11100 01122445555554443332 232 333332 211 2334454443 122224578
Q ss_pred ecceeeeEEEEecccCCCCCc-cccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSK-AEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFE 234 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~-p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 234 (1129)
|| +|||||| +.|.. |.+++.... ..
T Consensus 137 ~d-----~lViATG--s~p~~~p~~~~~~~~-------------------v~---------------------------- 162 (471)
T PRK06467 137 FD-----NAIIAAG--SRPIQLPFIPHDDPR-------------------IW---------------------------- 162 (471)
T ss_pred cC-----EEEEeCC--CCCCCCCCCCCCCCc-------------------EE----------------------------
Confidence 99 9999999 77764 434331100 00
Q ss_pred cccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC-------------
Q psy12350 235 SFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN------------- 301 (1129)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~------------- 301 (1129)
...+.+..... +++++| ||||++|+|+|..+++.|.+||++++.+.+++..+++
T Consensus 163 ---~~~~~~~~~~~------~~~vvI----iGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~v 229 (471)
T PRK06467 163 ---DSTDALELKEV------PKRLLV----MGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQF 229 (471)
T ss_pred ---ChHHhhccccC------CCeEEE----ECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhce
Confidence 00000100001 223333 8999999999999999999999999998876643321
Q ss_pred CeEEcCCceEEc--CCc--eEEcCC----CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 302 NVVKKPDIAELT--PTG--VRFQDG----SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 302 ~i~~~~~v~~~~--~~~--v~~~dg----~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
++..+..|++++ +++ +.++++ +++++|.||+|+|++++.++|. ...++.++++..+....++ -.+.|++|
T Consensus 230 ~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~-~t~~p~Vy 308 (471)
T PRK06467 230 NIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQC-RTNVPHIF 308 (471)
T ss_pred EEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCc-ccCCCCEE
Confidence 344566777775 333 444443 3589999999999999998753 3455666655433322222 25789999
Q ss_pred Eeccccc----ccccccccceeeehhhccc
Q psy12350 373 IIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.+|.... ++.+. .|++.+|.++.+
T Consensus 309 AiGDv~~~~~la~~A~--~eG~~aa~~i~g 336 (471)
T PRK06467 309 AIGDIVGQPMLAHKGV--HEGHVAAEVIAG 336 (471)
T ss_pred EehhhcCCcccHHHHH--HHHHHHHHHHcC
Confidence 9998643 23344 777777777654
No 27
>PLN02546 glutathione reductase
Probab=99.86 E-value=1.2e-21 Score=232.95 Aligned_cols=287 Identities=17% Similarity=0.195 Sum_probs=169.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcc---------cCCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ---------TDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~---------~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
.+||+||||||||+.||+.|++ .|.+|+|+|+ ...+||+|.+ .||. |.+...+.. ....
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~~~~~~~~~~~GGtC~n---~GCi----PsK~l~~aa---~~~~ 146 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASN--FGASAAVCELPFATISSDTLGGVGGTCVL---RGCV----PKKLLVYAS---KYSH 146 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCCccCcccC---cchH----HHHHHHHHH---HHHH
Confidence 4799999999999999999999 6799999996 2568999994 5552 333222221 1111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHH-----------hcCCcceeEeceeeeeeccccccCCCCceEEecccc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFAD-----------NFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR 148 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 148 (1129)
.+.....|.+... ...-++...+.++.+...+ +.++ .+..+ +++.++ ..++.+ +
T Consensus 147 ~~~~~~~~g~~~~-~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV--~~i~G-~a~~vd-------~~~V~v----~ 211 (558)
T PLN02546 147 EFEESRGFGWKYE-TEPKHDWNTLIANKNAELQRLTGIYKNILKNAGV--TLIEG-RGKIVD-------PHTVDV----D 211 (558)
T ss_pred HHHhhhhcCcccC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEe-EEEEcc-------CCEEEE----C
Confidence 1111111211100 0011233444443333222 2222 23322 122222 122322 1
Q ss_pred CccceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccc
Q psy12350 149 DTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVL 228 (1129)
Q Consensus 149 ~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 228 (1129)
...+.|| +|||||| +.|..|++||... + .
T Consensus 212 --G~~~~~D-----~LVIATG--s~p~~P~IpG~~~--v------------~---------------------------- 240 (558)
T PLN02546 212 --GKLYTAR-----NILIAVG--GRPFIPDIPGIEH--A------------I---------------------------- 240 (558)
T ss_pred --CEEEECC-----EEEEeCC--CCCCCCCCCChhh--c------------c----------------------------
Confidence 2346788 9999999 8999998877210 0 0
Q ss_pred hhccccccccccccccc-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC------
Q psy12350 229 LKIYFESFARCSEDFTE-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN------ 301 (1129)
Q Consensus 229 ~~~~~~~~~~~~~~~~~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~------ 301 (1129)
...+.+.. ...++++| ||||++|+|+|..|+..+.+|+++++.+.+++...++
T Consensus 241 ---------~~~~~l~~~~~~k~V~V-----------IGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~ 300 (558)
T PLN02546 241 ---------DSDAALDLPSKPEKIAI-----------VGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVA 300 (558)
T ss_pred ---------CHHHHHhccccCCeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHH
Confidence 00000000 01233443 8999999999999999999999999988765432211
Q ss_pred --------CeEEcCCceEEcC--Cc-e--EEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcc--ccccccccc
Q psy12350 302 --------NVVKKPDIAELTP--TG-V--RFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNV--QPLYKHLIN 365 (1129)
Q Consensus 302 --------~i~~~~~v~~~~~--~~-v--~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~--~~l~~~~~~ 365 (1129)
++..+..+.++++ ++ + .+.+++.+++|.||+|+|++++..+|. +..++.++++.. ++-|.+
T Consensus 301 ~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~--- 377 (558)
T PLN02546 301 EQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSR--- 377 (558)
T ss_pred HHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCce---
Confidence 3455667777753 22 3 334454456899999999999998753 345566654433 333333
Q ss_pred CCCCCeEEeccccc----ccccccccceeeehhhccc
Q psy12350 366 IEHPSMCIIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 366 ~~~p~l~~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
++.|++|.+|.... ++.+. .|++.+|.++.+
T Consensus 378 Ts~p~IYAaGDv~~~~~l~~~A~--~~g~~~a~~i~g 412 (558)
T PLN02546 378 TSVPSIWAVGDVTDRINLTPVAL--MEGGALAKTLFG 412 (558)
T ss_pred eCCCCEEEeeccCCCcccHHHHH--HHHHHHHHHHcC
Confidence 57899999998743 34344 777777777654
No 28
>PRK12831 putative oxidoreductase; Provisional
Probab=99.85 E-value=4.3e-21 Score=225.75 Aligned_cols=286 Identities=16% Similarity=0.185 Sum_probs=174.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||.+|++ .|++|+|||+.+.+||++.|. +++|
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~g------------------------------ip~~ 186 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYG------------------------------IPEF 186 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeec------------------------------CCCc
Confidence 45899999999999999999999 679999999999999999851 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+ +.+++..+..++.+++++ .+++++.|.. .+.+ .. ......|| +||||
T Consensus 187 ~l---------~~~~~~~~~~~~~~~~gv--~i~~~~~v~~-----------~v~~---~~-~~~~~~~d-----~viiA 235 (464)
T PRK12831 187 RL---------PKETVVKKEIENIKKLGV--KIETNVVVGK-----------TVTI---DE-LLEEEGFD-----AVFIG 235 (464)
T ss_pred cC---------CccHHHHHHHHHHHHcCC--EEEcCCEECC-----------cCCH---HH-HHhccCCC-----EEEEe
Confidence 11 112456666677777777 7888886621 0001 00 01123489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. ..|..|++||... .| .++. .++.... ....+. ..+.
T Consensus 236 tGa-~~~~~l~ipG~~~---~g---------------V~~~~~~l~~~~-----------------~~~~~~--~~~~-- 275 (464)
T PRK12831 236 SGA-GLPKFMGIPGENL---NG---------------VFSANEFLTRVN-----------------LMKAYK--PEYD-- 275 (464)
T ss_pred CCC-CCCCCCCCCCcCC---cC---------------cEEHHHHHHHHH-----------------hccccc--cccc--
Confidence 993 2578888887321 11 1111 1110000 000000 0000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCc-ccccC-------CC--CeEEcCCceEEcC--
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHV-KKLRF-------PN--NVVKKPDIAELTP-- 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~-~~~~~-------~~--~i~~~~~v~~~~~-- 314 (1129)
..+..|++|+| ||||++|+|+|..+.+.|.+||+++|.... ++... .+ ++.....+.++.+
T Consensus 276 ---~~~~~gk~VvV----IGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~~~~~~i~~~~ 348 (464)
T PRK12831 276 ---TPIKVGKKVAV----VGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLLTNPVEILGDE 348 (464)
T ss_pred ---CcccCCCeEEE----ECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEecccceEEEecC
Confidence 00112444444 899999999999999999999999986531 11100 11 3444555666642
Q ss_pred Cc----eEEc------------------CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCC
Q psy12350 315 TG----VRFQ------------------DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 315 ~~----v~~~------------------dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
++ |.+. +|+ ++++|.||+|+|+.++..++....++..+++..+....+.+.++.|+
T Consensus 349 ~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pg 428 (464)
T PRK12831 349 NGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEG 428 (464)
T ss_pred CCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCC
Confidence 22 3331 233 47999999999999998887643556665544333333334467899
Q ss_pred eEEeccccccc--ccccccceeeehhhcccccccc
Q psy12350 371 MCIIGYTYRYP--FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 371 l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
+|.+|.....| ...+..+|+.+|..+...+.+.
T Consensus 429 VfAaGD~~~g~~~v~~Ai~~G~~AA~~I~~~L~~~ 463 (464)
T PRK12831 429 VFAGGDAVTGAATVILAMGAGKKAAKAIDEYLSKK 463 (464)
T ss_pred EEEeCCCCCCchHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999885422 2334488888888777665543
No 29
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.85 E-value=2.1e-21 Score=230.43 Aligned_cols=285 Identities=15% Similarity=0.150 Sum_probs=171.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
|+|+|||||+|||+||..|++.+.+.+|+|||+++.++ |. + ..++...
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~--~~--~--------------------~~~~~~~-------- 48 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVS--FG--A--------------------CGLPYFV-------- 48 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcce--ee--c--------------------CCCceEe--------
Confidence 48999999999999999999977778999999987542 11 0 0000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
...+....++..+..+..++.++ +++++++|++|+. +.+.+.+.+...+......|| +||||||
T Consensus 49 ----~~~~~~~~~~~~~~~~~~~~~gv--~~~~~~~V~~id~-----~~~~v~~~~~~~~~~~~~~yd-----~lviAtG 112 (444)
T PRK09564 49 ----GGFFDDPNTMIARTPEEFIKSGI--DVKTEHEVVKVDA-----KNKTITVKNLKTGSIFNDTYD-----KLMIATG 112 (444)
T ss_pred ----ccccCCHHHhhcCCHHHHHHCCC--eEEecCEEEEEEC-----CCCEEEEEECCCCCEEEecCC-----EEEECCC
Confidence 00111222333333444455666 7888999999876 344555543222222223499 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||..... ...... +..+....+.+.....+
T Consensus 113 --~~~~~~~i~g~~~~~------------------v~~~~~----------------------~~~~~~l~~~l~~~~~~ 150 (444)
T PRK09564 113 --ARPIIPPIKNINLEN------------------VYTLKS----------------------MEDGLALKELLKDEEIK 150 (444)
T ss_pred --CCCCCCCCCCcCCCC------------------EEEECC----------------------HHHHHHHHHHHhhcCCC
Confidence 788888887632110 000000 00000111111111123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAELTP 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~~~ 314 (1129)
+++| ||||++|+|+|..++..+++|+++++.+.+++..++ -++..++.|+++++
T Consensus 151 ~vvV-----------vGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~ 219 (444)
T PRK09564 151 NIVI-----------IGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIG 219 (444)
T ss_pred EEEE-----------ECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEec
Confidence 4444 899999999999999999999999998866542221 14556778888865
Q ss_pred Cc---eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----------
Q psy12350 315 TG---VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----------- 380 (1129)
Q Consensus 315 ~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----------- 380 (1129)
++ ....++.++++|.||+|+|++++.++++. .++..+++..+....++- ++.|++|.+|.....
T Consensus 220 ~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~~l~~-~gl~~~~~g~i~vd~~~~-t~~~~IyA~GD~~~~~~~~~~~~~~~ 297 (444)
T PRK09564 220 EDKVEGVVTDKGEYEADVVIVATGVKPNTEFLED-TGLKTLKNGAIIVDEYGE-TSIENIYAAGDCATIYNIVSNKNVYV 297 (444)
T ss_pred CCcEEEEEeCCCEEEcCEEEECcCCCcCHHHHHh-cCccccCCCCEEECCCcc-cCCCCEEEeeeEEEEEeccCCCeeec
Confidence 43 23345667999999999999999888763 445544433222222221 467889998877432
Q ss_pred cc-cccccceeeehhhcc
Q psy12350 381 PF-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 381 ~~-~~~~~~~~~~a~~~~ 397 (1129)
|+ ..+..||+.+|.++.
T Consensus 298 ~~~~~A~~qg~~~a~ni~ 315 (444)
T PRK09564 298 PLATTANKLGRMVGENLA 315 (444)
T ss_pred cchHHHHHHHHHHHHHhc
Confidence 11 112266666666665
No 30
>PRK14727 putative mercuric reductase; Provisional
Probab=99.85 E-value=3.8e-21 Score=228.54 Aligned_cols=304 Identities=14% Similarity=0.134 Sum_probs=171.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.++||+||||||||++||+.|++ .|.+|+|+||++.+||+|.+ .||. |.+...+........+.. .+.++
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~~~GG~c~n---~Gci----Psk~l~~~a~~~~~~~~~-~~~g~ 84 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGADVIGGCCVN---VGCV----PSKILIRAAQLAHQQRSN-PFDGV 84 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCcceeEecc---cccc----ccHHHHHHHHHHHHHhhc-cccCc
Confidence 45899999999999999999999 66899999998899999994 4542 222221111111111110 11111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcC---CcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFN---LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~---~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
+. . . .-.+...+..+.+.....+. ....+..+..|+-+...+...+.+.+.+.. .+++...+.|| +|
T Consensus 85 ~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~-~~g~~~~~~~d-----~l 154 (479)
T PRK14727 85 EA--V-A-PSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRL-HDGGERVLAAD-----RC 154 (479)
T ss_pred cc--C-C-CccCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEe-CCCceEEEEeC-----EE
Confidence 10 0 0 01234444443333322210 000111111233222222222344555543 22222457899 99
Q ss_pred EEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc
Q psy12350 165 QLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT 244 (1129)
Q Consensus 165 vvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (1129)
||||| +.|..|++||..... + + ...+.+.
T Consensus 155 ViATG--s~p~~p~i~G~~~~~-----------------------~----------------------~----~~~~~l~ 183 (479)
T PRK14727 155 LIATG--STPTIPPIPGLMDTP-----------------------Y----------------------W----TSTEALF 183 (479)
T ss_pred EEecC--CCCCCCCCCCcCccc-----------------------e----------------------e----cchHHhc
Confidence 99999 889999887731100 0 0 0011111
Q ss_pred cccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCce
Q psy12350 245 EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIA 310 (1129)
Q Consensus 245 ~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~ 310 (1129)
.... +++++| ||+|++|+|+|..+++.|.+|+++++.. +++..++. ++..+..|+
T Consensus 184 ~~~~------~k~vvV----IGgG~iG~E~A~~l~~~G~~Vtlv~~~~-~l~~~d~~~~~~l~~~L~~~GV~i~~~~~V~ 252 (479)
T PRK14727 184 SDEL------PASLTV----IGSSVVAAEIAQAYARLGSRVTILARST-LLFREDPLLGETLTACFEKEGIEVLNNTQAS 252 (479)
T ss_pred cccC------CCeEEE----ECCCHHHHHHHHHHHHcCCEEEEEEcCC-CCCcchHHHHHHHHHHHHhCCCEEEcCcEEE
Confidence 0001 223333 8999999999999999999999999853 33322211 345566787
Q ss_pred EEcC--Cce--EEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc----c
Q psy12350 311 ELTP--TGV--RFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----P 381 (1129)
Q Consensus 311 ~~~~--~~v--~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----~ 381 (1129)
+++. +++ ...+ .++++|.||+|+|..++..+|. +..++..+++..+....++ -+++|++|.+|..... +
T Consensus 253 ~i~~~~~~~~v~~~~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~~~~~~~~ 330 (479)
T PRK14727 253 LVEHDDNGFVLTTGH-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAM-ETSAPDIYAAGDCSDLPQFVY 330 (479)
T ss_pred EEEEeCCEEEEEEcC-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCe-ecCCCCEEEeeecCCcchhhh
Confidence 7753 333 3334 4689999999999999988753 2345666554433332222 2578999999987532 3
Q ss_pred ccccccceeeehhhcc
Q psy12350 382 FLHESCGIKVVNKNVQ 397 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~ 397 (1129)
.+. .|++.+|.++.
T Consensus 331 ~A~--~~G~~aa~~i~ 344 (479)
T PRK14727 331 VAA--AAGSRAGINMT 344 (479)
T ss_pred HHH--HHHHHHHHHHc
Confidence 333 66666666654
No 31
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.85 E-value=3.7e-21 Score=222.56 Aligned_cols=273 Identities=16% Similarity=0.227 Sum_probs=175.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||+||+++|+.|++.+++.+|+|+++++.. .|.. ..++..+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~----------------------~y~~--~~l~~~~~------- 51 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD----------------------EYNK--PDLSHVFS------- 51 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC----------------------CcCc--CcCcHHHh-------
Confidence 5899999999999999999998888999999996631 1110 01111110
Q ss_pred CCCCCCCCCCHHHHHH-HHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 90 KGHPDKSYIAANDVLE-YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~-yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.....+++.. ..+++++++++ .++++++|+++++ +.+.+.. + .....|| +|||||
T Consensus 52 ------~~~~~~~~~~~~~~~~~~~~gv--~~~~~~~V~~id~-----~~~~v~~----~--~~~~~yd-----~LVlAT 107 (377)
T PRK04965 52 ------QGQRADDLTRQSAGEFAEQFNL--RLFPHTWVTDIDA-----EAQVVKS----Q--GNQWQYD-----KLVLAT 107 (377)
T ss_pred ------CCCCHHHhhcCCHHHHHHhCCC--EEECCCEEEEEEC-----CCCEEEE----C--CeEEeCC-----EEEECC
Confidence 0112233333 24566677776 7888999998876 2333332 1 2356799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... .+ .+... .. +......+ ...
T Consensus 108 G--~~~~~p~i~G~~~-v~-------------~~~~~--~~--------------------------~~~~~~~~--~~~ 141 (377)
T PRK04965 108 G--ASAFVPPIPGREL-ML-------------TLNSQ--QE--------------------------YRAAETQL--RDA 141 (377)
T ss_pred C--CCCCCCCCCCCce-EE-------------EECCH--HH--------------------------HHHHHHHh--hcC
Confidence 9 7888888877311 00 00000 00 00000001 012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELT 313 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~ 313 (1129)
++++| ||||++|+|+|..|++.+.+|+++++.+.+++...+. ++.....|++++
T Consensus 142 ~~vvV-----------iGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 210 (377)
T PRK04965 142 QRVLV-----------VGGGLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLE 210 (377)
T ss_pred CeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEE
Confidence 34444 7999999999999999999999999988765432221 345567788887
Q ss_pred CC----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----cc-c
Q psy12350 314 PT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-----PF-L 383 (1129)
Q Consensus 314 ~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-----~~-~ 383 (1129)
.+ .+.+.||+++++|.||+|+|++++..+++ ..++..+....++-+.+ +++|++|++|..... |. .
T Consensus 211 ~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~l~~-~~gl~~~~gi~vd~~l~---ts~~~VyA~GD~a~~~~~~~~~~~ 286 (377)
T PRK04965 211 KTDSGIRATLDSGRSIEVDAVIAAAGLRPNTALAR-RAGLAVNRGIVVDSYLQ---TSAPDIYALGDCAEINGQVLPFLQ 286 (377)
T ss_pred ccCCEEEEEEcCCcEEECCEEEECcCCCcchHHHH-HCCCCcCCCEEECCCcc---cCCCCEEEeeecEeECCceeehHH
Confidence 54 27788999999999999999999988765 34454433222222222 468999999987421 22 1
Q ss_pred ccccceeeehhhccc
Q psy12350 384 HESCGIKVVNKNVQP 398 (1129)
Q Consensus 384 ~~~~~~~~~a~~~~~ 398 (1129)
....|++.+|+++.+
T Consensus 287 ~a~~~g~~~a~n~~g 301 (377)
T PRK04965 287 PIQLSAMALAKNLLG 301 (377)
T ss_pred HHHHHHHHHHHHhcC
Confidence 123788888998876
No 32
>PRK07846 mycothione reductase; Reviewed
Probab=99.85 E-value=5.7e-21 Score=224.72 Aligned_cols=298 Identities=15% Similarity=0.154 Sum_probs=178.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+||||||+|.+||..+ .|.+|+|+|+ +.+||+|.+ .||. |.+...+..-.....+. .+.|..
T Consensus 2 yD~vVIG~G~~g~~aa~~~----~G~~V~lie~-~~~GGtC~n---~GCi----PsK~l~~~a~~~~~~~~---~~~~g~ 66 (451)
T PRK07846 2 YDLIIIGTGSGNSILDERF----ADKRIAIVEK-GTFGGTCLN---VGCI----PTKMFVYAADVARTIRE---AARLGV 66 (451)
T ss_pred CCEEEECCCHHHHHHHHHH----CCCeEEEEeC-CCCCCcccC---cCcc----hhHHHHHHHHHHHHHHH---HHhCCc
Confidence 7999999999999998763 3689999998 569999994 4542 33322222111111111 111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCc-ceeE-e-ceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLR-NLCL-V-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~-~~i~-~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.. ...-.+..++.++.+...+++.-. .... + ...|+-+.......+..++.+. + ...+.|| +|||
T Consensus 67 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~---~--g~~~~~d-----~lVi 134 (451)
T PRK07846 67 DA--ELDGVRWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTG---D--GEEITAD-----QVVI 134 (451)
T ss_pred cC--CCCcCCHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEEC---C--CCEEEeC-----EEEE
Confidence 10 111236677777776665554110 0111 1 1123323222222234444442 1 2356789 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|..|++||..... .++. .....+. .
T Consensus 135 ATG--s~p~~p~i~g~~~~~------------------~~~~-----------------------------~~~~~l~-~ 164 (451)
T PRK07846 135 AAG--SRPVIPPVIADSGVR------------------YHTS-----------------------------DTIMRLP-E 164 (451)
T ss_pred cCC--CCCCCCCCCCcCCcc------------------EEch-----------------------------HHHhhhh-h
Confidence 999 889999887621000 0000 0000010 0
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-----------C--CeEEcCCceEEc
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-----------N--NVVKKPDIAELT 313 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-----------~--~i~~~~~v~~~~ 313 (1129)
..++++ | ||||++|+|+|..|++.|.+|++++|.+.+++...+ . ++..+..|++++
T Consensus 165 ~~~~vv-------I----IGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~~~~v~i~~~~~v~~i~ 233 (451)
T PRK07846 165 LPESLV-------I----VGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKRWDVRLGRNVVGVS 233 (451)
T ss_pred cCCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHhcCeEEEeCCEEEEEE
Confidence 113333 3 899999999999999999999999998876543221 1 345567788886
Q ss_pred CC--c--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc----cccc
Q psy12350 314 PT--G--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----PFLH 384 (1129)
Q Consensus 314 ~~--~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----~~~~ 384 (1129)
++ + +.+.+|+++++|.||+|+|.+++.++|. +..++..+++..+....++- ++.|++|.+|..... +.+.
T Consensus 234 ~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~-Ts~p~IyA~GD~~~~~~l~~~A~ 312 (451)
T PRK07846 234 QDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQR-TSAEGVFALGDVSSPYQLKHVAN 312 (451)
T ss_pred EcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCcc-cCCCCEEEEeecCCCccChhHHH
Confidence 43 3 5667888999999999999999999974 34567766554333323322 689999999987532 2244
Q ss_pred cccceeeehhhccc
Q psy12350 385 ESCGIKVVNKNVQP 398 (1129)
Q Consensus 385 ~~~~~~~~a~~~~~ 398 (1129)
.|++.+|.++.+
T Consensus 313 --~~g~~~a~ni~~ 324 (451)
T PRK07846 313 --HEARVVQHNLLH 324 (451)
T ss_pred --HHHHHHHHHHcC
Confidence 777777777753
No 33
>PRK10262 thioredoxin reductase; Provisional
Probab=99.85 E-value=2.3e-20 Score=211.14 Aligned_cols=285 Identities=15% Similarity=0.218 Sum_probs=178.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
...++|+|||||||||+||..|++ .++++++||+ ...||.+..... ...++.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~-~~~gg~~~~~~~-------------------------~~~~~~ 55 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITG-MEKGGQLTTTTE-------------------------VENWPG 55 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEe-ecCCCceecCce-------------------------ECCCCC
Confidence 346899999999999999999999 5689999996 468998874110 111111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.+...+..++.++++++++.++. .++++ +|+.|+.. .+.|.++ . . ...+.|| +||+
T Consensus 56 -------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~v~~v~~~---~~~~~v~--~--~--~~~~~~d-----~vil 111 (321)
T PRK10262 56 -------DPNDLTGPLLMERMHEHATKFET--EIIFD-HINKVDLQ---NRPFRLT--G--D--SGEYTCD-----ALII 111 (321)
T ss_pred -------CCCCCCHHHHHHHHHHHHHHCCC--EEEee-EEEEEEec---CCeEEEE--e--c--CCEEEEC-----EEEE
Confidence 11234567889999999998876 55554 45555542 1223332 1 1 1246789 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|+.|++||.. .+.++ +.+... ..+.+ ..
T Consensus 112 AtG--~~~~~~~i~g~~--~~~~~-------------~v~~~~-----------------------------~~~~~-~~ 144 (321)
T PRK10262 112 ATG--ASARYLGLPSEE--AFKGR-------------GVSACA-----------------------------TCDGF-FY 144 (321)
T ss_pred CCC--CCCCCCCCCCHH--HcCCC-------------cEEEee-----------------------------cCCHH-Hc
Confidence 999 778888888732 12111 000000 00011 01
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc---------cC-CC--CeEEcCCceEEcC
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL---------RF-PN--NVVKKPDIAELTP 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~---------~~-~~--~i~~~~~v~~~~~ 314 (1129)
.+++++| ||+|++|+|+|..|++.+++|++++|.+.+... .+ .. ++..+..|+++++
T Consensus 145 ~g~~vvV-----------vGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~ 213 (321)
T PRK10262 145 RNQKVAV-----------IGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTG 213 (321)
T ss_pred CCCEEEE-----------ECCCHHHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEc
Confidence 2344444 899999999999999999999999998754211 00 11 3455677888876
Q ss_pred C-----ceEEcCC------CEeecCEEEEcccccccCCCCCCCCCeEeecCc-cccccc--ccccCCCCCeEEecccccc
Q psy12350 315 T-----GVRFQDG------SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKN-VQPLYK--HLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 315 ~-----~v~~~dg------~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~-~~~l~~--~~~~~~~p~l~~~G~~~~~ 380 (1129)
+ +|.++++ +++++|.||+|+|++++..++... +..+... ..+-+. .-..++.|++|.+|.....
T Consensus 214 ~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~l~~~~--l~~~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~ 291 (321)
T PRK10262 214 DQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQ--LELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDH 291 (321)
T ss_pred CCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChhHhhcc--ccccCCEEEECCCCcccccccCCCCEEECeeccCC
Confidence 5 3666543 368999999999999998876532 2222111 111100 0123689999999988643
Q ss_pred ---cccccccceeeehhhcccccccc
Q psy12350 381 ---PFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 381 ---~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
+......++..+|..+...+.++
T Consensus 292 ~~~~~~~A~~~g~~Aa~~~~~~l~~~ 317 (321)
T PRK10262 292 IYRQAITSAGTGCMAALDAERYLDGL 317 (321)
T ss_pred CcceEEEEehhHHHHHHHHHHHHHhc
Confidence 23444477766666666555444
No 34
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.85 E-value=1e-20 Score=225.13 Aligned_cols=295 Identities=16% Similarity=0.210 Sum_probs=173.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccc-cccCCccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSL-KTNLPKEIMELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l-~~~~~~~~~~~~d 86 (1129)
..+||+||||||||++||..|++ .|++|+|+||.. +||+|.+ .+|. |.+ .++... .....+ .+..
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~-~GG~c~~---~gci----P~k-~l~~~~~~~~~~~---~~~~ 68 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEK-LGGTCLN---RGCI----PSK-ALLHAAERADEAR---HSED 68 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH--CCCcEEEEeccc-cccceee---cccC----CcH-HHHHhhhHHHHHH---HHHh
Confidence 35899999999999999999999 679999999976 9999984 3432 211 111100 000011 1112
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHh-----------cCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADN-----------FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
|.+.. ....+...++.+|.+...++ .++ .++.++ ++.+ +..++++... .+ .....
T Consensus 69 ~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~~-------~~~~~~v~~~-~~-~~~~~ 134 (462)
T PRK06416 69 FGIKA--ENVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKV--DIIRGE-AKLV-------DPNTVRVMTE-DG-EQTYT 134 (462)
T ss_pred cCccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEc-------cCCEEEEecC-CC-cEEEE
Confidence 21110 11134566777775554433 333 344432 2222 2233444321 11 24578
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +|||||| +.|..| ||.. ..+. ..++.
T Consensus 135 ~d-----~lViAtG--s~p~~~--pg~~---~~~~-------------~v~~~--------------------------- 162 (462)
T PRK06416 135 AK-----NIILATG--SRPREL--PGIE---IDGR-------------VIWTS--------------------------- 162 (462)
T ss_pred eC-----EEEEeCC--CCCCCC--CCCC---CCCC-------------eEEcc---------------------------
Confidence 99 9999999 667554 2310 0000 00000
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------- 301 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------- 301 (1129)
.....+. ...++++ | ||||++|+|+|..|++.|.+||+++|.+.+++...++
T Consensus 163 --~~~~~~~-~~~~~vv-------V----vGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV 228 (462)
T PRK06416 163 --DEALNLD-EVPKSLV-------V----IGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGI 228 (462)
T ss_pred --hHhhCcc-ccCCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCC
Confidence 0000000 0113333 3 8999999999999999999999999988776542221
Q ss_pred CeEEcCCceEEcCC--c--eEEcCC---CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEE
Q psy12350 302 NVVKKPDIAELTPT--G--VRFQDG---SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCI 373 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~--~--v~~~dg---~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~ 373 (1129)
++..+..|++++++ + +.+++| +++++|.||+|+|.+++..++. +..++..+ +..+....++- ++.|++|.
T Consensus 229 ~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~~-t~~~~VyA 306 (462)
T PRK06416 229 KIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQLR-TNVPNIYA 306 (462)
T ss_pred EEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCCc-cCCCCEEE
Confidence 45567778888643 3 445566 6789999999999999998863 24455555 33333323322 67899999
Q ss_pred ecccccc-cc-cccccceeeehhhccc
Q psy12350 374 IGYTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 374 ~G~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
+|..... ++ .....|++.+|.++.+
T Consensus 307 iGD~~~~~~~~~~A~~~g~~aa~ni~~ 333 (462)
T PRK06416 307 IGDIVGGPMLAHKASAEGIIAAEAIAG 333 (462)
T ss_pred eeecCCCcchHHHHHHHHHHHHHHHcC
Confidence 9987532 22 1223787777777764
No 35
>PRK14694 putative mercuric reductase; Provisional
Probab=99.85 E-value=1.2e-20 Score=224.22 Aligned_cols=301 Identities=18% Similarity=0.211 Sum_probs=174.3
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcc
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~ 80 (1129)
||++ ..++|+||||||||++||..|++ .|.+|+|||++ .+||+|.+ .||. |.+ .++...+......
T Consensus 1 ~~~~---~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~-~~GGtc~n---~Gci----Psk-~l~~~a~~~~~~~ 66 (468)
T PRK14694 1 MMSD---NNLHIAVIGSGGSAMAAALKATE--RGARVTLIERG-TIGGTCVN---IGCV----PSK-IMIRAAHIAHLRR 66 (468)
T ss_pred CCCC---CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEcc-ccccceec---CCcc----ccH-HHHHHHHHHHHHh
Confidence 6654 45899999999999999999999 56899999995 79999984 5552 222 2222111111000
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-------Cc--ceeEe-ceeeeeeccccccCCCCceEEeccccCc
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFN-------LR--NLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-------~~--~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
...+ ++.++. ...-++..++.++.++..+.+. +. ..+.+ .-+|+.++. +.|.+++. ++.
T Consensus 67 ~~~~-~~g~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~-----~~~~V~~~---~g~ 135 (468)
T PRK14694 67 ESPF-DDGLSA--QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDE-----RTLTVTLN---DGG 135 (468)
T ss_pred hccc-cCCccc--CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecC-----CEEEEEec---CCC
Confidence 0010 011110 0112356667766665544331 10 01111 223444432 33444432 222
Q ss_pred cceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchh
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLK 230 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 230 (1129)
.....|| +|||||| +.|..|++||.....+ ..+
T Consensus 136 ~~~~~~d-----~lViATG--s~p~~p~i~G~~~~~~-----------------~~~----------------------- 168 (468)
T PRK14694 136 EQTVHFD-----RAFIGTG--ARPAEPPVPGLAETPY-----------------LTS----------------------- 168 (468)
T ss_pred eEEEECC-----EEEEeCC--CCCCCCCCCCCCCCce-----------------Ecc-----------------------
Confidence 2457899 9999999 8899998877321000 000
Q ss_pred cccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC----------
Q psy12350 231 IYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------- 300 (1129)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------- 300 (1129)
.....+. ...++++| ||+|++|+|+|..|++.+.+|+++++. ++++...+
T Consensus 169 -------~~~~~l~-~~~~~vvV-----------iG~G~~G~E~A~~l~~~g~~Vtlv~~~-~~l~~~~~~~~~~l~~~l 228 (468)
T PRK14694 169 -------TSALELD-HIPERLLV-----------IGASVVALELAQAFARLGSRVTVLARS-RVLSQEDPAVGEAIEAAF 228 (468)
T ss_pred -------hhhhchh-cCCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEECC-CCCCCCCHHHHHHHHHHH
Confidence 0000010 01233333 899999999999999999999999875 33332211
Q ss_pred ----CCeEEcCCceEEcCC--ceEE-cCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 301 ----NNVVKKPDIAELTPT--GVRF-QDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 301 ----~~i~~~~~v~~~~~~--~v~~-~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
-++..+..|++++.+ .+.+ .++.++++|.||+|+|.+++..++. ...++..+ +..+....++ -++.|++|
T Consensus 229 ~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~-~G~i~vd~~~-~Ts~~~Iy 306 (468)
T PRK14694 229 RREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETE-RGAIRIDEHL-QTTVSGIY 306 (468)
T ss_pred HhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccC-CCeEeeCCCc-ccCCCCEE
Confidence 145556778888643 2333 2445799999999999999998863 23444432 2222222222 25789999
Q ss_pred Eecccccc----cccccccceeeehhhcc
Q psy12350 373 IIGYTYRY----PFLHESCGIKVVNKNVQ 397 (1129)
Q Consensus 373 ~~G~~~~~----~~~~~~~~~~~~a~~~~ 397 (1129)
.+|..... +.+. .|++.+|.++.
T Consensus 307 A~GD~~~~~~~~~~A~--~~G~~aa~~i~ 333 (468)
T PRK14694 307 AAGDCTDQPQFVYVAA--AGGSRAAINMT 333 (468)
T ss_pred EEeecCCCcccHHHHH--HHHHHHHHHhc
Confidence 99987532 3333 67777777765
No 36
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.85 E-value=6.5e-21 Score=226.72 Aligned_cols=288 Identities=15% Similarity=0.188 Sum_probs=169.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCccccccc-ccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLK-TNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~-~~~~~~~~~~~d~~ 88 (1129)
+||+||||||||++||.+|++ .|.+|+|+||+. +||+|.+ .||. |.+ .++.... .+..+. .. |.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~--~g~~v~lie~~~-~GG~c~n---~gci----Psk-~l~~~~~~~~~~~~-~~---~g 65 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE--LGASVAMVERGP-LGGTCVN---VGCV----PSK-MLLRAAEVAHYARK-PP---FG 65 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCc-ccCCeee---ecEE----ccH-HHHHHHHHHHHhhc-cC---cc
Confidence 589999999999999999999 669999999965 9999984 4442 222 1121111 111111 01 11
Q ss_pred CCCCCCCCCCCHHHHHHHHH------------HHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYLN------------DFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~------------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
... ....++..++..+.+ ...++.++ .+..++ +..+ +..++.+. .+ .....|
T Consensus 66 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv--~~~~g~-~~~~-------~~~~v~v~---~g-~~~~~~ 129 (463)
T TIGR02053 66 GLA--ATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGV--DYLRGR-ARFK-------DPKTVKVD---LG-REVRGA 129 (463)
T ss_pred ccc--CCCccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCc--EEEEEE-EEEc-------cCCEEEEc---CC-eEEEEe
Confidence 100 001122333333222 22333333 333332 2211 22334332 11 224568
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +|||||| +.|..|++||.....+ .
T Consensus 130 ~-----~lIiATG--s~p~~p~i~G~~~~~~------------------~------------------------------ 154 (463)
T TIGR02053 130 K-----RFLIATG--ARPAIPPIPGLKEAGY------------------L------------------------------ 154 (463)
T ss_pred C-----EEEEcCC--CCCCCCCCCCcccCce------------------E------------------------------
Confidence 8 9999999 8899998877321100 0
Q ss_pred ccccccccc-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------
Q psy12350 237 ARCSEDFTE-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------- 301 (1129)
Q Consensus 237 ~~~~~~~~~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------- 301 (1129)
...+.+.. ...++++| ||+|++|+|+|..|++.|.+||++++.+.+++...++
T Consensus 155 -~~~~~~~~~~~~~~vvI-----------IGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV 222 (463)
T TIGR02053 155 -TSEEALALDRIPESLAV-----------IGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGI 222 (463)
T ss_pred -CchhhhCcccCCCeEEE-----------ECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCC
Confidence 00000000 00133333 8999999999999999999999999998776543221
Q ss_pred CeEEcCCceEEcCC--c--eEEcC---CCEeecCEEEEcccccccCCCC-CCCCCeEeecCcccccccccccCCCCCeEE
Q psy12350 302 NVVKKPDIAELTPT--G--VRFQD---GSYEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPLYKHLINIEHPSMCI 373 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~--~--v~~~d---g~~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~ 373 (1129)
++..++.|++++.+ . +.+.+ ++++++|.||+|+|.+++.+.| -+..++..+++..+....++ -++.|++|.
T Consensus 223 ~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~Ts~~~VyA 301 (463)
T TIGR02053 223 EVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDETL-RTSNPGIYA 301 (463)
T ss_pred EEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCCc-cCCCCCEEE
Confidence 45556778888643 2 44432 3568999999999999998843 23455666554433333222 257899999
Q ss_pred ecccccc----cccccccceeeehhhccc
Q psy12350 374 IGYTYRY----PFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 374 ~G~~~~~----~~~~~~~~~~~~a~~~~~ 398 (1129)
+|..... +.+. .|++.+|.++.+
T Consensus 302 iGD~~~~~~~~~~A~--~~g~~aa~ni~~ 328 (463)
T TIGR02053 302 AGDVTGGLQLEYVAA--KEGVVAAENALG 328 (463)
T ss_pred eeecCCCcccHhHHH--HHHHHHHHHhcC
Confidence 9987532 2344 788888887764
No 37
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.85 E-value=7.6e-21 Score=224.43 Aligned_cols=262 Identities=14% Similarity=0.172 Sum_probs=156.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC-cCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN-VGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~-~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+||||||||++||..|++ .|++|+|+||++. +||+|.+ .+|. |.+...+.. ..
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~~~~GG~c~~---~gci----P~k~~~~~~-~~------------ 60 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESKAMYGGTCIN---IGCI----PTKTLLVAA-EK------------ 60 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCCcccceeeec---Cccc----cchHhhhhh-hc------------
Confidence 4899999999999999999999 6699999999864 7999983 3332 111111110 00
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-----------HHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLND-----------FADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~-----------~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
-.+..++.++.+. ...+.++ .+..++. . ..+..++.+.. .+....+.|
T Consensus 61 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV--~~~~g~~-~-------~~~~~~v~v~~--~~~~~~~~~ 119 (438)
T PRK07251 61 ---------NLSFEQVMATKNTVTSRLRGKNYAMLAGSGV--DLYDAEA-H-------FVSNKVIEVQA--GDEKIELTA 119 (438)
T ss_pred ---------CCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEE-E-------EccCCEEEEee--CCCcEEEEc
Confidence 0112223222221 1222222 2332221 1 11233444432 122235678
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +|||||| +.|..|++||... .++ ....
T Consensus 120 d-----~vViATG--s~~~~p~i~G~~~--~~~---------------v~~~---------------------------- 147 (438)
T PRK07251 120 E-----TIVINTG--AVSNVLPIPGLAD--SKH---------------VYDS---------------------------- 147 (438)
T ss_pred C-----EEEEeCC--CCCCCCCCCCcCC--CCc---------------EEch----------------------------
Confidence 9 9999999 7888888877310 000 0000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------C
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------N 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~ 302 (1129)
.....+. ...++++ | ||||++|+|+|..+++.|.+|++++|++.+++...+. +
T Consensus 148 -~~~~~~~-~~~~~vv-------I----IGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~ 214 (438)
T PRK07251 148 -TGIQSLE-TLPERLG-------I----IGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGIT 214 (438)
T ss_pred -HHHhcch-hcCCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCE
Confidence 0000010 0123333 3 8999999999999999999999999988776543221 3
Q ss_pred eEEcCCceEEcCC--ce-EEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 303 VVKKPDIAELTPT--GV-RFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 303 i~~~~~v~~~~~~--~v-~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
+..+..|++++.+ .+ ...+|+++++|.||+|+|.+++.+.+. +..++..+.+..+....++ ..+.|++|.+|...
T Consensus 215 i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~-~t~~~~IyaiGD~~ 293 (438)
T PRK07251 215 FLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYC-QTSVPGVFAVGDVN 293 (438)
T ss_pred EEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCc-ccCCCCEEEeeecC
Confidence 4556678888643 33 334677899999999999999987653 1233444444333333322 24789999999864
Q ss_pred c
Q psy12350 379 R 379 (1129)
Q Consensus 379 ~ 379 (1129)
.
T Consensus 294 ~ 294 (438)
T PRK07251 294 G 294 (438)
T ss_pred C
Confidence 3
No 38
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.84 E-value=6.4e-21 Score=223.22 Aligned_cols=299 Identities=13% Similarity=0.126 Sum_probs=181.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
.++++|+|||||+||+.+|+.|.. .+++|+|+|+++.. .|.. .++....
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~~~----------------------~~~~---~l~~~~~---- 56 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRNHM----------------------LFTP---LLPQTTT---- 56 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCCCc----------------------chhh---hHHHhcc----
Confidence 345799999999999999999976 56899999997631 1111 1111110
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc-----CccceEEecceee
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR-----DTVGFYLFDLQVR 161 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~d~~~~ 161 (1129)
...+.+++..-++..++.++. ++ ...+|+.|+. +...+.+..... +....+.||
T Consensus 57 ---------g~~~~~~~~~~~~~~~~~~~~--~~-i~~~V~~Id~-----~~~~v~~~~~~~~~~~~~~g~~i~yD---- 115 (424)
T PTZ00318 57 ---------GTLEFRSICEPVRPALAKLPN--RY-LRAVVYDVDF-----EEKRVKCGVVSKSNNANVNTFSVPYD---- 115 (424)
T ss_pred ---------cCCChHHhHHHHHHHhccCCe--EE-EEEEEEEEEc-----CCCEEEEecccccccccCCceEecCC----
Confidence 011223344334555555443 22 3568888876 344444421111 223467899
Q ss_pred eEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccc
Q psy12350 162 FFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSE 241 (1129)
Q Consensus 162 ~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 241 (1129)
+|||||| +.|..|++||..+..+.. .+..++..+....... ++.. ..++
T Consensus 116 -~LViAtG--s~~~~~~ipG~~e~~~~~----~~~~~a~~~~~~l~~~-----------------------~~~~-~~~~ 164 (424)
T PTZ00318 116 -KLVVAHG--ARPNTFNIPGVEERAFFL----KEVNHARGIRKRIVQC-----------------------IERA-SLPT 164 (424)
T ss_pred -EEEECCC--cccCCCCCCCHHHcCCCC----CCHHHHHHHHHHHHHH-----------------------HHHh-cCCC
Confidence 9999999 888888888843321111 0111111110000000 0000 0000
Q ss_pred -cc-ccccccceeEeeceeeeecCCCCCCCCcccchhhhccc--------------ccEEEEccccCCcccccCC-----
Q psy12350 242 -DF-TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE--------------ATTVFLSHHSEHVKKLRFP----- 300 (1129)
Q Consensus 242 -~~-~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~--------------~~~V~lv~r~~~~~~~~~~----- 300 (1129)
+. ...+.++++| ||||++|+|+|..|++. +.+|+|+++.+.+++...+
T Consensus 165 ~~~~~~~~~~~vvV-----------vGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~ 233 (424)
T PTZ00318 165 TSVEERKRLLHFVV-----------VGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKY 233 (424)
T ss_pred CChHHHhccCEEEE-----------ECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHH
Confidence 00 0011124444 79999999999998863 6889999998877653211
Q ss_pred ---------CCeEEcCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCe
Q psy12350 301 ---------NNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 301 ---------~~i~~~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
-++..+..|++++++.|+++||+++++|.||+|+|.+++ +++. .+++..++++.+....++-.+++|++
T Consensus 234 ~~~~L~~~gV~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~-~~~~-~~~l~~~~~G~I~Vd~~l~~~~~~~I 311 (424)
T PTZ00318 234 GQRRLRRLGVDIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG-PLTK-QLKVDKTSRGRISVDDHLRVKPIPNV 311 (424)
T ss_pred HHHHHHHCCCEEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc-chhh-hcCCcccCCCcEEeCCCcccCCCCCE
Confidence 145667889999988999999999999999999999987 5655 34455444444433333333678889
Q ss_pred EEeccccc---------ccccccccceeeehhhcccccccc
Q psy12350 372 CIIGYTYR---------YPFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 372 ~~~G~~~~---------~~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
|.+|.... ++.+. +||+.+|.++.+.+.++
T Consensus 312 fAiGD~a~~~~~~~~~~~~~A~--~qg~~~A~ni~~~l~g~ 350 (424)
T PTZ00318 312 FALGDCAANEERPLPTLAQVAS--QQGVYLAKEFNNELKGK 350 (424)
T ss_pred EEEeccccCCCCCCCCchHHHH--HHHHHHHHHHHHHhcCC
Confidence 99987653 12244 89999999999887765
No 39
>PTZ00058 glutathione reductase; Provisional
Probab=99.84 E-value=1.3e-20 Score=224.08 Aligned_cols=111 Identities=15% Similarity=0.284 Sum_probs=79.5
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC---c--eEEcCC-CE
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT---G--VRFQDG-SY 324 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~---~--v~~~dg-~~ 324 (1129)
||||++|+|+|..++..|.+||++++.+.+++..+++ ++..+..|.+++++ + +.+.++ ++
T Consensus 243 IGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~ 322 (561)
T PTZ00058 243 AGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKY 322 (561)
T ss_pred ECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEE
Confidence 8999999999999999999999999998776543321 45566778888643 2 344454 46
Q ss_pred eecCEEEEcccccccCCCCCCC-CCeEeecCcc--cccccccccCCCCCeEEeccccc
Q psy12350 325 EQVDIILYCTGYTYRYPFLHES-CGIKVVNKNV--QPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 325 ~~~D~VI~atG~~~~~~~l~~~-~~~~~~~~~~--~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
+++|.||+|+|.+++..+|..+ .++.. ++.. ++-|.+ ++.|++|.+|....
T Consensus 323 i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~-~~G~I~VDe~lq---Ts~p~IYA~GDv~~ 376 (561)
T PTZ00058 323 EHFDYVIYCVGRSPNTEDLNLKALNIKT-PKGYIKVDDNQR---TSVKHIYAVGDCCM 376 (561)
T ss_pred EECCEEEECcCCCCCccccCccccceec-CCCeEEECcCCc---cCCCCEEEeEeccC
Confidence 8999999999999999887532 22222 2222 233332 67899999998754
No 40
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.84 E-value=8.6e-21 Score=224.43 Aligned_cols=304 Identities=16% Similarity=0.172 Sum_probs=176.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--------CcCceEecCCCCCCCCCCCCccCccccccc-ccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--------NVGGTWVYTEQTGRDQYGLPVHSSMYKSLK-TNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--------~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~-~~~~~ 79 (1129)
.+||+||||||||+.||..+++ .|.+|+|+|+.. .+||+|.+ .||. |.+ .++.... ....+
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~~~~~~~~~~~~GGtc~n---~GCi----PsK-~l~~~a~~~~~~~ 71 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFVTPTPLGTRWGIGGTCVN---VGCI----PKK-LMHQAALLGQALK 71 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCcceeccccccc---cCcC----chh-HHHHHHHHHHHHh
Confidence 3799999999999999999999 669999999731 58999993 4542 322 2222111 11111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
. ...|.+... ...-.+...+.++.++..+++.-...-.+ ...|+-++..+...+..++.+.. .++....+.||
T Consensus 72 ~---~~~~g~~~~-~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~-~~g~~~~~~~d- 145 (484)
T TIGR01438 72 D---SRNYGWNVE-ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATN-KKGKEKIYSAE- 145 (484)
T ss_pred h---hhhcCcccC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEec-cCCCceEEEeC-
Confidence 1 111111100 00123455666665555544320000011 12333343333333444555543 12223457899
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+|||||| +.|..|++||..+..+ .+.. ...
T Consensus 146 ----~lVIATG--s~p~~p~ipG~~~~~~------------------~~~~--------------------------~~~ 175 (484)
T TIGR01438 146 ----RFLIATG--ERPRYPGIPGAKELCI------------------TSDD--------------------------LFS 175 (484)
T ss_pred ----EEEEecC--CCCCCCCCCCccceee------------------cHHH--------------------------hhc
Confidence 9999999 8899998877311000 0000 000
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~ 304 (1129)
.. . ..++++| ||||++|+|+|..|++.|.+||+++|. .+++..+++ ++.
T Consensus 176 ~~-~----~~~~vvI-----------IGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~L~~~gV~i~ 238 (484)
T TIGR01438 176 LP-Y----CPGKTLV-----------VGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDCANKVGEHMEEHGVKFK 238 (484)
T ss_pred cc-c----cCCCEEE-----------ECCCHHHHHHHHHHHHhCCcEEEEEec-ccccccCHHHHHHHHHHHHHcCCEEE
Confidence 00 0 1133433 799999999999999999999999985 444322211 345
Q ss_pred EcCCceEEcC--Cc--eEEcCCC---EeecCEEEEcccccccCCCCC-CCCCeEeecC-cccccccccccCCCCCeEEec
Q psy12350 305 KKPDIAELTP--TG--VRFQDGS---YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNK-NVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 305 ~~~~v~~~~~--~~--v~~~dg~---~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~-~~~~l~~~~~~~~~p~l~~~G 375 (1129)
.+..+.++++ +. |.+++|+ ++++|.||+|+|.+++..+|. +..++.+++. ..+....+ +.++.|++|.+|
T Consensus 239 ~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~-~~Ts~p~IyA~G 317 (484)
T TIGR01438 239 RQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEE-EQTNVPYIYAVG 317 (484)
T ss_pred eCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCC-cccCCCCEEEEE
Confidence 5666666653 22 5666763 689999999999999998854 3456666532 32222222 225789999999
Q ss_pred cccc-----ccccccccceeeehhhccc
Q psy12350 376 YTYR-----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 376 ~~~~-----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.... ++.+. .|++.+|.++.+
T Consensus 318 Dv~~~~~~l~~~A~--~~g~~aa~~i~~ 343 (484)
T TIGR01438 318 DILEDKQELTPVAI--QAGRLLAQRLFS 343 (484)
T ss_pred EecCCCccchHHHH--HHHHHHHHHHhc
Confidence 8642 22343 777777877754
No 41
>PRK13748 putative mercuric reductase; Provisional
Probab=99.84 E-value=9.1e-21 Score=231.37 Aligned_cols=304 Identities=15% Similarity=0.170 Sum_probs=170.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||..|++ .|.+|+|+|++ .+||+|.+ .||. | ...++.............| ++
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~-~~GG~c~n---~gci----P-sk~l~~~~~~~~~~~~~~~-~~ 164 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE--QGARVTLIERG-TIGGTCVN---VGCV----P-SKIMIRAAHIAHLRRESPF-DG 164 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecC-cceeeccc---cCcc----c-cHHHHHHHHHHHHHhcccc-cC
Confidence 35899999999999999999999 66899999996 89999994 4542 2 2222221111000000011 01
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCC---cceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNL---RNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~---~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
.++. .......+++.++.++....+.. ...+.-...|+-+.......+...+.+.. .+++...+.|| +|
T Consensus 165 g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~-~~g~~~~~~~d-----~l 236 (561)
T PRK13748 165 GIAA--TVPTIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRL-NDGGERVVAFD-----RC 236 (561)
T ss_pred CccC--CCCccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEe-CCCceEEEEcC-----EE
Confidence 1111 01123566666665544433210 00000000122111111111223344432 22222357899 99
Q ss_pred EEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc
Q psy12350 165 QLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT 244 (1129)
Q Consensus 165 vvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (1129)
||||| +.|..|++||..... + + ...+.+.
T Consensus 237 viAtG--s~p~~p~i~g~~~~~-----------------------~----------------------~----~~~~~~~ 265 (561)
T PRK13748 237 LIATG--ASPAVPPIPGLKETP-----------------------Y----------------------W----TSTEALV 265 (561)
T ss_pred EEcCC--CCCCCCCCCCCCccc-----------------------e----------------------E----ccHHHhh
Confidence 99999 889999887732100 0 0 0011111
Q ss_pred c-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCc
Q psy12350 245 E-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDI 309 (1129)
Q Consensus 245 ~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v 309 (1129)
. ...++++| ||+|++|+|+|..|++.|++|++++|.. +++..+++ ++..+..|
T Consensus 266 ~~~~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtli~~~~-~l~~~d~~~~~~l~~~l~~~gI~i~~~~~v 333 (561)
T PRK13748 266 SDTIPERLAV-----------IGSSVVALELAQAFARLGSKVTILARST-LFFREDPAIGEAVTAAFRAEGIEVLEHTQA 333 (561)
T ss_pred cccCCCeEEE-----------ECCCHHHHHHHHHHHHcCCEEEEEecCc-cccccCHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 0 01233333 8999999999999999999999999864 33322211 34556778
Q ss_pred eEEcCC--ceEE-cCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc----c
Q psy12350 310 AELTPT--GVRF-QDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----P 381 (1129)
Q Consensus 310 ~~~~~~--~v~~-~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----~ 381 (1129)
++++.+ .+.+ .++.++++|.||+|+|++++..+|. +..++.++++..+....++ -++.|++|++|..... +
T Consensus 334 ~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~-~Ts~~~IyA~GD~~~~~~~~~ 412 (561)
T PRK13748 334 SQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGM-RTSVPHIYAAGDCTDQPQFVY 412 (561)
T ss_pred EEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCc-ccCCCCEEEeeecCCCccchh
Confidence 887532 3322 2334689999999999999998752 3456666654433322222 2578999999987533 2
Q ss_pred ccccccceeeehhhcc
Q psy12350 382 FLHESCGIKVVNKNVQ 397 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~ 397 (1129)
.+. .|++.+|.++.
T Consensus 413 ~A~--~~g~~aa~~i~ 426 (561)
T PRK13748 413 VAA--AAGTRAAINMT 426 (561)
T ss_pred HHH--HHHHHHHHHHc
Confidence 233 56666666654
No 42
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.84 E-value=8.2e-21 Score=224.88 Aligned_cols=129 Identities=14% Similarity=0.101 Sum_probs=91.6
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC--ce--EEc---CC-
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT--GV--RFQ---DG- 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~--~v--~~~---dg- 322 (1129)
||+|++|+|+|..+++.|++||++++.+.+++...++ ++..+..|++++++ ++ .+. +|
T Consensus 180 IGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~ 259 (466)
T PRK06115 180 IGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLTLEPAAGGA 259 (466)
T ss_pred ECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCc
Confidence 8999999999999999999999999988776543221 45567778888643 33 332 23
Q ss_pred -CEeecCEEEEcccccccCCCCC-CCCCeEeecCcc-cccccccccCCCCCeEEecccccc----cccccccceeeehhh
Q psy12350 323 -SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNV-QPLYKHLINIEHPSMCIIGYTYRY----PFLHESCGIKVVNKN 395 (1129)
Q Consensus 323 -~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~-~~l~~~~~~~~~p~l~~~G~~~~~----~~~~~~~~~~~~a~~ 395 (1129)
+++++|.||+|+|++++...|. +..++..+++.. ++.|. -++.|++|.+|..... +.+. .||+.+|.+
T Consensus 260 ~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~vd~~~---~Ts~~~IyA~GD~~~~~~la~~A~--~~g~~aa~~ 334 (466)
T PRK06115 260 AETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGMLANDHH---RTSVPGVWVIGDVTSGPMLAHKAE--DEAVACIER 334 (466)
T ss_pred eeEEEeCEEEEccCCccccccCCcccccceeCCCCEEECCCe---ecCCCCEEEeeecCCCcccHHHHH--HHHHHHHHH
Confidence 4689999999999999988653 234555554332 22232 2578999999987532 3344 788888887
Q ss_pred ccc
Q psy12350 396 VQP 398 (1129)
Q Consensus 396 ~~~ 398 (1129)
+.+
T Consensus 335 i~~ 337 (466)
T PRK06115 335 IAG 337 (466)
T ss_pred HcC
Confidence 764
No 43
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.84 E-value=1e-20 Score=225.16 Aligned_cols=302 Identities=15% Similarity=0.167 Sum_probs=175.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||++|++ .|.+|+|+|+ +.+||+|.+ .+|. |.+...+...... ....++.|.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~-~~~GG~~~~---~gc~----psk~l~~~~~~~~---~~~~~~~~g 69 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAK--LGKKVALIEK-GPLGGTCLN---VGCI----PSKALIAAAEAFH---EAKHAEEFG 69 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHH--CCCeEEEEeC-Cccccceec---ccee----eHHHHHHHHHHHH---HHHHHHhcC
Confidence 4899999999999999999999 6799999999 789999984 3442 2221111110001 111122222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcc--eeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRN--LCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~--~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
++. .....+..++.++++++++++.... ...-...|+-+.......+.+.+.+ ....+.|| +|||
T Consensus 70 i~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v------~~~~~~~d-----~lIi 136 (460)
T PRK06292 70 IHA--DGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEV------NGERIEAK-----NIVI 136 (460)
T ss_pred CCc--CCCccCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEE------CcEEEEeC-----EEEE
Confidence 211 1134577888888888777653210 0000112222211111112333333 12356788 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc-c
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT-E 245 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~ 245 (1129)
||| +. .|++||... ..+. ... ...+.+. .
T Consensus 137 ATG--s~--~p~ipg~~~--~~~~-------------~~~-------------------------------~~~~~~~~~ 166 (460)
T PRK06292 137 ATG--SR--VPPIPGVWL--ILGD-------------RLL-------------------------------TSDDAFELD 166 (460)
T ss_pred eCC--CC--CCCCCCCcc--cCCC-------------cEE-------------------------------CchHHhCcc
Confidence 999 44 444554211 0000 000 0001110 0
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------------CCeEEcCCceEE
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-------------NNVVKKPDIAEL 312 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-------------~~i~~~~~v~~~ 312 (1129)
...++++ | ||+|++|+|+|..|++.|.+|++++|.+.+++..++ -++..+..|+++
T Consensus 167 ~~~k~v~-------V----IGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~I~i~~~~~v~~i 235 (460)
T PRK06292 167 KLPKSLA-------V----IGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSV 235 (460)
T ss_pred ccCCeEE-------E----ECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhccEEEcCCEEEEE
Confidence 0123333 3 899999999999999999999999998877653221 134456778888
Q ss_pred cCC---ceEE--cCC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc-cc-
Q psy12350 313 TPT---GVRF--QDG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-PF- 382 (1129)
Q Consensus 313 ~~~---~v~~--~dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-~~- 382 (1129)
+++ .+.+ .+| +++++|.||+|+|.+++.++|. +..++..+++..+....++- .+.|++|.+|..... ++
T Consensus 236 ~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~~-ts~~~IyA~GD~~~~~~~~ 314 (460)
T PRK06292 236 EKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHTQ-TSVPGIYAAGDVNGKPPLL 314 (460)
T ss_pred EEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCcc-cCCCCEEEEEecCCCccch
Confidence 643 3543 344 4689999999999999998643 24556665544333333322 478999999987532 11
Q ss_pred cccccceeeehhhccc
Q psy12350 383 LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 383 ~~~~~~~~~~a~~~~~ 398 (1129)
..+..||+.+|.++.+
T Consensus 315 ~~A~~qg~~aa~~i~~ 330 (460)
T PRK06292 315 HEAADEGRIAAENAAG 330 (460)
T ss_pred hHHHHHHHHHHHHhcC
Confidence 2223788888887764
No 44
>PLN02507 glutathione reductase
Probab=99.83 E-value=2.4e-20 Score=221.52 Aligned_cols=267 Identities=19% Similarity=0.272 Sum_probs=173.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc---------cCCcCcccccCCCCCCCCCCCCccccccCcc-------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ---------ADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL------- 803 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~---------~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~------- 803 (1129)
.+++|||+|++|+.+|..+.+.| .+|+|+|+ .+.+||+|.. .||- |.+..++...
T Consensus 26 yDvvVIG~GpaG~~aA~~a~~~G--~~V~liE~~~~~~~~~~~~~~GGtc~n---~Gci----PsK~l~~~a~~~~~~~~ 96 (499)
T PLN02507 26 FDLFVIGAGSGGVRAARFSANFG--AKVGICELPFHPISSESIGGVGGTCVI---RGCV----PKKILVYGATFGGEFED 96 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCcccccccCCCccceeec---cCch----hHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999 99999996 3679999974 3662 2111100000
Q ss_pred ------------cccccc-------ccccc----------cCCC--------CCCC-------CCC--CCCChhhhhhcc
Q psy12350 804 ------------KTNLPK-------DLMEL----------CGYG--------HKGN-------ADK--SYIGAKDVLENY 837 (1129)
Q Consensus 804 ------------~~~~~~-------~~~~~----------~~~~--------~~~~-------~~~--~~~~~~~v~~~~ 837 (1129)
..+..+ ....+ .... .... ... .+....-++++|
T Consensus 97 ~~~~G~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATG 176 (499)
T PLN02507 97 AKNYGWEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATG 176 (499)
T ss_pred HHhcCcccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecC
Confidence 000000 00000 0000 0000 000 122233344599
Q ss_pred CCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-chhhhhcccc
Q psy12350 838 NHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-ITLDIATRAS 916 (1129)
Q Consensus 838 ~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-~~~~~~~~~~ 916 (1129)
+.|..|++||.+. .+++.+...... .+|+|+|||+|.+|+|+|..+++.|++|+++++.+..++ +.+.+.....
T Consensus 177 s~p~~p~ipG~~~----~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~ 251 (499)
T PLN02507 177 SRAQRPNIPGKEL----AITSDEALSLEE-LPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVA 251 (499)
T ss_pred CCCCCCCCCCccc----eechHHhhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHH
Confidence 9999999999753 234433333333 378999999999999999999999999999998765443 2222222211
Q ss_pred EEEEecCCccccccCCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcc
Q psy12350 917 TVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNV 989 (1129)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~ 989 (1129)
+.+. ..+|+++.+ ++++++ ++ +.+.+|+++++|.||+|+|++|+..+|. +..|+++++++.
T Consensus 252 ~~l~------------~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~ 319 (499)
T PLN02507 252 RNLE------------GRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGA 319 (499)
T ss_pred HHHH------------hCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCc
Confidence 1111 125666544 777753 33 5667888899999999999999988754 447788876554
Q ss_pred cccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 990 QPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 990 ~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..+..++ .++.||||++|++... ...+.+..||+.++.++.|.
T Consensus 320 I~Vd~~~-~Ts~p~IyAiGDv~~~~~l~~~A~~qg~~aa~ni~g~ 363 (499)
T PLN02507 320 VKVDEYS-RTNIPSIWAIGDVTNRINLTPVALMEGTCFAKTVFGG 363 (499)
T ss_pred EecCCCC-cCCCCCEEEeeEcCCCCccHHHHHHHHHHHHHHHcCC
Confidence 4443333 4689999999999764 35689999999999999764
No 45
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.83 E-value=8.6e-20 Score=218.89 Aligned_cols=277 Identities=12% Similarity=0.172 Sum_probs=182.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||.+|++ .|++|+|+|+ .+||+|..+ ..++ .+..+
T Consensus 210 ~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~--~~GG~~~~~--------------~~~~-----------~~~~~ 260 (517)
T PRK15317 210 DPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAE--RFGGQVLDT--------------MGIE-----------NFISV 260 (517)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEec--CCCCeeecc--------------Cccc-----------ccCCC
Confidence 35799999999999999999999 6799999986 399999721 0011 01111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+....++.++++.+++++++ .++++++|+.+.+.. +.|.+.. .. .....+| +||+|
T Consensus 261 --------~~~~~~~l~~~l~~~~~~~gv--~i~~~~~V~~I~~~~---~~~~V~~---~~--g~~i~a~-----~vViA 317 (517)
T PRK15317 261 --------PETEGPKLAAALEEHVKEYDV--DIMNLQRASKLEPAA---GLIEVEL---AN--GAVLKAK-----TVILA 317 (517)
T ss_pred --------CCCCHHHHHHHHHHHHHHCCC--EEEcCCEEEEEEecC---CeEEEEE---CC--CCEEEcC-----EEEEC
Confidence 134667899999999999987 788899999987631 2343332 12 2346788 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||.. .+.+. +.+... .....+ ..
T Consensus 318 tG--~~~r~~~ipG~~--~~~~~-------------~v~~~~----------------------------~~~~~~--~~ 350 (517)
T PRK15317 318 TG--ARWRNMNVPGED--EYRNK-------------GVAYCP----------------------------HCDGPL--FK 350 (517)
T ss_pred CC--CCcCCCCCCCHH--HhcCc-------------eEEEee----------------------------ccCchh--cC
Confidence 99 677778887632 12111 000000 000001 12
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc------c---CCCCeEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL------R---FPNNVVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~------~---~~~~i~~~~~v~~~~~~--- 315 (1129)
+++++| ||||++|+|+|..|+..+++|+++++.+.+... . ..-++..+..++++.++
T Consensus 351 gk~VvV-----------VGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g~ 419 (517)
T PRK15317 351 GKRVAV-----------IGGGNSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDK 419 (517)
T ss_pred CCEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCCCc
Confidence 344444 899999999999999999999999998765321 0 11245566778888665
Q ss_pred --ceEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccc
Q psy12350 316 --GVRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHE 385 (1129)
Q Consensus 316 --~v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~ 385 (1129)
++++.+ |+ ++++|.|++|+|++++.++++.. +..+++..+....++ -++.|++|++|.....| ...+
T Consensus 420 v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~--v~~~~~g~i~vd~~l-~Ts~p~IyAaGDv~~~~~k~~~~A 496 (517)
T PRK15317 420 VTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT--VELNRRGEIIVDARG-ATSVPGVFAAGDCTTVPYKQIIIA 496 (517)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEeECCccCchHHhhh--eeeCCCCcEEECcCC-CCCCCCEEECccccCCCCCEEEEh
Confidence 255543 43 47999999999999999998743 555443333222222 25889999999986543 3444
Q ss_pred ccceeeehhhcc
Q psy12350 386 SCGIKVVNKNVQ 397 (1129)
Q Consensus 386 ~~~~~~~a~~~~ 397 (1129)
..++..+|..+.
T Consensus 497 ~~eG~~Aa~~~~ 508 (517)
T PRK15317 497 MGEGAKAALSAF 508 (517)
T ss_pred hhhHHHHHHHHH
Confidence 466666665543
No 46
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.83 E-value=3.7e-20 Score=218.06 Aligned_cols=270 Identities=20% Similarity=0.279 Sum_probs=171.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcc-c--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVH-S-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~-~-- 797 (1129)
.+++|||+||+|+.+|..+.+.| .+|+|+|+. .+||+|.. .||-+ +|++.. .
T Consensus 3 yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~-~~GG~c~~---~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (450)
T TIGR01421 3 YDYLVIGGGSGGIASARRAAEHG--AKALLVEAK-KLGGTCVN---VGCVPKKVMWYASDLAERMHDAADYGFYQNLENT 76 (450)
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEeccc-ccccceec---cCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCc
Confidence 37899999999999999999999 999999994 69999984 35421 011100 0
Q ss_pred cccCccccccc---cc----c-cccc--CCC-------CCCCC-----CCCCCChhhhhhccCCCCCC-CCCCCCCCCCc
Q psy12350 798 SMYKSLKTNLP---KD----L-MELC--GYG-------HKGNA-----DKSYIGAKDVLENYNHPIYP-EFKGKDMCQIP 854 (1129)
Q Consensus 798 ~~y~~~~~~~~---~~----~-~~~~--~~~-------~~~~~-----~~~~~~~~~v~~~~~~P~~P-~i~G~~~f~g~ 854 (1129)
..|..+..... +. . ..+. +.. +..+. ...+....-++++|+.|+.| ++||.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~~---- 152 (450)
T TIGR01421 77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAEL---- 152 (450)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCCCce----
Confidence 00000000000 00 0 0000 000 00000 00112222334499999999 8998752
Q ss_pred EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCC
Q psy12350 855 ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLP 933 (1129)
Q Consensus 855 ~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1129)
.+++.++..... .+|+|+|||+|.+|+|+|..|++.|++||++++.+..++. .+.+.....+.+. .
T Consensus 153 ~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~------------~ 219 (450)
T TIGR01421 153 GTDSDGFFALEE-LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYE------------K 219 (450)
T ss_pred eEcHHHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHH------------H
Confidence 233434333332 3699999999999999999999999999999987654432 2222221111110 1
Q ss_pred CCeEEcCC--eeEEeCC-----cEEecCC-cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCc
Q psy12350 934 NNVVLKPD--VAELTPT-----GVRFQDG-SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTM 1004 (1129)
Q Consensus 934 ~~V~~~~~--i~~v~~~-----~V~~~dG-~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l 1004 (1129)
.+|+++.+ +++++++ .+++++| +.+++|.||+|+|++|+.++|. +..++++++++...+... +.++.|||
T Consensus 220 ~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~T~~p~I 298 (450)
T TIGR01421 220 EGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEY-QNTNVPGI 298 (450)
T ss_pred cCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCC-CcCCCCCE
Confidence 25666654 7777532 2667788 5689999999999999988653 447888876654434333 45689999
Q ss_pred EEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1005 FILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1005 ~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|++|++... ...+.+..||+.++..+.|.
T Consensus 299 yAiGD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T TIGR01421 299 YALGDVVGKVELTPVAIAAGRKLSERLFNG 328 (450)
T ss_pred EEEEecCCCcccHHHHHHHHHHHHHHHhcC
Confidence 999998754 45689999999999999853
No 47
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.83 E-value=2.6e-20 Score=228.35 Aligned_cols=269 Identities=13% Similarity=0.183 Sum_probs=162.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.+. .++|
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~------------------------------IP~~ 585 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNI------------------------------IPQF 585 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeee------------------------------cccc
Confidence 35799999999999999999999 669999999999999998740 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. ...+++++..++..+.|+ ++++++.|. +.- . ......|| +||||
T Consensus 586 R----------lp~evL~~die~l~~~GV--e~~~gt~Vd-i~l------------e-----~L~~~gYD-----aVILA 630 (1019)
T PRK09853 586 R----------IPAELIQHDIEFVKAHGV--KFEFGCSPD-LTV------------E-----QLKNEGYD-----YVVVA 630 (1019)
T ss_pred c----------ccHHHHHHHHHHHHHcCC--EEEeCceeE-EEh------------h-----hheeccCC-----EEEEC
Confidence 1 112344444455666776 888888772 211 0 01123489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
||.. .|..+++||.....+ ....++.. ++.
T Consensus 631 TGA~-~~~~l~IpG~~~gV~------------------saldfL~~-----------------------~k~-------- 660 (1019)
T PRK09853 631 IGAD-KNGGLKLEGGNQNVI------------------KALPFLEE-----------------------YKN-------- 660 (1019)
T ss_pred cCCC-CCCCCCCCCccCCce------------------ehHHHHHH-----------------------Hhh--------
Confidence 9942 244455655210000 00001000 000
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccc-c-cEEEEccccCC-cccccC-------CC--CeEEcCCceEEcCC
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTE-A-TTVFLSHHSEH-VKKLRF-------PN--NVVKKPDIAELTPT 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~-~-~~V~lv~r~~~-~~~~~~-------~~--~i~~~~~v~~~~~~ 315 (1129)
....+-.|++|+| ||||++|+|+|..+.+. + ++|++++|+.. .++... .. ++.....+.+++++
T Consensus 661 ~~~~~~~GKrVVV----IGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~AleeGVe~~~~~~p~~I~~d 736 (1019)
T PRK09853 661 KGTALKLGKHVVV----VGGGNTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKELLNPESFDAD 736 (1019)
T ss_pred hcccccCCCEEEE----ECCChHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHHHcCCEEEeCCceEEEEcC
Confidence 0001112455555 89999999999988776 4 58999998753 221110 01 23334444555322
Q ss_pred c-e-------------------EEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 316 G-V-------------------RFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 316 ~-v-------------------~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
+ + ...++.++++|.||+|+|++++.+++. ..++..++.+.+.. ...+..+.|++|.+|
T Consensus 737 G~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle-~~GL~ld~~G~I~V-DetlqTs~pgVFAaG 814 (1019)
T PRK09853 737 GTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQVDTELLK-ANGIPLDKKGWPVV-DANGETSLTNVYMIG 814 (1019)
T ss_pred CcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHH-hcCccccCCCCEEe-CCCcccCCCCEEEEe
Confidence 1 1 112234679999999999999999886 35566555443333 222335789999999
Q ss_pred cccccc--ccccccceeeehhhcccc
Q psy12350 376 YTYRYP--FLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 376 ~~~~~~--~~~~~~~~~~~a~~~~~~ 399 (1129)
.....| ...+..||+.+|+++.+.
T Consensus 815 D~a~Gp~tvv~Ai~qGr~AA~nI~~~ 840 (1019)
T PRK09853 815 DVQRGPSTIVAAIADARRAADAILSR 840 (1019)
T ss_pred ccccCchHHHHHHHHHHHHHHHHhhh
Confidence 986433 233448888888877653
No 48
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.83 E-value=2e-20 Score=221.56 Aligned_cols=304 Identities=14% Similarity=0.134 Sum_probs=169.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+||||||||++||.+|++ .|.+|+|+||+ .+||+|.+ .||. |.+......-.....+.. ..|.+
T Consensus 1 ~~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~-~~GG~c~n---~gci----Psk~l~~~a~~~~~~~~~---~~~g~ 67 (458)
T PRK06912 1 SKLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEA-DLGGTCLN---EGCM----PTKSLLESAEVHDKVKKA---NHFGI 67 (458)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECC-cccccCCC---Cccc----cchHHHHHHHHHHHHHHH---HhcCc
Confidence 389999999999999999999 67999999995 59999994 4542 222221111000000100 11111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEece-eeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNK-NVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~-~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
+........+...+.++.++..+++.-.....++. .|+-+.......+..++.+.. ++....+.|| +|||||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~--~~~~~~~~~d-----~lviAT 140 (458)
T PRK06912 68 TLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEY--GDKEEVVDAE-----QFIIAA 140 (458)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEee--CCCcEEEECC-----EEEEeC
Confidence 10000112345566655554444321000111111 111111111112334444443 2222357799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc-
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR- 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~- 247 (1129)
| +.|..|++++.... ... ...+.+....
T Consensus 141 G--s~p~~~p~~~~~~~------------------~v~-------------------------------~~~~~~~~~~~ 169 (458)
T PRK06912 141 G--SEPTELPFAPFDGK------------------WII-------------------------------NSKHAMSLPSI 169 (458)
T ss_pred C--CCCCCCCCCCCCCC------------------eEE-------------------------------cchHHhCcccc
Confidence 9 77877666441100 000 0000000000
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELT 313 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~ 313 (1129)
.++++| ||||++|+|+|..+++.+.+|+++++.+.+++...+ -++..+..|++++
T Consensus 170 ~~~vvI-----------IGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~~~~~V~~i~ 238 (458)
T PRK06912 170 PSSLLI-----------VGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIFTGAALKGLN 238 (458)
T ss_pred CCcEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEEECCEEEEEE
Confidence 133433 899999999999999999999999998877654221 1456677788886
Q ss_pred CCc--eEEc-CCC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc-ccc-cc
Q psy12350 314 PTG--VRFQ-DGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-PFL-HE 385 (1129)
Q Consensus 314 ~~~--v~~~-dg~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-~~~-~~ 385 (1129)
++. +.+. +|+ ++++|.||+|+|.+++.+++. +..++..+++. +...+++ -++.|++|.+|..... +++ .+
T Consensus 239 ~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~~-~ts~~~VyA~GD~~~~~~la~~A 316 (458)
T PRK06912 239 SYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEHM-QTNVPHIYACGDVIGGIQLAHVA 316 (458)
T ss_pred EcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCCe-ecCCCCEEEEeecCCCcccHHHH
Confidence 543 5553 443 579999999999999988753 23445554433 2222222 2468999999987532 221 12
Q ss_pred ccceeeehhhcc
Q psy12350 386 SCGIKVVNKNVQ 397 (1129)
Q Consensus 386 ~~~~~~~a~~~~ 397 (1129)
..|++.+|.++.
T Consensus 317 ~~~g~~aa~~~~ 328 (458)
T PRK06912 317 FHEGTTAALHAS 328 (458)
T ss_pred HHHHHHHHHHHc
Confidence 266666666654
No 49
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.82 E-value=3e-20 Score=231.75 Aligned_cols=288 Identities=17% Similarity=0.210 Sum_probs=184.7
Q ss_pred EEEEcCChHHHHHHHHhhcCC-CCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCC
Q psy12350 12 IGVIGGGAGGLTATKRLTEPG-SGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHK 90 (1129)
Q Consensus 12 V~IIGaG~aGl~aA~~l~~~~-~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~ 90 (1129)
|+|||||+||++||.+|++.+ .+++|+|||+++.++ |. +..++..+..
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~----------------------y~--r~~L~~~l~g------- 49 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN----------------------YN--RILLSSVLQG------- 49 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC----------------------cc--cccccHHHCC-------
Confidence 689999999999999998865 568999999987642 11 0111111100
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEeccc
Q psy12350 91 GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGH 170 (1129)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~ 170 (1129)
..+.+++.....++.++.++ +++++++|+.|++ +.+.+... ......|| +||+|||
T Consensus 50 ------~~~~~~l~~~~~~~~~~~gv--~~~~g~~V~~Id~-----~~k~V~~~-----~g~~~~yD-----~LVlATG- 105 (785)
T TIGR02374 50 ------EADLDDITLNSKDWYEKHGI--TLYTGETVIQIDT-----DQKQVITD-----AGRTLSYD-----KLILATG- 105 (785)
T ss_pred ------CCCHHHccCCCHHHHHHCCC--EEEcCCeEEEEEC-----CCCEEEEC-----CCcEeeCC-----EEEECCC-
Confidence 00122222223344555666 8889999999886 33433321 22457899 9999999
Q ss_pred CCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc-----
Q psy12350 171 VTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE----- 245 (1129)
Q Consensus 171 ~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----- 245 (1129)
+.|..|++||.... + .+.. ++.+++..
T Consensus 106 -s~p~~p~ipG~~~~---~---------------v~~~-----------------------------rt~~d~~~i~~~~ 137 (785)
T TIGR02374 106 -SYPFILPIPGADKK---G---------------VYVF-----------------------------RTIEDLDAIMAMA 137 (785)
T ss_pred -CCcCCCCCCCCCCC---C---------------EEEe-----------------------------CCHHHHHHHHHHh
Confidence 88999999873211 1 0000 11111100
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCce
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIA 310 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~ 310 (1129)
...++++| ||||.+|+|+|..|++.|.+|+++++.+.+++..+.. ++..+..++
T Consensus 138 ~~~k~vvV-----------VGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~ 206 (785)
T TIGR02374 138 QRFKKAAV-----------IGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTV 206 (785)
T ss_pred hcCCeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceE
Confidence 01233433 8999999999999999999999999988776432211 456677788
Q ss_pred EEcCC----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----c
Q psy12350 311 ELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-----P 381 (1129)
Q Consensus 311 ~~~~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-----~ 381 (1129)
++.++ +|.|+||+++++|.||+|+|++++.+++. +.++.++....++.+.+ +++|++|++|..... .
T Consensus 207 ~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~la~-~~gl~~~ggI~Vd~~~~---Ts~p~IyA~GD~a~~~~~~~g 282 (785)
T TIGR02374 207 EIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDELAV-SAGIKVNRGIIVNDSMQ---TSDPDIYAVGECAEHNGRVYG 282 (785)
T ss_pred EEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcHHHH-hcCCccCCCEEECCCcc---cCCCCEEEeeecceeCCcccc
Confidence 88654 37899999999999999999999988765 34455543223333333 578999999987432 1
Q ss_pred c-cccccceeeehhhccccc---------ccccccccccceecCCC
Q psy12350 382 F-LHESCGIKVVNKNVQPLY---------KHLINIEHPSMCIIGIP 417 (1129)
Q Consensus 382 ~-~~~~~~~~~~a~~~~~~~---------~~~~~~~~~~~~~~~~p 417 (1129)
+ +....||+.+|.++.+.- ...+++-+.+++++|.+
T Consensus 283 l~~~a~~qa~vaA~ni~g~~~~~~~~~~~~~~lk~~g~~v~s~G~~ 328 (785)
T TIGR02374 283 LVAPLYEQAKVLADHICGVECEEYEGSDLSAKLKLLGVDVWSAGDA 328 (785)
T ss_pred cHHHHHHHHHHHHHHhcCCCCcCCCCCccceEEEECCcceEecccC
Confidence 1 223478888888887532 22244445556666654
No 50
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.82 E-value=1.1e-19 Score=217.54 Aligned_cols=278 Identities=14% Similarity=0.213 Sum_probs=179.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||||||+||.+|++ .|++|+|+|. .+||+|.... .+. .+..+
T Consensus 211 ~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~--~~GG~~~~~~--------------~~~-----------~~~~~ 261 (515)
T TIGR03140 211 DPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAE--RIGGQVKDTV--------------GIE-----------NLISV 261 (515)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEec--CCCCccccCc--------------Ccc-----------ccccc
Confidence 45899999999999999999999 6799999975 5899987310 011 11111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
......++.+++.++++++++ .++++++|+.++... +.+.+.. .. .....|| +||+|
T Consensus 262 --------~~~~~~~l~~~l~~~l~~~gv--~i~~~~~V~~I~~~~---~~~~v~~---~~--g~~i~~d-----~lIlA 318 (515)
T TIGR03140 262 --------PYTTGSQLAANLEEHIKQYPI--DLMENQRAKKIETED---GLIVVTL---ES--GEVLKAK-----SVIVA 318 (515)
T ss_pred --------CCCCHHHHHHHHHHHHHHhCC--eEEcCCEEEEEEecC---CeEEEEE---CC--CCEEEeC-----EEEEC
Confidence 123456788888888888877 788899999887521 2233322 12 2356788 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||... +.++ +.+... .....+ ..
T Consensus 319 tG--a~~~~~~ipG~~~--~~~~-------------~v~~~~----------------------------~~~~~~--~~ 351 (515)
T TIGR03140 319 TG--ARWRKLGVPGEKE--YIGK-------------GVAYCP----------------------------HCDGPF--FK 351 (515)
T ss_pred CC--CCcCCCCCCCHHH--cCCC-------------eEEEee----------------------------ccChhh--cC
Confidence 99 6677788877321 1110 000000 000011 11
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc---------CCCCeEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR---------FPNNVVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~---------~~~~i~~~~~v~~~~~~--- 315 (1129)
+++++| ||||++|+|+|..|+..+++||++++.+.+.... ..-++..+..++++.++
T Consensus 352 ~k~VvV-----------iGgG~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~~~l~~~~gV~i~~~~~v~~i~~~~~~ 420 (515)
T TIGR03140 352 GKDVAV-----------IGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDK 420 (515)
T ss_pred CCEEEE-----------ECCcHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHHHHHhcCCCCEEEECCeeEEEEcCCCE
Confidence 334444 8999999999999999999999999877653210 11245567778888755
Q ss_pred --ceEEcCC-----CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccc
Q psy12350 316 --GVRFQDG-----SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHE 385 (1129)
Q Consensus 316 --~v~~~dg-----~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~ 385 (1129)
+|.+.++ +++++|.||+|+|.+++.+++.. . +..+.+..+....++ -+++|++|.+|.....| ...+
T Consensus 421 v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l~~-~-~~~~~~G~I~vd~~~-~Ts~p~IyAaGDv~~~~~~~~~~A 497 (515)
T TIGR03140 421 VTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWLKD-A-VELNRRGEIVIDERG-RTSVPGIFAAGDVTTVPYKQIIIA 497 (515)
T ss_pred EEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHHhh-h-cccCCCCeEEECCCC-CCCCCCEEEcccccCCccceEEEE
Confidence 2666543 35799999999999999998864 2 444433322222221 25789999999886532 2333
Q ss_pred ccceeeehhhccc
Q psy12350 386 SCGIKVVNKNVQP 398 (1129)
Q Consensus 386 ~~~~~~~a~~~~~ 398 (1129)
..+|..+|..+..
T Consensus 498 ~~~G~~Aa~~i~~ 510 (515)
T TIGR03140 498 MGEGAKAALSAFD 510 (515)
T ss_pred EccHHHHHHHHHH
Confidence 3666665655443
No 51
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.82 E-value=1.7e-20 Score=218.12 Aligned_cols=258 Identities=14% Similarity=0.180 Sum_probs=156.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+++|+|||||+||++||..|++.+...+|+|+++++... |. +..+++....-..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----------------------y~--r~~l~~~~~~~~~-- 56 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----------------------YE--RPPLSKSMLLEDS-- 56 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----------------------CC--CCCCCHHHHCCCC--
Confidence 468999999999999999999977777999999976421 11 1112221111000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
. ...+... .++..+.++ .++.++.|..+++ +...+... ......|| +|||||
T Consensus 57 -~---~~~~~~~-------~~~~~~~~i--~~~~g~~V~~id~-----~~~~v~~~-----~g~~~~yd-----~LViAT 108 (396)
T PRK09754 57 -P---QLQQVLP-------ANWWQENNV--HLHSGVTIKTLGR-----DTRELVLT-----NGESWHWD-----QLFIAT 108 (396)
T ss_pred -c---cccccCC-------HHHHHHCCC--EEEcCCEEEEEEC-----CCCEEEEC-----CCCEEEcC-----EEEEcc
Confidence 0 0001111 122233455 7788888988876 22333221 12357899 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|+.|++++.... +.+.... .+.+....+.+ ...
T Consensus 109 G--s~~~~~p~~~~~~~------------------~v~~~~~----------------------~~da~~l~~~~--~~~ 144 (396)
T PRK09754 109 G--AAARPLPLLDALGE------------------RCFTLRH----------------------AGDAARLREVL--QPE 144 (396)
T ss_pred C--CCCCCCCCCCcCCC------------------CEEecCC----------------------HHHHHHHHHHh--hcC
Confidence 9 77776665431100 0000000 00000000011 012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELT 313 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~ 313 (1129)
++++ | ||+|++|+|+|..|++.|.+||++++.+.+++...+. ++..+..|++++
T Consensus 145 ~~vv-------V----iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 213 (396)
T PRK09754 145 RSVV-------I----VGAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVV 213 (396)
T ss_pred CeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEE
Confidence 3333 3 8999999999999999999999999988765432211 455677888886
Q ss_pred CCc---eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 314 PTG---VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 314 ~~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
+++ +.+.+|+++++|.||+|+|.+++..++. ..++..+....++-|.+ +++|++|.+|....
T Consensus 214 ~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~l~~-~~gl~~~~gi~vd~~~~---ts~~~IyA~GD~a~ 278 (396)
T PRK09754 214 DGEKVELTLQSGETLQADVVIYGIGISANDQLAR-EANLDTANGIVIDEACR---TCDPAIFAGGDVAI 278 (396)
T ss_pred cCCEEEEEECCCCEEECCEEEECCCCChhhHHHH-hcCCCcCCCEEECCCCc---cCCCCEEEccceEe
Confidence 532 5778999999999999999999987764 34444432222222222 46888999988753
No 52
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.82 E-value=4.6e-20 Score=231.14 Aligned_cols=282 Identities=17% Similarity=0.182 Sum_probs=170.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.| ..++
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~y------------------------------GIP~- 351 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRY------------------------------GIPE- 351 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEc------------------------------cCCC-
Confidence 35899999999999999999999 67999999999999999985 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
|....++.+...+..+..|+ .+++|+.|.. .+++.+ .....|| +||||
T Consensus 352 ---------~rlp~~vi~~~i~~l~~~Gv--~f~~n~~vG~-----------dit~~~-----l~~~~yD-----AV~LA 399 (944)
T PRK12779 352 ---------FRLPNQLIDDVVEKIKLLGG--RFVKNFVVGK-----------TATLED-----LKAAGFW-----KIFVG 399 (944)
T ss_pred ---------CcChHHHHHHHHHHHHhhcC--eEEEeEEecc-----------EEeHHH-----hccccCC-----EEEEe
Confidence 12223556655566677776 7787776621 111111 1123599 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. ..|+.++|||.. .. |.++. .|+.....+. .....+.
T Consensus 400 tGA-~~pr~l~IpG~d---l~---------------GV~~a~dfL~~~~~~~-------------------~~~~~~~-- 439 (944)
T PRK12779 400 TGA-GLPTFMNVPGEH---LL---------------GVMSANEFLTRVNLMR-------------------GLDDDYE-- 439 (944)
T ss_pred CCC-CCCCcCCCCCCc---Cc---------------CcEEHHHHHHHHHhhc-------------------ccccccc--
Confidence 994 258888888732 11 22211 1211100000 0000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCc-cccc-------CCC--CeEEcCCceEEcCC-
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHV-KKLR-------FPN--NVVKKPDIAELTPT- 315 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~-~~~~-------~~~--~i~~~~~v~~~~~~- 315 (1129)
.......||+|+| ||||++|+|+|..+.+.|.+|++++|++.. .+.. ..+ ++.....++++.++
T Consensus 440 -~~~~~~~Gk~VvV----IGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a~eeGV~~~~~~~p~~i~~d~ 514 (944)
T PRK12779 440 -TPLPEVKGKEVFV----IGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAVLRAPREFIGDD 514 (944)
T ss_pred -ccccccCCCEEEE----ECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHHHHCCCEEEeCcceEEEEecC
Confidence 0000012444455 899999999999999999999999987531 1100 011 33344555666321
Q ss_pred -c--e---EE-----------------cCCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCC
Q psy12350 316 -G--V---RF-----------------QDGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 316 -~--v---~~-----------------~dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
+ | .+ .+|+ ++++|.||+|+|++++..+.....++..+.++.+......+.++.|+
T Consensus 515 ~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pg 594 (944)
T PRK12779 515 HTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKG 594 (944)
T ss_pred CCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCC
Confidence 1 1 11 1233 47999999999999986543333456665544333333334468899
Q ss_pred eEEeccccccc--ccccccceeeehhhcccc
Q psy12350 371 MCIIGYTYRYP--FLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 371 l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~ 399 (1129)
+|++|.....+ ...+..+++.+|..+...
T Consensus 595 VFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~ 625 (944)
T PRK12779 595 VYSGGDAARGGSTAIRAAGDGQAAAKEIVGE 625 (944)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999986543 233447777777777643
No 53
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.82 E-value=3e-20 Score=223.34 Aligned_cols=308 Identities=17% Similarity=0.166 Sum_probs=175.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CCcCceEecCCCCCCCCCCCCccCcccccccccCCccc-----c
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEI-----M 82 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~-----~ 82 (1129)
.+||+||||||+|++||..+++ .|.+|+|+|+. ..+||+|.+ .||. |.+...+..-.....+.. +
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~~~~lGGtCvn---~GCi----PsK~l~~~a~~~~~~~~~~~~~~~ 186 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGDDDSIGGTCVN---VGCI----PSKALLYATGKYRELKNLAKLYTY 186 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCccccceeE---eCCc----chHHHHHHHHHHHHHHhccccccC
Confidence 5799999999999999999999 67999999974 479999994 5553 333322222111111111 1
Q ss_pred ccC--CCC------CCC-CC--CCCCCCHHHHHHHHHHHHHhcC--Ccce-----eEecee-eeeeccccccCCCCceEE
Q psy12350 83 ELS--GYH------HKG-HP--DKSYIAANDVLEYLNDFADNFN--LRNL-----CLVNKN-VQPLYKHLINIEHPSMCI 143 (1129)
Q Consensus 83 ~~~--d~~------~~~-~~--~~~~~~~~~~~~yl~~~~~~~~--~~~~-----i~~~~~-V~~v~~~~~~~~~~~~~~ 143 (1129)
... .|| .+. .+ ...-++...+.++.+...+++. +... +..+++ |+-+...+...+..++.+
T Consensus 187 Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v 266 (659)
T PTZ00153 187 GIYTNAFKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKS 266 (659)
T ss_pred CeeeccccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEE
Confidence 110 010 000 00 1112367777887777666542 1100 111112 322222222223344433
Q ss_pred eccccCccceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCC
Q psy12350 144 IGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESP 223 (1129)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (1129)
. . ......|| +|||||| +.|..|++++.. + ....
T Consensus 267 ~---~-~g~~i~ad-----~lIIATG--S~P~~P~~~~~~-----~-------------~~V~----------------- 300 (659)
T PTZ00153 267 E---K-SGKEFKVK-----NIIIATG--STPNIPDNIEVD-----Q-------------KSVF----------------- 300 (659)
T ss_pred c---c-CCEEEECC-----EEEEcCC--CCCCCCCCCCCC-----C-------------CcEE-----------------
Confidence 2 1 12356788 9999999 888888653310 0 0000
Q ss_pred CCccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---
Q psy12350 224 VPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--- 300 (1129)
Q Consensus 224 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--- 300 (1129)
...+.+.... ++++++| ||||++|+|+|..++..|++||++++.+.+++..++
T Consensus 301 --------------ts~d~~~l~~------lpk~VvI----VGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis 356 (659)
T PTZ00153 301 --------------TSDTAVKLEG------LQNYMGI----VGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVA 356 (659)
T ss_pred --------------ehHHhhhhhh------cCCceEE----ECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHH
Confidence 0000000000 1223333 899999999999999999999999999877653222
Q ss_pred ----------C--CeEEcCCceEEcCCc----eEE--cC-------C--------CEeecCEEEEcccccccCCCCC-CC
Q psy12350 301 ----------N--NVVKKPDIAELTPTG----VRF--QD-------G--------SYEQVDIILYCTGYTYRYPFLH-ES 346 (1129)
Q Consensus 301 ----------~--~i~~~~~v~~~~~~~----v~~--~d-------g--------~~~~~D~VI~atG~~~~~~~l~-~~ 346 (1129)
. ++..+..|++++++. |.+ .+ + +++++|.||+|||.+|+..+|. +.
T Consensus 357 ~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~ 436 (659)
T PTZ00153 357 KYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDK 436 (659)
T ss_pred HHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchh
Confidence 1 344566677886431 332 21 1 2689999999999999998864 23
Q ss_pred CCeEeecCcc--ccccccccc---CCCCCeEEeccccc----ccccccccceeeehhhccc
Q psy12350 347 CGIKVVNKNV--QPLYKHLIN---IEHPSMCIIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 347 ~~~~~~~~~~--~~l~~~~~~---~~~p~l~~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.++..+. .. ++-|.++-. ...|++|.+|.... ++.+. .||+.+|.++.+
T Consensus 437 ~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~--~qg~~aa~ni~g 494 (659)
T PTZ00153 437 LKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTAS--HQALKVVDWIEG 494 (659)
T ss_pred cCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHH--HHHHHHHHHHcC
Confidence 4444432 22 233333321 11578999988743 23344 788888888865
No 54
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.82 E-value=5.7e-20 Score=216.17 Aligned_cols=277 Identities=15% Similarity=0.180 Sum_probs=164.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.|. ++++
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~g------------------------------ip~~ 179 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYG------------------------------IPEF 179 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeec------------------------------CCCc
Confidence 35899999999999999999999 679999999999999998741 0111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. ...++.+...+...+.++ .+++++.|. + .+++ .. ....|| +||||
T Consensus 180 ~----------~~~~~~~~~~~~l~~~gv--~~~~~~~v~---~--------~v~~---~~---~~~~yd-----~viiA 225 (449)
T TIGR01316 180 R----------LPKEIVVTEIKTLKKLGV--TFRMNFLVG---K--------TATL---EE---LFSQYD-----AVFIG 225 (449)
T ss_pred c----------CCHHHHHHHHHHHHhCCc--EEEeCCccC---C--------cCCH---HH---HHhhCC-----EEEEe
Confidence 0 112444444455556665 677776541 1 1111 11 112489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. +.|..|++||.. ..| .+. ..++.... ....+..+..
T Consensus 226 tGa-~~p~~~~ipG~~---~~g---------------v~~~~~~l~~~~-----------------~~~~~~~~~~---- 265 (449)
T TIGR01316 226 TGA-GLPKLMNIPGEE---LCG---------------VYSANDFLTRAN-----------------LMKAYEFPHA---- 265 (449)
T ss_pred CCC-CCCCcCCCCCCC---CCC---------------cEEHHHHHHHHh-----------------hccccccccc----
Confidence 993 268888887732 111 111 11100000 0000000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC--------CC--CeEEcCCceEEcC--
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF--------PN--NVVKKPDIAELTP-- 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~--------~~--~i~~~~~v~~~~~-- 314 (1129)
......|++|+| ||||++|+|+|..+++.|.+||+++|++....... .. ++.....+.++.+
T Consensus 266 --~~~~~~gk~VvV----IGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~~~~~~i~~~~ 339 (449)
T TIGR01316 266 --DTPVYAGKSVVV----IGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFLCQPVEIIGDE 339 (449)
T ss_pred --CCcccCCCeEEE----ECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEeccCcEEEEEcC
Confidence 000112444455 89999999999999999999999998764211000 11 3445566677642
Q ss_pred C----ceEEc---------CC-----------CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCC
Q psy12350 315 T----GVRFQ---------DG-----------SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 315 ~----~v~~~---------dg-----------~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
+ +|.+. +| .++++|.||+|+|++++..++. ..++..+.+..+..... +-++.|+
T Consensus 340 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~-~~gl~~~~~G~i~vd~~-~~Ts~~~ 417 (449)
T TIGR01316 340 EGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAE-TTRLKTSERGTIVVDED-QRTSIPG 417 (449)
T ss_pred CCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhh-ccCcccCCCCeEEeCCC-CccCCCC
Confidence 2 13442 23 2579999999999999988776 34555554332222121 2357899
Q ss_pred eEEecccccccc--cccccceeeehhhccc
Q psy12350 371 MCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 371 l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
+|.+|.....|. ..+..||+.+|.++..
T Consensus 418 VfA~GD~~~g~~~v~~Ai~~G~~AA~~I~~ 447 (449)
T TIGR01316 418 VFAGGDIILGAATVIRAMGQGKRAAKSINE 447 (449)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 999998853321 2334777777776643
No 55
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.82 E-value=6e-20 Score=217.54 Aligned_cols=301 Identities=13% Similarity=0.143 Sum_probs=171.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+||||||+|+.||..+++ .|.+|+|+||+ .+||+|.+ .+|. |.+..++..-.....+ ..+.+.+
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~-~~gG~c~~---~gci----PsK~l~~~a~~~~~~~---~~~~~g~ 68 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERD-GLGGAAVL---TDCV----PSKTLIATAEVRTELR---RAAELGI 68 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEcc-CCCCcccc---cCCc----chHHHHHHHHHHHHHH---HHHhCCc
Confidence 589999999999999999999 66999999995 59999994 4442 2222221110000001 1111111
Q ss_pred CCC-CCCCCCCHHHHHHHHHHH-----------HHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 90 KGH-PDKSYIAANDVLEYLNDF-----------ADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 90 ~~~-~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
... +.....+...+.+++++. .++.++ +++.++ ++.++. ..+..++.+.. .++......||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV--~~~~g~-~~~~~~---~~~~~~v~V~~-~~g~~~~~~~d 141 (466)
T PRK07845 69 RFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGV--RVIAGR-GRLIDP---GLGPHRVKVTT-ADGGEETLDAD 141 (466)
T ss_pred ccccCcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEEE-EEEeec---ccCCCEEEEEe-CCCceEEEecC
Confidence 000 000112334444444333 233333 444332 222110 01233444432 12222356788
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|++++..... .+.. ...+
T Consensus 142 -----~lViATG--s~p~~~p~~~~~~~~------------------v~~~-------------------------~~~~ 171 (466)
T PRK07845 142 -----VVLIATG--ASPRILPTAEPDGER------------------ILTW-------------------------RQLY 171 (466)
T ss_pred -----EEEEcCC--CCCCCCCCCCCCCce------------------EEee-------------------------hhhh
Confidence 9999999 778766543210000 0000 0000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------Ce
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i 303 (1129)
. .+.+ .++++ | ||+|++|+|+|..|++.|.+||++++.+.+++...++ ++
T Consensus 172 ~-~~~~----~~~vv-------V----IGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~gV~i 235 (466)
T PRK07845 172 D-LDEL----PEHLI-------V----VGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARRGMTV 235 (466)
T ss_pred c-cccc----CCeEE-------E----ECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHCCcEE
Confidence 0 0011 12333 3 8999999999999999999999999988776543321 34
Q ss_pred EEcCCceEEcC--Cc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 304 VKKPDIAELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 304 ~~~~~v~~~~~--~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..+..|+++++ ++ +.+.+|+++++|.||+|+|++++...|. +..++.++++..+...+++ -++.|++|++|...
T Consensus 236 ~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~-~Ts~~~IyA~GD~~ 314 (466)
T PRK07845 236 LKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVS-RTSVPGIYAAGDCT 314 (466)
T ss_pred EcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCc-ccCCCCEEEEeecc
Confidence 55667888853 33 5667898999999999999999988642 2456776655433333332 25789999999875
Q ss_pred cc-cc-cccccceeeehhhcc
Q psy12350 379 RY-PF-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 379 ~~-~~-~~~~~~~~~~a~~~~ 397 (1129)
.. ++ ..+..|++.+|.++.
T Consensus 315 ~~~~l~~~A~~~g~~aa~~i~ 335 (466)
T PRK07845 315 GVLPLASVAAMQGRIAMYHAL 335 (466)
T ss_pred CCccchhHHHHHHHHHHHHHc
Confidence 32 22 112267766666655
No 56
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=2.5e-19 Score=195.70 Aligned_cols=258 Identities=18% Similarity=0.271 Sum_probs=172.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCce-EEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFT-CTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~-v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+|||||||||+||.++.+ .+.+ ++|+|+ ..+||....+. .+-.|+.|
T Consensus 3 ~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~-~~~gg~~~~~~-------------------------~venypg~ 54 (305)
T COG0492 3 IYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEG-GEPGGQLTKTT-------------------------DVENYPGF 54 (305)
T ss_pred eeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEec-CCcCCccccce-------------------------eecCCCCC
Confidence 4899999999999999999999 6688 666666 66776655211 23344443
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+. -.+..++.+.++.++..++. ++.. ..|.+++... + .+.+.+ +.. .+..+ +||||
T Consensus 55 ~~-------~~~g~~L~~~~~~~a~~~~~--~~~~-~~v~~v~~~~---~--~F~v~t---~~~-~~~ak-----~vIiA 110 (305)
T COG0492 55 PG-------GILGPELMEQMKEQAEKFGV--EIVE-DEVEKVELEG---G--PFKVKT---DKG-TYEAK-----AVIIA 110 (305)
T ss_pred cc-------CCchHHHHHHHHHHHhhcCe--EEEE-EEEEEEeecC---c--eEEEEE---CCC-eEEEe-----EEEEC
Confidence 31 23567888888999998876 4444 6677776521 1 233332 111 14445 89999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| ..++.|.+||.. .+.|+ +.+. |. .+... ++
T Consensus 111 tG--~~~~~~~~~~e~--e~~g~-------------gv~y-------c~---------------------~cdg~---~~ 142 (305)
T COG0492 111 TG--AGARKLGVPGEE--EFEGK-------------GVSY-------CA---------------------TCDGF---FK 142 (305)
T ss_pred cC--CcccCCCCCcch--hhcCC-------------ceEE-------ee---------------------ecCcc---cc
Confidence 99 777888777532 34332 1110 10 22222 34
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc--------C-CCCeEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR--------F-PNNVVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~--------~-~~~i~~~~~v~~~~~~--- 315 (1129)
+++++| ||||.||+|.|..|++.+++||+++|++.+.... . .-.+..+..|.++.++
T Consensus 143 ~k~v~V-----------iGgG~sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~v~ 211 (305)
T COG0492 143 GKDVVV-----------IGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVE 211 (305)
T ss_pred CCeEEE-----------EcCCHHHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCccc
Confidence 566665 7999999999999999999999999998765421 1 1134567789999884
Q ss_pred ceEEcCC--C--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 316 GVRFQDG--S--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 316 ~v~~~dg--~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
+|.+++. + ++++|.|+++.|+.++..|+.. ..+ .+++.....-.. ..++.|++|.+|.....
T Consensus 212 ~v~l~~~~~~~~~~~~~gvf~~iG~~p~~~~~~~-~~~-~~~~g~I~v~~~-~~TsvpGifAaGDv~~~ 277 (305)
T COG0492 212 GVVLKNVKGEEKELPVDGVFIAIGHLPNTELLKG-LGV-LDENGYIVVDEE-METSVPGIFAAGDVADK 277 (305)
T ss_pred eEEEEecCCceEEEEeceEEEecCCCCchHHHhh-ccc-cCCCCcEEcCCC-cccCCCCEEEeEeeccC
Confidence 5888874 2 4699999999999999999874 222 333333222222 44789999999988644
No 57
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.82 E-value=3.8e-20 Score=229.86 Aligned_cols=252 Identities=18% Similarity=0.286 Sum_probs=165.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCC--CCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPG--SGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~--~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
++|+|||||+||+.+|..|++.+ .+++|+||++++.++ |.. ..++..+..
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----------------------Y~r--~~L~~~~~~---- 55 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----------------------YDR--VHLSSYFSH---- 55 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----------------------ccC--CcchHhHcC----
Confidence 58999999999999999998643 468999999987531 211 111111100
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
...+++.....++.++.++ .++.+++|+.+++. ...+.. .....+.|| +||||
T Consensus 56 ----------~~~~~l~~~~~~~~~~~gI--~~~~g~~V~~Id~~-----~~~V~~-----~~G~~i~yD-----~LVIA 108 (847)
T PRK14989 56 ----------HTAEELSLVREGFYEKHGI--KVLVGERAITINRQ-----EKVIHS-----SAGRTVFYD-----KLIMA 108 (847)
T ss_pred ----------CCHHHccCCCHHHHHhCCC--EEEcCCEEEEEeCC-----CcEEEE-----CCCcEEECC-----EEEEC
Confidence 0122333333444556666 78889999988762 222221 122457899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc--
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE-- 245 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-- 245 (1129)
|| +.|..|++||.....+ +.. +..+++..
T Consensus 109 TG--s~p~~p~ipG~~~~~v------------------~~~-----------------------------rt~~d~~~l~ 139 (847)
T PRK14989 109 TG--SYPWIPPIKGSETQDC------------------FVY-----------------------------RTIEDLNAIE 139 (847)
T ss_pred CC--CCcCCCCCCCCCCCCe------------------EEE-----------------------------CCHHHHHHHH
Confidence 99 8899998887321100 000 11111110
Q ss_pred ---ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcC
Q psy12350 246 ---FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKP 307 (1129)
Q Consensus 246 ---~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~ 307 (1129)
...++++| ||||.+|+|+|..|++.|.+|+++++.+.+++..+.. ++..+.
T Consensus 140 ~~~~~~k~vvV-----------IGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~ 208 (847)
T PRK14989 140 ACARRSKRGAV-----------VGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSK 208 (847)
T ss_pred HHHhcCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCC
Confidence 01233333 8999999999999999999999999998876532211 456677
Q ss_pred CceEEcCC------ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 308 DIAELTPT------GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 308 ~v~~~~~~------~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
.++++.++ .+.++||+++++|.||+|+|.+|+..++. ..++.++++..+....++. +++|++|.+|...
T Consensus 209 ~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~-~~Gl~~~~~G~I~VD~~l~-Ts~p~IYAiGD~a 283 (847)
T PRK14989 209 NTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDKLAT-QCGLAVAPRGGIVINDSCQ-TSDPDIYAIGECA 283 (847)
T ss_pred eEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCchHHh-hcCccCCCCCcEEECCCCc-CCCCCEEEeecce
Confidence 78888532 37789999999999999999999988765 4556665543333323322 5789999999875
No 58
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.81 E-value=8.9e-20 Score=214.97 Aligned_cols=299 Identities=16% Similarity=0.150 Sum_probs=173.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||+|..||..+ .|.+|+|+|+ +.+||+|. +.||. |.+...+..-.....+ ....|.
T Consensus 2 ~yD~vvIG~G~~g~~aa~~~----~g~~V~lie~-~~~GGtC~---n~GCi----PsK~l~~~a~~~~~~~---~~~~~g 66 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDPRF----ADKRIAIVEK-GTFGGTCL---NVGCI----PTKMFVYAAEVAQSIG---ESARLG 66 (452)
T ss_pred CcCEEEECCCHHHHHHHHHH----CCCeEEEEeC-CCCCCeee---ccCcc----chHHHHHHHHHHHHHH---HhhccC
Confidence 48999999999999986543 4689999998 66999999 45553 3333222211111111 111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHH-HHHhcC-CcceeEec---eeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 89 HKGHPDKSYIAANDVLEYLND-FADNFN-LRNLCLVN---KNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~-~~~~~~-~~~~i~~~---~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
+.. ...-++..++.++... ..+... .....+++ ..|+-+.......+.+++.+. + ...+.|| +
T Consensus 67 ~~~--~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~---~--g~~~~~d-----~ 134 (452)
T TIGR03452 67 IDA--EIDSVRWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTG---D--GEEITGD-----Q 134 (452)
T ss_pred eeC--CCCccCHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEEC---C--CcEEEeC-----E
Confidence 110 0012355666666544 222211 00011110 123222222222344545442 1 2346789 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
|||||| +.|..|++++.. + ..... . .....+
T Consensus 135 lIiATG--s~p~~p~~~~~~-----~---------------~~~~~-----------------------~----~~~~~l 165 (452)
T TIGR03452 135 IVIAAG--SRPYIPPAIADS-----G---------------VRYHT-----------------------N----EDIMRL 165 (452)
T ss_pred EEEEEC--CCCCCCCCCCCC-----C---------------CEEEc-----------------------H----HHHHhh
Confidence 999999 888877642200 0 00000 0 000001
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC-------------CeEEcCCce
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------NVVKKPDIA 310 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------~i~~~~~v~ 310 (1129)
. ...++++| ||+|++|+|+|..|++.|.+|+++++.+.+++...++ ++..+..|+
T Consensus 166 ~-~~~k~vvV-----------IGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~~~gI~i~~~~~V~ 233 (452)
T TIGR03452 166 P-ELPESLVI-----------VGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIAKKKWDIRLGRNVT 233 (452)
T ss_pred h-hcCCcEEE-----------ECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHHhcCCEEEeCCEEE
Confidence 0 01233333 8999999999999999999999999988765432211 345567788
Q ss_pred EEcC--Cc--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc----c
Q psy12350 311 ELTP--TG--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----P 381 (1129)
Q Consensus 311 ~~~~--~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----~ 381 (1129)
+++. ++ +.+.+|+++++|.||+|+|.+++..+|. +..++..+++..+....++- ++.|++|++|..... +
T Consensus 234 ~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~-Ts~~~IyA~GD~~~~~~l~~ 312 (452)
T TIGR03452 234 AVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYGR-TSARGVWALGDVSSPYQLKH 312 (452)
T ss_pred EEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCcc-cCCCCEEEeecccCcccChh
Confidence 8863 33 5566888899999999999999999865 34567776554444333333 689999999987532 2
Q ss_pred ccccccceeeehhhccc
Q psy12350 382 FLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~~ 398 (1129)
.+. .|++.+|.++.+
T Consensus 313 ~A~--~~g~~~a~ni~~ 327 (452)
T TIGR03452 313 VAN--AEARVVKHNLLH 327 (452)
T ss_pred HHH--HHHHHHHHHhcC
Confidence 244 788888887764
No 59
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.81 E-value=7.1e-20 Score=216.80 Aligned_cols=278 Identities=16% Similarity=0.153 Sum_probs=171.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .+++|+|||+.+.+||.+.+. .+.
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~g------------------------------ip~- 185 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYG------------------------------IPE- 185 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeecc------------------------------CCC-
Confidence 45899999999999999999999 669999999999999988740 000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+....++.++..++.+++++ .+++++.|... +++ .. ....|| +||+|
T Consensus 186 ---------~~~~~~~~~~~~~~l~~~gv--~~~~~~~v~~~-----------v~~---~~---~~~~~d-----~vvlA 232 (457)
T PRK11749 186 ---------FRLPKDIVDREVERLLKLGV--EIRTNTEVGRD-----------ITL---DE---LRAGYD-----AVFIG 232 (457)
T ss_pred ---------ccCCHHHHHHHHHHHHHcCC--EEEeCCEECCc-----------cCH---HH---HHhhCC-----EEEEc
Confidence 11123566666666777776 77777765210 000 11 114589 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||.. .|..+++||... .| ... ..++.... .......+ .
T Consensus 233 tGa~-~~~~~~i~G~~~---~g---------------v~~~~~~l~~~~--------------------~~~~~~~~--~ 271 (457)
T PRK11749 233 TGAG-LPRFLGIPGENL---GG---------------VYSAVDFLTRVN--------------------QAVADYDL--P 271 (457)
T ss_pred cCCC-CCCCCCCCCccC---CC---------------cEEHHHHHHHHh--------------------hccccccC--C
Confidence 9942 366666766321 11 111 01100000 00000011 1
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhccccc-EEEEccccCCc-cccc---------CCCCeEEcCCceEEcCC
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-TVFLSHHSEHV-KKLR---------FPNNVVKKPDIAELTPT 315 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-~V~lv~r~~~~-~~~~---------~~~~i~~~~~v~~~~~~ 315 (1129)
. |++|+| ||||++|+|+|..+++.|. +|++++|++.. ++.. ..-++.....+.++.++
T Consensus 272 ~-------g~~VvV----iGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~v~~i~~~ 340 (457)
T PRK11749 272 V-------GKRVVV----IGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGD 340 (457)
T ss_pred C-------CCeEEE----ECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHCCCEEEecCCcEEEEec
Confidence 1 334444 8999999999999999886 89999986532 1110 11145556777777543
Q ss_pred c-----eEEc-------------------CCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCe
Q psy12350 316 G-----VRFQ-------------------DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 316 ~-----v~~~-------------------dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
+ |.+. +++++++|.||+|+|++++..++....++..+.+..+........++.|++
T Consensus 341 ~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~V 420 (457)
T PRK11749 341 EGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGV 420 (457)
T ss_pred CCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCE
Confidence 2 5542 223679999999999999977765444455544433332222233578999
Q ss_pred EEeccccccc--ccccccceeeehhhcccccccc
Q psy12350 372 CIIGYTYRYP--FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 372 ~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
|.+|.....+ ...+..||+.+|.++...+.++
T Consensus 421 fA~GD~~~~~~~~~~A~~~G~~aA~~I~~~l~g~ 454 (457)
T PRK11749 421 FAGGDIVTGAATVVWAVGDGKDAAEAIHEYLEGA 454 (457)
T ss_pred EEeCCcCCCchHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999875332 2234488888888877666553
No 60
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.81 E-value=2.4e-19 Score=216.18 Aligned_cols=282 Identities=16% Similarity=0.231 Sum_probs=181.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||||||+||.+|++ .+++|+|||++ .+||+|.... ....++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~-~~GG~~~~~~-------------------------~i~~~pg- 53 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKD-DFGGQITITS-------------------------EVVNYPG- 53 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecC-CCCceEEecc-------------------------ccccCCC-
Confidence 34899999999999999999999 67999999994 7999987310 0011111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
....+..++.++++..++++++ .+ .+++|+.++.. .....+.+ .. ....+| +||+|
T Consensus 54 -------~~~~~~~~l~~~l~~~~~~~gv--~~-~~~~V~~i~~~-----~~~~~V~~-~~---g~~~a~-----~lVlA 109 (555)
T TIGR03143 54 -------ILNTTGPELMQEMRQQAQDFGV--KF-LQAEVLDVDFD-----GDIKTIKT-AR---GDYKTL-----AVLIA 109 (555)
T ss_pred -------CcCCCHHHHHHHHHHHHHHcCC--EE-eccEEEEEEec-----CCEEEEEe-cC---CEEEEe-----EEEEC
Confidence 1123556888999999998876 44 36788877642 11112222 11 235677 89999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||... +.+. +.+... .....+ ..
T Consensus 110 TG--a~p~~~~ipG~~~--~~~~-------------~v~~~~----------------------------~~~~~~--~~ 142 (555)
T TIGR03143 110 TG--ASPRKLGFPGEEE--FTGR-------------GVAYCA----------------------------TCDGEF--FT 142 (555)
T ss_pred CC--CccCCCCCCCHHH--hCCc-------------eEEEEe----------------------------ecChhh--cC
Confidence 99 7888898887421 1110 000000 000011 12
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc--------c-CCCCeEEcCCceEEcCCc--
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL--------R-FPNNVVKKPDIAELTPTG-- 316 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~--------~-~~~~i~~~~~v~~~~~~~-- 316 (1129)
+++++| ||||++|+|+|..|++.+++|++++|.+.+... . ..-++..+..|+++.+++
T Consensus 143 g~~VvV-----------IGgG~~g~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~~v 211 (555)
T TIGR03143 143 GMDVFV-----------IGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDDGL 211 (555)
T ss_pred CCEEEE-----------ECCCHHHHHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEcCCcE
Confidence 344444 899999999999999999999999998754211 0 112456677888887653
Q ss_pred --eEE---cCCCEe----ecCE----EEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc---c
Q psy12350 317 --VRF---QDGSYE----QVDI----ILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR---Y 380 (1129)
Q Consensus 317 --v~~---~dg~~~----~~D~----VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~---~ 380 (1129)
+.+ .+|++. ++|. ||+|+|++++..++.. .+..+++..+....+ +..+.|++|.+|.... .
T Consensus 212 ~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~--~l~l~~~G~I~vd~~-~~Ts~p~IyAaGDv~~~~~~ 288 (555)
T TIGR03143 212 RYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSELFKG--VVELDKRGYIPTNED-METNVPGVYAAGDLRPKELR 288 (555)
T ss_pred EEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhHHhh--hcccCCCCeEEeCCc-cccCCCCEEEceeccCCCcc
Confidence 233 356543 3666 9999999999998764 244444332222222 2247899999999742 1
Q ss_pred cccccccceeeehhhcccccccc
Q psy12350 381 PFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 381 ~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
++..+..||+.+|.++...+.+.
T Consensus 289 ~v~~A~~~G~~Aa~~i~~~l~~~ 311 (555)
T TIGR03143 289 QVVTAVADGAIAATSAERYVKEL 311 (555)
T ss_pred hheeHHhhHHHHHHHHHHHHHhh
Confidence 33445588989888887766544
No 61
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.81 E-value=1.2e-19 Score=214.41 Aligned_cols=269 Identities=16% Similarity=0.193 Sum_probs=158.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC-CcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD-NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~-~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+||||||||++||.+|++ .+.+|+|+|+.+ .+||+|.+ .+|. |.+...+.. .. ..+|
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~---~gci----p~k~l~~~~-~~--------~~~~ 64 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCIN---IGCI----PTKTLVHDA-QQ--------HTDF 64 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEee---cccc----chHHHHHHh-cc--------CCCH
Confidence 4899999999999999999999 669999999976 58999983 3431 111111111 00 0011
Q ss_pred CCCCCCCCCCCCHHHHHHHHHH-----HHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeee
Q psy12350 88 HHKGHPDKSYIAANDVLEYLND-----FADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRF 162 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~-----~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 162 (1129)
+ ......+++.++++. ..+..++ .+..+ ++..++. ..+.+.+ .+....+.||
T Consensus 65 ~------~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~~-------~~~~v~~--~~g~~~~~~d----- 121 (441)
T PRK08010 65 V------RAIQRKNEVVNFLRNKNFHNLADMPNI--DVIDG-QAEFINN-------HSLRVHR--PEGNLEIHGE----- 121 (441)
T ss_pred H------HHHHHHHHHHHHHHHhHHHHHhhcCCc--EEEEE-EEEEecC-------CEEEEEe--CCCeEEEEeC-----
Confidence 0 001112233344322 1111122 33322 3433332 2333332 1112246789
Q ss_pred EEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccc
Q psy12350 163 FLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSED 242 (1129)
Q Consensus 163 ~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~ 242 (1129)
+||+||| +.|..|++||... ..+ ..... ....
T Consensus 122 ~lviATG--s~p~~p~i~G~~~--~~~---------------v~~~~-----------------------------~~~~ 153 (441)
T PRK08010 122 KIFINTG--AQTVVPPIPGITT--TPG---------------VYDST-----------------------------GLLN 153 (441)
T ss_pred EEEEcCC--CcCCCCCCCCccC--CCC---------------EEChh-----------------------------Hhhc
Confidence 9999999 8888888877311 001 00000 0000
Q ss_pred cccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCC
Q psy12350 243 FTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPD 308 (1129)
Q Consensus 243 ~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~ 308 (1129)
+. ...++++| ||+|++|+|+|..|++.|.+|+++++++.+++...++ ++..+..
T Consensus 154 ~~-~~~~~v~V-----------iGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~ 221 (441)
T PRK08010 154 LK-ELPGHLGI-----------LGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAH 221 (441)
T ss_pred cc-ccCCeEEE-----------ECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCE
Confidence 10 01233333 8999999999999999999999999988776543221 3455677
Q ss_pred ceEEcCC--ceEEc-CCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 309 IAELTPT--GVRFQ-DGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 309 v~~~~~~--~v~~~-dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
|++++++ ++.+. ++.++++|.||+|+|.+++..++. ...++..+++..+....++ .++.|++|.+|....
T Consensus 222 v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~~IyA~GD~~~ 295 (441)
T PRK08010 222 VERISHHENQVQVHSEHAQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYL-HTTADNIWAMGDVTG 295 (441)
T ss_pred EEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCc-ccCCCCEEEeeecCC
Confidence 8888643 34332 233589999999999999988753 2355666554433332222 257899999998754
No 62
>KOG0405|consensus
Probab=99.81 E-value=1.5e-19 Score=187.26 Aligned_cols=261 Identities=21% Similarity=0.296 Sum_probs=174.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+..+||+|+.|+++|+.....| .++.++|..-.+||+|.. .||-+ -+-.+|-+.... ++..-.+|-|
T Consensus 21 fDylvIGgGSGGvasARrAa~~G--Akv~l~E~~f~lGGTCVn---~GCVP----KKvm~~~a~~~~---~~~da~~yG~ 88 (478)
T KOG0405|consen 21 FDYLVIGGGSGGVASARRAASHG--AKVALCELPFGLGGTCVN---VGCVP----KKVMWYAADYSE---EMEDAKDYGF 88 (478)
T ss_pred cceEEEcCCcchhHHhHHHHhcC--ceEEEEecCCCcCceEEe---ecccc----ceeEEehhhhhH---HhhhhhhcCC
Confidence 35679999999999999999999 999999987799999984 46622 111111111110 0000011111
Q ss_pred CCCCCCC--------------------------------------------------------CCChhhhhhccCCCCCC
Q psy12350 820 KGNADKS--------------------------------------------------------YIGAKDVLENYNHPIYP 843 (1129)
Q Consensus 820 ~~~~~~~--------------------------------------------------------~~~~~~v~~~~~~P~~P 843 (1129)
+.+.... |....-+.++|++|.+|
T Consensus 89 ~~~~~~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~~P 168 (478)
T KOG0405|consen 89 PINEEGSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPIIP 168 (478)
T ss_pred ccccccCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccCCC
Confidence 1100001 11111122299999999
Q ss_pred CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-chhhhhccccEEEEec
Q psy12350 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-ITLDIATRASTVFLSH 922 (1129)
Q Consensus 844 ~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-~~~~~~~~~~~~~~~~ 922 (1129)
+|||.+- -+.|..+.+.+++ .||++|||+|++|+|+|.-++.+|.+++++-|....+. +++.++..+.+.+.
T Consensus 169 nIpG~E~----gidSDgff~Lee~-Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~-- 241 (478)
T KOG0405|consen 169 NIPGAEL----GIDSDGFFDLEEQ-PKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLE-- 241 (478)
T ss_pred CCCchhh----ccccccccchhhc-CceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhh--
Confidence 9999863 4677777777766 79999999999999999999999999999877554432 22222222211111
Q ss_pred CCccccccCCCCCeEEcCC--eeEEeC--Cc---EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCccc--cc
Q psy12350 923 HSERVTSLCLPNNVVLKPD--VAELTP--TG---VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQ--PL 992 (1129)
Q Consensus 923 ~~~~~~~~~~~~~V~~~~~--i~~v~~--~~---V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~--~l 992 (1129)
..+|.+++. +.++.. ++ +....|+...+|.++||+|..|+..-|. +..|+++++++.. +.
T Consensus 242 ----------~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDe 311 (478)
T KOG0405|consen 242 ----------GRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDE 311 (478)
T ss_pred ----------hcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEec
Confidence 125666654 555533 22 4556676667999999999999977665 4578999887764 45
Q ss_pred ccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcC
Q psy12350 993 YKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 993 y~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g 1032 (1129)
|.++ +.|+|+++|++..- ...|++-+.+|-+|..+-|
T Consensus 312 Yq~T---nvp~I~avGDv~gk~~LTPVAiaagr~la~rlF~ 349 (478)
T KOG0405|consen 312 YQNT---NVPSIWAVGDVTGKINLTPVAIAAGRKLANRLFG 349 (478)
T ss_pred cccC---CCCceEEeccccCcEecchHHHhhhhhHHHHhhc
Confidence 6655 89999999998754 4568999999988877655
No 63
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.81 E-value=1.6e-19 Score=215.15 Aligned_cols=291 Identities=14% Similarity=0.170 Sum_probs=168.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+||||||||++||.+|++ .|.+|+|+|+ +.+||+|.+ .+|. |.+...... . +...+.+...+.+
T Consensus 2 yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~-~~~GG~~~~---~gc~----Psk~l~~~~-~--~~~~~~~~~~~g~ 68 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEK-EYLGGTCLN---VGCI----PTKALLHSA-E--VYDEIKHAKDYGI 68 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCeEEEEec-CCCCCceee---cCcc----chHHHHHHh-h--HHHHHHHHHhcCC
Confidence 799999999999999999999 6799999999 889999984 3432 211111100 0 0000001111111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHh-----------cCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADN-----------FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~-----------~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.. .....+...+.++.+...++ .++ .+..++ +..+ +...+.+.+ .+......||
T Consensus 69 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~~-------~~~~~~v~~--~~g~~~~~~d- 133 (461)
T TIGR01350 69 EV--ENVSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKV--TVIKGE-AKFL-------DPGTVLVTG--ENGEETLTAK- 133 (461)
T ss_pred CC--CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEE-EEEc-------cCCEEEEec--CCCcEEEEeC-
Confidence 10 01123444454444333322 222 222222 2111 223343432 1112356799
Q ss_pred eeeeEEEEecccCCCCCccccc-cchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEML-ADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~-g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|+.|++| +. .+. ..+
T Consensus 134 ----~lVlAtG--~~p~~~~~~~~~-----~~~-------------~~~------------------------------- 158 (461)
T TIGR01350 134 ----NIIIATG--SRPRSLPGPFDF-----DGE-------------VVI------------------------------- 158 (461)
T ss_pred ----EEEEcCC--CCCCCCCCCCCC-----CCc-------------eEE-------------------------------
Confidence 9999999 788877664 10 000 000
Q ss_pred cccccccc-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CC
Q psy12350 238 RCSEDFTE-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NN 302 (1129)
Q Consensus 238 ~~~~~~~~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~ 302 (1129)
...+.+.. ...++++| ||||++|+|+|..|++.+.+|++++|.+.+++...+ -+
T Consensus 159 ~~~~~~~~~~~~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~ 227 (461)
T TIGR01350 159 TSTGALNLKEVPESLVI-----------IGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVK 227 (461)
T ss_pred cchHHhccccCCCeEEE-----------ECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCE
Confidence 00000100 01233333 899999999999999999999999998877653221 14
Q ss_pred eEEcCCceEEcC--Cce--EEcCC--CEeecCEEEEcccccccCC--CCCCCCCeEeecCcccccccccccCCCCCeEEe
Q psy12350 303 VVKKPDIAELTP--TGV--RFQDG--SYEQVDIILYCTGYTYRYP--FLHESCGIKVVNKNVQPLYKHLINIEHPSMCII 374 (1129)
Q Consensus 303 i~~~~~v~~~~~--~~v--~~~dg--~~~~~D~VI~atG~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~ 374 (1129)
+..+..|++++. +++ .+.+| +++++|.||+|+|.+++.+ ++. ..++..+.+..+....++ -.+.|++|.+
T Consensus 228 i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~-~~gl~~~~~g~i~vd~~l-~t~~~~Iyai 305 (461)
T TIGR01350 228 ILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLE-NLGVELDERGRIVVDEYM-RTNVPGIYAI 305 (461)
T ss_pred EEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcH-hhCceECCCCcEeeCCCc-ccCCCCEEEe
Confidence 566777887763 344 44567 4789999999999999988 444 345565554433332222 2467999999
Q ss_pred cccccc----cccccccceeeehhhccc
Q psy12350 375 GYTYRY----PFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 375 G~~~~~----~~~~~~~~~~~~a~~~~~ 398 (1129)
|..... +.+. .|++.+|.++.+
T Consensus 306 GD~~~~~~~~~~A~--~~g~~aa~~i~~ 331 (461)
T TIGR01350 306 GDVIGGPMLAHVAS--HEGIVAAENIAG 331 (461)
T ss_pred eecCCCcccHHHHH--HHHHHHHHHHcC
Confidence 987432 2243 777777777654
No 64
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.81 E-value=1.6e-19 Score=215.04 Aligned_cols=270 Identities=18% Similarity=0.228 Sum_probs=174.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccc--------------cccCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHS--------------SMYKSLK 804 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~--------------~~y~~~~ 804 (1129)
..+++|||+|++|+.+|..|.+.| .+|+|||+++.+||+|.+. ||- |.+. ..|....
T Consensus 5 ~yDvvVIGaGpaG~~aA~~la~~G--~~v~liE~~~~~GG~~~~~---gci----psk~l~~~~~~~~~~~~~~~~~~~~ 75 (461)
T PRK05249 5 DYDLVVIGSGPAGEGAAMQAAKLG--KRVAVIERYRNVGGGCTHT---GTI----PSKALREAVLRLIGFNQNPLYSSYR 75 (461)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CEEEEEecccccccccccc---CCC----CHHHHHHHHHHHHHHhhhhhhcccC
Confidence 458899999999999999999999 9999999988999999743 442 2110 0000000
Q ss_pred ----ccccc-----------------ccccccCCC--------CCCC-------CC--CCCCChhhhhhccCCCCCCCCC
Q psy12350 805 ----TNLPK-----------------DLMELCGYG--------HKGN-------AD--KSYIGAKDVLENYNHPIYPEFK 846 (1129)
Q Consensus 805 ----~~~~~-----------------~~~~~~~~~--------~~~~-------~~--~~~~~~~~v~~~~~~P~~P~i~ 846 (1129)
.+... ....-.... .... .. ..+....-++++|+.|..|+++
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~ 155 (461)
T PRK05249 76 VKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDV 155 (461)
T ss_pred CcCccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCC
Confidence 00000 000000000 0000 00 0122233344599999999887
Q ss_pred CCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCc
Q psy12350 847 GKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSE 925 (1129)
Q Consensus 847 G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 925 (1129)
+.+. -.++++.+..+.. ..+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+.....+.
T Consensus 156 ~~~~--~~v~~~~~~~~~~-~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~------- 225 (461)
T PRK05249 156 DFDH--PRIYDSDSILSLD-HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDALSYH------- 225 (461)
T ss_pred CCCC--CeEEcHHHhhchh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHHHHH-------
Confidence 7542 2355555554433 34799999999999999999999999999999987765542 12221111111
Q ss_pred cccccCCCCCeEEcCC--eeEEe--CCc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceee
Q psy12350 926 RVTSLCLPNNVVLKPD--VAELT--PTG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTIN 998 (1129)
Q Consensus 926 ~~~~~~~~~~V~~~~~--i~~v~--~~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~ 998 (1129)
+. ..+|++..+ +.+++ +++ +++.+|+++++|.||+|+|++|+...+. +..|+.+++++...+..+ +.
T Consensus 226 --l~---~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~ 299 (461)
T PRK05249 226 --LR---DSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNEN-YQ 299 (461)
T ss_pred --HH---HcCCEEEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCC-cc
Confidence 10 125665543 77775 333 4567888899999999999999987653 346778776554434333 34
Q ss_pred cCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 999 IEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 300 t~~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~ 335 (461)
T PRK05249 300 TAVPHIYAVGDVIGFPSLASASMDQGRIAAQHAVGE 335 (461)
T ss_pred cCCCCEEEeeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 689999999998754 35688999999999999875
No 65
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.81 E-value=2.4e-19 Score=211.57 Aligned_cols=265 Identities=19% Similarity=0.269 Sum_probs=170.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCc-----------cccccc-
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKS-----------LKTNLP- 808 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~-----------~~~~~~- 808 (1129)
+++|||+||+|+.+|..+.+.| ++|+|+|+ +.+||+|.. .||- |.+..++.. +-....
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~-~~~GG~c~~---~gci----Psk~l~~~a~~~~~~~~~~~~g~~~~~ 73 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHG--AKVAIAEE-PRVGGTCVI---RGCV----PKKLMVYGSTFGGEFEDAAGYGWTVGK 73 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CcEEEEec-CccCceeec---CCcC----chHHHHHHHHHHHHHhhhHhcCcCCCC
Confidence 7899999999999999999999 99999998 579999984 3552 221100000 000000
Q ss_pred -------------ccccccc----------CCC--------CCCC------CCCCCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 809 -------------KDLMELC----------GYG--------HKGN------ADKSYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 809 -------------~~~~~~~----------~~~--------~~~~------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
+....+. ... .... ....+....-++++|+.|..|++||.+.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~- 152 (446)
T TIGR01424 74 ARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHEL- 152 (446)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcCCCCCCCCccc-
Confidence 0000000 000 0000 0011222233444999999999999753
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
.+.+.+..... ..+|+|+|||+|.+|+|+|..+++.|.+|+++++++..++. .+.......+. +.
T Consensus 153 ---~~~~~~~~~l~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~---------l~- 218 (446)
T TIGR01424 153 ---GITSNEAFHLP-TLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARN---------ME- 218 (446)
T ss_pred ---eechHHhhccc-ccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHH---------HH-
Confidence 23333222222 23789999999999999999999999999999987654432 22221111110 11
Q ss_pred CCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCC
Q psy12350 931 CLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
..+|++..+ +.+++. ++ +++.+|+++++|.||+|+|++|+...|. +..|+++++++...+..+ +.++.||
T Consensus 219 --~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~~ 295 (446)
T TIGR01424 219 --GRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEY-SRTSIPS 295 (446)
T ss_pred --HCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCC-CccCCCC
Confidence 125666554 777753 23 5667888899999999999999987653 447788776554333333 3458999
Q ss_pred cEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1004 MFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1004 l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||++|++... ...+.+..||+.++..+.|.
T Consensus 296 IyA~GD~~~~~~l~~~A~~~g~~~a~~i~~~ 326 (446)
T TIGR01424 296 IYAVGDVTDRINLTPVAIMEATCFANTEFGN 326 (446)
T ss_pred EEEeeccCCCccchhHHHHHHHHHHHHHhcC
Confidence 9999999864 35589999999999998874
No 66
>PRK14727 putative mercuric reductase; Provisional
Probab=99.81 E-value=1.2e-19 Score=215.85 Aligned_cols=273 Identities=15% Similarity=0.165 Sum_probs=169.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc-
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS- 798 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~- 798 (1129)
..+++|||+|++|+.+|+.|.+.| .+|+|+|+.+.+||+|.. .||-+ +|++....
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g--~~v~~ie~~~~~GG~c~n---~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 90 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHG--ARVTIIEGADVIGGCCVN---VGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS 90 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCC--CeEEEEEccCcceeEecc---ccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence 357899999999999999999999 999999998899999984 35521 01110000
Q ss_pred -ccCccc-------cccc----ccccccc-CCC-------CCCC--------CC--CCCCChhhhhhccCCCCCCCCCCC
Q psy12350 799 -MYKSLK-------TNLP----KDLMELC-GYG-------HKGN--------AD--KSYIGAKDVLENYNHPIYPEFKGK 848 (1129)
Q Consensus 799 -~y~~~~-------~~~~----~~~~~~~-~~~-------~~~~--------~~--~~~~~~~~v~~~~~~P~~P~i~G~ 848 (1129)
.+..+. .... ...++.. ... +... .. ..+....-|+++|+.|+.|++||+
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~G~ 170 (479)
T PRK14727 91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIPGL 170 (479)
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCCCc
Confidence 000000 0000 0000000 000 0000 00 012223334449999999999998
Q ss_pred CCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCcccc
Q psy12350 849 DMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVT 928 (1129)
Q Consensus 849 ~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1129)
+. ...+++.+.... ...+|+|+|||+|.+|+|+|..+++.|++|+++.+......+.+.+.....+. +
T Consensus 171 ~~--~~~~~~~~~l~~-~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~---------L 238 (479)
T PRK14727 171 MD--TPYWTSTEALFS-DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTAC---------F 238 (479)
T ss_pred Cc--cceecchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHH---------H
Confidence 64 233443332222 22469999999999999999999999999999987432222222222111111 1
Q ss_pred ccCCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCC
Q psy12350 929 SLCLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 929 ~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
. ..+|++..+ +++++. ++ +.+.+| ++++|.||+|+|+.|+..+|. +..|+++++++...+..+ +.++.
T Consensus 239 ~---~~GV~i~~~~~V~~i~~~~~~~~v~~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~-~~Ts~ 313 (479)
T PRK14727 239 E---KEGIEVLNNTQASLVEHDDNGFVLTTGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPA-METSA 313 (479)
T ss_pred H---hCCCEEEcCcEEEEEEEeCCEEEEEEcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCC-eecCC
Confidence 0 125666544 666643 33 333444 589999999999999988663 346788776554444433 34589
Q ss_pred CCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||||++|++... ...+.+..|++.++..+.|.
T Consensus 314 ~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~ 346 (479)
T PRK14727 314 PDIYAAGDCSDLPQFVYVAAAAGSRAGINMTGG 346 (479)
T ss_pred CCEEEeeecCCcchhhhHHHHHHHHHHHHHcCC
Confidence 999999999865 45688999999999999874
No 67
>PRK06116 glutathione reductase; Validated
Probab=99.81 E-value=1.4e-19 Score=214.46 Aligned_cols=266 Identities=19% Similarity=0.272 Sum_probs=173.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccc---------------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLK--------------- 804 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~--------------- 804 (1129)
.+++|||+||+|+.+|..|.+.| .+|+|+|+. .+||+|.. .|| +|.+...+....
T Consensus 5 ~DvvVIG~GpaG~~aA~~~a~~G--~~V~liE~~-~~GG~c~n---~gc----iP~k~l~~~~~~~~~~~~~~~~~g~~~ 74 (450)
T PRK06116 5 YDLIVIGGGSGGIASANRAAMYG--AKVALIEAK-RLGGTCVN---VGC----VPKKLMWYGAQIAEAFHDYAPGYGFDV 74 (450)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEecc-chhhhhhc---cCc----chHHHHHHHHHHHHHHHhHHHhcCCCC
Confidence 47899999999999999999999 999999985 79999973 455 222110110000
Q ss_pred ----ccccc-------ccccc----------cCCCC--------CCC----CCCCCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 805 ----TNLPK-------DLMEL----------CGYGH--------KGN----ADKSYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 805 ----~~~~~-------~~~~~----------~~~~~--------~~~----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
.+..+ ....+ ....+ ... ....+....-++++|+.|+.|++||.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p~~p~i~g~~~- 153 (450)
T PRK06116 75 TENKFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRPSIPDIPGAEY- 153 (450)
T ss_pred CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCCCCCCCCCcce-
Confidence 00000 00000 00000 000 0001112223333999999999999752
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
++++.++..... .+|+|+|||+|.+|+|+|..|++.+.+|+++.+++..++. .+.+.....+ .+.
T Consensus 154 ---~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~---------~L~- 219 (450)
T PRK06116 154 ---GITSDGFFALEE-LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVE---------EME- 219 (450)
T ss_pred ---eEchhHhhCccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHH---------HHH-
Confidence 455554443332 3789999999999999999999999999999887654322 1111111111 010
Q ss_pred CCCCCeEEcCC--eeEEeC--Cc---EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCC
Q psy12350 931 CLPNNVVLKPD--VAELTP--TG---VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~--~~---V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
..+|++..+ |.+++. ++ +.+.+|+++++|.||+|+|++|+.++|. +..|+++++++...+..+ +.++.|
T Consensus 220 --~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts~~ 296 (450)
T PRK06116 220 --KKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEY-QNTNVP 296 (450)
T ss_pred --HCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCC-CCcCCC
Confidence 125666554 777753 22 5677899999999999999999988653 346788876654444433 346899
Q ss_pred CcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1003 TMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1003 ~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|||++|++... ...+.+..||+.+|..+.|.
T Consensus 297 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 328 (450)
T PRK06116 297 GIYAVGDVTGRVELTPVAIAAGRRLSERLFNN 328 (450)
T ss_pred CEEEEeecCCCcCcHHHHHHHHHHHHHHHhCC
Confidence 99999998754 45689999999999999874
No 68
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.80 E-value=3.5e-19 Score=212.03 Aligned_cols=302 Identities=16% Similarity=0.177 Sum_probs=164.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccc-cCCccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKT-NLPKEIMELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~~~~~d 86 (1129)
..+||+||||||||++||.+|++ .|.+|+|+|+. .+||+|.+ .||. | ...+...... ...+. ...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~-~~GG~c~~---~gci----P-sk~l~~~a~~~~~~~~---~~~ 68 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKG-KLGGTCLH---KGCI----P-SKALLHSAEVFQTAKK---ASP 68 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEcc-CCCcceEc---CCcC----c-hHHHHHHHHHHHHHHH---HHh
Confidence 45899999999999999999999 67999999995 79999994 4442 2 1111111000 00000 011
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHH-----------HHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDF-----------ADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+.+... ....+...+.++.++. .++.++ .+..+ +++.++...-..+..++.+.. .+++...+.
T Consensus 69 ~g~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g-~a~~i~~~~~~~~~~~~~v~~-~~g~~~~~~ 142 (472)
T PRK05976 69 FGISVS--GPALDFAKVQERKDGIVDRLTKGVAALLKKGKI--DVFHG-IGRILGPSIFSPMPGTVSVET-ETGENEMII 142 (472)
T ss_pred cCccCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEeCCCCCcCCceEEEEEe-CCCceEEEE
Confidence 111000 0012333344332222 222233 44433 233343310000111344432 222234578
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +|||||| +.|..|+... ..+ ....
T Consensus 143 ~d-----~lViATG--s~p~~~p~~~-----~~~---------------~~~~--------------------------- 168 (472)
T PRK05976 143 PE-----NLLIATG--SRPVELPGLP-----FDG---------------EYVI--------------------------- 168 (472)
T ss_pred cC-----EEEEeCC--CCCCCCCCCC-----CCC---------------ceEE---------------------------
Confidence 99 9999999 7775442110 000 0000
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------C
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------N 301 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~ 301 (1129)
...+.+.... ++++++| ||||++|+|+|..|++.|.+|||++|.+.+++...+ -
T Consensus 169 --~~~~~~~~~~------~~~~vvI----IGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~~~gI 236 (472)
T PRK05976 169 --SSDEALSLET------LPKSLVI----VGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLKKLGV 236 (472)
T ss_pred --cchHhhCccc------cCCEEEE----ECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHHhcCC
Confidence 0000000000 1233333 899999999999999999999999998876654221 1
Q ss_pred CeEEcCCceEEc---CCce---EEcCCC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 302 NVVKKPDIAELT---PTGV---RFQDGS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 302 ~i~~~~~v~~~~---~~~v---~~~dg~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
++..++.|++++ ++++ .+.+|+ ++++|.||+|+|.+++.+.+. +..++..+ +..+....++ .++.|++|
T Consensus 237 ~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~-~g~i~Vd~~l-~ts~~~Iy 314 (472)
T PRK05976 237 RVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVE-GGFIQIDDFC-QTKERHIY 314 (472)
T ss_pred EEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceec-CCEEEECCCc-ccCCCCEE
Confidence 456677788886 3443 345674 579999999999999988653 22333332 2222222222 24678999
Q ss_pred Eeccccccc-c-cccccceeeehhhcc
Q psy12350 373 IIGYTYRYP-F-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 373 ~~G~~~~~~-~-~~~~~~~~~~a~~~~ 397 (1129)
.+|.....| + .....|++.+|.++.
T Consensus 315 AiGD~~~~~~~~~~A~~~g~~aa~~i~ 341 (472)
T PRK05976 315 AIGDVIGEPQLAHVAMAEGEMAAEHIA 341 (472)
T ss_pred EeeecCCCcccHHHHHHHHHHHHHHHc
Confidence 999874322 1 112266666666654
No 69
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.80 E-value=2.3e-19 Score=221.55 Aligned_cols=269 Identities=13% Similarity=0.173 Sum_probs=159.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||.+|++ .|++|+|||+++.+||++.+. +++|.
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~------------------------------IP~~r 584 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNI------------------------------IPEFR 584 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeec------------------------------ccccC
Confidence 4799999999999999999999 669999999999999998741 01111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.+ .+++++..+....+|+ .+++++... + ++. ......|| +|||||
T Consensus 585 ---------lp-~e~l~~~ie~l~~~GV--e~~~g~~~d-~------------~ve-----~l~~~gYD-----aVIIAT 629 (1012)
T TIGR03315 585 ---------IS-AESIQKDIELVKFHGV--EFKYGCSPD-L------------TVA-----ELKNQGYK-----YVILAI 629 (1012)
T ss_pred ---------CC-HHHHHHHHHHHHhcCc--EEEEecccc-e------------Ehh-----hhhccccc-----EEEECC
Confidence 01 2344444455556665 666664211 0 010 11123489 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
|.. .+..+.+||.....+. ...++..+ .. .
T Consensus 630 GA~-~~~~l~I~G~~~~v~~------------------avefL~~~-----------------------~~--------~ 659 (1012)
T TIGR03315 630 GAW-KHGPLRLEGGGERVLK------------------SLEFLRAF-----------------------KE--------G 659 (1012)
T ss_pred CCC-CCCCCCcCCCCcceee------------------HHHHHHHh-----------------------hc--------c
Confidence 942 2334455542110000 00010000 00 0
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhccc-c-cEEEEccccCC-cccccC-------CC--CeEEcCCceEEcCCc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTE-A-TTVFLSHHSEH-VKKLRF-------PN--NVVKKPDIAELTPTG 316 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~-~-~~V~lv~r~~~-~~~~~~-------~~--~i~~~~~v~~~~~~~ 316 (1129)
...+..|++|+| ||||++|+|+|..+.+. | ++|++++|+.. .++... .+ ++.....+.+++++.
T Consensus 660 ~~~~~~GK~VVV----IGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~aleeGVe~~~~~~p~~I~~g~ 735 (1012)
T TIGR03315 660 PTINPLGKHVVV----VGGGNTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEALEDGVDFKELLSPESFEDGT 735 (1012)
T ss_pred ccccccCCeEEE----ECCCHHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHHHcCCEEEeCCceEEEECCe
Confidence 001112455555 89999999999988775 5 68999998763 222111 11 233334444444322
Q ss_pred e-----------------EEcCCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccc
Q psy12350 317 V-----------------RFQDGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYT 377 (1129)
Q Consensus 317 v-----------------~~~dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~ 377 (1129)
+ ...+|+ ++++|.||+|+|++++..+++ ..++..+.+..+.........+.|++|.+|..
T Consensus 736 l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle-~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~ 814 (1012)
T TIGR03315 736 LTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQ-KNGIPLDEYGWPVVNQATGETNITNVFVIGDA 814 (1012)
T ss_pred EEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChHHHH-hcCcccCCCCCEEeCCCCCccCCCCEEEEeCc
Confidence 2 122344 479999999999999998886 45566655444333333334678999999987
Q ss_pred cccc--ccccccceeeehhhcccc
Q psy12350 378 YRYP--FLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 378 ~~~~--~~~~~~~~~~~a~~~~~~ 399 (1129)
...| ...+..||+.+|.++.+.
T Consensus 815 a~GP~tVv~AIaqGr~AA~nIl~~ 838 (1012)
T TIGR03315 815 NRGPATIVEAIADGRKAANAILSR 838 (1012)
T ss_pred CCCccHHHHHHHHHHHHHHHHhcc
Confidence 5432 234458888888887653
No 70
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.80 E-value=3.6e-19 Score=222.72 Aligned_cols=282 Identities=17% Similarity=0.221 Sum_probs=167.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.|. +++|
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~g------------------------------ip~~ 477 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYG------------------------------IPEF 477 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeec------------------------------CCCC
Confidence 45799999999999999999999 679999999999999998851 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+| .++.+...+...++++ .+++++.|.. .+++. ......|| +||||
T Consensus 478 rlp----------~~~~~~~~~~l~~~gv--~~~~~~~v~~-----------~v~~~-----~l~~~~yd-----avvlA 524 (752)
T PRK12778 478 RLP----------KKIVDVEIENLKKLGV--KFETDVIVGK-----------TITIE-----ELEEEGFK-----GIFIA 524 (752)
T ss_pred CCC----------HHHHHHHHHHHHHCCC--EEECCCEECC-----------cCCHH-----HHhhcCCC-----EEEEe
Confidence 111 1344444455566666 6777765521 11111 11223589 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. +.|+.|++||... .| .++. .|+.... ....+.......
T Consensus 525 tGa-~~~~~l~ipG~~~---~g---------------V~~~~~~l~~~~-----------------~~~~~~~~~~~~-- 566 (752)
T PRK12778 525 SGA-GLPNFMNIPGENS---NG---------------VMSSNEYLTRVN-----------------LMDAASPDSDTP-- 566 (752)
T ss_pred CCC-CCCCCCCCCCCCC---CC---------------cEEHHHHHHHHh-----------------hcccccccccCc--
Confidence 993 2578888877321 11 1111 1110000 000000000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccE-EEEccccCCc-ccccC-------CC--CeEEcCCceEEcC-
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATT-VFLSHHSEHV-KKLRF-------PN--NVVKKPDIAELTP- 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~-V~lv~r~~~~-~~~~~-------~~--~i~~~~~v~~~~~- 314 (1129)
...|++|+| ||||++|+|+|..+.+.|.+ ||+++|++.. ++... .. ++.....+.++.+
T Consensus 567 -----~~~gk~VvV----IGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~~~GV~i~~~~~~~~i~~~ 637 (752)
T PRK12778 567 -----IKFGKKVAV----VGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAKEEGIEFLTLHNPIEYLAD 637 (752)
T ss_pred -----ccCCCcEEE----ECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCEEEecCcceEEEEC
Confidence 112344444 89999999999999999876 9999987531 11110 11 3334455555532
Q ss_pred -Cc----eEEc---------C---------CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCC
Q psy12350 315 -TG----VRFQ---------D---------GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 315 -~~----v~~~---------d---------g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
++ |.+. + |+ ++++|.||+|+|++++..++....++.++.+..+....+. .++.|
T Consensus 638 ~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~ 716 (752)
T PRK12778 638 EKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIP 716 (752)
T ss_pred CCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCC
Confidence 11 3331 2 22 4799999999999999877654335565544333222222 46789
Q ss_pred CeEEeccccccc--ccccccceeeehhhccccccc
Q psy12350 370 SMCIIGYTYRYP--FLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 370 ~l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
++|.+|.....| ...+..+++.+|.++...+.+
T Consensus 717 gVfA~GD~~~g~~~vv~Av~~G~~AA~~I~~~L~~ 751 (752)
T PRK12778 717 GIYAGGDIVRGGATVILAMGDGKRAAAAIDEYLSS 751 (752)
T ss_pred CEEEeCCccCCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999886432 233458888888887766544
No 71
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.79 E-value=2.4e-19 Score=211.41 Aligned_cols=267 Identities=16% Similarity=0.215 Sum_probs=171.8
Q ss_pred cCccccccCCchhhHHHHHHhh-CCCcceEEEccc--------CCcCcccccCCCCCCCCCCCCccccccC---------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQA--------DNIGGTWLYTEHIGCDQYGLPVHSSMYK--------- 801 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~--------~~~GG~w~~~~~~g~~~~g~p~~~~~y~--------- 801 (1129)
.+++|||+|++|..+|..+.+. | .+|+|+|+. +.+||+|.. .||- |.+..++.
T Consensus 4 ~DviVIG~G~~G~~aA~~aa~~~g--~~V~lie~~~~~~~~~~~~~GGtCln---~GCi----PsK~l~~~a~~~~~~~~ 74 (486)
T TIGR01423 4 FDLVVIGAGSGGLEAGWNAATLYK--KRVAVIDVQTHHGPPHYAALGGTCVN---VGCV----PKKLMVTGAQYMDTLRE 74 (486)
T ss_pred cCEEEECCChHHHHHHHHHHHhcC--CEEEEEecccCccccccCCccCeecC---cCCc----cHHHHHHHHHHHHHHHH
Confidence 3789999999999999999997 8 999999984 579999984 4662 21110000
Q ss_pred ----cc-------ccccc--------------c---cccc-ccCCC-------CCCCCC--------------CCCCChh
Q psy12350 802 ----SL-------KTNLP--------------K---DLME-LCGYG-------HKGNAD--------------KSYIGAK 831 (1129)
Q Consensus 802 ----~~-------~~~~~--------------~---~~~~-~~~~~-------~~~~~~--------------~~~~~~~ 831 (1129)
.. ..+.. . ...+ ..... +..... ..+....
T Consensus 75 ~~~~gi~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~ 154 (486)
T TIGR01423 75 SAGFGWEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEH 154 (486)
T ss_pred hhccCeeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCE
Confidence 00 00000 0 0000 00000 000000 0112222
Q ss_pred hhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhc---CCEEEEEecCCCCccc-
Q psy12350 832 DVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATT---GKQAVVVGSGQSGLDI- 907 (1129)
Q Consensus 832 ~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~---~~~V~vv~~~~~~~~~- 907 (1129)
-++++|+.|..|++||.+. ++.+.+..... -.+|+|+|||+|.+|+|+|..++.. |.+||++++.+..++.
T Consensus 155 lIIATGs~p~~p~i~G~~~----~~~~~~~~~~~-~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~ 229 (486)
T TIGR01423 155 ILLATGSWPQMLGIPGIEH----CISSNEAFYLD-EPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGF 229 (486)
T ss_pred EEEecCCCCCCCCCCChhh----eechhhhhccc-cCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcccccc
Confidence 3344999999999999753 33333322222 2479999999999999999877654 8999999987765542
Q ss_pred hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C---cEEecCCcEeeccEEEEccCccCcCCCCC-CC
Q psy12350 908 TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T---GVRFQDGSYEQVDIILCCTGYSNHYPFLH-ES 979 (1129)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~---~V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~ 979 (1129)
.+.+.....+.+. ..+|+++.+ +++++. + .+.+.+|+++++|.||+|||++|+..++. +.
T Consensus 230 d~~~~~~l~~~L~------------~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~l~l~~ 297 (486)
T TIGR01423 230 DSTLRKELTKQLR------------ANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQTLQLDK 297 (486)
T ss_pred CHHHHHHHHHHHH------------HcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCcccCCchh
Confidence 2222222221111 125666554 777753 2 26677888999999999999999988764 34
Q ss_pred CCeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 980 CGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 980 ~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.|+++++++...+..++ .++.||||++|++... ...+.+..|++.++..+.|.
T Consensus 298 ~gl~~~~~G~I~Vd~~l-~Ts~~~IyA~GDv~~~~~l~~~A~~qG~~aa~ni~g~ 351 (486)
T TIGR01423 298 VGVELTKKGAIQVDEFS-RTNVPNIYAIGDVTDRVMLTPVAINEGAAFVDTVFGN 351 (486)
T ss_pred hCceECCCCCEecCCCC-cCCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 67888766544443333 4689999999999865 35688999999999999874
No 72
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.79 E-value=5.7e-19 Score=209.96 Aligned_cols=132 Identities=18% Similarity=0.202 Sum_probs=91.2
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEcCC--c--eEEcCC----
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELTPT--G--VRFQDG---- 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~~~--~--v~~~dg---- 322 (1129)
||+|++|+|+|..|++.+.+||++++.+.+++...+ -++..+..|++++++ + +.+.++
T Consensus 189 vGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~ 268 (475)
T PRK06327 189 IGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEA 268 (475)
T ss_pred ECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCce
Confidence 899999999999999999999999998876553221 145556778888643 3 455553
Q ss_pred CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccccc--cccccceeeehhhcc
Q psy12350 323 SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 323 ~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~ 397 (1129)
+++++|.||+|+|++++.++|. +..++..+++..+....++ ..+.|++|++|.....|. ..+..|++.+|.++.
T Consensus 269 ~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~ 345 (475)
T PRK06327 269 QTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHC-RTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIA 345 (475)
T ss_pred eEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCC-ccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHc
Confidence 4689999999999999998653 2355666555443333332 257899999998753221 112266666666654
No 73
>PRK06370 mercuric reductase; Validated
Probab=99.79 E-value=8.6e-19 Score=208.35 Aligned_cols=273 Identities=16% Similarity=0.216 Sum_probs=173.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcc---
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVH--- 796 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~--- 796 (1129)
..+++|||+||+|+.+|..+.+.| ++|+|+|+. .+||+|.. .||-+ +|++..
T Consensus 5 ~~DvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~---~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~ 78 (463)
T PRK06370 5 RYDAIVIGAGQAGPPLAARAAGLG--MKVALIERG-LLGGTCVN---TGCVPTKTLIASARAAHLARRAAEYGVSVGGPV 78 (463)
T ss_pred cccEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-ccCCceec---cccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence 458999999999999999999999 999999985 79999974 35521 122110
Q ss_pred ccccCccccc-------ccccc-cccc---CCCCC-------CC-----CCCCCCChhhhhhccCCCCCCCCCCCCCCCC
Q psy12350 797 SSMYKSLKTN-------LPKDL-MELC---GYGHK-------GN-----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQI 853 (1129)
Q Consensus 797 ~~~y~~~~~~-------~~~~~-~~~~---~~~~~-------~~-----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g 853 (1129)
..-+..+... ..... ..+. +..+- .. ....+....-++++|+.|+.|++||.+. -
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p~~p~i~G~~~--~ 156 (463)
T PRK06370 79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARAAIPPIPGLDE--V 156 (463)
T ss_pred ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCCCCCCCCCCCc--C
Confidence 0000000000 00000 0000 00000 00 0001112223344999999999999865 2
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
.++++.+..+.. ..+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++.. +.......+. +.
T Consensus 157 ~~~~~~~~~~~~-~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~---------l~--- 223 (463)
T PRK06370 157 GYLTNETIFSLD-ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREI---------LE--- 223 (463)
T ss_pred ceEcchHhhCcc-ccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHH---------HH---
Confidence 355665554433 247999999999999999999999999999999876554321 1111111110 10
Q ss_pred CCCeEEcCC--eeEEeCC--c--EEec---CCcEeeccEEEEccCccCcCCCC-CCCCCeeecCCcccccccceeecCCC
Q psy12350 933 PNNVVLKPD--VAELTPT--G--VRFQ---DGSYEQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 933 ~~~V~~~~~--i~~v~~~--~--V~~~---dG~~~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
..+|++..+ +.+++++ + +.+. +++++++|.||+|+|++|+...| -+..|+.+++++...+..+ +.++.|
T Consensus 224 ~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~-l~t~~~ 302 (463)
T PRK06370 224 REGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQ-LRTTNP 302 (463)
T ss_pred hCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcC-CcCCCC
Confidence 125666654 7777643 2 3332 34568999999999999998744 2346788776654444443 346899
Q ss_pred CcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1003 TMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1003 ~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|||++|++.... ....+..||+.+|+++.|.
T Consensus 303 ~IyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 334 (463)
T PRK06370 303 GIYAAGDCNGRGAFTHTAYNDARIVAANLLDG 334 (463)
T ss_pred CEEEeeecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 999999987653 4578999999999999864
No 74
>PRK14694 putative mercuric reductase; Provisional
Probab=99.79 E-value=3.9e-19 Score=211.20 Aligned_cols=267 Identities=16% Similarity=0.201 Sum_probs=166.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccccc-----C---------cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMY-----K---------SLKT 805 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y-----~---------~~~~ 805 (1129)
.+++|||+|++|+++|..|.+.| .+|+|||+. .+||+|.. +|| +|.+.... . .+..
T Consensus 7 ~dviVIGaG~aG~~aA~~l~~~g--~~v~lie~~-~~GGtc~n---~Gc----iPsk~l~~~a~~~~~~~~~~~~~g~~~ 76 (468)
T PRK14694 7 LHIAVIGSGGSAMAAALKATERG--ARVTLIERG-TIGGTCVN---IGC----VPSKIMIRAAHIAHLRRESPFDDGLSA 76 (468)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEEcc-ccccceec---CCc----cccHHHHHHHHHHHHHhhccccCCccc
Confidence 37899999999999999999999 999999985 79999983 676 23221000 0 0000
Q ss_pred c-----cc-------cccc------------cccCCCC--------CCC-C------C--CCCCChhhhhhccCCCCCCC
Q psy12350 806 N-----LP-------KDLM------------ELCGYGH--------KGN-A------D--KSYIGAKDVLENYNHPIYPE 844 (1129)
Q Consensus 806 ~-----~~-------~~~~------------~~~~~~~--------~~~-~------~--~~~~~~~~v~~~~~~P~~P~ 844 (1129)
. .. .... ......+ ... + . ..+....-++++|+.|+.|+
T Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p~~p~ 156 (468)
T PRK14694 77 QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARPAEPP 156 (468)
T ss_pred CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCCCCCC
Confidence 0 00 0000 0000000 000 0 0 01111223334999999999
Q ss_pred CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCC
Q psy12350 845 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHS 924 (1129)
Q Consensus 845 i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1129)
+||++++ .++++.+..... ..+|+|+|||+|.+|+|+|..|++.+.+|+++.+........+.+.....+.
T Consensus 157 i~G~~~~--~~~~~~~~~~l~-~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~------ 227 (468)
T PRK14694 157 VPGLAET--PYLTSTSALELD-HIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAA------ 227 (468)
T ss_pred CCCCCCC--ceEcchhhhchh-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHH------
Confidence 9998763 355554433222 2479999999999999999999999999999976422111222221111111
Q ss_pred ccccccCCCCCeEEcCC--eeEEeCCc--EEe-cCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceee
Q psy12350 925 ERVTSLCLPNNVVLKPD--VAELTPTG--VRF-QDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTIN 998 (1129)
Q Consensus 925 ~~~~~~~~~~~V~~~~~--i~~v~~~~--V~~-~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~ 998 (1129)
+. ..+|+++.+ +.+++.++ +.+ .++.++++|.||+|+|.+|+..++. +.+|++.++.. ..+..+ +.
T Consensus 228 ---l~---~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~G~-i~vd~~-~~ 299 (468)
T PRK14694 228 ---FR---REGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVETERGA-IRIDEH-LQ 299 (468)
T ss_pred ---HH---hCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCCCCchhcCcccCCCe-EeeCCC-cc
Confidence 11 125666554 77775432 222 2344699999999999999988764 33566654332 233333 34
Q ss_pred cCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 999 IEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.||||++|++... ...+.+..|++.+|..+.|.
T Consensus 300 Ts~~~IyA~GD~~~~~~~~~~A~~~G~~aa~~i~~~ 335 (468)
T PRK14694 300 TTVSGIYAAGDCTDQPQFVYVAAAGGSRAAINMTGG 335 (468)
T ss_pred cCCCCEEEEeecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 589999999999754 45688899999999999764
No 75
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.79 E-value=6.4e-19 Score=215.71 Aligned_cols=273 Identities=15% Similarity=0.156 Sum_probs=168.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||..|++ .|++|+|||+.+.+||.+.+. ++.|
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~g------------------------------ip~~- 239 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYG------------------------------IPRF- 239 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeec------------------------------CCCC-
Confidence 4799999999999999999999 679999999999999999851 1111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
....++.++..+...++|+ .+++++.+. ++ +++ .. ....|| +||+||
T Consensus 240 ---------~~~~~~~~~~~~~l~~~Gv--~i~~~~~v~-~d----------v~~---~~---~~~~~D-----aVilAt 286 (652)
T PRK12814 240 ---------RLPESVIDADIAPLRAMGA--EFRFNTVFG-RD----------ITL---EE---LQKEFD-----AVLLAV 286 (652)
T ss_pred ---------CCCHHHHHHHHHHHHHcCC--EEEeCCccc-Cc----------cCH---HH---HHhhcC-----EEEEEc
Confidence 1112444555555666766 777777542 10 001 00 012389 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|.. .+..+++||.. ..| ... ..++.. . ....
T Consensus 287 Ga~-~~~~~~ipG~~---~~g---------------v~~~~~~l~~----------------------~-~~~~------ 318 (652)
T PRK12814 287 GAQ-KASKMGIPGEE---LPG---------------VISGIDFLRN----------------------V-ALGT------ 318 (652)
T ss_pred CCC-CCCCCCCCCcC---cCC---------------cEeHHHHHHH----------------------h-hcCC------
Confidence 932 23456676631 111 100 001000 0 0000
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCC-ccccc---------CCCCeEEcCCceEEcC--
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEH-VKKLR---------FPNNVVKKPDIAELTP-- 314 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~-~~~~~---------~~~~i~~~~~v~~~~~-- 314 (1129)
.+..|++|+| ||||++|+|+|..+.+.| ++|++++|+.. .++.. ..-++.....+.++.+
T Consensus 319 ---~~~~gk~VvV----IGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~~eGV~i~~~~~~~~i~~~~ 391 (652)
T PRK12814 319 ---ALHPGKKVVV----IGGGNTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSE 391 (652)
T ss_pred ---cccCCCeEEE----ECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCcEEeccCcEEEEecC
Confidence 0112444445 899999999999988887 57999998763 22211 1114445555666642
Q ss_pred Cce-----EEc---------------CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeE
Q psy12350 315 TGV-----RFQ---------------DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 315 ~~v-----~~~---------------dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
+++ .+. +|+ ++++|.||+|+|+.++..++. ..++..+.+..+......+.++.|++|
T Consensus 392 ~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~-~~gl~~~~~G~I~vd~~~~~Ts~pgVf 470 (652)
T PRK12814 392 GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAE-AAGIGTSRNGTVKVDPETLQTSVAGVF 470 (652)
T ss_pred CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCccccc-ccCccccCCCcEeeCCCCCcCCCCCEE
Confidence 221 111 233 479999999999999998886 345665554444443334446789999
Q ss_pred Eecccccccc--cccccceeeehhhcccccccc
Q psy12350 373 IIGYTYRYPF--LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 373 ~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.+|.....|- ..+..|++.+|.++...+.+.
T Consensus 471 A~GDv~~g~~~v~~Ai~~G~~AA~~I~~~L~g~ 503 (652)
T PRK12814 471 AGGDCVTGADIAINAVEQGKRAAHAIDLFLNGK 503 (652)
T ss_pred EcCCcCCCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9998764332 334588888888888777664
No 76
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.79 E-value=3.8e-19 Score=210.18 Aligned_cols=269 Identities=18% Similarity=0.255 Sum_probs=174.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC-CcCcccccCCCCCCCCCCCCccccccCc----------------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD-NIGGTWLYTEHIGCDQYGLPVHSSMYKS---------------- 802 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~-~~GG~w~~~~~~g~~~~g~p~~~~~y~~---------------- 802 (1129)
.+++|||+|++|+.+|..|.+.| .+|+|+|+.+ .+||+|.. .||- |.+...+..
T Consensus 4 yDvvVIGgGpaGl~aA~~la~~g--~~V~lie~~~~~~GG~~~~---~gci----p~k~l~~~~~~~~~~~~~~~~~~~~ 74 (441)
T PRK08010 4 YQAVIIGFGKAGKTLAVTLAKAG--WRVALIEQSNAMYGGTCIN---IGCI----PTKTLVHDAQQHTDFVRAIQRKNEV 74 (441)
T ss_pred CCEEEECCCHhHHHHHHHHHHCC--CeEEEEcCCCCccceeEee---cccc----chHHHHHHhccCCCHHHHHHHHHHH
Confidence 48899999999999999999999 9999999976 48999973 3442 221100000
Q ss_pred ---cccccccccccccCCC--------CCCC-------CCC-CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCC
Q psy12350 803 ---LKTNLPKDLMELCGYG--------HKGN-------ADK-SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT 863 (1129)
Q Consensus 803 ---~~~~~~~~~~~~~~~~--------~~~~-------~~~-~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~ 863 (1129)
+.......+....... .... ... .+.....++++|+.|..|++||++++.+ ++++.++.+
T Consensus 75 ~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~~-v~~~~~~~~ 153 (441)
T PRK08010 75 VNFLRNKNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTPG-VYDSTGLLN 153 (441)
T ss_pred HHHHHHhHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCCC-EEChhHhhc
Confidence 0000000000000000 0000 000 1222333445999999999999876654 566655544
Q ss_pred CCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC-
Q psy12350 864 PEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD- 941 (1129)
Q Consensus 864 ~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~- 941 (1129)
.. ..+++|+|||+|.+|+|+|..|++.+.+|+++++++..++. .+.+.....+. +. ..+|+++.+
T Consensus 154 ~~-~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~---------l~---~~gV~v~~~~ 220 (441)
T PRK08010 154 LK-ELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATI---------LR---DQGVDIILNA 220 (441)
T ss_pred cc-ccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHH---------HH---hCCCEEEeCC
Confidence 33 34789999999999999999999999999999987655432 12121111111 11 125666543
Q ss_pred -eeEEeCC--cEEe--cCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEcccccc-c
Q psy12350 942 -VAELTPT--GVRF--QDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-L 1014 (1129)
Q Consensus 942 -i~~v~~~--~V~~--~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~ 1014 (1129)
+.+++.+ .+.+ ++| ++++|.||+|+|.+|+..++. +..|+++++++...+..+ +.++.||||++|++... .
T Consensus 221 ~v~~i~~~~~~v~v~~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~-~~Ts~~~IyA~GD~~~~~~ 298 (441)
T PRK08010 221 HVERISHHENQVQVHSEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKY-LHTTADNIWAMGDVTGGLQ 298 (441)
T ss_pred EEEEEEEcCCEEEEEEcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCcc
Confidence 7777542 3433 344 589999999999999987654 346788776554334333 35589999999999865 3
Q ss_pred hhHHHHHHHHHHHHHHcCC
Q psy12350 1015 LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..+.+..|++.++..+.|.
T Consensus 299 ~~~~a~~~~~~~~~~~~g~ 317 (441)
T PRK08010 299 FTYISLDDYRIVRDELLGE 317 (441)
T ss_pred chhHHHHHHHHHHHHHcCC
Confidence 5588889999999998874
No 77
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.79 E-value=3.5e-19 Score=205.61 Aligned_cols=284 Identities=16% Similarity=0.191 Sum_probs=170.5
Q ss_pred eEEEEcCChHHHHHHHHhhcC-CCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEP-GSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~-~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+|+|||||+||+.+|++|+++ .++++|+|+|+++.. .|.. .++...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~----------------------~~~~---~~~~~~-------- 47 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT----------------------PYSG---MLPGMI-------- 47 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC----------------------cccc---hhhHHH--------
Confidence 599999999999999999753 467899999997641 1111 011000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
. ...+.+++...++++++++++ ++.. .+|+.|+. +...+.+. ....+.|| +||||||
T Consensus 48 ----~-g~~~~~~~~~~~~~~~~~~gv--~~~~-~~v~~id~-----~~~~V~~~-----~g~~~~yD-----~LviAtG 104 (364)
T TIGR03169 48 ----A-GHYSLDEIRIDLRRLARQAGA--RFVI-AEATGIDP-----DRRKVLLA-----NRPPLSYD-----VLSLDVG 104 (364)
T ss_pred ----h-eeCCHHHhcccHHHHHHhcCC--EEEE-EEEEEEec-----ccCEEEEC-----CCCccccc-----EEEEccC
Confidence 0 011233455455666666665 5554 47888876 22333321 12346799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc-cc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF-RK 248 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~ 248 (1129)
+.|..|++||..+..+.- .+..++... +. ...+.+... ..
T Consensus 105 --~~~~~~~i~g~~~~~~~~----~~~~~~~~~------------------------------~~---~~~~~~~~~~~~ 145 (364)
T TIGR03169 105 --STTPLSGVEGAADLAVPV----KPIENFLAR------------------------------WE---ALLESADAPPGT 145 (364)
T ss_pred --CCCCCCCCCccccccccc----CCHHHHHHH------------------------------HH---HHHHHHhcCCCC
Confidence 888888888732211100 000000000 00 000001000 12
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhccc----c--cEEEEccccCCcccccCC--------------CCeEEcCC
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTE----A--TTVFLSHHSEHVKKLRFP--------------NNVVKKPD 308 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~----~--~~V~lv~r~~~~~~~~~~--------------~~i~~~~~ 308 (1129)
++++| ||+|++|+|+|..|+.. + .+|+++ +.+.+++...+ -++..+..
T Consensus 146 ~~vvV-----------vG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~ 213 (364)
T TIGR03169 146 KRLAV-----------VGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAP 213 (364)
T ss_pred ceEEE-----------ECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCe
Confidence 33433 89999999999999753 3 589999 54444332111 14556778
Q ss_pred ceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc---cc---
Q psy12350 309 IAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY---PF--- 382 (1129)
Q Consensus 309 v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~---~~--- 382 (1129)
|+++++++|.+++|+++++|.||+|+|.+++ +++.. .++..+++..+.....+-..++|++|++|..... |.
T Consensus 214 v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~-~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~ 291 (364)
T TIGR03169 214 VTRGPDGALILADGRTLPADAILWATGARAP-PWLAE-SGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKA 291 (364)
T ss_pred eEEEcCCeEEeCCCCEEecCEEEEccCCChh-hHHHH-cCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCc
Confidence 8899877899999999999999999999987 45542 2344444333333333322478999999977532 11
Q ss_pred -cccccceeeehhhcccccccc
Q psy12350 383 -LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 383 -~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
..+.+||+.+|+++.+.+.|.
T Consensus 292 ~~~A~~~g~~~a~ni~~~l~g~ 313 (364)
T TIGR03169 292 GVYAVRQAPILAANLRASLRGQ 313 (364)
T ss_pred hHHHHHhHHHHHHHHHHHhcCC
Confidence 123488899999998877665
No 78
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=99.78 E-value=1.1e-18 Score=196.44 Aligned_cols=267 Identities=16% Similarity=0.147 Sum_probs=168.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC----CCCCCCCCCCCccccccCcccc-----ccc---
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT----EHIGCDQYGLPVHSSMYKSLKT-----NLP--- 808 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~----~~~g~~~~g~p~~~~~y~~~~~-----~~~--- 808 (1129)
+++|||+|++|+++|..|.+.| ++|+|||+++ .||.|... .+|+... .++.. .....+.. ...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~-~gg~~~~~~~~~~~~~~~~-~~~~~-~~~~~l~~~~~~~gv~~~~ 76 (300)
T TIGR01292 2 DVIIIGAGPAGLTAAIYAARAN--LKTLIIEGME-PGGQLTTTTEVENYPGFPE-GISGP-ELMEKMKEQAVKFGAEIIY 76 (300)
T ss_pred cEEEECCCHHHHHHHHHHHHCC--CCEEEEeccC-CCcceeecccccccCCCCC-CCChH-HHHHHHHHHHHHcCCeEEE
Confidence 5789999999999999999999 9999999876 78877632 1233210 00000 00000000 000
Q ss_pred ccccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHH
Q psy12350 809 KDLMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDI 884 (1129)
Q Consensus 809 ~~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~ei 884 (1129)
....... + +.........+.....++.+|+.|+.|.+||.+.|.+..+|...+.+...+++|+|+|||+|.+|+|+
T Consensus 77 ~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~~~e~ 156 (300)
T TIGR01292 77 EEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEE 156 (300)
T ss_pred EEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChhhcCCCEEEEECCChHHHHH
Confidence 0000000 0 00000001112223334449999999999998877777777665555556789999999999999999
Q ss_pred HHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EEec---CC
Q psy12350 885 TLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VRFQ---DG 955 (1129)
Q Consensus 885 A~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~~~---dG 955 (1129)
|..|++.+++|+++.+.+... ..+.+. ..+.. ..+|++..+ +.++++++ +++. +|
T Consensus 157 a~~l~~~~~~V~~v~~~~~~~-~~~~~~-------------~~l~~--~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~g 220 (300)
T TIGR01292 157 ALYLTRIAKKVTLVHRRDKFR-AEKILL-------------DRLRK--NPNIEFLWNSTVKEIVGDNKVEGVKIKNTVTG 220 (300)
T ss_pred HHHHHhhcCEEEEEEeCcccC-cCHHHH-------------HHHHh--CCCeEEEeccEEEEEEccCcEEEEEEEecCCC
Confidence 999999999999998754221 011000 01110 115666543 77776543 4443 24
Q ss_pred --cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHc
Q psy12350 956 --SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 956 --~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~ 1031 (1129)
.++++|.||+|||++++.+++... +.++.++...+... +.+++||||++|++.. ......+..|++.+|..+.
T Consensus 221 ~~~~i~~D~vi~a~G~~~~~~~l~~~--~~~~~~g~i~v~~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~ 297 (300)
T TIGR01292 221 EEEELKVDGVFIAIGHEPNTELLKGL--LELDEGGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAE 297 (300)
T ss_pred ceEEEEccEEEEeeCCCCChHHHHHh--heecCCCcEEECCC-CccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHH
Confidence 468999999999999998777653 44444333344444 4568999999999886 3456788899999988764
No 79
>KOG1335|consensus
Probab=99.78 E-value=2.2e-18 Score=181.02 Aligned_cols=292 Identities=14% Similarity=0.174 Sum_probs=174.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCC-CCccCcccccccccCCccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYG-LPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~-~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
..+||+|||+||+|..||..+++ .|++.+++|++..+||+|. +.||.+.. +...|.+|.-++.. .++-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ--lGlkTacvEkr~~LGGTcL---nvGcIPSKALL~nSh~yh~~q~~----~~~~-- 106 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ--LGLKTACVEKRGTLGGTCL---NVGCIPSKALLNNSHLYHEAQHE----DFAS-- 106 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH--hcceeEEEeccCccCceee---eccccccHHHhhhhHHHHHHhhh----HHHh--
Confidence 35899999999999999999999 7799999999999999999 46663211 12233344432221 1111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcC--CcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFN--LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
+... ..+.-...+.+.+....-++.+. +. +..-..+|+.+...+...+..++.+...+ ++.....-. .+
T Consensus 107 rGi~--vs~~~~dl~~~~~~k~~~vk~Lt~gi~-~lfkknkV~~~kG~gsf~~p~~V~v~k~d-g~~~ii~aK-----nI 177 (506)
T KOG1335|consen 107 RGID--VSSVSLDLQAMMKAKDNAVKQLTGGIE-NLFKKNKVTYVKGFGSFLDPNKVSVKKID-GEDQIIKAK-----NI 177 (506)
T ss_pred cCcc--ccceecCHHHHHHHHHHHHHHHhhHHH-HHhhhcCeEEEeeeEeecCCceEEEeccC-CCceEEeee-----eE
Confidence 1000 01123355666666666565552 21 11223456666555555566667665432 223333333 89
Q ss_pred EEecccCC-CCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 165 QLMQGHVT-LPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 165 vvAtG~~~-~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||||| + .+..|.|.-+.... .++...+
T Consensus 178 iiATG--SeV~~~PGI~IDekkI--------------------------------------------------VSStgAL 205 (506)
T KOG1335|consen 178 IIATG--SEVTPFPGITIDEKKI--------------------------------------------------VSSTGAL 205 (506)
T ss_pred EEEeC--CccCCCCCeEecCceE--------------------------------------------------EecCCcc
Confidence 99999 4 33334332111111 1222222
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCc
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDI 309 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v 309 (1129)
....-++.++ | +|+|++|+|++..+.++|.+||+++--+.+.+..+.+ ++.+.+.+
T Consensus 206 sL~~vPk~~~------v----iG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQgikF~l~tkv 275 (506)
T KOG1335|consen 206 SLKEVPKKLT------V----IGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQGIKFKLGTKV 275 (506)
T ss_pred chhhCcceEE------E----EcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhcCceeEeccEE
Confidence 2112222222 3 8999999999999999999999999888776654433 45667777
Q ss_pred eEEcC--Cc---eEEcC---CC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 310 AELTP--TG---VRFQD---GS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 310 ~~~~~--~~---v~~~d---g~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
...+. ++ |.+.+ |+ ++++|++++|+|-+|-..-|. +..++..|....++...+ |....|+++.+|..-
T Consensus 276 ~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~~-f~t~vP~i~~IGDv~ 354 (506)
T KOG1335|consen 276 TSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNTR-FQTKVPHIYAIGDVT 354 (506)
T ss_pred EEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceecccc-ccccCCceEEecccC
Confidence 77653 32 44433 33 569999999999886555443 224455555444443332 346789999999886
Q ss_pred cccc
Q psy12350 379 RYPF 382 (1129)
Q Consensus 379 ~~~~ 382 (1129)
.-|+
T Consensus 355 ~gpM 358 (506)
T KOG1335|consen 355 LGPM 358 (506)
T ss_pred Ccch
Confidence 6665
No 80
>PLN02546 glutathione reductase
Probab=99.78 E-value=2.5e-19 Score=213.28 Aligned_cols=267 Identities=16% Similarity=0.222 Sum_probs=168.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc---------cCCcCcccccCCCCCCCCCCCCccccccCccc------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ---------ADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLK------ 804 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~---------~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~------ 804 (1129)
.+++|||+|++|+.+|+.+.+.| .+|+|+|+ ...+||+|.+ .|| +|.+...+....
T Consensus 80 yDvvVIG~GpaG~~aA~~aa~~G--~~V~liE~~~~~~~~~~~~~~GGtC~n---~GC----iPsK~l~~aa~~~~~~~~ 150 (558)
T PLN02546 80 FDLFTIGAGSGGVRASRFASNFG--ASAAVCELPFATISSDTLGGVGGTCVL---RGC----VPKKLLVYASKYSHEFEE 150 (558)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeccccccccccCCCccCcccC---cch----HHHHHHHHHHHHHHHHHh
Confidence 47899999999999999999999 99999996 2568999984 466 232111100000
Q ss_pred -------------cccc-------cccccc----------cCCCCC--------CC----CCCCCCChhhhhhccCCCCC
Q psy12350 805 -------------TNLP-------KDLMEL----------CGYGHK--------GN----ADKSYIGAKDVLENYNHPIY 842 (1129)
Q Consensus 805 -------------~~~~-------~~~~~~----------~~~~~~--------~~----~~~~~~~~~~v~~~~~~P~~ 842 (1129)
.+.. .....+ ....+- .. ....+....-++++|+.|..
T Consensus 151 ~~~~g~~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p~~ 230 (558)
T PLN02546 151 SRGFGWKYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRPFI 230 (558)
T ss_pred hhhcCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCCCC
Confidence 0000 000000 000000 00 00011122223339999999
Q ss_pred CCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEe
Q psy12350 843 PEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLS 921 (1129)
Q Consensus 843 P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~ 921 (1129)
|++||.+. ++++.+..+.. ..+|+|+|||+|.+|+|+|..|++.+.+|+++++.+..++. .+.......+.+
T Consensus 231 P~IpG~~~----v~~~~~~l~~~-~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L-- 303 (558)
T PLN02546 231 PDIPGIEH----AIDSDAALDLP-SKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQM-- 303 (558)
T ss_pred CCCCChhh----ccCHHHHHhcc-ccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHH--
Confidence 99999753 34443333222 35799999999999999999999999999999886654332 222221111111
Q ss_pred cCCccccccCCCCCeEEcCC--eeEEeC--Cc---EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccc
Q psy12350 922 HHSERVTSLCLPNNVVLKPD--VAELTP--TG---VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 922 ~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~---V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly 993 (1129)
. ..+|+++.+ +.++.+ ++ +.+.+++.+.+|.||+|+|++|+..+|. +..|+++++++...+.
T Consensus 304 -------~---~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD 373 (558)
T PLN02546 304 -------S---LRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVD 373 (558)
T ss_pred -------H---HCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeEC
Confidence 0 125666544 666642 22 3344555456899999999999988753 4477887765533333
Q ss_pred cceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 994 KHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.+ +.++.||||++||+... ...+.+..|++.+|+.+.|.
T Consensus 374 ~~-l~Ts~p~IYAaGDv~~~~~l~~~A~~~g~~~a~~i~g~ 413 (558)
T PLN02546 374 EY-SRTSVPSIWAVGDVTDRINLTPVALMEGGALAKTLFGN 413 (558)
T ss_pred CC-ceeCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 33 24589999999999765 45689999999999999874
No 81
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.78 E-value=1.3e-18 Score=205.86 Aligned_cols=265 Identities=21% Similarity=0.263 Sum_probs=165.8
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEccc-----C---CcCcccccCCCCCCCCCCCCccccccC-----c-----
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA-----D---NIGGTWLYTEHIGCDQYGLPVHSSMYK-----S----- 802 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~-----~---~~GG~w~~~~~~g~~~~g~p~~~~~y~-----~----- 802 (1129)
+++|||+|++|+.+|..+.+.| .+|+++|+. . .+||+|.. .|| +|.+..... .
T Consensus 4 DvvVIG~G~aG~~aA~~aa~~G--~~v~lie~~~~~~~~~~~~~GGtc~n---~GC----iPsK~l~~~a~~~~~~~~~~ 74 (484)
T TIGR01438 4 DLIVIGGGSGGLAAAKEAADYG--AKVMLLDFVTPTPLGTRWGIGGTCVN---VGC----IPKKLMHQAALLGQALKDSR 74 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCCcceeccccccc---cCc----CchhHHHHHHHHHHHHhhhh
Confidence 7899999999999999999999 999999973 1 58999984 355 221110000 0
Q ss_pred ---cc------cccc--------------ccc-cccc--CCC-------CCCC---------C-CCCCCChhhhhhccCC
Q psy12350 803 ---LK------TNLP--------------KDL-MELC--GYG-------HKGN---------A-DKSYIGAKDVLENYNH 839 (1129)
Q Consensus 803 ---~~------~~~~--------------~~~-~~~~--~~~-------~~~~---------~-~~~~~~~~~v~~~~~~ 839 (1129)
+. .+.. ... ..+. ... +... . ...+....-++++|+.
T Consensus 75 ~~g~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~ 154 (484)
T TIGR01438 75 NYGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGER 154 (484)
T ss_pred hcCcccCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCC
Confidence 00 0000 000 0000 000 0000 0 0011122233349999
Q ss_pred CCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-chhhhhccccEE
Q psy12350 840 PIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-ITLDIATRASTV 918 (1129)
Q Consensus 840 P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-~~~~~~~~~~~~ 918 (1129)
|+.|++||.++ ..+++.+..+... ..++|+|||+|.+|+|+|..|++.|.+||++.+. ..++ +.+.+.....+.
T Consensus 155 p~~p~ipG~~~---~~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-~~l~~~d~~~~~~l~~~ 229 (484)
T TIGR01438 155 PRYPGIPGAKE---LCITSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDCANKVGEH 229 (484)
T ss_pred CCCCCCCCccc---eeecHHHhhcccc-cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec-ccccccCHHHHHHHHHH
Confidence 99999999854 2344444433222 3578999999999999999999999999999874 3222 222222222111
Q ss_pred EEecCCccccccCCCCCeEEcCC--eeEEeC--Cc--EEecCCc---EeeccEEEEccCccCcCCCCC-CCCCeeecCC-
Q psy12350 919 FLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG--VRFQDGS---YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNK- 987 (1129)
Q Consensus 919 ~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~---~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~- 987 (1129)
+. ..+|+++.+ +.+++. +. |++.+|+ ++++|.||+|+|++|+..+|. +..|+++++.
T Consensus 230 L~------------~~gV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~ 297 (484)
T TIGR01438 230 ME------------EHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKT 297 (484)
T ss_pred HH------------HcCCEEEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcC
Confidence 11 125666554 555542 22 5566663 689999999999999988764 4577887643
Q ss_pred cccccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHcC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~g 1032 (1129)
+...+. ..+.++.|+||++|++.. ....+.+..||+.+++.+.|
T Consensus 298 G~I~Vd-~~~~Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~ 343 (484)
T TIGR01438 298 GKIPAD-EEEQTNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS 343 (484)
T ss_pred CeEecC-CCcccCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence 322222 234468999999999874 23568899999999999876
No 82
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.78 E-value=1.4e-18 Score=205.29 Aligned_cols=270 Identities=17% Similarity=0.224 Sum_probs=171.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC-cCcccccCCCCCCCCCCCCccccc--------cCccccc----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN-IGGTWLYTEHIGCDQYGLPVHSSM--------YKSLKTN---- 806 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~-~GG~w~~~~~~g~~~~g~p~~~~~--------y~~~~~~---- 806 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||++. +||+|.. .||- |.+..+ |..+...
T Consensus 4 ~dvvVIG~GpaG~~aA~~l~~~g--~~V~liE~~~~~~GG~c~~---~gci----P~k~~~~~~~~~~~~~~~~~~~~~~ 74 (438)
T PRK07251 4 YDLIVIGFGKAGKTLAAKLASAG--KKVALVEESKAMYGGTCIN---IGCI----PTKTLLVAAEKNLSFEQVMATKNTV 74 (438)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC--CEEEEEecCCcccceeeec---Cccc----cchHhhhhhhcCCCHHHHHHHHHHH
Confidence 57899999999999999999999 99999999865 6999863 3442 211100 0000000
Q ss_pred ---c---ccccccccCCC---------------CCC-CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC
Q psy12350 807 ---L---PKDLMELCGYG---------------HKG-NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP 864 (1129)
Q Consensus 807 ---~---~~~~~~~~~~~---------------~~~-~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~ 864 (1129)
. ......-.... ... +....+....-++++|+.|+.|++||.+++. .++++.++...
T Consensus 75 ~~~~~~~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~~-~v~~~~~~~~~ 153 (438)
T PRK07251 75 TSRLRGKNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADSK-HVYDSTGIQSL 153 (438)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCCC-cEEchHHHhcc
Confidence 0 00000000000 000 0001122233444599999999999986543 35565555443
Q ss_pred CCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--
Q psy12350 865 EPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD-- 941 (1129)
Q Consensus 865 ~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-- 941 (1129)
.. .+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+.....+ .+. ..+|++..+
T Consensus 154 ~~-~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~---------~l~---~~GI~i~~~~~ 220 (438)
T PRK07251 154 ET-LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQ---------YME---EDGITFLLNAH 220 (438)
T ss_pred hh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHH---------HHH---HcCCEEEcCCE
Confidence 32 4789999999999999999999999999999987665432 2222211111 011 125666543
Q ss_pred eeEEeCC--cE-EecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEcccccc-chh
Q psy12350 942 VAELTPT--GV-RFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLF 1016 (1129)
Q Consensus 942 i~~v~~~--~V-~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~ 1016 (1129)
+.+++.+ .+ ...+|+++++|.||+|||++|+.+.+. +..++.+++++...+..+ +.++.||||++|++... ...
T Consensus 221 V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~-~~t~~~~IyaiGD~~~~~~~~ 299 (438)
T PRK07251 221 TTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDY-CQTSVPGVFAVGDVNGGPQFT 299 (438)
T ss_pred EEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCC-cccCCCCEEEeeecCCCcccH
Confidence 7777543 33 334677899999999999999987654 224566655543334333 34589999999998765 345
Q ss_pred HHHHHHHHHHHHHHcCC
Q psy12350 1017 NLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1017 ~~~e~qa~~~a~~l~g~ 1033 (1129)
+.+..|++.++..+.|.
T Consensus 300 ~~a~~~~~~~~~~~~~~ 316 (438)
T PRK07251 300 YISLDDFRIVFGYLTGD 316 (438)
T ss_pred hHHHHHHHHHHHHHcCC
Confidence 77888899988888764
No 83
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.78 E-value=1.4e-18 Score=206.64 Aligned_cols=271 Identities=18% Similarity=0.232 Sum_probs=167.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC--------CcCcccccCCCCCCCC--------------------C
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD--------NIGGTWLYTEHIGCDQ--------------------Y 791 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~--------~~GG~w~~~~~~g~~~--------------------~ 791 (1129)
.+++|||+||+|+.+|..+.+.| .+|+|+|+.. .+||+|.. .||-+ +
T Consensus 6 yDviVIG~GpaG~~AA~~aa~~G--~~V~lie~~~~~~~~~~~~~GG~C~n---~gciPsK~l~~~a~~~~~~~~~~~~~ 80 (499)
T PTZ00052 6 YDLVVIGGGSGGMAAAKEAAAHG--KKVALFDYVKPSTQGTKWGLGGTCVN---VGCVPKKLMHYAANIGSIFHHDSQMY 80 (499)
T ss_pred cCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCCCCccccccccceecc---ccccchHHHHHHHHHHHHHHhHHhcC
Confidence 48899999999999999999999 9999999732 48999863 34421 0
Q ss_pred CCCcc-ccccCccccccccccccc----------cCC-------CCCCC---------CCCCCCChhhhhhccCCCCCCC
Q psy12350 792 GLPVH-SSMYKSLKTNLPKDLMEL----------CGY-------GHKGN---------ADKSYIGAKDVLENYNHPIYPE 844 (1129)
Q Consensus 792 g~p~~-~~~y~~~~~~~~~~~~~~----------~~~-------~~~~~---------~~~~~~~~~~v~~~~~~P~~P~ 844 (1129)
|+... ...+..+..........+ ... .+... ....+....-++++|+.|..|.
T Consensus 81 g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~ 160 (499)
T PTZ00052 81 GWKTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPE 160 (499)
T ss_pred CCCCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCC
Confidence 11000 000000000000000000 000 00000 0001222333445999999985
Q ss_pred -CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecC
Q psy12350 845 -FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHH 923 (1129)
Q Consensus 845 -i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1129)
+||.+.+ .+.+.+...... .+++|+|||+|.+|+|+|..|++.|.+||++.+......+.+.......+.
T Consensus 161 ~i~G~~~~---~~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~----- 231 (499)
T PTZ00052 161 DVPGAKEY---SITSDDIFSLSK-DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEY----- 231 (499)
T ss_pred CCCCccce---eecHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHH-----
Confidence 9997642 334443332222 368999999999999999999999999999976422111222222111111
Q ss_pred CccccccCCCCCeEEcCC--eeEEeC--C--cEEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccce
Q psy12350 924 SERVTSLCLPNNVVLKPD--VAELTP--T--GVRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHT 996 (1129)
Q Consensus 924 ~~~~~~~~~~~~V~~~~~--i~~v~~--~--~V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~ 996 (1129)
+. ..+|++..+ +.+++. + .+.+.+|+++++|.||+|+|++|+..+|. +.+|+++++++.......
T Consensus 232 ----l~---~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~- 303 (499)
T PTZ00052 232 ----MK---EQGTLFLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND- 303 (499)
T ss_pred ----HH---HcCCEEEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC-
Confidence 10 125666554 555543 2 26677899999999999999999998875 457888876553222222
Q ss_pred eecCCCCcEEEcccccc--chhHHHHHHHHHHHHHHcCC
Q psy12350 997 INIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 304 -~Ts~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~g~ 341 (499)
T PTZ00052 304 -CTNIPNIFAVGDVVEGRPELTPVAIKAGILLARRLFKQ 341 (499)
T ss_pred -cCCCCCEEEEEEecCCCcccHHHHHHHHHHHHHHHhCC
Confidence 5689999999998742 45689999999999999864
No 84
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.78 E-value=1.8e-18 Score=205.80 Aligned_cols=267 Identities=16% Similarity=0.243 Sum_probs=170.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc-----cCcc------------
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM-----YKSL------------ 803 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~-----y~~~------------ 803 (1129)
+++|||+||+|+.+|..+.+.| .+|+|+|+.. +||+|.. .|| +|.+... +...
T Consensus 2 DvvVIGaGpaG~~aA~~aa~~g--~~v~lie~~~-~GG~c~n---~gc----iPsk~l~~~~~~~~~~~~~~~g~~~~~~ 71 (463)
T TIGR02053 2 DLVIIGSGAAAFAAAIKAAELG--ASVAMVERGP-LGGTCVN---VGC----VPSKMLLRAAEVAHYARKPPFGGLAATV 71 (463)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCc-ccCCeee---ecE----EccHHHHHHHHHHHHhhccCcccccCCC
Confidence 6789999999999999999999 9999999865 9999973 354 2211100 0000
Q ss_pred ccccc----------cccc------ccc--CCCC-------CCC------CCC-CCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 804 KTNLP----------KDLM------ELC--GYGH-------KGN------ADK-SYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 804 ~~~~~----------~~~~------~~~--~~~~-------~~~------~~~-~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
..+.. +.+. .+. +..+ ... ... .+....-++.+|+.|+.|++||.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~ 151 (463)
T TIGR02053 72 AVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEA 151 (463)
T ss_pred ccCHHHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccC
Confidence 00000 0000 000 0000 000 000 01112234449999999999998764
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
.++++.+..+... .+++|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +.
T Consensus 152 --~~~~~~~~~~~~~-~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~---------l~- 218 (463)
T TIGR02053 152 --GYLTSEEALALDR-IPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEA---------LA- 218 (463)
T ss_pred --ceECchhhhCccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHH---------HH-
Confidence 3566655544332 3689999999999999999999999999999987655432 12221111111 10
Q ss_pred CCCCCeEEcCC--eeEEeCC--c--EEec---CCcEeeccEEEEccCccCcCCCC-CCCCCeeecCCcccccccceeecC
Q psy12350 931 CLPNNVVLKPD--VAELTPT--G--VRFQ---DGSYEQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLYKHTINIE 1000 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~~--~--V~~~---dG~~~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly~~~~~~~ 1000 (1129)
..+|++..+ |.+++.+ . +++. +++++++|.||+|+|++|+.+.| -+..++++++++...+..+ +.++
T Consensus 219 --~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~Ts 295 (463)
T TIGR02053 219 --EEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET-LRTS 295 (463)
T ss_pred --HcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC-ccCC
Confidence 125666554 7777543 2 3443 23578999999999999998744 2346777776554334333 3468
Q ss_pred CCCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1001 HPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1001 ~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.||||++|++.... ..+.+..||+.+|..+.+.
T Consensus 296 ~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~ 329 (463)
T TIGR02053 296 NPGIYAAGDVTGGLQLEYVAAKEGVVAAENALGG 329 (463)
T ss_pred CCCEEEeeecCCCcccHhHHHHHHHHHHHHhcCC
Confidence 99999999987653 4589999999999999875
No 85
>KOG1336|consensus
Probab=99.78 E-value=9.3e-19 Score=191.88 Aligned_cols=280 Identities=15% Similarity=0.197 Sum_probs=190.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+.|+|||+|++|..|+.++++.++-.+++++-+...+ .|+ +..+|+......
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~----------------------pyd--r~~Ls~~~~~~~--- 126 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL----------------------PYD--RARLSKFLLTVG--- 126 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC----------------------ccc--chhcccceeecc---
Confidence 57999999999999999999998887788888764421 122 233333332211
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
+++.....++.+..++ ...+++.|+.++- ..++ +..+.++...|+ +|+|||
T Consensus 127 ------------~~~a~r~~e~Yke~gI--e~~~~t~v~~~D~-----~~K~-----l~~~~Ge~~kys-----~LilAT 177 (478)
T KOG1336|consen 127 ------------EGLAKRTPEFYKEKGI--ELILGTSVVKADL-----ASKT-----LVLGNGETLKYS-----KLIIAT 177 (478)
T ss_pred ------------ccccccChhhHhhcCc--eEEEcceeEEeec-----cccE-----EEeCCCceeecc-----eEEEee
Confidence 1122222345667776 7889999998874 2222 234445677899 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|+.|++||....++ ..++.....+ ....... ..
T Consensus 178 G--s~~~~l~~pG~~~~nv------------~~ireieda~----------------------------~l~~~~~--~~ 213 (478)
T KOG1336|consen 178 G--SSAKTLDIPGVELKNV------------FYLREIEDAN----------------------------RLVAAIQ--LG 213 (478)
T ss_pred c--CccccCCCCCccccce------------eeeccHHHHH----------------------------HHHHHhc--cC
Confidence 9 7899999988432211 0111100000 0000110 12
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELT 313 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~ 313 (1129)
.++++ +|+|++|+|+|..|...+++||++++.+.+++..+.. ++.+.+.+.+++
T Consensus 214 ~~vV~-----------vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~ 282 (478)
T KOG1336|consen 214 GKVVC-----------VGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLE 282 (478)
T ss_pred ceEEE-----------ECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecc
Confidence 33333 8999999999999999999999999998877643321 466788888887
Q ss_pred CCc------eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccccccccc
Q psy12350 314 PTG------VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPFLHESC 387 (1129)
Q Consensus 314 ~~~------v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~~~~~~ 387 (1129)
++. |.+.||+++++|.||+++|-+++.+|++. +...+....++.+...- ++.|++|.+|...++|+-...-
T Consensus 283 ~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~--g~~~~~~G~i~V~~~f~-t~~~~VyAiGDva~fp~~~~~~ 359 (478)
T KOG1336|consen 283 GNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK--GILLDSKGGIKVDEFFQ-TSVPNVYAIGDVATFPLKGYGE 359 (478)
T ss_pred cCCCCcEEEEEeccCCEeccCeEEEeeccccccccccc--cceecccCCEeehhcee-eccCCcccccceeecccccccc
Confidence 542 78899999999999999999999999984 45566666666655433 6699999999999888866445
Q ss_pred ceeeehhhcccccccc
Q psy12350 388 GIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 388 ~~~~~a~~~~~~~~~~ 403 (1129)
..+ +-++-.++++++
T Consensus 360 ~~~-v~H~~~A~~~g~ 374 (478)
T KOG1336|consen 360 DRR-VEHVDHARASGR 374 (478)
T ss_pred ccc-chHHHHHHHHHH
Confidence 544 555555555555
No 86
>KOG0404|consensus
Probab=99.78 E-value=2.6e-18 Score=167.16 Aligned_cols=264 Identities=15% Similarity=0.237 Sum_probs=169.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc----CCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT----DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~----~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
...+|+|||+|||+.+||.++++ .+.+.+|||-- ..+||+..- ..++-.
T Consensus 7 h~e~v~IiGSGPAa~tAAiYaar--aelkPllfEG~~~~~i~pGGQLtT-------------------------TT~veN 59 (322)
T KOG0404|consen 7 HNENVVIIGSGPAAHTAAIYAAR--AELKPLLFEGMMANGIAPGGQLTT-------------------------TTDVEN 59 (322)
T ss_pred eeeeEEEEccCchHHHHHHHHhh--cccCceEEeeeeccCcCCCceeee-------------------------eecccc
Confidence 34599999999999999999999 77899999952 224566552 123445
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
|++||- =....++.+.+++.+.+||. .|... .|.+++. ...-+.+.+ +......| .
T Consensus 60 fPGFPd-------gi~G~~l~d~mrkqs~r~Gt--~i~tE-tVskv~~-----sskpF~l~t----d~~~v~~~-----a 115 (322)
T KOG0404|consen 60 FPGFPD-------GITGPELMDKMRKQSERFGT--EIITE-TVSKVDL-----SSKPFKLWT----DARPVTAD-----A 115 (322)
T ss_pred CCCCCc-------ccccHHHHHHHHHHHHhhcc--eeeee-ehhhccc-----cCCCeEEEe----cCCceeee-----e
Confidence 666542 24667899999999999987 44433 3555543 222222222 11234567 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||+||| ...+...+||..+..|..+ +-++ |. -+....
T Consensus 116 vI~atG--AsAkRl~~pg~ge~~fWqr-----GiSa---------------CA---------------------VCDGaa 152 (322)
T KOG0404|consen 116 VILATG--ASAKRLHLPGEGEGEFWQR-----GISA---------------CA---------------------VCDGAA 152 (322)
T ss_pred EEEecc--cceeeeecCCCCcchHHhc-----ccch---------------hh---------------------cccCcc
Confidence 999999 5566666777533333222 0000 10 112222
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC-------CCCe--EEcCCceEEcC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF-------PNNV--VKKPDIAELTP 314 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~-------~~~i--~~~~~v~~~~~ 314 (1129)
.-+++|-..| ||||.+++|-|..|...+++|++++|++++..... ..+| ..++.+.+.-+
T Consensus 153 pifrnk~laV-----------IGGGDsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~g 221 (322)
T KOG0404|consen 153 PIFRNKPLAV-----------IGGGDSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALG 221 (322)
T ss_pred hhhcCCeeEE-----------EcCcHHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhcc
Confidence 2234444444 79999999999999999999999999997644311 1122 22333333333
Q ss_pred Cc-----eEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 315 TG-----VRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 315 ~~-----v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
++ +.+. .| +.++++-++++.|-.|+..||+. ++..|.+..+..-...-..+.|++|..|..+
T Consensus 222 d~~~l~~l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g--qve~d~~GYi~t~pgts~TsvpG~FAAGDVq 293 (322)
T KOG0404|consen 222 DGKLLNGLRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG--QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQ 293 (322)
T ss_pred CcccccceEEEecccCcccccccceeEEEecCCchhhHhcC--ceeeccCceEEeccCcccccccceeeccccc
Confidence 31 3332 23 45799999999999999999984 4666666554444455567899999999875
No 87
>PRK07846 mycothione reductase; Reviewed
Probab=99.77 E-value=1.5e-18 Score=204.28 Aligned_cols=182 Identities=18% Similarity=0.209 Sum_probs=129.3
Q ss_pred hccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhc
Q psy12350 835 ENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIAT 913 (1129)
Q Consensus 835 ~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~ 913 (1129)
++|++|+.|++||.+.. .++++.+..+.. ..+|+|+|||+|.+|+|+|..|++.|.+|+++++++..++. .+....
T Consensus 135 ATGs~p~~p~i~g~~~~--~~~~~~~~~~l~-~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~ 211 (451)
T PRK07846 135 AAGSRPVIPPVIADSGV--RYHTSDTIMRLP-ELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISE 211 (451)
T ss_pred cCCCCCCCCCCCCcCCc--cEEchHHHhhhh-hcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHH
Confidence 39999999999996531 233333332222 24799999999999999999999999999999987655432 222221
Q ss_pred cccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC--c--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecC
Q psy12350 914 RASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT--G--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVN 986 (1129)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~ 986 (1129)
...+ .+..+|+++.+ +.+++.+ + +.+.+|+++++|.||+|||++|+.+++. +..|+++++
T Consensus 212 ~l~~-------------l~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~ 278 (451)
T PRK07846 212 RFTE-------------LASKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDE 278 (451)
T ss_pred HHHH-------------HHhcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCccccCchhcCceECC
Confidence 1111 01124555443 7777543 3 5667898999999999999999998875 447888876
Q ss_pred CcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 987 KNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 987 ~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++...+..+ +.++.||||++|++.... ..+.+..||+.++.++.+.
T Consensus 279 ~G~i~Vd~~-~~Ts~p~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 325 (451)
T PRK07846 279 DGRVVVDEY-QRTSAEGVFALGDVSSPYQLKHVANHEARVVQHNLLHP 325 (451)
T ss_pred CCcEeECCC-cccCCCCEEEEeecCCCccChhHHHHHHHHHHHHHcCC
Confidence 654434333 346899999999988653 4589999999999999864
No 88
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=99.77 E-value=1.9e-18 Score=207.94 Aligned_cols=185 Identities=18% Similarity=0.175 Sum_probs=125.3
Q ss_pred hhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhh
Q psy12350 834 LENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIA 912 (1129)
Q Consensus 834 ~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~ 912 (1129)
+++|+.|.+|++++.+. ..++++.+...... .+++|+|||+|.+|+|+|..+++.|++||++++.+..++. .+...
T Consensus 280 IATGS~P~~P~~~~~~~--~~V~ts~d~~~l~~-lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~~~d~eis 356 (659)
T PTZ00153 280 IATGSTPNIPDNIEVDQ--KSVFTSDTAVKLEG-LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLPLLDADVA 356 (659)
T ss_pred EcCCCCCCCCCCCCCCC--CcEEehHHhhhhhh-cCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccccCCHHHH
Confidence 33999999998776543 24666555443333 3789999999999999999999999999999987765542 22222
Q ss_pred ccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EE--ecC-------C--------cEeeccEEEEccCc
Q psy12350 913 TRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VR--FQD-------G--------SYEQVDIILCCTGY 969 (1129)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~--~~d-------G--------~~~~~D~VI~aTG~ 969 (1129)
....+.++. ..+|+++.+ |++++++. +. +.+ + +++++|.||+|||+
T Consensus 357 ~~l~~~ll~-----------~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr 425 (659)
T PTZ00153 357 KYFERVFLK-----------SKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGR 425 (659)
T ss_pred HHHHHHHhh-----------cCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECc
Confidence 222221111 125666655 77775422 33 221 1 26899999999999
Q ss_pred cCcCCCCC-CCCCeeecCCccccc--ccceee---cCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 970 SNHYPFLH-ESCGIKVVNKNVQPL--YKHTIN---IEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 970 ~~~~~fl~-~~~g~~~~~~~~~~l--y~~~~~---~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+|+..+|. +..++.+++ +...+ |.++.. ...||||++||+.... ..+.+..||+.++++|.|.
T Consensus 426 ~Pnt~~L~l~~~gi~~~~-G~I~VDe~lqTs~~~~~~v~~IYAiGDv~g~~~La~~A~~qg~~aa~ni~g~ 495 (659)
T PTZ00153 426 KPNTNNLGLDKLKIQMKR-GFVSVDEHLRVLREDQEVYDNIFCIGDANGKQMLAHTASHQALKVVDWIEGK 495 (659)
T ss_pred ccCCccCCchhcCCcccC-CEEeECCCCCcCCCCCCCCCCEEEEEecCCCccCHHHHHHHHHHHHHHHcCC
Confidence 99988764 345666654 32333 333321 1269999999997643 4589999999999999885
No 89
>PRK10262 thioredoxin reductase; Provisional
Probab=99.77 E-value=3.9e-18 Score=193.00 Aligned_cols=272 Identities=13% Similarity=0.169 Sum_probs=166.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC----CCCCCCCCCCCccccccCccccccc---cc-
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT----EHIGCDQYGLPVHSSMYKSLKTNLP---KD- 810 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~----~~~g~~~~g~p~~~~~y~~~~~~~~---~~- 810 (1129)
..+++|||+|++|+++|..|.+.| +++++||+. ..||.+... .+|+..+ +++.. .+.+.+..... .+
T Consensus 6 ~~~vvIIGgGpaGl~aA~~l~~~g--~~~~~ie~~-~~gg~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 80 (321)
T PRK10262 6 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITGM-EKGGQLTTTTEVENWPGDPN-DLTGP-LLMERMHEHATKFETEI 80 (321)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CCeEEEEee-cCCCceecCceECCCCCCCC-CCCHH-HHHHHHHHHHHHCCCEE
Confidence 457899999999999999999999 899999964 688876532 2233211 00000 00000000000 00
Q ss_pred ----ccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHH
Q psy12350 811 ----LMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGL 882 (1129)
Q Consensus 811 ----~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~ 882 (1129)
..... + +....+ ...+.....++.+|+.|+.|++||.+.|.++.+|++.+.+.....+|+|+|||+|.+|+
T Consensus 81 ~~~~v~~v~~~~~~~~v~~~-~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~~~~g~~vvVvGgG~~g~ 159 (321)
T PRK10262 81 IFDHINKVDLQNRPFRLTGD-SGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAV 159 (321)
T ss_pred EeeEEEEEEecCCeEEEEec-CCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHHHcCCCEEEEECCCHHHH
Confidence 00000 0 000000 01122233445599999999999988888888898888777777899999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCC
Q psy12350 883 DITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDG 955 (1129)
Q Consensus 883 eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG 955 (1129)
|+|..|++.+++|+++.+.+.. ...+.+.....+. ....+|++..+ +.+++++ +|++.++
T Consensus 160 e~A~~l~~~~~~Vtlv~~~~~~-~~~~~~~~~~~~~------------l~~~gV~i~~~~~v~~v~~~~~~~~~v~~~~~ 226 (321)
T PRK10262 160 EEALYLSNIASEVHLIHRRDGF-RAEKILIKRLMDK------------VENGNIILHTNRTLEEVTGDQMGVTGVRLRDT 226 (321)
T ss_pred HHHHHHHhhCCEEEEEEECCcc-CCCHHHHHHHHhh------------ccCCCeEEEeCCEEEEEEcCCccEEEEEEEEc
Confidence 9999999999999999885432 1111111111111 11235776654 7888765 3666543
Q ss_pred ------cEeeccEEEEccCccCcCCCCCCCCCeeecCCccccccc----ceeecCCCCcEEEccccccc------hhHHH
Q psy12350 956 ------SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYK----HTINIEHPTMFILGVPRHTL------LFNLF 1019 (1129)
Q Consensus 956 ------~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~----~~~~~~~p~l~~iG~~~~~~------~~~~~ 1019 (1129)
+++++|.||+|+|++|+..++.. ++.+++.++ .... ....++.||||++|++.... .+...
T Consensus 227 ~~~~~~~~i~~D~vv~a~G~~p~~~l~~~--~l~~~~g~i-~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g 303 (321)
T PRK10262 227 QNSDNIESLDVAGLFVAIGHSPNTAIFEG--QLELENGYI-KVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTG 303 (321)
T ss_pred CCCCeEEEEECCEEEEEeCCccChhHhhc--cccccCCEE-EECCCCcccccccCCCCEEECeeccCCCcceEEEEehhH
Confidence 36899999999999999876653 233333222 2211 12467999999999987432 12333
Q ss_pred HHHHHHHHHHHcC
Q psy12350 1020 DLQVRLFQQLMQG 1032 (1129)
Q Consensus 1020 e~qa~~~a~~l~g 1032 (1129)
-..|..+.+++.+
T Consensus 304 ~~Aa~~~~~~l~~ 316 (321)
T PRK10262 304 CMAALDAERYLDG 316 (321)
T ss_pred HHHHHHHHHHHHh
Confidence 3444455555544
No 90
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.77 E-value=1.9e-18 Score=205.63 Aligned_cols=267 Identities=21% Similarity=0.295 Sum_probs=167.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc-----cCc--------cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM-----YKS--------LKTN 806 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~-----y~~--------~~~~ 806 (1129)
.+++|||+||+|+++|..+++.| .+|+|+|+.. +||+|.. .||- |.+... ++. ....
T Consensus 5 yDvvVIGaGpaG~~aA~~aa~~G--~~V~liE~~~-~GG~c~~---~gci----P~k~l~~~~~~~~~~~~~~~~g~~~~ 74 (462)
T PRK06416 5 YDVIVIGAGPGGYVAAIRAAQLG--LKVAIVEKEK-LGGTCLN---RGCI----PSKALLHAAERADEARHSEDFGIKAE 74 (462)
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--CcEEEEeccc-cccceee---cccC----CcHHHHHhhhHHHHHHHHHhcCcccC
Confidence 47899999999999999999999 9999999976 9999974 3442 211100 000 0000
Q ss_pred ----cccccccc------------------cCCCC--------CCCC--------CCCCCChhhhhhccCCCCCCCCCCC
Q psy12350 807 ----LPKDLMEL------------------CGYGH--------KGNA--------DKSYIGAKDVLENYNHPIYPEFKGK 848 (1129)
Q Consensus 807 ----~~~~~~~~------------------~~~~~--------~~~~--------~~~~~~~~~v~~~~~~P~~P~i~G~ 848 (1129)
......++ .+..+ .... ...+....-++++|+.|..| ||.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~~~--pg~ 152 (462)
T PRK06416 75 NVGIDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPREL--PGI 152 (462)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCCCC--CCC
Confidence 00000000 00000 0000 00111122333499999765 565
Q ss_pred CCCCCc-EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCcc
Q psy12350 849 DMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSER 926 (1129)
Q Consensus 849 ~~f~g~-~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 926 (1129)
+. .+. ++++.+..... ..+|+|+|||+|.+|+|+|..|++.|.+||++++.+..++.. +.+.....+.
T Consensus 153 ~~-~~~~v~~~~~~~~~~-~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~-------- 222 (462)
T PRK06416 153 EI-DGRVIWTSDEALNLD-EVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERA-------- 222 (462)
T ss_pred CC-CCCeEEcchHhhCcc-ccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHH--------
Confidence 42 343 44444443322 246999999999999999999999999999999876654321 1111111111
Q ss_pred ccccCCCCCeEEcCC--eeEEeCC--c--EEecCC---cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccce
Q psy12350 927 VTSLCLPNNVVLKPD--VAELTPT--G--VRFQDG---SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHT 996 (1129)
Q Consensus 927 ~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~dG---~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~ 996 (1129)
+. ..+|+++.+ +.+++++ + +.+.+| +++++|.||+|+|++|+..++. +..|+.++ ++...+..+
T Consensus 223 -l~---~~gV~i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~- 296 (462)
T PRK06416 223 -LK---KRGIKIKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQ- 296 (462)
T ss_pred -HH---HcCCEEEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCC-
Confidence 10 125666554 7777643 3 445566 6789999999999999988763 34677776 443333333
Q ss_pred eecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 997 INIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+.++.||||++|++... ...+.+..||+.+|..+.|..
T Consensus 297 ~~t~~~~VyAiGD~~~~~~~~~~A~~~g~~aa~ni~~~~ 335 (462)
T PRK06416 297 LRTNVPNIYAIGDIVGGPMLAHKASAEGIIAAEAIAGNP 335 (462)
T ss_pred CccCCCCEEEeeecCCCcchHHHHHHHHHHHHHHHcCCC
Confidence 34689999999998754 456889999999999998753
No 91
>PRK13748 putative mercuric reductase; Provisional
Probab=99.77 E-value=3.1e-18 Score=209.20 Aligned_cols=271 Identities=15% Similarity=0.173 Sum_probs=168.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPVHS-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~~~-- 797 (1129)
.+++|||+|++|+++|..+.+.| .+|+|+|++ .+||+|.+ .||-+ +|++...
T Consensus 99 ~DvvVIG~GpaG~~aA~~~~~~G--~~v~lie~~-~~GG~c~n---~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~ 172 (561)
T PRK13748 99 LHVAVIGSGGAAMAAALKAVEQG--ARVTLIERG-TIGGTCVN---VGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT 172 (561)
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--CeEEEEecC-cceeeccc---cCccccHHHHHHHHHHHHHhcccccCCccCCCCc
Confidence 58899999999999999999999 999999996 89999984 45521 0211000
Q ss_pred cccCccccc----c---cc----c-cccccCCCC--------CCC-------CC--CCCCChhhhhhccCCCCCCCCCCC
Q psy12350 798 SMYKSLKTN----L---PK----D-LMELCGYGH--------KGN-------AD--KSYIGAKDVLENYNHPIYPEFKGK 848 (1129)
Q Consensus 798 ~~y~~~~~~----~---~~----~-~~~~~~~~~--------~~~-------~~--~~~~~~~~v~~~~~~P~~P~i~G~ 848 (1129)
..+..+... . .. . +.......+ ... .. ..+....-|+++|+.|++|++||+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~ 252 (561)
T PRK13748 173 IDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASPAVPPIPGL 252 (561)
T ss_pred cCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCCC
Confidence 000000000 0 00 0 000000000 000 00 012222334449999999999998
Q ss_pred CCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCcccc
Q psy12350 849 DMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVT 928 (1129)
Q Consensus 849 ~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1129)
+.. .++++.+.... ...+|+|+|||+|.+|+|+|..|++.|++|+++.+........+.+.....+. +
T Consensus 253 ~~~--~~~~~~~~~~~-~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~---------l 320 (561)
T PRK13748 253 KET--PYWTSTEALVS-DTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAA---------F 320 (561)
T ss_pred Ccc--ceEccHHHhhc-ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHH---------H
Confidence 752 23333322111 23479999999999999999999999999999987432222222222111111 1
Q ss_pred ccCCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCC
Q psy12350 929 SLCLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 929 ~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
. ..+|++..+ +++++. +. +.+.++ ++++|.||+|+|++|+..+|. +..|+++++++...+..+ +.++.
T Consensus 321 ~---~~gI~i~~~~~v~~i~~~~~~~~v~~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~-~~Ts~ 395 (561)
T PRK13748 321 R---AEGIEVLEHTQASQVAHVDGEFVLTTGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQG-MRTSV 395 (561)
T ss_pred H---HCCCEEEcCCEEEEEEecCCEEEEEecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCC-cccCC
Confidence 0 125666544 777753 22 333444 689999999999999988653 447888876554333333 34589
Q ss_pred CCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||||++|++... ...+.+..|++.++..+.|.
T Consensus 396 ~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 428 (561)
T PRK13748 396 PHIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 428 (561)
T ss_pred CCEEEeeecCCCccchhHHHHHHHHHHHHHcCC
Confidence 999999999754 45578899999999999764
No 92
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.76 E-value=2e-18 Score=218.76 Aligned_cols=285 Identities=14% Similarity=0.157 Sum_probs=168.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||..|++ .|++|+|||+.+.+||...| .++
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~------------------------------gip--- 474 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQY------------------------------GIP--- 474 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeec------------------------------cCC---
Confidence 4799999999999999999999 66999999999999998774 011
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.+....++.+...+...++|+ .+++|+.|. + .+++.++. ....|| +|||||
T Consensus 475 -------~~rl~~e~~~~~~~~l~~~Gv--~~~~~~~vg---~--------~~~~~~l~----~~~~yD-----aViIAT 525 (1006)
T PRK12775 475 -------SFRLPRDIIDREVQRLVDIGV--KIETNKVIG---K--------TFTVPQLM----NDKGFD-----AVFLGV 525 (1006)
T ss_pred -------ccCCCHHHHHHHHHHHHHCCC--EEEeCCccC---C--------ccCHHHHh----hccCCC-----EEEEec
Confidence 111223556666666677776 778776541 1 11111111 012489 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|. ..|+.++|||.. ..| .++. .|+..+.. .....+. ..
T Consensus 526 Ga-~~pr~l~IpG~~---l~g---------------V~~a~~fL~~~~~---------------------~~~~~~~-~~ 564 (1006)
T PRK12775 526 GA-GAPTFLGIPGEF---AGQ---------------VYSANEFLTRVNL---------------------MGGDKFP-FL 564 (1006)
T ss_pred CC-CCCCCCCCCCcC---CCC---------------cEEHHHHHHHHHh---------------------cCccccc-cc
Confidence 93 257888888732 111 1111 12111100 0000000 00
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccccc-EEEEccccCCcccccC--------CC--CeEEcCCceEEc--C
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-TVFLSHHSEHVKKLRF--------PN--NVVKKPDIAELT--P 314 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-~V~lv~r~~~~~~~~~--------~~--~i~~~~~v~~~~--~ 314 (1129)
.. .+..||+|+| ||||++|+|+|..+.+.|. .|++++|+........ .+ ++.....+.++. +
T Consensus 565 ~~-~~~~Gk~VvV----IGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~ 639 (1006)
T PRK12775 565 DT-PISLGKSVVV----IGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDA 639 (1006)
T ss_pred cC-CccCCCEEEE----ECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCC
Confidence 00 0112455555 8999999999999888875 6899887643211100 11 344455566663 2
Q ss_pred Cc----eEEc-----------------CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCccccccc----ccccCC
Q psy12350 315 TG----VRFQ-----------------DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYK----HLINIE 367 (1129)
Q Consensus 315 ~~----v~~~-----------------dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~----~~~~~~ 367 (1129)
++ |.+. +|+ ++++|.||+|+|++++..++....++.++.+..+...+ ..+.++
T Consensus 640 ~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts 719 (1006)
T PRK12775 640 EGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTN 719 (1006)
T ss_pred CCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCC
Confidence 22 3331 222 47999999999999998776533344444333222222 233468
Q ss_pred CCCeEEeccccccc--ccccccceeeehhhcccccccc
Q psy12350 368 HPSMCIIGYTYRYP--FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 368 ~p~l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.|++|.+|.....| ...+..+++.+|..+...+.+.
T Consensus 720 ~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~ 757 (1006)
T PRK12775 720 LPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLG 757 (1006)
T ss_pred CCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 89999999985432 2334488888888877666554
No 93
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.76 E-value=3.8e-18 Score=202.19 Aligned_cols=268 Identities=20% Similarity=0.269 Sum_probs=168.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc-----ccCccc--------c-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS-----MYKSLK--------T- 805 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~-----~y~~~~--------~- 805 (1129)
.+++|||+||+|+.+|..+.+.| .+|+|+|+++.+||+|.. .|| +|.+.. .|+.+. .
T Consensus 4 ~DvvVIG~GpaG~~AA~~aa~~G--~~V~liE~~~~~GG~c~~---~gc----iPsK~l~~~~~~~~~~~~~~~~~~gi~ 74 (466)
T PRK06115 4 YDVVIIGGGPGGYNAAIRAGQLG--LKVACVEGRSTLGGTCLN---VGC----MPSKALLHASELYEAASGGEFAHLGIE 74 (466)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCceeeeecc---Ccc----cccHHHHHHhHHHHHHhhhhhhhcCcc
Confidence 47899999999999999999999 999999987889999874 354 222110 011000 0
Q ss_pred -----cccc--------------c---cccccCC-------CCCCC--------CC--CCCCChhhhhhccCCCCCCCCC
Q psy12350 806 -----NLPK--------------D---LMELCGY-------GHKGN--------AD--KSYIGAKDVLENYNHPIYPEFK 846 (1129)
Q Consensus 806 -----~~~~--------------~---~~~~~~~-------~~~~~--------~~--~~~~~~~~v~~~~~~P~~P~i~ 846 (1129)
+..+ . ..+-... .+... .. ..+....-++.+|++|. ++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~ip 152 (466)
T PRK06115 75 VKPTLNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLP 152 (466)
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CCC
Confidence 0000 0 0000000 00000 00 01122233445999885 467
Q ss_pred CCCCCCC-cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCC
Q psy12350 847 GKDMCQI-PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHS 924 (1129)
Q Consensus 847 G~~~f~g-~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~ 924 (1129)
|.+. .+ .++++.+..... ..+|+|+|||+|.+|+|+|..+++.|++||++++.+..++. .+.......+.
T Consensus 153 g~~~-~~~~~~~~~~~~~~~-~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~------ 224 (466)
T PRK06115 153 GVTI-DNQRIIDSTGALSLP-EVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKA------ 224 (466)
T ss_pred CCCC-CCCeEECHHHHhCCc-cCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHH------
Confidence 7642 33 355555444332 24799999999999999999999999999999987655432 11111111111
Q ss_pred ccccccCCCCCeEEcCC--eeEEeC--CcE--Eec---CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCccccc
Q psy12350 925 ERVTSLCLPNNVVLKPD--VAELTP--TGV--RFQ---DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPL 992 (1129)
Q Consensus 925 ~~~~~~~~~~~V~~~~~--i~~v~~--~~V--~~~---dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~l 992 (1129)
+. ..+|+++.+ +.++++ +++ .+. +| +++++|.||+|+|++|+...|. +..|+.+++++.. .
T Consensus 225 ---l~---~~gV~i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G~~-v 297 (466)
T PRK06115 225 ---LT---KQGMKFKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRGML-A 297 (466)
T ss_pred ---HH---hcCCEEEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCCEE-E
Confidence 11 125666544 777764 233 332 23 4689999999999999988664 3457777655432 2
Q ss_pred ccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCCC
Q psy12350 993 YKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 993 y~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.. ...++.||||++|++.... ..+.+..||+.+++.+.|..
T Consensus 298 d~-~~~Ts~~~IyA~GD~~~~~~la~~A~~~g~~aa~~i~~~~ 339 (466)
T PRK06115 298 ND-HHRTSVPGVWVIGDVTSGPMLAHKAEDEAVACIERIAGKA 339 (466)
T ss_pred CC-CeecCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 22 2456899999999998653 45899999999999998753
No 94
>KOG4716|consensus
Probab=99.76 E-value=5.9e-18 Score=174.50 Aligned_cols=307 Identities=16% Similarity=0.203 Sum_probs=188.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc--------CCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT--------DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~--------~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
-.+|.+|||||.+||+|||.++. .|.+|.++|-- -.+||+|. +.|| -++..|.+. ..+-+
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGlGGTCv---NVGC-----IPKKLMHQA--allG~ 85 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGLGGTCV---NVGC-----IPKKLMHQA--ALLGE 85 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCccccCceee---eccc-----ccHHHHHHH--HHHHH
Confidence 45899999999999999999999 67999999831 23789998 4554 334444442 11222
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEec-eeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVN-KNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.+.+-..|.|......--+.+..+.+-.++..+..+-.-++.++ .+|+.+...+...+..++..+.. .++......+
T Consensus 86 al~da~kyGW~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~-~gk~~~~ta~- 163 (503)
T KOG4716|consen 86 ALHDARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNK-KGKERFLTAE- 163 (503)
T ss_pred HHHHHHhhCCCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecC-CCceEEeecc-
Confidence 33333445554332234557788888888877777754455553 35666665555555566655442 2233333444
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
.+||||| .+|+.|+|||..+--. +
T Consensus 164 ----~fvIatG--~RPrYp~IpG~~Ey~I--------------------------------------------------T 187 (503)
T KOG4716|consen 164 ----NFVIATG--LRPRYPDIPGAKEYGI--------------------------------------------------T 187 (503)
T ss_pred ----eEEEEec--CCCCCCCCCCceeeee--------------------------------------------------c
Confidence 8999999 9999999998533211 1
Q ss_pred cccccccccc-cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC--CC-----------CeE
Q psy12350 239 CSEDFTEFRK-DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF--PN-----------NVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~-~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~--~~-----------~i~ 304 (1129)
+.+-|..... .|.+| ||+|++|+|.|..|+..|-+||+..|+-.+..+.. .+ ++.
T Consensus 188 SDDlFsl~~~PGkTLv-----------VGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~m~~~Gikf~ 256 (503)
T KOG4716|consen 188 SDDLFSLPYEPGKTLV-----------VGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEHMEERGIKFL 256 (503)
T ss_pred ccccccccCCCCceEE-----------EccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHHHHHhCCcee
Confidence 1222221111 23333 69999999999999999999999998865533210 00 111
Q ss_pred Ec---CCceEEcCCc--eEEcC---C--CEeecCEEEEcccccccCCCCC-CCCCeEeecCc-ccccccccccCCCCCeE
Q psy12350 305 KK---PDIAELTPTG--VRFQD---G--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKN-VQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 305 ~~---~~v~~~~~~~--v~~~d---g--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~-~~~l~~~~~~~~~p~l~ 372 (1129)
.. ..|+.+++.. |...+ + -+.+.|+|+||.|-+....-|. +..++.++... .++. ...-..+.|.+|
T Consensus 257 ~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v-~~~e~t~vp~vy 335 (503)
T KOG4716|consen 257 RKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPV-DDEEATNVPYVY 335 (503)
T ss_pred ecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCcccc-ChHHhcCCCceE
Confidence 11 2344554444 22221 2 2348999999999987655432 23455654322 2221 222236789999
Q ss_pred Eecccc-----cccccccccceeeehhhccc
Q psy12350 373 IIGYTY-----RYPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~-----~~~~~~~~~~~~~~a~~~~~ 398 (1129)
.+|..- ..|++. |.+|.+|+.+-+
T Consensus 336 AvGDIl~~kpELTPvAI--qsGrlLa~Rlf~ 364 (503)
T KOG4716|consen 336 AVGDILEDKPELTPVAI--QSGRLLARRLFA 364 (503)
T ss_pred EecceecCCcccchhhh--hhchHHHHHHhc
Confidence 999762 468887 888887775543
No 95
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=99.76 E-value=1e-18 Score=194.61 Aligned_cols=277 Identities=18% Similarity=0.183 Sum_probs=173.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc-ccccCCCCCCCCCCCCccccccC--cccc-c--ccccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWLYTEHIGCDQYGLPVHSSMYK--SLKT-N--LPKDLME 813 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG-~w~~~~~~g~~~~g~p~~~~~y~--~~~~-~--~~~~~~~ 813 (1129)
-.++|+|+|++|+.+++.|.+..++.+++++|+++..-= .|.+.--.|. ++.....++ .+.. + ..-..-+
T Consensus 4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~----l~~~~i~~p~~~~~~~~~~v~~~~~~ 79 (405)
T COG1252 4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGT----LSESEIAIPLRALLRKSGNVQFVQGE 79 (405)
T ss_pred ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCC----CChhheeccHHHHhcccCceEEEEEE
Confidence 357899999999999999988632488999999874210 1111111110 000000000 0000 0 0000000
Q ss_pred ccCCCCCCC-----CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeecc-----------CCCCCCCCC----CeEE
Q psy12350 814 LCGYGHKGN-----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRD-----------YRTPEPFAG----KQAV 873 (1129)
Q Consensus 814 ~~~~~~~~~-----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~-----------~~~~~~~~g----k~Vv 873 (1129)
..+...... ....+....-|+..|+.+..+.+||..++.-.+-...+ +...+.... .+|+
T Consensus 80 V~~ID~~~k~V~~~~~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~ 159 (405)
T COG1252 80 VTDIDRDAKKVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIV 159 (405)
T ss_pred EEEEcccCCEEEeCCCccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEE
Confidence 011111110 01223334455569999999999998774311110000 011111111 3799
Q ss_pred EEcCCccHHHHHHHHHhcCC-------------EEEEEecCCCCccchh-hhhccccEEEEecCCccccccCCCCCeEEc
Q psy12350 874 VVGSGQSGLDITLDIATTGK-------------QAVVVGSGQSGLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVLK 939 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~-------------~V~vv~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 939 (1129)
|||||.+|+|+|.+|++... +|+++++++..+++.+ .+...+.+.+... +|++.
T Consensus 160 IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~------------GV~v~ 227 (405)
T COG1252 160 IVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKL------------GVEVL 227 (405)
T ss_pred EECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHC------------CCEEE
Confidence 99999999999999987532 8999999998887654 3444444332222 56665
Q ss_pred CC--eeEEeCCcEEecCCcE-eeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc---
Q psy12350 940 PD--VAELTPTGVRFQDGSY-EQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--- 1013 (1129)
Q Consensus 940 ~~--i~~v~~~~V~~~dG~~-~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--- 1013 (1129)
.+ |+++++++|++++|.+ +++|+||||+|.+++ |++.+-.+.+.+..+...+...+..+++||||++||+...
T Consensus 228 l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~-~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~IFa~GD~A~~~~~ 306 (405)
T COG1252 228 LGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS-PLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDCAAVIDP 306 (405)
T ss_pred cCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC-hhhhhcChhhhccCCCEEeCCCcccCCCCCeEEEeccccCCCC
Confidence 54 9999999999999995 999999999999997 6565413566665555566777778999999999998642
Q ss_pred ----chhHHHHHHHHHHHHHHcCC
Q psy12350 1014 ----LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1014 ----~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
...+.++.||+++|+++...
T Consensus 307 ~p~P~tAQ~A~Qqg~~~a~ni~~~ 330 (405)
T COG1252 307 RPVPPTAQAAHQQGEYAAKNIKAR 330 (405)
T ss_pred CCCCChhHHHHHHHHHHHHHHHHH
Confidence 34589999999999988643
No 96
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.76 E-value=3.6e-18 Score=203.36 Aligned_cols=272 Identities=20% Similarity=0.270 Sum_probs=165.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc-
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS- 798 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~- 798 (1129)
..+++|||+|++|+++|+.|.+.| .+|+|+|+ +.+||+|.. .||-+ +|++....
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~GG~~~~---~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~ 76 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKLG--KKVALIEK-GPLGGTCLN---VGCIPSKALIAAAEAFHEAKHAEEFGIHADGPK 76 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHCC--CeEEEEeC-Cccccceec---cceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 357899999999999999999999 99999999 789999984 34411 11110000
Q ss_pred -ccCccccccc-------ccc----ccccCCCC--------CCC----CCCCCCChhhhhhccCCCCCCCCCCCCCCCC-
Q psy12350 799 -MYKSLKTNLP-------KDL----MELCGYGH--------KGN----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQI- 853 (1129)
Q Consensus 799 -~y~~~~~~~~-------~~~----~~~~~~~~--------~~~----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g- 853 (1129)
.+..+..... ... .......+ ... ....+.....++.+|+. .|++||.+.+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~--~p~ipg~~~~~~~ 154 (460)
T PRK06292 77 IDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR--VPPIPGVWLILGD 154 (460)
T ss_pred cCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC--CCCCCCCcccCCC
Confidence 0000000000 000 00000000 000 00011112223338888 566777653333
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
.++++.+.... ...+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+ .+
T Consensus 155 ~~~~~~~~~~~-~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~-------------~l 220 (460)
T PRK06292 155 RLLTSDDAFEL-DKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQK-------------IL 220 (460)
T ss_pred cEECchHHhCc-cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHH-------------HH
Confidence 34444433322 235799999999999999999999999999999987765542 1111111111 11
Q ss_pred CCCeEEcC--CeeEEeCC---cEEe--cCC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCC
Q psy12350 933 PNNVVLKP--DVAELTPT---GVRF--QDG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 933 ~~~V~~~~--~i~~v~~~---~V~~--~dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
..+|+++. .+.+++.+ .+++ .+| +++++|.||+|+|++|+.++|. +..|+++++++...+..+ +.++.|
T Consensus 221 ~~~I~i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~-~~ts~~ 299 (460)
T PRK06292 221 SKEFKIKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEH-TQTSVP 299 (460)
T ss_pred hhccEEEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCC-cccCCC
Confidence 11144443 36677532 3543 344 4689999999999999988654 346788776554434333 335899
Q ss_pred CcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1003 TMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1003 ~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|||++|++.... ..+.+..||+.+|..+.|.
T Consensus 300 ~IyA~GD~~~~~~~~~~A~~qg~~aa~~i~~~ 331 (460)
T PRK06292 300 GIYAAGDVNGKPPLLHEAADEGRIAAENAAGD 331 (460)
T ss_pred CEEEEEecCCCccchhHHHHHHHHHHHHhcCC
Confidence 999999997643 4589999999999999873
No 97
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.76 E-value=3.5e-18 Score=202.56 Aligned_cols=271 Identities=19% Similarity=0.269 Sum_probs=166.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~-- 798 (1129)
.+++|||+|++|+.+|..+.+.| .+|+|+|+.+.+||+|.. .||-+ +|+.....
T Consensus 5 ~DvvVIG~GpaG~~aA~~aa~~G--~~V~lie~~~~~GG~c~n---~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~ 79 (471)
T PRK06467 5 TQVVVLGAGPAGYSAAFRAADLG--LETVCVERYSTLGGVCLN---VGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKI 79 (471)
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCcccccccC---CCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 57899999999999999999999 999999998889999974 34411 01100000
Q ss_pred ccCcccc-------cccc-----------c----cccccC---CCCCCCCC--CCCCChhhhhhccCCCCC-CCCCCCCC
Q psy12350 799 MYKSLKT-------NLPK-----------D----LMELCG---YGHKGNAD--KSYIGAKDVLENYNHPIY-PEFKGKDM 850 (1129)
Q Consensus 799 ~y~~~~~-------~~~~-----------~----~~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~P~~-P~i~G~~~ 850 (1129)
-|..+.. .... . ...|.+ +....... ..+....-++++|++|.. |.+++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~~~~ 159 (471)
T PRK06467 80 DIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPHDDP 159 (471)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCCCCC
Confidence 0000000 0000 0 000000 00000000 012223334459999974 44555322
Q ss_pred CCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccc
Q psy12350 851 CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTS 929 (1129)
Q Consensus 851 f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 929 (1129)
.++.+.+...... .+|+|+|||+|.+|+|+|..+++.|.+||++++.+..++. .+.+.....+.
T Consensus 160 ---~v~~~~~~~~~~~-~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~----------- 224 (471)
T PRK06467 160 ---RIWDSTDALELKE-VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKR----------- 224 (471)
T ss_pred ---cEEChHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHH-----------
Confidence 3555554444332 3689999999999999999999999999999987765542 22222111110
Q ss_pred cCCCCCeEEcC--CeeEEe--CCc--EEecCC----cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceee
Q psy12350 930 LCLPNNVVLKP--DVAELT--PTG--VRFQDG----SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTIN 998 (1129)
Q Consensus 930 ~~~~~~V~~~~--~i~~v~--~~~--V~~~dG----~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~ 998 (1129)
+..+|.+.. .+++++ +++ +++.++ +++++|.||+|+|++|+.+++. +..|+++++++...+..+ +.
T Consensus 225 --l~~~v~i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~-~~ 301 (471)
T PRK06467 225 --IKKQFNIMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQ-CR 301 (471)
T ss_pred --HhhceEEEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCC-cc
Confidence 111133333 366664 233 344442 3589999999999999988654 446788876654333333 34
Q ss_pred cCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 999 IEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.||||++|++... ...+.+..||+.++..+.|.
T Consensus 302 t~~p~VyAiGDv~~~~~la~~A~~eG~~aa~~i~g~ 337 (471)
T PRK06467 302 TNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEVIAGK 337 (471)
T ss_pred cCCCCEEEehhhcCCcccHHHHHHHHHHHHHHHcCC
Confidence 589999999998654 35689999999999999874
No 98
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.76 E-value=6.5e-18 Score=193.27 Aligned_cols=295 Identities=13% Similarity=0.117 Sum_probs=166.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||++|+++|..|++ .+++|+++|+.+.+||.+.+.. +.+
T Consensus 17 ~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~------------------------------~~~ 64 (352)
T PRK12770 17 TGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGI------------------------------PEF 64 (352)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecC------------------------------ccc
Confidence 45799999999999999999999 6799999999999999876310 000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccc-cccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKH-LINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
..+.+.+...++.+.+. ++ .+++++.|..+... ....+.+... .... +.....|| +|||
T Consensus 65 ---------~~~~~~~~~~~~~l~~~-~i--~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~d-----~lvi 124 (352)
T PRK12770 65 ---------RIPIERVREGVKELEEA-GV--VFHTRTKVCCGEPLHEEEGDEFVER--IVSL-EELVKKYD-----AVLI 124 (352)
T ss_pred ---------ccCHHHHHHHHHHHHhC-Ce--EEecCcEEeeccccccccccccccc--cCCH-HHHHhhCC-----EEEE
Confidence 01223444455555443 55 67888877654320 0000111111 1011 11224688 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
|||. ..|..|++||... .+ ..+. .+...+.. +...+........
T Consensus 125 AtGs-~~~~~~~ipg~~~---~~---------------v~~~~~~~~~~~~----------------~~~~~~~~~~~~~ 169 (352)
T PRK12770 125 ATGT-WKSRKLGIPGEDL---PG---------------VYSALEYLFRIRA----------------AKLGYLPWEKVPP 169 (352)
T ss_pred EeCC-CCCCcCCCCCccc---cC---------------ceeHHHHHHHhhh----------------ccccccccccccc
Confidence 9993 2577788876321 11 1100 00000000 0000000011111
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccE-EEEccccCCccccc----------CCCCeEEcCCceEEcC
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATT-VFLSHHSEHVKKLR----------FPNNVVKKPDIAELTP 314 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~-V~lv~r~~~~~~~~----------~~~~i~~~~~v~~~~~ 314 (1129)
..+++++| ||+|++|+|+|..|...+.+ |++++|.+...... ..-++.....+.++++
T Consensus 170 ~~g~~vvV-----------iG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~~~l~~~gi~i~~~~~v~~i~~ 238 (352)
T PRK12770 170 VEGKKVVV-----------VGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEIERLIARGVEFLELVTPVRIIG 238 (352)
T ss_pred cCCCEEEE-----------ECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHHHHHHHcCCEEeeccCceeeec
Confidence 12344444 79999999999999888875 99999865321110 0113444556677754
Q ss_pred Cc----eEEc------------------C--CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCC
Q psy12350 315 TG----VRFQ------------------D--GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 315 ~~----v~~~------------------d--g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
++ |.+. + ++++++|.||+|+|++++..++.+..++..+.+..+....+ +..+.|+
T Consensus 239 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~ 317 (352)
T PRK12770 239 EGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-HMTSREG 317 (352)
T ss_pred CCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-cccCCCC
Confidence 32 2321 2 24679999999999999987765325555554433322222 1246799
Q ss_pred eEEeccccccc--ccccccceeeehhhcccccc
Q psy12350 371 MCIIGYTYRYP--FLHESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 371 l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~ 401 (1129)
+|.+|.....| ......||+.+|.++...+.
T Consensus 318 vyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~l~ 350 (352)
T PRK12770 318 VFAAGDVVTGPSKIGKAIKSGLRAAQSIHEWLD 350 (352)
T ss_pred EEEEcccccCcchHHHHHHHHHHHHHHHHHHHh
Confidence 99999764322 22334777777777665543
No 99
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.76 E-value=5e-18 Score=201.23 Aligned_cols=280 Identities=16% Similarity=0.212 Sum_probs=165.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||..|++ .|++|+|||+.+.+||.+.+. ++.
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~g------------------------------ip~-- 188 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYG------------------------------IPD-- 188 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeec------------------------------CCc--
Confidence 4799999999999999999999 669999999999999998740 011
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
+....++.+...+.+.++|+ .+++++.|.. +. .. ......|| +||+||
T Consensus 189 --------~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~-~~---------------~~-~~~~~~~d-----~vvlAt 236 (471)
T PRK12810 189 --------FKLEKEVIDRRIELMEAEGI--EFRTNVEVGK-DI---------------TA-EELLAEYD-----AVFLGT 236 (471)
T ss_pred --------ccCCHHHHHHHHHHHHhCCc--EEEeCCEECC-cC---------------CH-HHHHhhCC-----EEEEec
Confidence 11112345555556667776 7888877631 00 00 00113589 999999
Q ss_pred ccCCC-CCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 169 GHVTL-PSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 169 G~~~~-p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
| +. |..+++||... .| .+. ..|+..... .... .........
T Consensus 237 G--a~~~~~l~ipG~~~---~g---------------V~~~~~~l~~~~~--------------~~~~---~~~~~~~~~ 279 (471)
T PRK12810 237 G--AYKPRDLGIPGRDL---DG---------------VHFAMDFLIQNTR--------------RVLG---DETEPFISA 279 (471)
T ss_pred C--CCCCCcCCCCCccC---CC---------------cEEHHHHHHHHHh--------------hhcc---ccccccccC
Confidence 9 43 66677776321 11 111 011100000 0000 000000001
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCccccc--------------------CCCCeEE
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHVKKLR--------------------FPNNVVK 305 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~~~~~--------------------~~~~i~~ 305 (1129)
. |++|+| ||||++|+|+|..+.+.| ++|+++.+........ ..-++..
T Consensus 280 ~-------gk~VvV----IGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~ 348 (471)
T PRK12810 280 K-------GKHVVV----IGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREF 348 (471)
T ss_pred C-------CCEEEE----ECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEe
Confidence 1 344444 899999999998877766 5899776544221111 0114455
Q ss_pred cCCceEEcC-C-c---eEE-----cCC---------CEeecCEEEEcccccccCC-CCCCCCCeEeecCccccccccccc
Q psy12350 306 KPDIAELTP-T-G---VRF-----QDG---------SYEQVDIILYCTGYTYRYP-FLHESCGIKVVNKNVQPLYKHLIN 365 (1129)
Q Consensus 306 ~~~v~~~~~-~-~---v~~-----~dg---------~~~~~D~VI~atG~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~ 365 (1129)
...++++.+ + . |.+ .+| .++++|.||+|+|++++.. ++. ..++.++.+..+......+.
T Consensus 349 ~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~-~~gl~~~~~g~i~vd~~~~~ 427 (471)
T PRK12810 349 NVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLA-QFGVELDERGRVAAPDNAYQ 427 (471)
T ss_pred ccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhcc-ccCcccCCCCCEEeCCCccc
Confidence 666777753 2 2 222 222 3579999999999999854 554 45566654443332211233
Q ss_pred CCCCCeEEeccccccc-c-cccccceeeehhhcccccccc
Q psy12350 366 IEHPSMCIIGYTYRYP-F-LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 366 ~~~p~l~~~G~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
++.|++|.+|.....+ + ..+..|++.+|.++..++.+.
T Consensus 428 Ts~~gVfa~GD~~~g~~~~~~Av~~G~~AA~~i~~~L~g~ 467 (471)
T PRK12810 428 TSNPKVFAAGDMRRGQSLVVWAIAEGRQAARAIDAYLMGS 467 (471)
T ss_pred CCCCCEEEccccCCCchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 6789999999886433 2 234488888888887766554
No 100
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=99.75 E-value=2e-18 Score=203.01 Aligned_cols=264 Identities=15% Similarity=0.221 Sum_probs=166.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcc-ccccC---ccccccccccccccC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVH-SSMYK---SLKTNLPKDLMELCG 816 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~-~~~y~---~~~~~~~~~~~~~~~ 816 (1129)
.++|||+|++|+.+|.+|++.+++.+|+|+|+++.++ +. .| ++|.. ..... .+....+..+.+..+
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~--~~-----~~---~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS--FA-----NC---ALPYYIGEVVEDRKYALAYTPEKFYDRKQ 72 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc--cc-----cC---CcchhhcCccCCHHHcccCCHHHHHHhCC
Confidence 5799999999999999999887779999999988654 11 11 00000 00000 000000000000000
Q ss_pred CC---------CCCCC----------CC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-------CCCC
Q psy12350 817 YG---------HKGNA----------DK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-------EPFA 868 (1129)
Q Consensus 817 ~~---------~~~~~----------~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-------~~~~ 868 (1129)
.. +..+. .. ......-++++|+.|+.|++++. .++...++.+. ....
T Consensus 73 i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~-----~~~~~~~~~~~~~l~~~l~~~~ 147 (438)
T PRK13512 73 ITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESD-----ITFTLRNLEDTDAIDQFIKANQ 147 (438)
T ss_pred CEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCC-----CeEEecCHHHHHHHHHHHhhcC
Confidence 00 00000 00 01223345569999998876542 23333322211 1234
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEE
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v 945 (1129)
+++|+|||+|.+|+|+|..|++.|++||++++.+..++. .+.+.....+. +. ..+|+++.+ ++++
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~---------l~---~~gI~i~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDE---------LD---KREIPYRLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHH---------HH---hcCCEEEECCeEEEE
Confidence 789999999999999999999999999999987654432 11111111111 11 125666644 8888
Q ss_pred eCCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------c
Q psy12350 946 TPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------L 1014 (1129)
Q Consensus 946 ~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~ 1014 (1129)
++..|++++|+++++|.||+|+|++|+.+++.. .|+.+++++...+... +.++.||||++|++... .
T Consensus 216 ~~~~v~~~~g~~~~~D~vl~a~G~~pn~~~l~~-~gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~ 293 (438)
T PRK13512 216 NGNEVTFKSGKVEHYDMIIEGVGTHPNSKFIES-SNIKLDDKGFIPVNDK-FETNVPNIYAIGDIITSHYRHVDLPASVP 293 (438)
T ss_pred eCCEEEECCCCEEEeCEEEECcCCCcChHHHHh-cCcccCCCCcEEECCC-cccCCCCEEEeeeeEEeeeccCCCceecc
Confidence 888899999999999999999999999888765 6777766554444443 34689999999998641 2
Q ss_pred hhHHHHHHHHHHHHHHcCC
Q psy12350 1015 LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..+.+..||+.+++.+.|.
T Consensus 294 la~~A~~~a~~~a~ni~g~ 312 (438)
T PRK13512 294 LAWGAHRAASIVAEQIAGN 312 (438)
T ss_pred cchHHHHHHHHHHHHhcCC
Confidence 3356888999999999874
No 101
>PTZ00058 glutathione reductase; Provisional
Probab=99.75 E-value=4.9e-18 Score=202.00 Aligned_cols=180 Identities=21% Similarity=0.300 Sum_probs=124.2
Q ss_pred hhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhh
Q psy12350 834 LENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIA 912 (1129)
Q Consensus 834 ~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~ 912 (1129)
+++|+.|+.|++||.+ .++++.++.+... +|+|+|||+|.+|+|+|..+++.|++||++++++..++. .+.+.
T Consensus 208 IATGS~P~~P~IpG~~----~v~ts~~~~~l~~--pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il~~~d~~i~ 281 (561)
T PTZ00058 208 IAVGNKPIFPDVKGKE----FTISSDDFFKIKE--AKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLLRKFDETII 281 (561)
T ss_pred EecCCCCCCCCCCCce----eEEEHHHHhhccC--CCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccccccCCHHHH
Confidence 3399999999999974 2566666654433 799999999999999999999999999999987655432 22222
Q ss_pred ccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC---c--EEecCC-cEeeccEEEEccCccCcCCCCCC-CCCee
Q psy12350 913 TRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT---G--VRFQDG-SYEQVDIILCCTGYSNHYPFLHE-SCGIK 983 (1129)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~---~--V~~~dG-~~~~~D~VI~aTG~~~~~~fl~~-~~g~~ 983 (1129)
....+.+. ..+|++..+ +.+++++ + +.+.++ +++++|.||+|+|++|+..+|.. ..++.
T Consensus 282 ~~l~~~L~------------~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~ 349 (561)
T PTZ00058 282 NELENDMK------------KNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIK 349 (561)
T ss_pred HHHHHHHH------------HCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccccCcccccee
Confidence 21111110 125665544 6777542 2 334444 46899999999999999887753 23443
Q ss_pred ecCCcccccccceeecCCCCcEEEccccc----------------------------------c-chhHHHHHHHHHHHH
Q psy12350 984 VVNKNVQPLYKHTINIEHPTMFILGVPRH----------------------------------T-LLFNLFDLQVRLFQQ 1028 (1129)
Q Consensus 984 ~~~~~~~~ly~~~~~~~~p~l~~iG~~~~----------------------------------~-~~~~~~e~qa~~~a~ 1028 (1129)
.+ ++...+..+ +.++.||||++|++.. . ...+.+..||+.+|.
T Consensus 350 ~~-~G~I~VDe~-lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~aa~ 427 (561)
T PTZ00058 350 TP-KGYIKVDDN-QRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLLAD 427 (561)
T ss_pred cC-CCeEEECcC-CccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHHHH
Confidence 33 332233222 3468999999999976 2 345899999999999
Q ss_pred HHcCC
Q psy12350 1029 LMQGH 1033 (1129)
Q Consensus 1029 ~l~g~ 1033 (1129)
.+.|.
T Consensus 428 ni~g~ 432 (561)
T PTZ00058 428 RLFGP 432 (561)
T ss_pred HHhCC
Confidence 99874
No 102
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=99.74 E-value=1.1e-17 Score=198.18 Aligned_cols=267 Identities=19% Similarity=0.216 Sum_probs=172.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccC-------------cccc--
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYK-------------SLKT-- 805 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~-------------~~~~-- 805 (1129)
+++|||+|++|+.+|..+.+.| .+|+++|++ .+||+|.. .||- |.+..+.. ....
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~g--~~v~~~e~~-~~gG~c~~---~gci----PsK~l~~~a~~~~~~~~~~~~g~~~~~ 72 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQLG--ADVTVIERD-GLGGAAVL---TDCV----PSKTLIATAEVRTELRRAAELGIRFID 72 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCCcccc---cCCc----chHHHHHHHHHHHHHHHHHhCCccccc
Confidence 5789999999999999999999 999999986 59999984 3552 21110000 0000
Q ss_pred ------ccc------------------cccc-----------cc----cC-C--CCCCCCCC--CCCChhhhhhccCCCC
Q psy12350 806 ------NLP------------------KDLM-----------EL----CG-Y--GHKGNADK--SYIGAKDVLENYNHPI 841 (1129)
Q Consensus 806 ------~~~------------------~~~~-----------~~----~~-~--~~~~~~~~--~~~~~~~v~~~~~~P~ 841 (1129)
+.. ..+. .+ .+ . ........ .+....-|+++|+.|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~ 152 (466)
T PRK07845 73 DGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR 152 (466)
T ss_pred CcccccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC
Confidence 000 0000 00 00 0 00000000 1223334455999998
Q ss_pred CCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEE
Q psy12350 842 YPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFL 920 (1129)
Q Consensus 842 ~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~ 920 (1129)
.|++++.+. ..++++.+..+... .+++|+|||+|.+|+|+|..|++.+++||++++.+..++. .+.......+.
T Consensus 153 ~~p~~~~~~--~~v~~~~~~~~~~~-~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~-- 227 (466)
T PRK07845 153 ILPTAEPDG--ERILTWRQLYDLDE-LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEV-- 227 (466)
T ss_pred CCCCCCCCC--ceEEeehhhhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHH--
Confidence 877655432 24666665544333 3689999999999999999999999999999987655432 22211111111
Q ss_pred ecCCccccccCCCCCeEEcCC--eeEEe--CCc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccc
Q psy12350 921 SHHSERVTSLCLPNNVVLKPD--VAELT--PTG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 921 ~~~~~~~~~~~~~~~V~~~~~--i~~v~--~~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly 993 (1129)
+. ..+|++..+ +.+++ +++ +.+.+|+++++|.||+|+|++|+...+. +..|+++++++...+.
T Consensus 228 -------L~---~~gV~i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd 297 (466)
T PRK07845 228 -------FA---RRGMTVLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVD 297 (466)
T ss_pred -------HH---HCCcEEEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeEC
Confidence 11 125666654 77774 333 5667899999999999999999987643 3477888765544444
Q ss_pred cceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 994 KHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.+ ..++.||||++|++... ...+.+..||+.++..+.|.
T Consensus 298 ~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 337 (466)
T PRK07845 298 RV-SRTSVPGIYAAGDCTGVLPLASVAAMQGRIAMYHALGE 337 (466)
T ss_pred CC-cccCCCCEEEEeeccCCccchhHHHHHHHHHHHHHcCC
Confidence 33 34589999999998765 45689999999999998874
No 103
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.74 E-value=7.5e-18 Score=200.32 Aligned_cols=267 Identities=16% Similarity=0.246 Sum_probs=168.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc-----cCcccc-----ccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM-----YKSLKT-----NLP- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~-----y~~~~~-----~~~- 808 (1129)
.+++|||+|++|+++|..+.+.| .+|+|+|+ +.+||+|... ||- |.+..+ +..+.. ...
T Consensus 5 ~DvvIIG~GpaG~~AA~~aa~~G--~~V~lie~-~~~GG~c~~~---gci----Psk~l~~~~~~~~~~~~~~~~~gi~~ 74 (466)
T PRK07818 5 YDVVVLGAGPGGYVAAIRAAQLG--LKTAVVEK-KYWGGVCLNV---GCI----PSKALLRNAELAHIFTKEAKTFGISG 74 (466)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceecC---Ccc----ccHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 48899999999999999999999 99999998 4799999843 442 211100 000000 000
Q ss_pred c------------------------ccccccCCC--------CCCC-------CC--CCCCChhhhhhccCCCCCCCCCC
Q psy12350 809 K------------------------DLMELCGYG--------HKGN-------AD--KSYIGAKDVLENYNHPIYPEFKG 847 (1129)
Q Consensus 809 ~------------------------~~~~~~~~~--------~~~~-------~~--~~~~~~~~v~~~~~~P~~P~i~G 847 (1129)
. ...+..... .... .. ..+....-++++|+.|+.| ||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--pg 152 (466)
T PRK07818 75 EVTFDYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PG 152 (466)
T ss_pred CcccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--CC
Confidence 0 000000000 0000 00 0112223344499999875 66
Q ss_pred CCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCcc
Q psy12350 848 KDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSER 926 (1129)
Q Consensus 848 ~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 926 (1129)
.+ +.+.++++.+.... ...+++|+|||+|.+|+|+|..|++.|.+|+++++.+..++.. +.......+.
T Consensus 153 ~~-~~~~v~~~~~~~~~-~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~-------- 222 (466)
T PRK07818 153 TS-LSENVVTYEEQILS-RELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQ-------- 222 (466)
T ss_pred CC-CCCcEEchHHHhcc-ccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHH--------
Confidence 53 22345554432221 2347899999999999999999999999999999876554432 1121111111
Q ss_pred ccccCCCCCeEEcCC--eeEEeCCc----EEec--CCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccc
Q psy12350 927 VTSLCLPNNVVLKPD--VAELTPTG----VRFQ--DGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKH 995 (1129)
Q Consensus 927 ~~~~~~~~~V~~~~~--i~~v~~~~----V~~~--dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~ 995 (1129)
+. ..+|++..+ |+++++++ +.+. ||+ ++++|.||+|+|++|+.+++. +..|+.+++++...+..+
T Consensus 223 -l~---~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~ 298 (466)
T PRK07818 223 -YK---KLGVKILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDY 298 (466)
T ss_pred -HH---HCCCEEEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCC
Confidence 11 125666654 77776432 4443 674 689999999999999987653 346777766554444333
Q ss_pred eeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 996 TINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 996 ~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 299 -~~Ts~p~IyAiGD~~~~~~l~~~A~~~g~~aa~~i~g~ 336 (466)
T PRK07818 299 -MRTNVPHIYAIGDVTAKLQLAHVAEAQGVVAAETIAGA 336 (466)
T ss_pred -cccCCCCEEEEeecCCCcccHhHHHHHHHHHHHHHcCC
Confidence 34589999999998754 45689999999999999875
No 104
>PRK12831 putative oxidoreductase; Provisional
Probab=99.74 E-value=1.3e-17 Score=196.47 Aligned_cols=263 Identities=17% Similarity=0.200 Sum_probs=156.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCc-cccccccccccc---
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKS-LKTNLPKDLMEL--- 814 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~-~~~~~~~~~~~~--- 814 (1129)
.-+++|||+|++|+++|..|.+.| ++|+|||+.+.+||++.+. +|... +-.. +.......+..+
T Consensus 140 ~~~V~IIG~GpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~g---------ip~~~-l~~~~~~~~~~~~~~~~gv~ 207 (464)
T PRK12831 140 GKKVAVIGSGPAGLTCAGDLAKMG--YDVTIFEALHEPGGVLVYG---------IPEFR-LPKETVVKKEIENIKKLGVK 207 (464)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCCCeeeec---------CCCcc-CCccHHHHHHHHHHHHcCCE
Confidence 346899999999999999999999 9999999999999998742 22100 0000 000000000000
Q ss_pred --cCCCCCCC----C-CCCCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC-------------CCCCCCCeEE
Q psy12350 815 --CGYGHKGN----A-DKSYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT-------------PEPFAGKQAV 873 (1129)
Q Consensus 815 --~~~~~~~~----~-~~~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~-------------~~~~~gk~Vv 873 (1129)
.+...... . ...+.....++.+|+ .|+.|++||.+. . .++++.++.. .....||+|+
T Consensus 208 i~~~~~v~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~Vv 285 (464)
T PRK12831 208 IETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENL-N-GVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVA 285 (464)
T ss_pred EEcCCEECCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCC-c-CcEEHHHHHHHHHhcccccccccCcccCCCeEE
Confidence 00000000 0 001112334455887 799999999763 2 2444433321 1234689999
Q ss_pred EEcCCccHHHHHHHHHhcCCEEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C
Q psy12350 874 VVGSGQSGLDITLDIATTGKQAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T 948 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~ 948 (1129)
|||+|++|+|+|..+++.|++|+++.+... .++........+. ..+|++... +.++.. +
T Consensus 286 VIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~----------------~eGV~i~~~~~~~~i~~~~~ 349 (464)
T PRK12831 286 VVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAK----------------EEGVIFDLLTNPVEILGDEN 349 (464)
T ss_pred EECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHH----------------HcCCEEEecccceEEEecCC
Confidence 999999999999999999999999976432 1111000000000 112322211 222211 1
Q ss_pred c----EEe------------------cCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCc
Q psy12350 949 G----VRF------------------QDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTM 1004 (1129)
Q Consensus 949 ~----V~~------------------~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l 1004 (1129)
+ |++ .+|+ ++++|.||+|+|+.++..++....|+.+++.+...+......++.|+|
T Consensus 350 g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgV 429 (464)
T PRK12831 350 GWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGV 429 (464)
T ss_pred CeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCE
Confidence 1 111 1333 589999999999999987776546777766554444444456789999
Q ss_pred EEEcccccc-chhHHHHHHHHHHHHHHc
Q psy12350 1005 FILGVPRHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1005 ~~iG~~~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
|++|++..+ .....+..|++.+|..+.
T Consensus 430 fAaGD~~~g~~~v~~Ai~~G~~AA~~I~ 457 (464)
T PRK12831 430 FAGGDAVTGAATVILAMGAGKKAAKAID 457 (464)
T ss_pred EEeCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 999998764 345677777777776653
No 105
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.73 E-value=6.6e-18 Score=201.38 Aligned_cols=267 Identities=16% Similarity=0.231 Sum_probs=166.2
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc-----ccCccc-----------
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS-----MYKSLK----------- 804 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~-----~y~~~~----------- 804 (1129)
+++|||+|++|+.+|.+|.+.| .+|+|+|+ +.+||+|.. .||- |.+.. .+..+.
T Consensus 3 DvvVIG~G~aGl~aA~~la~~G--~~v~lie~-~~~GG~~~~---~gc~----Psk~l~~~~~~~~~~~~~~~~g~~~~~ 72 (461)
T TIGR01350 3 DVVVIGGGPGGYVAAIRAAQLG--LKVALVEK-EYLGGTCLN---VGCI----PTKALLHSAEVYDEIKHAKDYGIEVEN 72 (461)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEec-CCCCCceee---cCcc----chHHHHHHhhHHHHHHHHHhcCCCCCC
Confidence 6899999999999999999999 99999999 889999973 3442 21110 000000
Q ss_pred --ccccc-------------------------cc----ccccC---CCCCCCCC-CCCCChhhhhhccCCCCCCCCC-CC
Q psy12350 805 --TNLPK-------------------------DL----MELCG---YGHKGNAD-KSYIGAKDVLENYNHPIYPEFK-GK 848 (1129)
Q Consensus 805 --~~~~~-------------------------~~----~~~~~---~~~~~~~~-~~~~~~~~v~~~~~~P~~P~i~-G~ 848 (1129)
.+... +. ..+.+ +....... ..+.....++++|+.|+.|++| +.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~ 152 (461)
T TIGR01350 73 VSVDWEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDF 152 (461)
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCC
Confidence 00000 00 00000 00000000 0122223344499999998887 33
Q ss_pred CCCCCc-EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCcc
Q psy12350 849 DMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSER 926 (1129)
Q Consensus 849 ~~f~g~-~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 926 (1129)
.+. ++++.+.... ...+|+|+|||+|.+|+|+|..|++.+.+|+++++.+..++.. +.+.....+
T Consensus 153 ---~~~~~~~~~~~~~~-~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~--------- 219 (461)
T TIGR01350 153 ---DGEVVITSTGALNL-KEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAK--------- 219 (461)
T ss_pred ---CCceEEcchHHhcc-ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHH---------
Confidence 233 3333333222 2247899999999999999999999999999999876554321 111111111
Q ss_pred ccccCCCCCeEEcCC--eeEEe--CCcE--EecCC--cEeeccEEEEccCccCcCCCC-CCCCCeeecCCccccccccee
Q psy12350 927 VTSLCLPNNVVLKPD--VAELT--PTGV--RFQDG--SYEQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLYKHTI 997 (1129)
Q Consensus 927 ~~~~~~~~~V~~~~~--i~~v~--~~~V--~~~dG--~~~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly~~~~ 997 (1129)
.+. ..+|++..+ +.+++ ++++ .+.+| +++++|.||+|+|++|+.+.+ -+..++.++.++...+... +
T Consensus 220 ~l~---~~gi~i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~-l 295 (461)
T TIGR01350 220 ALK---KKGVKILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEY-M 295 (461)
T ss_pred HHH---HcCCEEEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCC-c
Confidence 111 124665543 77665 3344 44567 478999999999999998732 2336777776554334332 3
Q ss_pred ecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 998 NIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 998 ~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.++.|+||++|++... ...+.+..||+.+|..+.+..
T Consensus 296 ~t~~~~IyaiGD~~~~~~~~~~A~~~g~~aa~~i~~~~ 333 (461)
T TIGR01350 296 RTNVPGIYAIGDVIGGPMLAHVASHEGIVAAENIAGKE 333 (461)
T ss_pred ccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 4578999999998754 356889999999999998753
No 106
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=99.73 E-value=5.2e-18 Score=201.34 Aligned_cols=275 Identities=15% Similarity=0.169 Sum_probs=165.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCC-Ccccccc----Cccc---ccc--ccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGL-PVHSSMY----KSLK---TNL--PKD 810 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~-p~~~~~y----~~~~---~~~--~~~ 810 (1129)
.++|||+|++|+++|..|++.++..+|+|||+++..+- .....+.... +. +...... +.+. .+. ...
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 78 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF--GACGLPYFVG-GFFDDPNTMIARTPEEFIKSGIDVKTEHE 78 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee--ecCCCceEec-cccCCHHHhhcCCHHHHHHCCCeEEecCE
Confidence 46899999999999999999886689999999987541 1000000000 00 0000000 0000 000 000
Q ss_pred cccc--cC--CCCCC-CCCCCCC--ChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCCCCeEEEEc
Q psy12350 811 LMEL--CG--YGHKG-NADKSYI--GAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFAGKQAVVVG 876 (1129)
Q Consensus 811 ~~~~--~~--~~~~~-~~~~~~~--~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~gk~VvVVG 876 (1129)
.... .. +.... .....+. ...-++.+|+.|+.|++||++. ..+++...+.+.. +..+++|+|||
T Consensus 79 V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~--~~v~~~~~~~~~~~l~~~l~~~~~~~vvVvG 156 (444)
T PRK09564 79 VVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINL--ENVYTLKSMEDGLALKELLKDEEIKNIVIIG 156 (444)
T ss_pred EEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCEEEEEC
Confidence 0000 00 00000 0001111 2334556999999999999863 2455555443221 23579999999
Q ss_pred CCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc---
Q psy12350 877 SGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG--- 949 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~--- 949 (1129)
+|.+|+|+|..+.+.+++|+++.+.+..++ +.+.+.....+.+. ..+|++..+ +.++++++
T Consensus 157 gG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~------------~~gI~v~~~~~v~~i~~~~~~~ 224 (444)
T PRK09564 157 AGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELR------------ENGVELHLNEFVKSLIGEDKVE 224 (444)
T ss_pred CCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHH------------HCCCEEEcCCEEEEEecCCcEE
Confidence 999999999999999999999987664432 22222221111110 114555543 77776443
Q ss_pred EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHH
Q psy12350 950 VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNL 1018 (1129)
Q Consensus 950 V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~ 1018 (1129)
....++.++++|.||+|+|++++.+++.. .|+++++++...+..++ .++.||||++|++... ...+.
T Consensus 225 ~v~~~~~~i~~d~vi~a~G~~p~~~~l~~-~gl~~~~~g~i~vd~~~-~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~ 302 (444)
T PRK09564 225 GVVTDKGEYEADVVIVATGVKPNTEFLED-TGLKTLKNGAIIVDEYG-ETSIENIYAAGDCATIYNIVSNKNVYVPLATT 302 (444)
T ss_pred EEEeCCCEEEcCEEEECcCCCcCHHHHHh-cCccccCCCCEEECCCc-ccCCCCEEEeeeEEEEEeccCCCeeeccchHH
Confidence 22345557999999999999999888765 67776554433333333 3589999999998642 24578
Q ss_pred HHHHHHHHHHHHcCCC
Q psy12350 1019 FDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1019 ~e~qa~~~a~~l~g~~ 1034 (1129)
+..||+.+|+++.|..
T Consensus 303 A~~qg~~~a~ni~g~~ 318 (444)
T PRK09564 303 ANKLGRMVGENLAGRH 318 (444)
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999998753
No 107
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.73 E-value=2.7e-17 Score=194.92 Aligned_cols=270 Identities=19% Similarity=0.234 Sum_probs=167.9
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcc----c
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVH----S 797 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~----~ 797 (1129)
.++|||+|++|+++|..+.+.| .+|+|+||+ .+||+|.. .||-+ +|++.. .
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g--~~V~lie~~-~~GG~c~n---~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 75 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNG--KNVTLIDEA-DLGGTCLN---EGCMPTKSLLESAEVHDKVKKANHFGITLPNGSIS 75 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CcEEEEECC-cccccCCC---CccccchHHHHHHHHHHHHHHHHhcCccccCCCCc
Confidence 5689999999999999999999 999999986 59999984 35521 111100 0
Q ss_pred cccCcccccccc----------ccccccCCCC-------CCC--------CC-CCCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 798 SMYKSLKTNLPK----------DLMELCGYGH-------KGN--------AD-KSYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 798 ~~y~~~~~~~~~----------~~~~~~~~~~-------~~~--------~~-~~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
.-|..+...... ....-....+ ... .. ..+....-++++|+.|+.|+++|.+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~- 154 (458)
T PRK06912 76 IDWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDG- 154 (458)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCC-
Confidence 000000000000 0000000000 000 00 01112223344999999888887643
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
..++++.+...... .+++|+|||+|.+|+|+|..+++.+.+|+++++.+..++. .+.+.....+ .+.
T Consensus 155 -~~v~~~~~~~~~~~-~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~---------~L~- 222 (458)
T PRK06912 155 -KWIINSKHAMSLPS-IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILRE---------KLE- 222 (458)
T ss_pred -CeEEcchHHhCccc-cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHH---------HHH-
Confidence 23556554443333 3689999999999999999999999999999987655432 1111111111 111
Q ss_pred CCCCCeEEcCC--eeEEeCCc--EEec-CCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCC
Q psy12350 931 CLPNNVVLKPD--VAELTPTG--VRFQ-DGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~~~--V~~~-dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
..+|+++.+ |.+++.++ +.+. +|+ ++++|.||+|||++|+.+++. +..|+.+++++ ..+..+ +.++.|
T Consensus 223 --~~GI~i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~~-~~ts~~ 298 (458)
T PRK06912 223 --NDGVKIFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNEH-MQTNVP 298 (458)
T ss_pred --HCCCEEEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCCC-eecCCC
Confidence 125666554 77776433 4443 443 589999999999999987664 34577776655 334333 345899
Q ss_pred CcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1003 TMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1003 ~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|||++|++... ...+.+..|++.++..+.|.
T Consensus 299 ~VyA~GD~~~~~~la~~A~~~g~~aa~~~~g~ 330 (458)
T PRK06912 299 HIYACGDVIGGIQLAHVAFHEGTTAALHASGE 330 (458)
T ss_pred CEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 99999998764 45688999999999999875
No 108
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=99.73 E-value=9.1e-18 Score=197.94 Aligned_cols=181 Identities=17% Similarity=0.210 Sum_probs=125.8
Q ss_pred ccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhcc
Q psy12350 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATR 914 (1129)
Q Consensus 836 ~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~ 914 (1129)
+|+.|..|++.+.+. -.++.+.+.....+ .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+...
T Consensus 139 TGs~p~~p~~~~~~~--~~~~~~~~~~~l~~-~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~ 215 (452)
T TIGR03452 139 AGSRPYIPPAIADSG--VRYHTNEDIMRLPE-LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDR 215 (452)
T ss_pred ECCCCCCCCCCCCCC--CEEEcHHHHHhhhh-cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHH
Confidence 999999887544221 12333333322222 3799999999999999999999999999999987654432 2222211
Q ss_pred ccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCC
Q psy12350 915 ASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNK 987 (1129)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~ 987 (1129)
..+ .+..+|+++.+ +.+++. ++ +.+.+|+++++|.||+|+|++|+..++. +..|++++++
T Consensus 216 l~~-------------~~~~gI~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~ 282 (452)
T TIGR03452 216 FTE-------------IAKKKWDIRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDED 282 (452)
T ss_pred HHH-------------HHhcCCEEEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCC
Confidence 111 01124555543 777753 33 5567888899999999999999988875 3468888766
Q ss_pred cccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+...+..+ +.++.||||++|++... ...+.+..||+.+|+++.|.
T Consensus 283 G~i~vd~~-~~Ts~~~IyA~GD~~~~~~l~~~A~~~g~~~a~ni~~~ 328 (452)
T TIGR03452 283 GRIKVDEY-GRTSARGVWALGDVSSPYQLKHVANAEARVVKHNLLHP 328 (452)
T ss_pred CcEeeCCC-cccCCCCEEEeecccCcccChhHHHHHHHHHHHHhcCC
Confidence 54444444 34789999999999865 34588999999999999864
No 109
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=99.73 E-value=2.4e-17 Score=197.80 Aligned_cols=258 Identities=16% Similarity=0.145 Sum_probs=161.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCccccccccccccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKTNLPKDLMEL- 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~- 814 (1129)
.+++|||+|++|+++|.+|.+.| ++++|+++ .+||+|.... +++ ++. .....+..........+
T Consensus 212 ~dvvIIGgGpaGl~aA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~~~~-----~~~--~~~~~l~~~l~~~~~~~g 280 (517)
T PRK15317 212 YDVLVVGGGPAGAAAAIYAARKG--IRTGIVAE--RFGGQVLDTMGIENFIS-----VPE--TEGPKLAAALEEHVKEYD 280 (517)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCeeeccCcccccCC-----CCC--CCHHHHHHHHHHHHHHCC
Confidence 47899999999999999999999 99999986 4999986321 111 000 00000000000000000
Q ss_pred ---------cCCCCC-------CCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCC
Q psy12350 815 ---------CGYGHK-------GNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSG 878 (1129)
Q Consensus 815 ---------~~~~~~-------~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G 878 (1129)
...... ......+.....++++|+.|+.|++||.++|.+..+|.+...+...++||+|+|||+|
T Consensus 281 v~i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~~~~gk~VvVVGgG 360 (517)
T PRK15317 281 VDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGG 360 (517)
T ss_pred CEEEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCchhcCCCEEEEECCC
Confidence 000000 0001122233344559999999999998888888888776666556789999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEE
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVR 951 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~ 951 (1129)
++|+|+|..|+..+++|+++.+.+..... .. +.. .+.. ..+|+++.+ +.++.++ +++
T Consensus 361 ~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~-~~---------l~~----~l~~--~~gI~i~~~~~v~~i~~~~g~v~~v~ 424 (517)
T PRK15317 361 NSGVEAAIDLAGIVKHVTVLEFAPELKAD-QV---------LQD----KLRS--LPNVTIITNAQTTEVTGDGDKVTGLT 424 (517)
T ss_pred HHHHHHHHHHHhcCCEEEEEEECcccccc-HH---------HHH----HHhc--CCCcEEEECcEEEEEEcCCCcEEEEE
Confidence 99999999999999999999875432110 00 000 0100 126666654 7777655 255
Q ss_pred ec---CCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHH
Q psy12350 952 FQ---DGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVR 1024 (1129)
Q Consensus 952 ~~---dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~ 1024 (1129)
+. +|+ ++++|.|++|+|++|+.+++... +.++.++....... ..++.||||++|++.... ....+..++.
T Consensus 425 ~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l~~~--v~~~~~g~i~vd~~-l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~ 501 (517)
T PRK15317 425 YKDRTTGEEHHLELEGVFVQIGLVPNTEWLKGT--VELNRRGEIIVDAR-GATSVPGVFAAGDCTTVPYKQIIIAMGEGA 501 (517)
T ss_pred EEECCCCcEEEEEcCEEEEeECCccCchHHhhh--eeeCCCCcEEECcC-CCCCCCCEEECccccCCCCCEEEEhhhhHH
Confidence 54 343 47999999999999998888653 56655443333333 346899999999987542 2344444444
Q ss_pred HHH
Q psy12350 1025 LFQ 1027 (1129)
Q Consensus 1025 ~~a 1027 (1129)
.+|
T Consensus 502 ~Aa 504 (517)
T PRK15317 502 KAA 504 (517)
T ss_pred HHH
Confidence 444
No 110
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.72 E-value=2.7e-17 Score=202.64 Aligned_cols=283 Identities=15% Similarity=0.185 Sum_probs=163.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||++.|. ++.|
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~g------------------------------ip~~ 373 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFG------------------------------IPAF 373 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeec------------------------------CCCc
Confidence 35799999999999999999999 679999999999999998851 0111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
....++.++..+.++++|+ .++++++|..- +++.+ ....|| +|++|
T Consensus 374 ----------~l~~~~~~~~~~~~~~~Gv--~~~~~~~v~~~-----------i~~~~------~~~~~D-----avilA 419 (654)
T PRK12769 374 ----------KLDKSLLARRREIFSAMGI--EFELNCEVGKD-----------ISLES------LLEDYD-----AVFVG 419 (654)
T ss_pred ----------cCCHHHHHHHHHHHHHCCe--EEECCCEeCCc-----------CCHHH------HHhcCC-----EEEEe
Confidence 1112445555566677776 78888876310 00100 112489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||.+. +..+.+||.. ..| .+.. .|+.... .............+...
T Consensus 420 tGa~~-~~~l~i~g~~---~~G---------------v~~a~~~l~~~~--------------~~~~~~~~~~~~~~~~~ 466 (654)
T PRK12769 420 VGTYR-SMKAGLPNED---APG---------------VYDALPFLIANT--------------KQVMGLEELPEEPFINT 466 (654)
T ss_pred CCCCC-CCCCCCCCCC---CCC---------------eEEhHHHHHHHH--------------hhhccCccccccccccC
Confidence 99532 3345555521 111 1110 0100000 00000000000000011
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCc-cccc---------CCCCeEEcCCceEEc--
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHV-KKLR---------FPNNVVKKPDIAELT-- 313 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~-~~~~---------~~~~i~~~~~v~~~~-- 313 (1129)
. |++|+| ||||++|+|+|..+.+.| ++|++++|++.. ++.. ..-++.....+.++.
T Consensus 467 ~-------gk~VvV----IGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~~~ 535 (654)
T PRK12769 467 A-------GLNVVV----LGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAREEGANFEFNVQPVALELN 535 (654)
T ss_pred C-------CCeEEE----ECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHHHcCCeEEeccCcEEEEEC
Confidence 2 344444 899999999999877776 589999987543 1110 011344556666664
Q ss_pred CCc----eEEc---------CC---------C--EeecCEEEEcccccccC-CCCCCCCCeEeecCccccccc---cccc
Q psy12350 314 PTG----VRFQ---------DG---------S--YEQVDIILYCTGYTYRY-PFLHESCGIKVVNKNVQPLYK---HLIN 365 (1129)
Q Consensus 314 ~~~----v~~~---------dg---------~--~~~~D~VI~atG~~~~~-~~l~~~~~~~~~~~~~~~l~~---~~~~ 365 (1129)
+++ |.+. +| + ++++|.||+|+|++++. .++. ..++.++.+..+.... ..+-
T Consensus 536 ~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~-~~gl~~~~~G~i~vd~~~~~~~~ 614 (654)
T PRK12769 536 EQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLE-SHGVTVDKWGRIIADVESQYRYQ 614 (654)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCcccccc-ccCCcCCCCCCEEeCCCcccCcc
Confidence 221 3331 22 2 47999999999999984 4555 4556665544322211 1234
Q ss_pred CCCCCeEEecccccccc--cccccceeeehhhcccccc
Q psy12350 366 IEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 366 ~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~ 401 (1129)
++.|++|.+|.....+- ..+..+|+.+|+.+..++.
T Consensus 615 Ts~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~~~L~ 652 (654)
T PRK12769 615 TSNPKIFAGGDAVRGADLVVTAMAEGRHAAQGIIDWLG 652 (654)
T ss_pred cCCCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHHHHhC
Confidence 67899999998864432 2344788888887766544
No 111
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.72 E-value=1.2e-20 Score=211.45 Aligned_cols=148 Identities=19% Similarity=0.200 Sum_probs=90.3
Q ss_pred ccccccCCCCCcCcCCCChHHHHHHHH----hcccceecCCCCCcceecccCCC-----C--------CcceEEEEEEcc
Q psy12350 434 YKHLINIDHPSMCIIGIPGDTVVFYMF----DLQDKIRPGRGNPRPSACEADAL-----P--------TNLTRLTYIISS 496 (1129)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~e~~~y~~----~~~~~i~~~~~~~~v~~~~~~~~-----~--------~~~~~~~~v~at 496 (1129)
+.+.+..+|++...++|+|.||.+||+ ++...++|+.+|++|+.....+. . ....+++||+||
T Consensus 76 ~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~ 155 (341)
T PF13434_consen 76 HEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLAT 155 (341)
T ss_dssp HHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE--
T ss_pred HHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECc
Confidence 345566777878889999999999999 55545999877777776543210 0 122346799999
Q ss_pred cCCCCCCCCCCCCCCCcCCcEEecCCCCCCC--CCCCCeEEEEccCcchhhhHHHhhccc--CeEEEEEEecceeeeccc
Q psy12350 497 RNYSNPVYPDFKGKDVCQIPIMHSHEYRTPE--PFAGKRAVVVGSGPSGLDITHDISTEA--TTVSAYLRFDNKTITKRK 572 (1129)
Q Consensus 497 G~~~~p~~p~~~g~~~f~g~v~hs~~~~~~~--~~~~k~v~ViG~g~sa~~~~~~l~~~~--~~v~~~~r~~~~~~~~~~ 572 (1129)
| ..|++|++........+++||++|.... ..++|+|+||||||||+|++.+|++.. .+|+|++|++.+.
T Consensus 156 G--~~P~iP~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~----- 228 (341)
T PF13434_consen 156 G--GQPRIPEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF----- 228 (341)
T ss_dssp ----EE---GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E-----
T ss_pred C--CCCCCCcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC-----
Confidence 9 8999998532211236899999996553 577899999999999999999999875 5899999998773
Q ss_pred cccCCCCCCCCCCccc
Q psy12350 573 KFDKGRNYNHPIYPEF 588 (1129)
Q Consensus 573 ~~~~~~~~~~p~~p~~ 588 (1129)
+.+.+++.++.|.|++
T Consensus 229 ~~d~s~f~ne~f~P~~ 244 (341)
T PF13434_consen 229 PMDDSPFVNEIFSPEY 244 (341)
T ss_dssp B----CCHHGGGSHHH
T ss_pred CCccccchhhhcCchh
Confidence 3334444444444443
No 112
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=4.8e-17 Score=177.79 Aligned_cols=250 Identities=17% Similarity=0.188 Sum_probs=165.3
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcc-eEEEcccCCcCccccc----CCCCCCCCCCCCccccccCcccccc-----
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFT-CTTFEQADNIGGTWLY----TEHIGCDQYGLPVHSSMYKSLKTNL----- 807 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~-v~v~E~~~~~GG~w~~----~~~~g~~~~g~p~~~~~y~~~~~~~----- 807 (1129)
...+++|||+||+||+||.++.+.+ .+ ++|+|+ ...||.-.. ..|||... +++-.. +.+.+..+.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~--l~~~li~~~-~~~gg~~~~~~~venypg~~~-~~~g~~-L~~~~~~~a~~~~~ 76 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAG--LKVVLILEG-GEPGGQLTKTTDVENYPGFPG-GILGPE-LMEQMKEQAEKFGV 76 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcC--CCcEEEEec-CCcCCccccceeecCCCCCcc-CCchHH-HHHHHHHHHhhcCe
Confidence 3457899999999999999999999 88 666665 567764332 23455322 111000 000000000
Q ss_pred ------cccccccc-CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCcc
Q psy12350 808 ------PKDLMELC-GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQS 880 (1129)
Q Consensus 808 ------~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~S 880 (1129)
......-. .|....+ ...|..+..++++|..++.|.+||.++|.|+-+|.+..++. .+++|+|+|||||+|
T Consensus 77 ~~~~~~v~~v~~~~~~F~v~t~-~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~~k~v~ViGgG~s 154 (305)
T COG0492 77 EIVEDEVEKVELEGGPFKVKTD-KGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFKGKDVVVIGGGDS 154 (305)
T ss_pred EEEEEEEEEEeecCceEEEEEC-CCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-cccCCeEEEEcCCHH
Confidence 00000001 1222222 22256666777799999999999877899999999999988 899999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC---CcEEecCC
Q psy12350 881 GLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP---TGVRFQDG 955 (1129)
Q Consensus 881 g~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~---~~V~~~dG 955 (1129)
|+|-|..|++.+++||++.|....... +.+.+. +.. ..+|.++.+ |.++.+ .+|.+.+.
T Consensus 155 Ave~Al~L~~~a~~Vtlv~r~~~~ra~-~~~~~~-------------l~~--~~~i~~~~~~~i~ei~G~~v~~v~l~~~ 218 (305)
T COG0492 155 AVEEALYLSKIAKKVTLVHRRDEFRAE-EILVER-------------LKK--NVKIEVLTNTVVKEILGDDVEGVVLKNV 218 (305)
T ss_pred HHHHHHHHHHhcCeEEEEecCcccCcC-HHHHHH-------------HHh--cCCeEEEeCCceeEEecCccceEEEEec
Confidence 999999999999999999886532220 000000 000 114555544 888877 46788764
Q ss_pred --c--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc
Q psy12350 956 --S--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013 (1129)
Q Consensus 956 --~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~ 1013 (1129)
+ ++++|.|+.+.|+.|+..|+.. .++ +++++....... ..+++|+||++|++...
T Consensus 219 ~~~~~~~~~~gvf~~iG~~p~~~~~~~-~~~-~~~~g~I~v~~~-~~TsvpGifAaGDv~~~ 277 (305)
T COG0492 219 KGEEKELPVDGVFIAIGHLPNTELLKG-LGV-LDENGYIVVDEE-METSVPGIFAAGDVADK 277 (305)
T ss_pred CCceEEEEeceEEEecCCCCchHHHhh-ccc-cCCCCcEEcCCC-cccCCCCEEEeEeeccC
Confidence 3 4699999999999999887765 334 444444333333 67799999999998653
No 113
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=99.72 E-value=7.7e-18 Score=194.92 Aligned_cols=268 Identities=15% Similarity=0.214 Sum_probs=162.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+.+|+.|++.+++.+|+|+++++..- |++ +... +.+. .......+.........+-.+..+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~----y~~-~~l~-~~~~-~~~~~~~~~~~~~~~~~~~~gv~~ 75 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDE----YNK-PDLS-HVFS-QGQRADDLTRQSAGEFAEQFNLRL 75 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCC----cCc-CcCc-HHHh-CCCCHHHhhcCCHHHHHHhCCCEE
Confidence 36899999999999999999988889999999876310 110 0000 0000 000000000000000000000000
Q ss_pred ---------CCC------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-----CCCCCCeEEEEcCCc
Q psy12350 820 ---------KGN------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-----EPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 820 ---------~~~------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-----~~~~gk~VvVVG~G~ 879 (1129)
..+ ....+....-++++|+.|..|++||.+. +++.....+. ....+|+|+|||+|.
T Consensus 76 ~~~~~V~~id~~~~~v~~~~~~~~yd~LVlATG~~~~~p~i~G~~~----v~~~~~~~~~~~~~~~~~~~~~vvViGgG~ 151 (377)
T PRK04965 76 FPHTWVTDIDAEAQVVKSQGNQWQYDKLVLATGASAFVPPIPGREL----MLTLNSQQEYRAAETQLRDAQRVLVVGGGL 151 (377)
T ss_pred ECCCEEEEEECCCCEEEECCeEEeCCEEEECCCCCCCCCCCCCCce----EEEECCHHHHHHHHHHhhcCCeEEEECCCH
Confidence 000 0112223344455999999999999753 3333332211 112579999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCc----EE
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTG----VR 951 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~----V~ 951 (1129)
+|+|+|..|++.+.+|+++++.+..++. .+.......+ .+. ..+|++.. .+.+++.+. +.
T Consensus 152 ~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~---------~l~---~~gV~i~~~~~v~~i~~~~~~~~v~ 219 (377)
T PRK04965 152 IGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQH---------RLT---EMGVHLLLKSQLQGLEKTDSGIRAT 219 (377)
T ss_pred HHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHH---------HHH---hCCCEEEECCeEEEEEccCCEEEEE
Confidence 9999999999999999999886654321 1111111110 011 12555553 377776532 77
Q ss_pred ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----chhHHHHHHHHHH
Q psy12350 952 FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----LLFNLFDLQVRLF 1026 (1129)
Q Consensus 952 ~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa~~~ 1026 (1129)
+.||+++++|.||+|+|++++..++.. .|+..++. + .+.. .+.++.||||++|++... +.+..+..||+++
T Consensus 220 ~~~g~~i~~D~vI~a~G~~p~~~l~~~-~gl~~~~g-i-~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~ 295 (377)
T PRK04965 220 LDSGRSIEVDAVIAAAGLRPNTALARR-AGLAVNRG-I-VVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMAL 295 (377)
T ss_pred EcCCcEEECCEEEECcCCCcchHHHHH-CCCCcCCC-E-EECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHH
Confidence 889999999999999999999776543 56666543 2 2222 234589999999998642 2456678999999
Q ss_pred HHHHcCCC
Q psy12350 1027 QQLMQGHI 1034 (1129)
Q Consensus 1027 a~~l~g~~ 1034 (1129)
|+++.|..
T Consensus 296 a~n~~g~~ 303 (377)
T PRK04965 296 AKNLLGQN 303 (377)
T ss_pred HHHhcCCC
Confidence 99999854
No 114
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.72 E-value=5.4e-17 Score=191.53 Aligned_cols=280 Identities=14% Similarity=0.179 Sum_probs=163.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+.++|+||||||+||+||..|++ .|++|+|||+.+.+||.+.+. ++.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~g------------------------------ip~- 186 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFG------------------------------IPS- 186 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeec------------------------------Ccc-
Confidence 35799999999999999999999 669999999999999998740 111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+....++.++..+++.++|+ .+++|++|..- +.+ .. ....|| +||+|
T Consensus 187 ---------~~~~~~~~~~~~~~~~~~Gv--~~~~~~~v~~~-----------~~~---~~---~~~~~D-----~vilA 233 (467)
T TIGR01318 187 ---------FKLDKAVLSRRREIFTAMGI--EFHLNCEVGRD-----------ISL---DD---LLEDYD-----AVFLG 233 (467)
T ss_pred ---------ccCCHHHHHHHHHHHHHCCC--EEECCCEeCCc-----------cCH---HH---HHhcCC-----EEEEE
Confidence 11123456666677788887 78888877320 000 00 112489 99999
Q ss_pred cccCCCC-CccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 168 QGHVTLP-SKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 168 tG~~~~p-~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
|| +.+ ..++|||... . |.+.. .|+.... +....... .....
T Consensus 234 tG--a~~~~~~~i~g~~~---~---------------gV~~a~~~l~~~~---------------~~~~~~~~-~~~~~- 276 (467)
T TIGR01318 234 VG--TYRSMRGGLPGEDA---P---------------GVLQALPFLIANT---------------RQLMGLPE-SPEEP- 276 (467)
T ss_pred eC--CCCCCcCCCCCcCC---C---------------CcEEHHHHHHHHH---------------HHhcCCCc-ccccc-
Confidence 99 443 3355666321 1 11110 0100000 00000000 00000
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCc-cccc---------CCCCeEEcCCceEEcC
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHV-KKLR---------FPNNVVKKPDIAELTP 314 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~-~~~~---------~~~~i~~~~~v~~~~~ 314 (1129)
.....|++++| ||+|++|+|.|..+.+.| ++||+++|++.. ++.. ..-++.....+.++.+
T Consensus 277 ----~~~~~gk~VvV----IGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~~~~GV~~~~~~~~~~i~~ 348 (467)
T TIGR01318 277 ----LIDVEGKRVVV----LGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANAREEGVEFLFNVQPVYIEC 348 (467)
T ss_pred ----ccccCCCEEEE----ECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHHHhcCCEEEecCCcEEEEE
Confidence 00012344444 899999999999988887 589999987642 1110 1113455666777742
Q ss_pred --Cc----eEEc---------C---------C--CEeecCEEEEcccccccC-CCCCCCCCeEeecCcccc---cccccc
Q psy12350 315 --TG----VRFQ---------D---------G--SYEQVDIILYCTGYTYRY-PFLHESCGIKVVNKNVQP---LYKHLI 364 (1129)
Q Consensus 315 --~~----v~~~---------d---------g--~~~~~D~VI~atG~~~~~-~~l~~~~~~~~~~~~~~~---l~~~~~ 364 (1129)
++ |.+. + | .++++|.||+|+|++++. +++. ..++.++++..+. .|+..+
T Consensus 349 ~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~-~~gl~~~~~g~i~vd~~~~~~~ 427 (467)
T TIGR01318 349 DEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLA-GHGITLDSWGRIITGDVSYLPY 427 (467)
T ss_pred CCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCcccccc-ccCccCCCCCCEEeCCccccCc
Confidence 22 2331 1 2 257999999999999984 4554 3445554433221 122233
Q ss_pred cCCCCCeEEecccccccc--cccccceeeehhhcccc
Q psy12350 365 NIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 365 ~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~~ 399 (1129)
.++.|++|.+|.....+- ..+..+|+.+|.++...
T Consensus 428 ~T~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~~~ 464 (467)
T TIGR01318 428 QTTNPKIFAGGDAVRGADLVVTAVAEGRQAAQGILDW 464 (467)
T ss_pred cCCCCCEEEECCcCCCccHHHHHHHHHHHHHHHHHHH
Confidence 467899999998864332 23347777777766543
No 115
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.72 E-value=1.1e-17 Score=194.53 Aligned_cols=274 Identities=12% Similarity=0.080 Sum_probs=162.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCC-CCCccc-------cccCcccccc--c
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQY-GLPVHS-------SMYKSLKTNL--P 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~-g~p~~~-------~~y~~~~~~~--~ 808 (1129)
...++|||+|++|+.+|..|++.+++.+|+++++++... |++.+-...+ .-+... ..|....... .
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~----y~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g 78 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP----YERPPLSKSMLLEDSPQLQQVLPANWWQENNVHLHSG 78 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC----CCCCCCCHHHHCCCCccccccCCHHHHHHCCCEEEcC
Confidence 346899999999999999999999777999999986542 1111100000 000000 0000000000 0
Q ss_pred cccccc--cCCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-----CCCCCeEEEEcCCccH
Q psy12350 809 KDLMEL--CGYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-----PFAGKQAVVVGSGQSG 881 (1129)
Q Consensus 809 ~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-----~~~gk~VvVVG~G~Sg 881 (1129)
...... ............+....-++.+|+.|+.|++++... ..++...+..+.. -..+|+|+|||+|.+|
T Consensus 79 ~~V~~id~~~~~v~~~~g~~~~yd~LViATGs~~~~~p~~~~~~--~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig 156 (396)
T PRK09754 79 VTIKTLGRDTRELVLTNGESWHWDQLFIATGAAARPLPLLDALG--ERCFTLRHAGDAARLREVLQPERSVVIVGAGTIG 156 (396)
T ss_pred CEEEEEECCCCEEEECCCCEEEcCEEEEccCCCCCCCCCCCcCC--CCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHH
Confidence 000000 000000000111223334455999998887766432 2344332222211 1247999999999999
Q ss_pred HHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc---EEecC
Q psy12350 882 LDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG---VRFQD 954 (1129)
Q Consensus 882 ~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~---V~~~d 954 (1129)
+|+|..|++.|.+||++++.+..+.. .+.......+.+ ...+|+++.+ +++++.++ +.+.|
T Consensus 157 ~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l------------~~~GV~i~~~~~V~~i~~~~~~~v~l~~ 224 (396)
T PRK09754 157 LELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRH------------QQAGVRILLNNAIEHVVDGEKVELTLQS 224 (396)
T ss_pred HHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHH------------HHCCCEEEeCCeeEEEEcCCEEEEEECC
Confidence 99999999999999999886654421 111111111100 0125666543 77776432 67789
Q ss_pred CcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc----------chhHHHHHHHH
Q psy12350 955 GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT----------LLFNLFDLQVR 1024 (1129)
Q Consensus 955 G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~----------~~~~~~e~qa~ 1024 (1129)
|+++++|.||+|+|.+|+..++.. .|+..++ ++ .+..+ +.++.||||++|++... ..++.+..||+
T Consensus 225 g~~i~aD~Vv~a~G~~pn~~l~~~-~gl~~~~-gi-~vd~~-~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~ 300 (396)
T PRK09754 225 GETLQADVVIYGIGISANDQLARE-ANLDTAN-GI-VIDEA-CRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQAQ 300 (396)
T ss_pred CCEEECCEEEECCCCChhhHHHHh-cCCCcCC-CE-EECCC-CccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHHHH
Confidence 999999999999999999766543 5666543 22 22222 34589999999998631 24688999999
Q ss_pred HHHHHHcCCC
Q psy12350 1025 LFQQLMQGHI 1034 (1129)
Q Consensus 1025 ~~a~~l~g~~ 1034 (1129)
.+|+++.|..
T Consensus 301 ~aa~ni~g~~ 310 (396)
T PRK09754 301 IAAAAMLGLP 310 (396)
T ss_pred HHHHHhcCCC
Confidence 9999998754
No 116
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=99.71 E-value=1.4e-17 Score=207.12 Aligned_cols=270 Identities=17% Similarity=0.189 Sum_probs=168.3
Q ss_pred CccccccCCchhhHHHHHHhhC--CCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccccc-----cc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAG--NGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDL-----ME 813 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g--~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~-----~~ 813 (1129)
.++|||+|++|+.+|.+|++.+ ..++|+||++++.++ |++- ....+ + .....+.+..+..... .-
T Consensus 5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~----Y~r~-~L~~~-~--~~~~~~~l~~~~~~~~~~~gI~~ 76 (847)
T PRK14989 5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA----YDRV-HLSSY-F--SHHTAEELSLVREGFYEKHGIKV 76 (847)
T ss_pred cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc----ccCC-cchHh-H--cCCCHHHccCCCHHHHHhCCCEE
Confidence 6899999999999999998764 347999999988653 1110 00000 0 0000001111100000 00
Q ss_pred ccCC---CCCC-------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCC-----CCCCeEEEEcCC
Q psy12350 814 LCGY---GHKG-------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEP-----FAGKQAVVVGSG 878 (1129)
Q Consensus 814 ~~~~---~~~~-------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~-----~~gk~VvVVG~G 878 (1129)
+.+. .... .....+....-|+++|+.|++|++||.+. ..++......+... ..+|+++|||+|
T Consensus 77 ~~g~~V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p~~p~ipG~~~--~~v~~~rt~~d~~~l~~~~~~~k~vvVIGgG 154 (847)
T PRK14989 77 LVGERAITINRQEKVIHSSAGRTVFYDKLIMATGSYPWIPPIKGSET--QDCFVYRTIEDLNAIEACARRSKRGAVVGGG 154 (847)
T ss_pred EcCCEEEEEeCCCcEEEECCCcEEECCEEEECCCCCcCCCCCCCCCC--CCeEEECCHHHHHHHHHHHhcCCeEEEECCC
Confidence 0000 0000 00112233344555999999999999874 22333333222211 257899999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC------
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT------ 948 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~------ 948 (1129)
.+|+|+|..|++.|.+|+++++.+..++ +.+.......+.+. ..+|+++.+ ++++.++
T Consensus 155 ~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~------------~~GV~v~~~~~v~~I~~~~~~~~~ 222 (847)
T PRK14989 155 LLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIE------------SMGVRVHTSKNTLEIVQEGVEARK 222 (847)
T ss_pred HHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHH------------HCCCEEEcCCeEEEEEecCCCceE
Confidence 9999999999999999999998765543 22222222221111 125666654 7777532
Q ss_pred cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----chhHHHHHHH
Q psy12350 949 GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----LLFNLFDLQV 1023 (1129)
Q Consensus 949 ~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa 1023 (1129)
.+.+.||+++++|.||+|+|++|+..++. ..|+++++++...+..+ +.++.||||++|++... ..+..+..||
T Consensus 223 ~v~~~dG~~i~~D~Vv~A~G~rPn~~L~~-~~Gl~~~~~G~I~VD~~-l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a 300 (847)
T PRK14989 223 TMRFADGSELEVDFIVFSTGIRPQDKLAT-QCGLAVAPRGGIVINDS-CQTSDPDIYAIGECASWNNRVFGLVAPGYKMA 300 (847)
T ss_pred EEEECCCCEEEcCEEEECCCcccCchHHh-hcCccCCCCCcEEECCC-CcCCCCCEEEeecceeEcCcccccHHHHHHHH
Confidence 37789999999999999999999977554 47777776544444333 34589999999998743 2457788999
Q ss_pred HHHHHHHcCCC
Q psy12350 1024 RLFQQLMQGHI 1034 (1129)
Q Consensus 1024 ~~~a~~l~g~~ 1034 (1129)
+.+|..|.|..
T Consensus 301 ~vaa~~i~g~~ 311 (847)
T PRK14989 301 QVAVDHLLGSE 311 (847)
T ss_pred HHHHHHhcCCC
Confidence 99999998854
No 117
>KOG2495|consensus
Probab=99.71 E-value=2e-17 Score=177.41 Aligned_cols=298 Identities=14% Similarity=0.171 Sum_probs=183.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
++++|+|+|+|++|.+.++.|-. ..++|+|+.-++.. . +...+|.....--
T Consensus 54 kKk~vVVLGsGW~a~S~lk~ldt--s~YdV~vVSPRnyF----l---------------------FTPLLpS~~vGTv-- 104 (491)
T KOG2495|consen 54 KKKRVVVLGSGWGAISLLKKLDT--SLYDVTVVSPRNYF----L---------------------FTPLLPSTTVGTV-- 104 (491)
T ss_pred CCceEEEEcCchHHHHHHHhccc--cccceEEeccccce----E---------------------EeeccCCccccce--
Confidence 46899999999999999999998 77999999876642 1 1112222211111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc---cceEEecceeeeEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT---VGFYLFDLQVRFFL 164 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~~~~~l 164 (1129)
....+.+=++..+.+-+-..+ .+..+-..|++ +...++.+.+..+. .....|| ||
T Consensus 105 -----------e~rSIvEPIr~i~r~k~~~~~-y~eAec~~iDp-----~~k~V~~~s~t~~~~~~e~~i~YD-----yL 162 (491)
T KOG2495|consen 105 -----------ELRSIVEPIRAIARKKNGEVK-YLEAECTKIDP-----DNKKVHCRSLTADSSDKEFVIGYD-----YL 162 (491)
T ss_pred -----------eehhhhhhHHHHhhccCCCce-EEecccEeecc-----cccEEEEeeeccCCCcceeeeccc-----EE
Confidence 111233334444444322111 22334445554 44556655544332 3456799 99
Q ss_pred EEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc
Q psy12350 165 QLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT 244 (1129)
Q Consensus 165 vvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (1129)
|+|+| +.++.+.+||-.++..- .+...+|.+|+...... ++++.. ..+.
T Consensus 163 ViA~G--A~~~TFgipGV~e~~~F----LKEv~dAqeIR~~~~~~-----------------------le~a~~--~~l~ 211 (491)
T KOG2495|consen 163 VIAVG--AEPNTFGIPGVEENAHF----LKEVEDAQEIRRKVIDN-----------------------LEKAEL--PGLS 211 (491)
T ss_pred EEecc--CCCCCCCCCchhhchhh----hhhhhHHHHHHHHHHHH-----------------------HHHhhc--CCCC
Confidence 99999 88999999884332111 11233343333221111 111111 1111
Q ss_pred cccccceeEeeceeeeecCCCCCCCCcccchhhhcccc--------------cEEEEccccCCcccccC-----------
Q psy12350 245 EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA--------------TTVFLSHHSEHVKKLRF----------- 299 (1129)
Q Consensus 245 ~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~--------------~~V~lv~r~~~~~~~~~----------- 299 (1129)
+...++.+ .++| ||||++|+|+|.+|+..- -+|||++-.+.+++..+
T Consensus 212 ~eerkRlL----h~VV----VGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f 283 (491)
T KOG2495|consen 212 DEERKRLL----HFVV----VGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQF 283 (491)
T ss_pred hHHhhheE----EEEE----ECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHh
Confidence 11112222 2344 899999999999987643 25999999887765422
Q ss_pred ---CCCeEEcCCceEEcCCceEEcCC----CEeecCEEEEcccccccCCC-------CCCCC--CeEeecCccccccccc
Q psy12350 300 ---PNNVVKKPDIAELTPTGVRFQDG----SYEQVDIILYCTGYTYRYPF-------LHESC--GIKVVNKNVQPLYKHL 363 (1129)
Q Consensus 300 ---~~~i~~~~~v~~~~~~~v~~~dg----~~~~~D~VI~atG~~~~~~~-------l~~~~--~~~~~~~~~~~l~~~~ 363 (1129)
.-++..++.|+.++++.++..++ ++++.-.++|+||-.+. |+ +++.. ++.+|+-..++..+++
T Consensus 284 ~~~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~lm~~i~e~~rr~L~vDE~LrV~G~~nv 362 (491)
T KOG2495|consen 284 VRDGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKDLMKQIDEQGRRGLAVDEWLRVKGVKNV 362 (491)
T ss_pred hhccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhhHhhcCCccCceeeeeeceeeccCcCce
Confidence 12566677799999888776654 46799999999999876 33 23334 5777777778888888
Q ss_pred ccCCCCCeEEecccccccccccccceeeehhhcccc
Q psy12350 364 INIEHPSMCIIGYTYRYPFLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 364 ~~~~~p~l~~~G~~~~~~~~~~~~~~~~~a~~~~~~ 399 (1129)
|+++|.+ .+-|++.++++|+ |||.++|+++...
T Consensus 363 fAiGDca-~~~~~~~tAQVA~--QqG~yLAk~fn~m 395 (491)
T KOG2495|consen 363 FAIGDCA-DQRGLKPTAQVAE--QQGAYLAKNFNKM 395 (491)
T ss_pred EEecccc-ccccCccHHHHHH--HHHHHHHHHHHHH
Confidence 8888866 5667777888888 9987777665543
No 118
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.71 E-value=4.8e-17 Score=192.67 Aligned_cols=282 Identities=18% Similarity=0.205 Sum_probs=163.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+||||||||++||..|++ .|++|+|||+.+.+||.+.|. ++.
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~g------------------------------ip~-- 188 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYG------------------------------IPN-- 188 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeecc------------------------------CCC--
Confidence 3799999999999999999999 669999999999999988741 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
+....++..+..+++++.|+ .+++++.|.. +. .. +.....|| +||+||
T Consensus 189 --------~~~~~~~~~~~~~~~~~~Gv--~~~~~~~v~~-~~---------------~~-~~~~~~~d-----~VilAt 236 (485)
T TIGR01317 189 --------MKLDKAIVDRRIDLLSAEGI--DFVTNTEIGV-DI---------------SA-DELKEQFD-----AVVLAG 236 (485)
T ss_pred --------ccCCHHHHHHHHHHHHhCCC--EEECCCEeCC-cc---------------CH-HHHHhhCC-----EEEEcc
Confidence 11112344444455666776 7788877631 00 00 01123488 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|.. .|..+++||... +| .+.. .++..... . .....+...
T Consensus 237 Ga~-~~~~l~i~G~~~---~g---------------V~~~~~~l~~~~~-------------------~-~~~~~~~~~- 276 (485)
T TIGR01317 237 GAT-KPRDLPIPGREL---KG---------------IHYAMEFLPSATK-------------------A-LLGKDFKDI- 276 (485)
T ss_pred CCC-CCCcCCCCCcCC---CC---------------cEeHHHHHHHHhh-------------------h-hcccccccc-
Confidence 932 377777877321 11 1111 11100000 0 000000000
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccc-ccEEEEccccCCccccc------------------CCC-------
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTE-ATTVFLSHHSEHVKKLR------------------FPN------- 301 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~-~~~V~lv~r~~~~~~~~------------------~~~------- 301 (1129)
......||+|+| ||||++|+|+|..+.+. +++|+++++.+..+... ..+
T Consensus 277 -~~~~~~gk~VvV----iGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv 351 (485)
T TIGR01317 277 -IFIKAKGKKVVV----IGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGR 351 (485)
T ss_pred -ccccCCCCEEEE----ECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCc
Confidence 000112444455 89999999997765555 57899998765432110 000
Q ss_pred -CeEEcCCceEEcCC---c---eEE--------cCCC-----------EeecCEEEEccccc-ccCCCCCCCCCeEeecC
Q psy12350 302 -NVVKKPDIAELTPT---G---VRF--------QDGS-----------YEQVDIILYCTGYT-YRYPFLHESCGIKVVNK 354 (1129)
Q Consensus 302 -~i~~~~~v~~~~~~---~---v~~--------~dg~-----------~~~~D~VI~atG~~-~~~~~l~~~~~~~~~~~ 354 (1129)
.+.....+.++.++ . |.+ ++|. ++++|.||+|+|+. ++.++++ ..++..+.+
T Consensus 352 ~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~-~~gl~~~~~ 430 (485)
T TIGR01317 352 DPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLD-DFGVKKTRR 430 (485)
T ss_pred cceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCcccccc-ccCcccCCC
Confidence 11234445555431 1 221 1332 57999999999996 7788876 345655444
Q ss_pred cccccccccccCCCCCeEEeccccccc--ccccccceeeehhhccccccc
Q psy12350 355 NVQPLYKHLINIEHPSMCIIGYTYRYP--FLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 355 ~~~~l~~~~~~~~~p~l~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
..+........++.|++|.+|.....+ ...+..+++.+|.++..++.+
T Consensus 431 G~i~~~~~~~~Ts~~gVfAaGD~~~g~~~~~~Av~~G~~AA~~i~~~L~g 480 (485)
T TIGR01317 431 GNISAGYDDYSTSIPGVFAAGDCRRGQSLIVWAINEGRKAAAAVDRYLMG 480 (485)
T ss_pred CCEEecCCCceECCCCEEEeeccCCCcHHHHHHHHHHHHHHHHHHHHHhc
Confidence 433222222346789999999875432 223448888888888776655
No 119
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=99.71 E-value=5.4e-17 Score=190.99 Aligned_cols=266 Identities=17% Similarity=0.175 Sum_probs=157.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-cCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGY 817 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~ 817 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||++.+.. +. +..+ ............+.-..+ .+.
T Consensus 133 ~~~V~IIG~G~aGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~gi-p~---~~~~--~~~~~~~~~~l~~~gv~~~~~~ 204 (449)
T TIGR01316 133 HKKVAVIGAGPAGLACASELAKAG--HSVTVFEALHKPGGVVTYGI-PE---FRLP--KEIVVTEIKTLKKLGVTFRMNF 204 (449)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCcEeeecC-CC---ccCC--HHHHHHHHHHHHhCCcEEEeCC
Confidence 346899999999999999999999 99999999999999887531 10 0000 000000000000000000 000
Q ss_pred CCCCC-CCC--CCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC--------------CCCCCCCeEEEEcCCc
Q psy12350 818 GHKGN-ADK--SYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT--------------PEPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 818 ~~~~~-~~~--~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~--------------~~~~~gk~VvVVG~G~ 879 (1129)
..... ... .......++.+|+ .|+.|++||.+. .| ++++.++.. .....||+|+|||+|+
T Consensus 205 ~v~~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~ 282 (449)
T TIGR01316 205 LVGKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEEL-CG-VYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGN 282 (449)
T ss_pred ccCCcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCC-CC-cEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCH
Confidence 00000 000 0001222334887 799999999763 22 555443311 1124689999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C----cEE
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T----GVR 951 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~----~V~ 951 (1129)
+|+|+|..+++.|++||++.+.... .+..... .+......+|+++.. +.++.+ + +|+
T Consensus 283 ~a~d~A~~l~~~G~~Vtlv~~~~~~-~~~~~~~--------------~~~~l~~~GV~~~~~~~~~~i~~~~~g~v~~v~ 347 (449)
T TIGR01316 283 TAVDSARTALRLGAEVHCLYRRTRE-DMTARVE--------------EIAHAEEEGVKFHFLCQPVEIIGDEEGNVRAVK 347 (449)
T ss_pred HHHHHHHHHHHcCCEEEEEeecCcc-cCCCCHH--------------HHHHHHhCCCEEEeccCcEEEEEcCCCeEEEEE
Confidence 9999999999999999999875321 1100000 000000124444322 444421 1 122
Q ss_pred ec---------CC-----------cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccc
Q psy12350 952 FQ---------DG-----------SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPR 1011 (1129)
Q Consensus 952 ~~---------dG-----------~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~ 1011 (1129)
+. +| +++++|.||+|+|+.++..++.. .|+.+++++...+.. .+.++.|+||++|++.
T Consensus 348 ~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~-~gl~~~~~G~i~vd~-~~~Ts~~~VfA~GD~~ 425 (449)
T TIGR01316 348 FRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAET-TRLKTSERGTIVVDE-DQRTSIPGVFAGGDII 425 (449)
T ss_pred EEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhc-cCcccCCCCeEEeCC-CCccCCCCEEEecCCC
Confidence 21 22 25899999999999999776654 567766544333322 2456899999999987
Q ss_pred cc-chhHHHHHHHHHHHHHHc
Q psy12350 1012 HT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1012 ~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
.+ .....+..|++.+|..+.
T Consensus 426 ~g~~~v~~Ai~~G~~AA~~I~ 446 (449)
T TIGR01316 426 LGAATVIRAMGQGKRAAKSIN 446 (449)
T ss_pred CCcHHHHHHHHHHHHHHHHHH
Confidence 54 356788999999998774
No 120
>KOG1335|consensus
Probab=99.71 E-value=2.1e-17 Score=173.72 Aligned_cols=270 Identities=18% Similarity=0.256 Sum_probs=169.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccc------cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKD------LM 812 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~------~~ 812 (1129)
..+++|||+||.|..||.+..+.| ++.+|+|++..+||+|.. .|| +|.+..++.+......+. -.
T Consensus 39 d~DvvvIG~GpGGyvAAikAaQlG--lkTacvEkr~~LGGTcLn---vGc----IPSKALL~nSh~yh~~q~~~~~~rGi 109 (506)
T KOG1335|consen 39 DYDVVVIGGGPGGYVAAIKAAQLG--LKTACVEKRGTLGGTCLN---VGC----IPSKALLNNSHLYHEAQHEDFASRGI 109 (506)
T ss_pred cCCEEEECCCCchHHHHHHHHHhc--ceeEEEeccCccCceeee---ccc----cccHHHhhhhHHHHHHhhhHHHhcCc
Confidence 468899999999999999999999 999999999999999984 466 444333332211111000 00
Q ss_pred cccCCC------------------------CCCC------CCCCCCChh-----------hhhh-------ccCCCCCCC
Q psy12350 813 ELCGYG------------------------HKGN------ADKSYIGAK-----------DVLE-------NYNHPIYPE 844 (1129)
Q Consensus 813 ~~~~~~------------------------~~~~------~~~~~~~~~-----------~v~~-------~~~~P~~P~ 844 (1129)
..+... |..+ ....|.... ++.+ +||. +++
T Consensus 110 ~vs~~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSe--V~~ 187 (506)
T KOG1335|consen 110 DVSSVSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSE--VTP 187 (506)
T ss_pred cccceecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCc--cCC
Confidence 000000 0000 000011000 0110 6662 456
Q ss_pred CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCc-cchhhhhccccEEEEecC
Q psy12350 845 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGL-DITLDIATRASTVFLSHH 923 (1129)
Q Consensus 845 i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~-~~~~~~~~~~~~~~~~~~ 923 (1129)
+||++--..+++.|..-... +...|+++|||+|.+|+|++.-..++|++||+++..+... .|+..+....++++...
T Consensus 188 ~PGI~IDekkIVSStgALsL-~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~qr~L~kQ- 265 (506)
T KOG1335|consen 188 FPGITIDEKKIVSSTGALSL-KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQ- 265 (506)
T ss_pred CCCeEecCceEEecCCccch-hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHHHHHHHhc-
Confidence 77765322344444433333 3458999999999999999999999999999998755433 23333333333322221
Q ss_pred CccccccCCCCCeEE--cCCeeEEeCCc-----EEec---CCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCccc
Q psy12350 924 SERVTSLCLPNNVVL--KPDVAELTPTG-----VRFQ---DGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQ 990 (1129)
Q Consensus 924 ~~~~~~~~~~~~V~~--~~~i~~v~~~~-----V~~~---dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~ 990 (1129)
+++. .+.+...+.++ |++. +|+ +++||++++|+|++|-+.-|. +..|++.|++...
T Consensus 266 -----------gikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv 334 (506)
T KOG1335|consen 266 -----------GIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRV 334 (506)
T ss_pred -----------CceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccce
Confidence 2333 23354444322 3332 333 579999999999999766665 4478888766554
Q ss_pred ccccceeecCCCCcEEEccccccchh-HHHHHHHHHHHHHHcCC
Q psy12350 991 PLYKHTINIEHPTMFILGVPRHTLLF-NLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 991 ~ly~~~~~~~~p~l~~iG~~~~~~~~-~~~e~qa~~~a~~l~g~ 1033 (1129)
++ ..-|.+.+||||.||++..++++ +-+|-|+..+...+.|.
T Consensus 335 ~v-~~~f~t~vP~i~~IGDv~~gpMLAhkAeeegI~~VE~i~g~ 377 (506)
T KOG1335|consen 335 IV-NTRFQTKVPHIYAIGDVTLGPMLAHKAEEEGIAAVEGIAGG 377 (506)
T ss_pred ec-cccccccCCceEEecccCCcchhhhhhhhhchhheeeeccc
Confidence 43 34467799999999999877654 89999999999998875
No 121
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.70 E-value=5.5e-17 Score=193.01 Aligned_cols=274 Identities=19% Similarity=0.263 Sum_probs=166.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc------cCCcCcccccCCCCCCCC--------------------CCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ------ADNIGGTWLYTEHIGCDQ--------------------YGL 793 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~------~~~~GG~w~~~~~~g~~~--------------------~g~ 793 (1129)
.+++|||+|++|+++|.++.+.| .+|+|+|+ ...+||+|.. .||-+ +|+
T Consensus 5 ~DviIIG~G~aG~~aA~~~~~~g--~~v~lie~~~~~~g~~~~Gg~c~n---~gc~P~k~l~~~a~~~~~~~~~~~~~G~ 79 (475)
T PRK06327 5 FDVVVIGAGPGGYVAAIRAAQLG--LKVACIEAWKNPKGKPALGGTCLN---VGCIPSKALLASSEEFENAGHHFADHGI 79 (475)
T ss_pred eeEEEECCCHHHHHHHHHHHhCC--CeEEEEecccCCCCCCCcCCcccc---ccccHHHHHHHHHHHHHHHHhhHHhcCc
Confidence 47899999999999999999999 99999998 4679999973 34411 011
Q ss_pred Ccccc--ccCccccc----------cccccccccCC-----------------CCC--CCCCCCCCChhhhhhccCCCCC
Q psy12350 794 PVHSS--MYKSLKTN----------LPKDLMELCGY-----------------GHK--GNADKSYIGAKDVLENYNHPIY 842 (1129)
Q Consensus 794 p~~~~--~y~~~~~~----------~~~~~~~~~~~-----------------~~~--~~~~~~~~~~~~v~~~~~~P~~ 842 (1129)
+.... .|+.+... ......+.... ... ......+..+.-|+.+|+.|+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~ 159 (475)
T PRK06327 80 HVDGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRH 159 (475)
T ss_pred cCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCC
Confidence 10000 00000000 00000000000 000 0000112223344459999975
Q ss_pred CCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEe
Q psy12350 843 PEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLS 921 (1129)
Q Consensus 843 P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~ 921 (1129)
|+ +.+ +.+..+++++........+|+|+|||+|.+|+|+|..+++.+.+||++++.+..++. .+.+.....+.
T Consensus 160 ~p--~~~-~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~--- 233 (475)
T PRK06327 160 LP--GVP-FDNKIILDNTGALNFTEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAAKA--- 233 (475)
T ss_pred CC--CCC-CCCceEECcHHHhcccccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHHHHH---
Confidence 53 322 233433333321112234799999999999999999999999999999987654432 11111111110
Q ss_pred cCCccccccCCCCCeEEcCC--eeEEeCC--c--EEecC--C--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCccc
Q psy12350 922 HHSERVTSLCLPNNVVLKPD--VAELTPT--G--VRFQD--G--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQ 990 (1129)
Q Consensus 922 ~~~~~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~d--G--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~ 990 (1129)
+. ..+|++..+ |.+++.+ + +.+.+ | +++++|.||+|+|++|+.++|. +.+|+++++++..
T Consensus 234 ------l~---~~gi~i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i 304 (475)
T PRK06327 234 ------FT---KQGLDIHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFI 304 (475)
T ss_pred ------HH---HcCcEEEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeE
Confidence 10 125666544 7777543 3 44444 3 4689999999999999988654 3467777766544
Q ss_pred ccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 991 PLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 991 ~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.+... +.++.||||++|++... ...+.+..|++.+|..+.|..
T Consensus 305 ~vd~~-~~Ts~~~VyA~GD~~~~~~~~~~A~~~G~~aa~~i~g~~ 348 (475)
T PRK06327 305 PVDDH-CRTNVPNVYAIGDVVRGPMLAHKAEEEGVAVAERIAGQK 348 (475)
T ss_pred eECCC-CccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHcCCC
Confidence 44433 34589999999998754 356889999999999998743
No 122
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.70 E-value=3.8e-17 Score=194.66 Aligned_cols=267 Identities=18% Similarity=0.254 Sum_probs=164.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc-----ccCcc-----------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS-----MYKSL----------- 803 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~-----~y~~~----------- 803 (1129)
.+++|||+||+|+.+|..|.+.| .+|+|+|+. .+||+|.. .|| +|.+.. .+..+
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G--~~v~lie~~-~~GG~c~~---~gc----iPsk~l~~~a~~~~~~~~~~~~g~~~~ 74 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLG--LKTALVEKG-KLGGTCLH---KGC----IPSKALLHSAEVFQTAKKASPFGISVS 74 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCC--CeEEEEEcc-CCCcceEc---CCc----CchHHHHHHHHHHHHHHHHHhcCccCC
Confidence 47899999999999999999999 999999985 79999984 354 221110 00000
Q ss_pred --ccccc-----------------cccccccCCCC---------CC-------------CCC--CCCCChhhhhhccCCC
Q psy12350 804 --KTNLP-----------------KDLMELCGYGH---------KG-------------NAD--KSYIGAKDVLENYNHP 840 (1129)
Q Consensus 804 --~~~~~-----------------~~~~~~~~~~~---------~~-------------~~~--~~~~~~~~v~~~~~~P 840 (1129)
..+.. ....+..+..+ +. ... ..+....-|+++|+.|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p 154 (472)
T PRK05976 75 GPALDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRP 154 (472)
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCC
Confidence 00000 00000000000 00 000 0122233344599999
Q ss_pred CCCCCCCCCCCCCc-EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEE
Q psy12350 841 IYPEFKGKDMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTV 918 (1129)
Q Consensus 841 ~~P~i~G~~~f~g~-~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~ 918 (1129)
+.| ||.+ +.+. ++++.+...... .+++|+|||+|.+|+|+|..|++.|.+|+++++.+..++.. +.+.....+.
T Consensus 155 ~~~--p~~~-~~~~~~~~~~~~~~~~~-~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~ 230 (472)
T PRK05976 155 VEL--PGLP-FDGEYVISSDEALSLET-LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARL 230 (472)
T ss_pred CCC--CCCC-CCCceEEcchHhhCccc-cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHH
Confidence 755 3332 2233 555555443332 36999999999999999999999999999999876554321 1111111111
Q ss_pred EEecCCccccccCCCCCeEEcCC--eeEEe---CCcE---EecCCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCC
Q psy12350 919 FLSHHSERVTSLCLPNNVVLKPD--VAELT---PTGV---RFQDGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNK 987 (1129)
Q Consensus 919 ~~~~~~~~~~~~~~~~~V~~~~~--i~~v~---~~~V---~~~dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~ 987 (1129)
+. ..+|++..+ +.+++ ++++ .+.+|+ ++++|.||+|+|.+|+.+++. +..++..++.
T Consensus 231 ---------l~---~~gI~i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~~~g 298 (472)
T PRK05976 231 ---------LK---KLGVRVVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDVEGG 298 (472)
T ss_pred ---------HH---hcCCEEEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCCCCchhcCceecCC
Confidence 10 125666554 77775 3443 345674 589999999999999987653 2345544332
Q ss_pred cccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
. ..+..+ +.++.||||++|++... .....+..||+.++..+.|..
T Consensus 299 ~-i~Vd~~-l~ts~~~IyAiGD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (472)
T PRK05976 299 F-IQIDDF-CQTKERHIYAIGDVIGEPQLAHVAMAEGEMAAEHIAGKK 344 (472)
T ss_pred E-EEECCC-cccCCCCEEEeeecCCCcccHHHHHHHHHHHHHHHcCCC
Confidence 2 233332 34578999999998754 356889999999999998753
No 123
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=99.70 E-value=2.2e-17 Score=206.14 Aligned_cols=275 Identities=15% Similarity=0.206 Sum_probs=163.4
Q ss_pred ccccccCCchhhHHHHHHhhC-CCcceEEEcccCCcCcc-cccCCC-CCCCC-CCCCcc-ccccCccccc--cccccccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAG-NGFTCTTFEQADNIGGT-WLYTEH-IGCDQ-YGLPVH-SSMYKSLKTN--LPKDLMEL 814 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g-~~~~v~v~E~~~~~GG~-w~~~~~-~g~~~-~g~p~~-~~~y~~~~~~--~~~~~~~~ 814 (1129)
++|||+|++|+.+|.+|++.+ ..++|+|||+++.++-. .....+ .|... ..+... ...|+....+ ........
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~I 80 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPNYNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQI 80 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCCcccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEEE
Confidence 479999999999999998875 35799999998876411 000000 00000 000000 0001000000 00000000
Q ss_pred c--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-----CCCCCeEEEEcCCccHHHHHHH
Q psy12350 815 C--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-----PFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 815 ~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-----~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
. ...........+....-++++|+.|+.|++||.+. . .+++.....+.. ...+|+|+|||+|.+|+|+|..
T Consensus 81 d~~~k~V~~~~g~~~~yD~LVlATGs~p~~p~ipG~~~-~-~v~~~rt~~d~~~i~~~~~~~k~vvVVGgG~~GlE~A~~ 158 (785)
T TIGR02374 81 DTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADK-K-GVYVFRTIEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVG 158 (785)
T ss_pred ECCCCEEEECCCcEeeCCEEEECCCCCcCCCCCCCCCC-C-CEEEeCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 0 00000000112333445556999999999999864 2 243333222211 1247999999999999999999
Q ss_pred HHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEecCCcEee
Q psy12350 888 IATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQDGSYEQ 959 (1129)
Q Consensus 888 la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~dG~~~~ 959 (1129)
|++.|.+|+++++.+..++ +.+.......+.+ . ..+|+++.+ +.++.++ +|+++||++++
T Consensus 159 L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l---------~---~~GV~v~~~~~v~~i~~~~~~~~v~~~dG~~i~ 226 (785)
T TIGR02374 159 LQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQREL---------E---QKGLTFLLEKDTVEIVGATKADRIRFKDGSSLE 226 (785)
T ss_pred HHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHH---------H---HcCCEEEeCCceEEEEcCCceEEEEECCCCEEE
Confidence 9999999999988765432 1221111111111 0 125655544 6777543 37889999999
Q ss_pred ccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----chhHHHHHHHHHHHHHHcCCC
Q psy12350 960 VDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 960 ~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+|.||+|+|++|+.+++.. .|+++++....+.+ +.+++||||++|++... ..+..+..||+.+|.++.|..
T Consensus 227 ~D~Vi~a~G~~Pn~~la~~-~gl~~~ggI~Vd~~---~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~ni~g~~ 302 (785)
T TIGR02374 227 ADLIVMAAGIRPNDELAVS-AGIKVNRGIIVNDS---MQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLADHICGVE 302 (785)
T ss_pred cCEEEECCCCCcCcHHHHh-cCCccCCCEEECCC---cccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999876543 66666643332333 34589999999998642 234567889999999998864
No 124
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=99.70 E-value=1.1e-16 Score=200.93 Aligned_cols=268 Identities=18% Similarity=0.213 Sum_probs=161.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
...|+|||+||+||++|..|.+.| ++|+|||+.+.+||...+ |||... +-..+.......+... +..
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G--~~VtVfE~~~~~GG~l~y---------GIP~~r-lp~~vi~~~i~~l~~~-Gv~ 372 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEG--FPVTVFEAFHDLGGVLRY---------GIPEFR-LPNQLIDDVVEKIKLL-GGR 372 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CeEEEEeeCCCCCceEEc---------cCCCCc-ChHHHHHHHHHHHHhh-cCe
Confidence 457899999999999999999999 999999999999999874 444211 0000000000000000 111
Q ss_pred CCC----------CCCCCCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC---------------CCCCCCCeE
Q psy12350 819 HKG----------NADKSYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT---------------PEPFAGKQA 872 (1129)
Q Consensus 819 ~~~----------~~~~~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~---------------~~~~~gk~V 872 (1129)
+.. +..........++.+|+ .|+.+++||.+. .| ++.+.+|.. .....||+|
T Consensus 373 f~~n~~vG~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl-~G-V~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~V 450 (944)
T PRK12779 373 FVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHL-LG-VMSANEFLTRVNLMRGLDDDYETPLPEVKGKEV 450 (944)
T ss_pred EEEeEEeccEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcC-cC-cEEHHHHHHHHHhhccccccccccccccCCCEE
Confidence 000 00001112334455888 699999999653 22 333333321 113468999
Q ss_pred EEEcCCccHHHHHHHHHhcCCEEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEe---
Q psy12350 873 VVVGSGQSGLDITLDIATTGKQAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELT--- 946 (1129)
Q Consensus 873 vVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~--- 946 (1129)
+|||||++|+|+|..+.+.|++|+++.+... .++..+.....+ ...+|++.. .+.++.
T Consensus 451 vVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a----------------~eeGV~~~~~~~p~~i~~d~ 514 (944)
T PRK12779 451 FVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHA----------------LEEGINLAVLRAPREFIGDD 514 (944)
T ss_pred EEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHH----------------HHCCCEEEeCcceEEEEecC
Confidence 9999999999999999999999999976532 111111000000 001222211 122221
Q ss_pred -------------------CCc--EEecCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCC
Q psy12350 947 -------------------PTG--VRFQDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 947 -------------------~~~--V~~~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
.++ ....+|+ ++++|.||+|+|+.++..+.....++++++++...+....+.++.|+
T Consensus 515 ~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pg 594 (944)
T PRK12779 515 HTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKG 594 (944)
T ss_pred CCCEEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCC
Confidence 111 1112343 47999999999999985433333567776655444444445678999
Q ss_pred cEEEccccccc-hhHHHHHHHHHHHHHHcCCCCCC
Q psy12350 1004 MFILGVPRHTL-LFNLFDLQVRLFQQLMQGHITLP 1037 (1129)
Q Consensus 1004 l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~~~lp 1037 (1129)
||++|++..+. ....|..+++.+|..+.....+.
T Consensus 595 VFAaGD~~~G~~~vv~Ai~eGr~AA~~I~~~L~~~ 629 (944)
T PRK12779 595 VYSGGDAARGGSTAIRAAGDGQAAAKEIVGEIPFT 629 (944)
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999998664 56778889999998887655444
No 125
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.70 E-value=1.7e-16 Score=184.27 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=40.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||||||+||..|++...+++|+|||+.+.+||++.|
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 457999999999999999999864467999999999999999985
No 126
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=99.69 E-value=1.7e-16 Score=188.01 Aligned_cols=261 Identities=18% Similarity=0.189 Sum_probs=158.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
..++|||+|++|+++|..|.+.| ++|+|||+++.+||.+.+.. +.- ..+ ..+.. .....+..+ +..+
T Consensus 141 ~~VvIIGgGpaGl~aA~~l~~~g--~~V~lie~~~~~gG~l~~gi-p~~---~~~--~~~~~----~~~~~l~~~-gv~~ 207 (457)
T PRK11749 141 KKVAVIGAGPAGLTAAHRLARKG--YDVTIFEARDKAGGLLRYGI-PEF---RLP--KDIVD----REVERLLKL-GVEI 207 (457)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCcEeeccC-CCc---cCC--HHHHH----HHHHHHHHc-CCEE
Confidence 46899999999999999999999 99999999999999886421 110 000 00000 000000000 0111
Q ss_pred CCCC-----C----CCCCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccCCCC--------CCCCCCeEEEEcCCccH
Q psy12350 820 KGNA-----D----KSYIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDYRTP--------EPFAGKQAVVVGSGQSG 881 (1129)
Q Consensus 820 ~~~~-----~----~~~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~~~~--------~~~~gk~VvVVG~G~Sg 881 (1129)
.... . ........++.+|+. |+.+++||.+. . .++++.++... ....+|+|+|||+|.+|
T Consensus 208 ~~~~~v~~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~-~-gv~~~~~~l~~~~~~~~~~~~~~g~~VvViGgG~~g 285 (457)
T PRK11749 208 RTNTEVGRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENL-G-GVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTA 285 (457)
T ss_pred EeCCEECCccCHHHHHhhCCEEEEccCCCCCCCCCCCCccC-C-CcEEHHHHHHHHhhccccccCCCCCeEEEECCCHHH
Confidence 0000 0 001112233448874 78888999753 2 35554433211 11368999999999999
Q ss_pred HHHHHHHHhcCC-EEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-----EEe
Q psy12350 882 LDITLDIATTGK-QAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-----VRF 952 (1129)
Q Consensus 882 ~eiA~~la~~~~-~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-----V~~ 952 (1129)
+|+|..+++.|. +|+++.+... .++........ + ...+|++..+ +.++.+++ |++
T Consensus 286 ~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~~~-------------~---~~~GV~i~~~~~v~~i~~~~~~~~~v~~ 349 (457)
T PRK11749 286 MDAARTAKRLGAESVTIVYRRGREEMPASEEEVEH-------------A---KEEGVEFEWLAAPVEILGDEGRVTGVEF 349 (457)
T ss_pred HHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHH-------------H---HHCCCEEEecCCcEEEEecCCceEEEEE
Confidence 999999999987 8999977432 11111100000 0 0124555432 55554322 443
Q ss_pred c-------------------CCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc
Q psy12350 953 Q-------------------DGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013 (1129)
Q Consensus 953 ~-------------------dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~ 1013 (1129)
. +++++++|.||+|+|++++..++....++.+++.+...+......++.|+||++|++...
T Consensus 350 ~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~ 429 (457)
T PRK11749 350 VRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG 429 (457)
T ss_pred EEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC
Confidence 2 234689999999999999976665445666665554444443456689999999998755
Q ss_pred -chhHHHHHHHHHHHHHHc
Q psy12350 1014 -LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1014 -~~~~~~e~qa~~~a~~l~ 1031 (1129)
.....+..||+.+|..+.
T Consensus 430 ~~~~~~A~~~G~~aA~~I~ 448 (457)
T PRK11749 430 AATVVWAVGDGKDAAEAIH 448 (457)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 356778888888887653
No 127
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=99.69 E-value=2.2e-16 Score=190.62 Aligned_cols=265 Identities=15% Similarity=0.167 Sum_probs=163.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC----CCCCCCCCCCCccccccCcccc-----ccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT----EHIGCDQYGLPVHSSMYKSLKT-----NLP-- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~----~~~g~~~~g~p~~~~~y~~~~~-----~~~-- 808 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||++ .+||++... .+++... .. ...+...+.. +..
T Consensus 5 yDVvIIGgGpAGL~AA~~lar~g--~~V~liE~~-~~GG~~~~~~~i~~~pg~~~--~~-~~~l~~~l~~~~~~~gv~~~ 78 (555)
T TIGR03143 5 YDLIIIGGGPAGLSAGIYAGRAK--LDTLIIEKD-DFGGQITITSEVVNYPGILN--TT-GPELMQEMRQQAQDFGVKFL 78 (555)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCceEEeccccccCCCCcC--CC-HHHHHHHHHHHHHHcCCEEe
Confidence 57899999999999999999999 999999995 799987532 1222110 00 0000000000 000
Q ss_pred -ccccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 809 -KDLMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 809 -~~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
....... + +..... ...+.....++.+|+.|+.|++||.+.|.+..+|.+...+...+.+++|+|||||.+|+|
T Consensus 79 ~~~V~~i~~~~~~~~V~~~-~g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~~~~g~~VvVIGgG~~g~E 157 (555)
T TIGR03143 79 QAEVLDVDFDGDIKTIKTA-RGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAE 157 (555)
T ss_pred ccEEEEEEecCCEEEEEec-CCEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChhhcCCCEEEEECCCHHHHH
Confidence 0000000 0 000000 011222234555999999999999877777777776666656678999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EEe---cC
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VRF---QD 954 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~~---~d 954 (1129)
+|..|++.+++|+++.+.+.... ....... +. ...+|+++.+ |.++.+++ +.+ .+
T Consensus 158 ~A~~L~~~g~~Vtli~~~~~~~~-~~~~~~~-------------~~--~~~gV~i~~~~~V~~i~~~~~v~~v~~~~~~~ 221 (555)
T TIGR03143 158 EAVFLTRYASKVTVIVREPDFTC-AKLIAEK-------------VK--NHPKIEVKFNTELKEATGDDGLRYAKFVNNVT 221 (555)
T ss_pred HHHHHHccCCEEEEEEeCCcccc-CHHHHHH-------------HH--hCCCcEEEeCCEEEEEEcCCcEEEEEEEECCC
Confidence 99999999999999988653210 0000000 00 0125666543 77776543 222 35
Q ss_pred CcEe----eccE----EEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHH
Q psy12350 955 GSYE----QVDI----ILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVR 1024 (1129)
Q Consensus 955 G~~~----~~D~----VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~ 1024 (1129)
|+.. ++|. ||+|+|++|+..++.. ++.+++++...+.. .+.++.||||++|++... ..+..+..|++
T Consensus 222 G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l~~~--~l~l~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~ 298 (555)
T TIGR03143 222 GEITEYKAPKDAGTFGVFVFVGYAPSSELFKG--VVELDKRGYIPTNE-DMETNVPGVYAAGDLRPKELRQVVTAVADGA 298 (555)
T ss_pred CCEEEEeccccccceEEEEEeCCCCChhHHhh--hcccCCCCeEEeCC-ccccCCCCEEEceeccCCCcchheeHHhhHH
Confidence 7643 3666 9999999999887754 35566544333332 245589999999998532 23455677777
Q ss_pred HHHHHH
Q psy12350 1025 LFQQLM 1030 (1129)
Q Consensus 1025 ~~a~~l 1030 (1129)
.+|..+
T Consensus 299 ~Aa~~i 304 (555)
T TIGR03143 299 IAATSA 304 (555)
T ss_pred HHHHHH
Confidence 666654
No 128
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.69 E-value=3.3e-17 Score=187.67 Aligned_cols=288 Identities=18% Similarity=0.265 Sum_probs=192.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCC-CceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGS-GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~-~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+++++|||.|.+|..+...+++..+ -++|++|-..+++ .|+. ..+++.+.
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~----------------------nY~R--i~Ls~vl~----- 53 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRP----------------------NYNR--ILLSSVLA----- 53 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCc----------------------cccc--eeeccccC-----
Confidence 4789999999999999999988443 4689999776542 2331 11111110
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.--+.+++.-.-.+++++.++ +++.+.+|+.|++. ...| .........|| +||+|
T Consensus 54 --------~~~~~edi~l~~~dwy~~~~i--~L~~~~~v~~idr~-----~k~V-----~t~~g~~~~YD-----kLilA 108 (793)
T COG1251 54 --------GEKTAEDISLNRNDWYEENGI--TLYTGEKVIQIDRA-----NKVV-----TTDAGRTVSYD-----KLIIA 108 (793)
T ss_pred --------CCccHHHHhccchhhHHHcCc--EEEcCCeeEEeccC-----cceE-----EccCCcEeecc-----eeEEe
Confidence 001344555555778888887 89999999999873 2222 23445667899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc---
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT--- 244 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~--- 244 (1129)
|| |.|.+|++||.. .+|.+. . ++.+++.
T Consensus 109 TG--S~pfi~PiPG~~---~~~v~~---------------~-----------------------------R~i~D~~am~ 139 (793)
T COG1251 109 TG--SYPFILPIPGSD---LPGVFV---------------Y-----------------------------RTIDDVEAML 139 (793)
T ss_pred cC--ccccccCCCCCC---CCCeeE---------------E-----------------------------ecHHHHHHHH
Confidence 99 999999999842 222111 0 1111111
Q ss_pred c-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCC
Q psy12350 245 E-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPD 308 (1129)
Q Consensus 245 ~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~ 308 (1129)
. -+.++..++ ||||.-|+|.|..|.+.|-+|++++-.+.++...+.. ++.++..
T Consensus 140 ~~ar~~~~avV----------IGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~ 209 (793)
T COG1251 140 DCARNKKKAVV----------IGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKN 209 (793)
T ss_pred HHHhccCCcEE----------EccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccc
Confidence 0 112222222 6999999999999999999999999988776554322 4555655
Q ss_pred ceEEcCC----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc------
Q psy12350 309 IAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY------ 378 (1129)
Q Consensus 309 v~~~~~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~------ 378 (1129)
..++.+. ++.|+||+.+++|.||+|+|.+|+..+-. ..++.+++..+++.|.+ ++||++|.+|-..
T Consensus 210 t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela~-~aGlavnrGIvvnd~mq---TsdpdIYAvGEcae~~g~~ 285 (793)
T COG1251 210 TEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDELAK-EAGLAVNRGIVVNDYMQ---TSDPDIYAVGECAEHRGKV 285 (793)
T ss_pred hhhhhcCcceeeEeecCCCcccceeEEEecccccccHhHH-hcCcCcCCCeeeccccc---ccCCCeeehhhHHHhcCcc
Confidence 5555433 48999999999999999999999988865 46688877556666666 5799999998552
Q ss_pred ---cccccccccceeeehhhcccc----cccc-----cccccccceecCC
Q psy12350 379 ---RYPFLHESCGIKVVNKNVQPL----YKHL-----INIEHPSMCIIGI 416 (1129)
Q Consensus 379 ---~~~~~~~~~~~~~~a~~~~~~----~~~~-----~~~~~~~~~~~~~ 416 (1129)
.+|..+ |++.+|..+.+. |.+. ||..+.++.|+|-
T Consensus 286 yGLVaP~ye---q~~v~a~hl~~~~~~~y~gsv~stkLKv~Gvdl~S~GD 332 (793)
T COG1251 286 YGLVAPLYE---QAKVLADHLCGGEAEAYEGSVTSTKLKVSGVDVFSAGD 332 (793)
T ss_pred ceehhHHHH---HHHHHHHHhccCcccccccccchhhhcccccceeeccc
Confidence 345554 666677766654 3222 4444555555543
No 129
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=99.69 E-value=5.6e-17 Score=189.99 Aligned_cols=186 Identities=17% Similarity=0.195 Sum_probs=129.6
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCC--------------C--------CCCCCCeEEEEcCCccHHHHHHH
Q psy12350 830 AKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT--------------P--------EPFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 830 ~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~--------------~--------~~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
..-|+++|+.|..|.+||.++. +++.+.+.+ . ...+.++|+|||+|.+|+|+|.+
T Consensus 115 D~LViAtGs~~~~~~ipG~~e~---~~~~~~~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~ 191 (424)
T PTZ00318 115 DKLVVAHGARPNTFNIPGVEER---AFFLKEVNHARGIRKRIVQCIERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAE 191 (424)
T ss_pred CEEEECCCcccCCCCCCCHHHc---CCCCCCHHHHHHHHHHHHHHHHHhcCCCCChHHHhccCEEEEECCCHHHHHHHHH
Confidence 3445669999999999998642 111111110 0 01123599999999999999999
Q ss_pred HHh--------------cCCEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcE
Q psy12350 888 IAT--------------TGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGV 950 (1129)
Q Consensus 888 la~--------------~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V 950 (1129)
|++ .+.+|+++++++..++.. +.....+.+.+. ..+|+++.+ |.+++++.|
T Consensus 192 l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~L~------------~~gV~v~~~~~v~~v~~~~v 259 (424)
T PTZ00318 192 LADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRRLR------------RLGVDIRTKTAVKEVLDKEV 259 (424)
T ss_pred HHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHHHH------------HCCCEEEeCCeEEEEeCCEE
Confidence 986 368999999876554322 122222221111 126777654 999999999
Q ss_pred EecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc------chhHHHHHHHH
Q psy12350 951 RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------LLFNLFDLQVR 1024 (1129)
Q Consensus 951 ~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------~~~~~~e~qa~ 1024 (1129)
+++||+++++|.||||+|.+++ +++.. +++++++++...+...+..+++||||++|++... .....+..||+
T Consensus 260 ~~~~g~~i~~d~vi~~~G~~~~-~~~~~-~~l~~~~~G~I~Vd~~l~~~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~ 337 (424)
T PTZ00318 260 VLKDGEVIPTGLVVWSTGVGPG-PLTKQ-LKVDKTSRGRISVDDHLRVKPIPNVFALGDCAANEERPLPTLAQVASQQGV 337 (424)
T ss_pred EECCCCEEEccEEEEccCCCCc-chhhh-cCCcccCCCcEEeCCCcccCCCCCEEEEeccccCCCCCCCCchHHHHHHHH
Confidence 9999999999999999999997 66654 6666665554455555555789999999998752 24578899999
Q ss_pred HHHHHHcC
Q psy12350 1025 LFQQLMQG 1032 (1129)
Q Consensus 1025 ~~a~~l~g 1032 (1129)
++|++|.+
T Consensus 338 ~~A~ni~~ 345 (424)
T PTZ00318 338 YLAKEFNN 345 (424)
T ss_pred HHHHHHHH
Confidence 99988764
No 130
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=99.68 E-value=1.6e-16 Score=195.28 Aligned_cols=266 Identities=16% Similarity=0.152 Sum_probs=157.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-cCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGY 817 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~ 817 (1129)
..+++|||+|++|+++|..|++.| ++|+|||+++.+||.+.+. .|+ +.+|. ...........+.-..+ .+.
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G--~~VtV~Ek~~~~GG~lr~~-IP~---~Rlp~--evL~~die~l~~~GVe~~~gt 610 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAG--HPVTVFEREENAGGVVKNI-IPQ---FRIPA--ELIQHDIEFVKAHGVKFEFGC 610 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcC--CeEEEEecccccCcceeee-ccc---ccccH--HHHHHHHHHHHHcCCEEEeCc
Confidence 346899999999999999999999 9999999999999998642 111 01110 00000000000000000 000
Q ss_pred CC--CCCCCCCCCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccCCCC------CCCCCCeEEEEcCCccHHHHHHHH
Q psy12350 818 GH--KGNADKSYIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDYRTP------EPFAGKQAVVVGSGQSGLDITLDI 888 (1129)
Q Consensus 818 ~~--~~~~~~~~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~~~~------~~~~gk~VvVVG~G~Sg~eiA~~l 888 (1129)
.. ..+..........++++|+. |+.+++||.+. .++++.++... ....||+|+|||||++|+|+|..+
T Consensus 611 ~Vdi~le~L~~~gYDaVILATGA~~~~~l~IpG~~~---gV~saldfL~~~k~~~~~~~~GKrVVVIGGGnVAmD~Ar~a 687 (1019)
T PRK09853 611 SPDLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGNQ---NVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAA 687 (1019)
T ss_pred eeEEEhhhheeccCCEEEECcCCCCCCCCCCCCccC---CceehHHHHHHHhhhcccccCCCEEEEECCChHHHHHHHHH
Confidence 00 00000011123345558886 45667888652 34444333211 123589999999999999999998
Q ss_pred Hhc-C-CEEEEEecCCC-Cccchh-hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe----------------
Q psy12350 889 ATT-G-KQAVVVGSGQS-GLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT---------------- 946 (1129)
Q Consensus 889 a~~-~-~~V~vv~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~---------------- 946 (1129)
.+. + ++|+++.+... .++... .+.... ..+|++... +.++.
T Consensus 688 ~RlgGakeVTLVyRr~~~~MPA~~eEle~Al-----------------eeGVe~~~~~~p~~I~~dG~l~~~~~~lg~~d 750 (1019)
T PRK09853 688 LRVPGVEKVTVVYRRTKQEMPAWREEYEEAL-----------------EDGVEFKELLNPESFDADGTLTCRVMKLGEPD 750 (1019)
T ss_pred HhcCCCceEEEEEccCcccccccHHHHHHHH-----------------HcCCEEEeCCceEEEEcCCcEEEEEEEeeccc
Confidence 887 4 58999977542 111111 010000 012222111 12221
Q ss_pred CCc----EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHH
Q psy12350 947 PTG----VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDL 1021 (1129)
Q Consensus 947 ~~~----V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~ 1021 (1129)
.++ +...++.++++|.||+|+|.+++.+++.. .|+.+++.+...+ ...+.++.|+||++|++..+ .....+..
T Consensus 751 ~~Gr~~~v~tg~~~~I~aD~VIvAIG~~Pntelle~-~GL~ld~~G~I~V-DetlqTs~pgVFAaGD~a~Gp~tvv~Ai~ 828 (1019)
T PRK09853 751 ESGRRRPVETGETVTLEADTVITAIGEQVDTELLKA-NGIPLDKKGWPVV-DANGETSLTNVYMIGDVQRGPSTIVAAIA 828 (1019)
T ss_pred CCCceEEeeCCCeEEEEeCEEEECCCCcCChhHHHh-cCccccCCCCEEe-CCCcccCCCCEEEEeccccCchHHHHHHH
Confidence 111 22334567899999999999999888854 6777765544333 34456689999999998754 46688999
Q ss_pred HHHHHHHHHcCCC
Q psy12350 1022 QVRLFQQLMQGHI 1034 (1129)
Q Consensus 1022 qa~~~a~~l~g~~ 1034 (1129)
||+.+|+.+.+..
T Consensus 829 qGr~AA~nI~~~~ 841 (1019)
T PRK09853 829 DARRAADAILSRE 841 (1019)
T ss_pred HHHHHHHHHhhhc
Confidence 9999999998754
No 131
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=99.68 E-value=1.2e-16 Score=191.45 Aligned_cols=268 Identities=15% Similarity=0.120 Sum_probs=160.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCc-c-ccccCccc-------cc--c
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPV-H-SSMYKSLK-------TN--L 807 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~-~-~~~y~~~~-------~~--~ 807 (1129)
..+++|||+|++|+++|..|.+.| ++++|+|. .+||+|........ ..+.+. . ..+...+. .+ .
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G--~~v~li~~--~~GG~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~l~~~gv~i~~ 286 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKG--LRTAMVAE--RIGGQVKDTVGIEN-LISVPYTTGSQLAANLEEHIKQYPIDLME 286 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEec--CCCCccccCcCccc-ccccCCCCHHHHHHHHHHHHHHhCCeEEc
Confidence 357899999999999999999999 99999975 58998863210000 000000 0 00000000 00 0
Q ss_pred cccccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 808 PKDLMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 808 ~~~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
........ + +.........+.....++.+|+.|+.|++||.+.|.+..++.....+.....+|+|+|||+|.+|+|
T Consensus 287 ~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~VvViGgG~~g~E 366 (515)
T TIGR03140 287 NQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIE 366 (515)
T ss_pred CCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChhhcCCCEEEEECCcHHHHH
Confidence 00000000 0 0000000112223334455999999999999766766666655544444457899999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCC-
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDG- 955 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG- 955 (1129)
+|..|+..+++||++++.+.... ... +. ..+.. ..+|++..+ +.++.++ +|++.++
T Consensus 367 ~A~~L~~~g~~Vtli~~~~~l~~-~~~---------l~----~~l~~--~~gV~i~~~~~v~~i~~~~~~v~~v~~~~~~ 430 (515)
T TIGR03140 367 AAIDLAGIVRHVTVLEFADELKA-DKV---------LQ----DKLKS--LPNVDILTSAQTTEIVGDGDKVTGIRYQDRN 430 (515)
T ss_pred HHHHHHhcCcEEEEEEeCCcCCh-hHH---------HH----HHHhc--CCCCEEEECCeeEEEEcCCCEEEEEEEEECC
Confidence 99999999999999987543211 000 00 00100 125666544 7777654 3666543
Q ss_pred ----cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHHHH
Q psy12350 956 ----SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 956 ----~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a~~ 1029 (1129)
+++++|.||+|+|++|+.+++.. . +++++++...+.. .+.++.||||++|++.... ....+..|+..+|..
T Consensus 431 ~~~~~~i~~D~vi~a~G~~Pn~~~l~~-~-~~~~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~ 507 (515)
T TIGR03140 431 SGEEKQLDLDGVFVQIGLVPNTEWLKD-A-VELNRRGEIVIDE-RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALS 507 (515)
T ss_pred CCcEEEEEcCEEEEEeCCcCCchHHhh-h-cccCCCCeEEECC-CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHH
Confidence 35799999999999999888865 3 5555444332322 2345899999999987542 234555556655554
Q ss_pred H
Q psy12350 1030 M 1030 (1129)
Q Consensus 1030 l 1030 (1129)
+
T Consensus 508 i 508 (515)
T TIGR03140 508 A 508 (515)
T ss_pred H
Confidence 4
No 132
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.68 E-value=3e-16 Score=192.44 Aligned_cols=284 Identities=14% Similarity=0.196 Sum_probs=165.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||+|.|.. +.|
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gi------------------------------p~~ 356 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGI------------------------------PPF 356 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccC------------------------------Ccc
Confidence 35899999999999999999999 6689999999999999998511 001
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. .+ .++.+...+....+|+ .++++++|..- +++.+ ....|| +|++|
T Consensus 357 ~---------l~-~~~~~~~~~~~~~~Gv--~~~~~~~v~~~-----------~~~~~------l~~~~D-----aV~la 402 (639)
T PRK12809 357 K---------LD-KTVLSQRREIFTAMGI--DFHLNCEIGRD-----------ITFSD------LTSEYD-----AVFIG 402 (639)
T ss_pred c---------CC-HHHHHHHHHHHHHCCe--EEEcCCccCCc-----------CCHHH------HHhcCC-----EEEEe
Confidence 0 01 2445555566677776 78888876310 00100 123489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||... +..+.+||.. ..| .+.. .|+.... +..... .....+.
T Consensus 403 tGa~~-~~~~~i~g~~---~~g---------------v~~a~~~l~~~~---------------~~~~~~-~~~~~~~-- 445 (639)
T PRK12809 403 VGTYG-MMRADLPHED---APG---------------VIQALPFLTAHT---------------RQLMGL-PESEEYP-- 445 (639)
T ss_pred CCCCC-CCCCCCCCCc---cCC---------------cEeHHHHHHHHH---------------HhhccC-ccccccc--
Confidence 99532 3345565521 111 1110 0110000 000000 0000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCcc-ccc---------CCCCeEEcCCceEEcC-
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHVK-KLR---------FPNNVVKKPDIAELTP- 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~~-~~~---------~~~~i~~~~~v~~~~~- 314 (1129)
.....||+|+| +|+|++|+|.|..+.+.| ++||+++|++... +.. ..-++.....++++.+
T Consensus 446 ---~~~~~gk~vvV----iGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a~~eGv~~~~~~~~~~i~~~ 518 (639)
T PRK12809 446 ---LTDVEGKRVVV----LGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACD 518 (639)
T ss_pred ---cccCCCCeEEE----ECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHHHcCCeEEeccCCEEEEEC
Confidence 00112444444 899999999998877776 6899999876431 110 0114555666777742
Q ss_pred -Cc----eEE---c------CC---------C--EeecCEEEEccccccc-CCCCCCCCCeEeecCcccc--cc-ccccc
Q psy12350 315 -TG----VRF---Q------DG---------S--YEQVDIILYCTGYTYR-YPFLHESCGIKVVNKNVQP--LY-KHLIN 365 (1129)
Q Consensus 315 -~~----v~~---~------dg---------~--~~~~D~VI~atG~~~~-~~~l~~~~~~~~~~~~~~~--l~-~~~~~ 365 (1129)
++ |.+ . +| + ++++|.||+|+|++++ ..++. +.++.++.+..+. -+ ...+-
T Consensus 519 ~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~-~~gl~~~~~G~i~vd~~~~~~~~ 597 (639)
T PRK12809 519 EDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQ-GSGIKLDKWGLIQTGDVGYLPTQ 597 (639)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCcccccc-ccCcccCCCCCEEeCCCcccCcc
Confidence 22 222 1 22 2 5799999999999986 45665 4556555433221 11 11233
Q ss_pred CCCCCeEEeccccccc-c-cccccceeeehhhccccccc
Q psy12350 366 IEHPSMCIIGYTYRYP-F-LHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 366 ~~~p~l~~~G~~~~~~-~-~~~~~~~~~~a~~~~~~~~~ 402 (1129)
++.|++|..|.....+ + ..+..+|+.+|+.+...+.+
T Consensus 598 Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~~~l~~ 636 (639)
T PRK12809 598 THLKKVFAGGDAVHGADLVVTAMAAGRQAARDMLTLFDT 636 (639)
T ss_pred cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence 6789999999986432 1 33447888888877766544
No 133
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.67 E-value=2.9e-16 Score=190.54 Aligned_cols=273 Identities=16% Similarity=0.217 Sum_probs=165.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+||||||+||++|..|++ .|++|+|||+.+.+||.+.+. ++.|
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~g------------------------------ip~~ 183 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYG------------------------------IPAY 183 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeec------------------------------CCCc
Confidence 34799999999999999999999 568999999999999998841 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceee-eeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNV-QPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.+ + .++.+...+.+.++|+ .+++++.+ ..+... . ....|| +||+
T Consensus 184 ~~---------~-~~~~~~~l~~~~~~Gv--~~~~~~~~~~~~~~~---------------~---~~~~~D-----~Vi~ 228 (564)
T PRK12771 184 RL---------P-REVLDAEIQRILDLGV--EVRLGVRVGEDITLE---------------Q---LEGEFD-----AVFV 228 (564)
T ss_pred cC---------C-HHHHHHHHHHHHHCCC--EEEeCCEECCcCCHH---------------H---HHhhCC-----EEEE
Confidence 11 1 2334444455667776 67777766 322110 0 012388 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccc-hhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSE-KYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
|||... +..+.+++.. ..| .... .++ ......
T Consensus 229 AtG~~~-~~~~~i~g~~---~~g---------------v~~~~~~l--------------------------~~~~~~-- 261 (564)
T PRK12771 229 AIGAQL-GKRLPIPGED---AAG---------------VLDAVDFL--------------------------RAVGEG-- 261 (564)
T ss_pred eeCCCC-CCcCCCCCCc---cCC---------------cEEHHHHH--------------------------HHhhcc--
Confidence 999432 2223344311 111 1000 000 000000
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCcc-cc---------cCCCCeEEcCCceEEcC
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHVK-KL---------RFPNNVVKKPDIAELTP 314 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~~-~~---------~~~~~i~~~~~v~~~~~ 314 (1129)
. ....+++|+| +|+|.+|+|.+..+.+.+ ++|++++|.+... +. ...-++.....+.++.+
T Consensus 262 ---~-~~~~gk~v~V----iGgg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~a~~~GVki~~~~~~~~i~~ 333 (564)
T PRK12771 262 ---E-PPFLGKRVVV----IGGGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEEALREGVEINWLRTPVEIEG 333 (564)
T ss_pred ---C-CcCCCCCEEE----ECChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHHHHHHcCCEEEecCCcEEEEc
Confidence 0 0112344444 899999999999888877 7899999875321 10 01114555666777753
Q ss_pred C--c---e---EE------c-------CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCe
Q psy12350 315 T--G---V---RF------Q-------DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 315 ~--~---v---~~------~-------dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l 371 (1129)
+ + + .+ . +| .++++|.||+|+|++++.+++....++. ++++.+......+.++.|++
T Consensus 334 ~~~~~~~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~V 412 (564)
T PRK12771 334 DENGATGLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGV 412 (564)
T ss_pred CCCCEEEEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCE
Confidence 3 1 1 11 1 22 2579999999999999988887434444 33443333333445678999
Q ss_pred EEeccccccc--ccccccceeeehhhcccccccc
Q psy12350 372 CIIGYTYRYP--FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 372 ~~~G~~~~~~--~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
|.+|.....| ...+..||+.+|.++...+.+.
T Consensus 413 fa~GD~~~g~~~v~~Av~~G~~aA~~i~~~L~g~ 446 (564)
T PRK12771 413 FAGGDMVPGPRTVTTAIGHGKKAARNIDAFLGGE 446 (564)
T ss_pred EeccCcCCCchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999876432 2344588888888887776654
No 134
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.66 E-value=2.1e-16 Score=202.08 Aligned_cols=277 Identities=13% Similarity=0.096 Sum_probs=161.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||||||+||.+|++ .|++|+|+|+++.+||.+.+... ...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~---------------------------~~~--- 210 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAE---------------------------TID--- 210 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeecccc---------------------------ccC---
Confidence 4789999999999999999999 67999999999999999874110 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecc-----------ccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGI-----------PRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~d 157 (1129)
-.+..++.+.+.+..+.++ ...++.+++|..+... .....+... ..+....+.+|
T Consensus 211 --------g~~~~~~~~~~~~~l~~~~-~v~v~~~t~V~~i~~~-----~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~ 276 (985)
T TIGR01372 211 --------GKPAADWAAATVAELTAMP-EVTLLPRTTAFGYYDH-----NTVGALERVTDHLDAPPKGVPRERLWRIRAK 276 (985)
T ss_pred --------CccHHHHHHHHHHHHhcCC-CcEEEcCCEEEEEecC-----CeEEEEEEeeeccccccCCccccceEEEEcC
Confidence 0011233222333333332 1277888888776531 000001000 00111245677
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|++||.. .+|. ..... .....
T Consensus 277 -----~VILATG--a~~r~~pipG~~---~pgV---------------~~~~~----------------------~~~~l 309 (985)
T TIGR01372 277 -----RVVLATG--AHERPLVFANND---RPGV---------------MLAGA----------------------ARTYL 309 (985)
T ss_pred -----EEEEcCC--CCCcCCCCCCCC---CCCc---------------EEchH----------------------HHHHH
Confidence 9999999 778888887732 1121 11000 00000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCCcccc------cCCCCeEEcCCce
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEHVKKL------RFPNNVVKKPDIA 310 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~~~~~------~~~~~i~~~~~v~ 310 (1129)
..... .. |++|+| +|+|++|+|+|..|++.| +.|+++++.+.+.+. ...-++..+..|+
T Consensus 310 ~~~~~---~~-------gk~VvV----iG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~~l~~~L~~~GV~i~~~~~v~ 375 (985)
T TIGR01372 310 NRYGV---AP-------GKRIVV----ATNNDSAYRAAADLLAAGIAVVAIIDARADVSPEARAEARELGIEVLTGHVVA 375 (985)
T ss_pred HhhCc---CC-------CCeEEE----ECCCHHHHHHHHHHHHcCCceEEEEccCcchhHHHHHHHHHcCCEEEcCCeEE
Confidence 00000 11 333344 899999999999999999 568898876644221 1112455567788
Q ss_pred EEcCC----ceEEc----CCCEeecCEEEEcccccccCCCCCCC-CCeEeecCcccccccccccCCCCCeEEecccccc-
Q psy12350 311 ELTPT----GVRFQ----DGSYEQVDIILYCTGYTYRYPFLHES-CGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY- 380 (1129)
Q Consensus 311 ~~~~~----~v~~~----dg~~~~~D~VI~atG~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~- 380 (1129)
++.++ +|.+. +++++++|.|++++|++++..++... +.+..++.. ..+. -.++.|++|.+|.....
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~--~~~~--~~t~v~gVyaaGD~~g~~ 451 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAI--AAFL--PGDAVQGCILAGAANGLF 451 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHhcCCCeeecccc--Ccee--cCCCCCCeEEeeccCCcc
Confidence 88764 35665 45578999999999999999886521 223333211 1110 01457899999976532
Q ss_pred cccccccceeeehhhc
Q psy12350 381 PFLHESCGIKVVNKNV 396 (1129)
Q Consensus 381 ~~~~~~~~~~~~a~~~ 396 (1129)
.......+++.+|..+
T Consensus 452 ~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 452 GLAAALADGAAAGAAA 467 (985)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 2223335555555444
No 135
>PRK13984 putative oxidoreductase; Provisional
Probab=99.66 E-value=3.8e-16 Score=191.58 Aligned_cols=275 Identities=16% Similarity=0.208 Sum_probs=155.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+.++|+|||||+||++||..|++ .|++|+|||+.+.+||.+.+. ++.
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~------------------------------i~~- 328 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYG------------------------------IPS- 328 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeec------------------------------CCc-
Confidence 45799999999999999999999 679999999999999988741 000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+....++.+...+..+++++ .++++++|..-. .. . .....|| +||+|
T Consensus 329 ---------~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~~~-----------~~---~---~~~~~yD-----~vilA 375 (604)
T PRK13984 329 ---------YRLPDEALDKDIAFIEALGV--KIHLNTRVGKDI-----------PL---E---ELREKHD-----AVFLS 375 (604)
T ss_pred ---------ccCCHHHHHHHHHHHHHCCc--EEECCCEeCCcC-----------CH---H---HHHhcCC-----EEEEE
Confidence 00112344444455666776 788888773100 00 0 0123599 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||. ..|+.+++||.... + .+. ..++..+. ..... +.
T Consensus 376 tGa-~~~r~l~i~G~~~~---g---------------v~~a~~~l~~~~-------------------~~~~~-~~---- 412 (604)
T PRK13984 376 TGF-TLGRSTRIPGTDHP---D---------------VIQALPLLREIR-------------------DYLRG-EG---- 412 (604)
T ss_pred cCc-CCCccCCCCCcCCc---C---------------eEeHHHHHHHHH-------------------hhhcc-CC----
Confidence 993 23567777773211 1 000 00100000 00000 00
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccc------cEEEEccccC--CcccccC-------CC--CeEEcCCc
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA------TTVFLSHHSE--HVKKLRF-------PN--NVVKKPDI 309 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~------~~V~lv~r~~--~~~~~~~-------~~--~i~~~~~v 309 (1129)
. ..-++++|+| ||||++|+|+|..+++.+ .+|+++.... ..++... .. ++.....+
T Consensus 413 --~-~~~~~k~VvV----IGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~~~GV~i~~~~~~ 485 (604)
T PRK13984 413 --P-KPKIPRSLVV----IGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGLEEGVVIYPGWGP 485 (604)
T ss_pred --C-cCCCCCcEEE----ECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHHHcCCEEEeCCCC
Confidence 0 0001334444 899999999999998774 3788874321 1111100 11 23334445
Q ss_pred eEEcC-C----ceEEc--------CC-----------CEeecCEEEEcccccccCCCCCCCC--CeEeecCccccccccc
Q psy12350 310 AELTP-T----GVRFQ--------DG-----------SYEQVDIILYCTGYTYRYPFLHESC--GIKVVNKNVQPLYKHL 363 (1129)
Q Consensus 310 ~~~~~-~----~v~~~--------dg-----------~~~~~D~VI~atG~~~~~~~l~~~~--~~~~~~~~~~~l~~~~ 363 (1129)
.++.+ + +|.+. +| .++++|.||+|+|++++..+|...+ ++..+ +..+....+
T Consensus 486 ~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~-~G~i~vd~~- 563 (604)
T PRK13984 486 MEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFV-RGRILTNEY- 563 (604)
T ss_pred EEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCcccc-CCeEEeCCC-
Confidence 55532 1 12221 12 3579999999999999988876432 23322 121111111
Q ss_pred ccCCCCCeEEecccccc-cccccccceeeehhhccccc
Q psy12350 364 INIEHPSMCIIGYTYRY-PFLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 364 ~~~~~p~l~~~G~~~~~-~~~~~~~~~~~~a~~~~~~~ 400 (1129)
+-++.|++|.+|..... .+..+..+|+.+|..+...+
T Consensus 564 ~~Ts~~gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~~~L 601 (604)
T PRK13984 564 GQTSIPWLFAGGDIVHGPDIIHGVADGYWAAEGIDMYL 601 (604)
T ss_pred CccCCCCEEEecCcCCchHHHHHHHHHHHHHHHHHHHh
Confidence 23578999999988643 23344577777777666544
No 136
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=99.65 E-value=9.2e-16 Score=189.90 Aligned_cols=264 Identities=17% Similarity=0.132 Sum_probs=155.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL----- 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~----- 814 (1129)
.+++|||+||+|++||..|++.| ++|+|||+++.+||...+. .|. +.+|.. ............-..+
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G--~~VTV~Ek~~~lGG~l~~~-IP~---~rlp~e--~l~~~ie~l~~~GVe~~~g~~ 609 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAG--HPVTVFEKKEKPGGVVKNI-IPE---FRISAE--SIQKDIELVKFHGVEFKYGCS 609 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CeEEEEecccccCceeeec-ccc---cCCCHH--HHHHHHHHHHhcCcEEEEecc
Confidence 47899999999999999999999 9999999999999987542 111 111100 0000000000000000
Q ss_pred cCCCCCCCCCCCCCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccCC----C--CCCCCCCeEEEEcCCccHHHHHHH
Q psy12350 815 CGYGHKGNADKSYIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDYR----T--PEPFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 815 ~~~~~~~~~~~~~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~~----~--~~~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
.+..... .........++++|+. ++.+.++|.+. .++.+.++. + .....||+|+|||||++|+|+|..
T Consensus 610 ~d~~ve~--l~~~gYDaVIIATGA~~~~~l~I~G~~~---~v~~avefL~~~~~~~~~~~~GK~VVVIGGGnvAmD~Ar~ 684 (1012)
T TIGR03315 610 PDLTVAE--LKNQGYKYVILAIGAWKHGPLRLEGGGE---RVLKSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARA 684 (1012)
T ss_pred cceEhhh--hhcccccEEEECCCCCCCCCCCcCCCCc---ceeeHHHHHHHhhccccccccCCeEEEECCCHHHHHHHHH
Confidence 0000000 0011122344558876 44556777532 344433322 1 112359999999999999999999
Q ss_pred HHhc-C-CEEEEEecCCC-Cccchh-hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe---------------
Q psy12350 888 IATT-G-KQAVVVGSGQS-GLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT--------------- 946 (1129)
Q Consensus 888 la~~-~-~~V~vv~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~--------------- 946 (1129)
+.+. | ++|+++.+... .++... .+.... ..+|++... +.+++
T Consensus 685 a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al-----------------eeGVe~~~~~~p~~I~~g~l~v~~~~l~~~d 747 (1012)
T TIGR03315 685 ALRVPGVEKVTVVYRRTKRYMPASREELEEAL-----------------EDGVDFKELLSPESFEDGTLTCEVMKLGEPD 747 (1012)
T ss_pred HHHhCCCceEEEEEccCccccccCHHHHHHHH-----------------HcCCEEEeCCceEEEECCeEEEEEEEeeccc
Confidence 8876 6 58999977542 111111 111100 012222111 11221
Q ss_pred CCc--EEecCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHH
Q psy12350 947 PTG--VRFQDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDL 1021 (1129)
Q Consensus 947 ~~~--V~~~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~ 1021 (1129)
.++ ....+|+ ++++|.||+|+|.+++..++.. .|+.+++.+...+......++.|+||++|++..+ .....+..
T Consensus 748 ~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~-~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~GP~tVv~AIa 826 (1012)
T TIGR03315 748 ASGRRRPVGTGETVDLPADTVIAAVGEQVDTDLLQK-NGIPLDEYGWPVVNQATGETNITNVFVIGDANRGPATIVEAIA 826 (1012)
T ss_pred CCCceeeecCCCeEEEEeCEEEEecCCcCChHHHHh-cCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCCccHHHHHHH
Confidence 111 1223454 5799999999999999887754 6777766554444444456789999999998744 46688999
Q ss_pred HHHHHHHHHcCCC
Q psy12350 1022 QVRLFQQLMQGHI 1034 (1129)
Q Consensus 1022 qa~~~a~~l~g~~ 1034 (1129)
||+.+|..+.++.
T Consensus 827 qGr~AA~nIl~~~ 839 (1012)
T TIGR03315 827 DGRKAANAILSRE 839 (1012)
T ss_pred HHHHHHHHHhccc
Confidence 9999999998654
No 137
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.64 E-value=4.1e-16 Score=183.89 Aligned_cols=252 Identities=17% Similarity=0.241 Sum_probs=151.5
Q ss_pred HHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCCCCCCCCCCCHHH
Q psy12350 23 TATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAAND 102 (1129)
Q Consensus 23 ~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~ 102 (1129)
+||++|++.+++++|+|||+++..+ |.+ ..++....+ .....++
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~----~~~--------------------~~l~~~~~g------------~~~~~~~ 44 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS----FAN--------------------CGLPYVIGG------------VIDDRNK 44 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee----EEc--------------------CCCCeEecc------------ccCCHHH
Confidence 4789998877789999999987532 100 001100000 0111122
Q ss_pred HHHH-HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE--ecceeeeEEEEecccCCCCCcccc
Q psy12350 103 VLEY-LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL--FDLQVRFFLQLMQGHVTLPSKAEM 179 (1129)
Q Consensus 103 ~~~y-l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~--~d~~~~~~lvvAtG~~~~p~~p~i 179 (1129)
+..| .+.+.+++++ .++++++|+.+++ +.+.+.+.+. +...... || +|||||| +.|+.|++
T Consensus 45 ~~~~~~~~~~~~~gv--~~~~~~~V~~id~-----~~~~v~~~~~--~~~~~~~~~yd-----~lIiATG--~~p~~~~i 108 (427)
T TIGR03385 45 LLAYTPEVFIKKRGI--DVKTNHEVIEVND-----ERQTVVVRNN--KTNETYEESYD-----YLILSPG--ASPIVPNI 108 (427)
T ss_pred cccCCHHHHHHhcCC--eEEecCEEEEEEC-----CCCEEEEEEC--CCCCEEecCCC-----EEEECCC--CCCCCCCC
Confidence 2333 2345567776 7888999999875 4455555432 1223345 99 9999999 78888888
Q ss_pred ccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccccceeEeeceee
Q psy12350 180 LADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAF 259 (1129)
Q Consensus 180 ~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~ 259 (1129)
||..... .+.... ...+......+.....++++|
T Consensus 109 ~G~~~~~------------------v~~~~~----------------------~~~~~~~~~~l~~~~~~~vvV------ 142 (427)
T TIGR03385 109 EGINLDI------------------VFTLRN----------------------LEDTDAIKQYIDKNKVENVVI------ 142 (427)
T ss_pred CCcCCCC------------------EEEECC----------------------HHHHHHHHHHHhhcCCCeEEE------
Confidence 7732100 000000 000000000010011233443
Q ss_pred eecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEEcCCc--eEEcCC
Q psy12350 260 VRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAELTPTG--VRFQDG 322 (1129)
Q Consensus 260 v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~~~~~--v~~~dg 322 (1129)
||||++|+|+|..|++.+.+|+++++.+.++...++ -++..+..|.++++++ +++.+|
T Consensus 143 -----iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~v~~~~g 217 (427)
T TIGR03385 143 -----IGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEERVKVFTSG 217 (427)
T ss_pred -----ECCCHHHHHHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCCEEEEcCC
Confidence 899999999999999999999999998866321111 1455577788887654 377899
Q ss_pred CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 323 SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 323 ~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
+++++|.||+|+|.+++.+++. ..++..+++..+....++ -++.|++|.+|....
T Consensus 218 ~~i~~D~vi~a~G~~p~~~~l~-~~gl~~~~~G~i~vd~~~-~t~~~~Vya~GD~~~ 272 (427)
T TIGR03385 218 GVYQADMVILATGIKPNSELAK-DSGLKLGETGAIWVNEKF-QTSVPNIYAAGDVAE 272 (427)
T ss_pred CEEEeCEEEECCCccCCHHHHH-hcCcccCCCCCEEECCCc-EeCCCCEEEeeeeEE
Confidence 9999999999999999988876 344555443333322222 246788999887753
No 138
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=99.64 E-value=8.5e-16 Score=192.51 Aligned_cols=260 Identities=19% Similarity=0.236 Sum_probs=154.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+.+.+||.+.+ |+|... .-..........+..+ ...+
T Consensus 432 ~~V~IIGaGpAGl~aA~~l~~~G--~~V~v~e~~~~~GG~l~~---------gip~~r-lp~~~~~~~~~~l~~~-gv~~ 498 (752)
T PRK12778 432 KKVAVIGSGPAGLSFAGDLAKRG--YDVTVFEALHEIGGVLKY---------GIPEFR-LPKKIVDVEIENLKKL-GVKF 498 (752)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeee---------cCCCCC-CCHHHHHHHHHHHHHC-CCEE
Confidence 36799999999999999999999 999999999999999875 333110 0000000000000000 0111
Q ss_pred CCC-----C-----CCCCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC-------------CCCCCCCeEEEE
Q psy12350 820 KGN-----A-----DKSYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT-------------PEPFAGKQAVVV 875 (1129)
Q Consensus 820 ~~~-----~-----~~~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~-------------~~~~~gk~VvVV 875 (1129)
..+ . .........++.+|+ .|+.|++||.+. ..++++.++.. .....||+|+||
T Consensus 499 ~~~~~v~~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~--~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVI 576 (752)
T PRK12778 499 ETDVIVGKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENS--NGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVV 576 (752)
T ss_pred ECCCEECCcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCC--CCcEEHHHHHHHHhhcccccccccCcccCCCcEEEE
Confidence 000 0 000111223344887 699999999763 23455443321 112468999999
Q ss_pred cCCccHHHHHHHHHhcCCE-EEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeC--Cc
Q psy12350 876 GSGQSGLDITLDIATTGKQ-AVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTP--TG 949 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~-V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~--~~ 949 (1129)
|||++|+|+|..+.+.|++ ||++.+... .++........++ ..+|++.. .+.++.. ++
T Consensus 577 GgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~~~~~----------------~~GV~i~~~~~~~~i~~~~~g 640 (752)
T PRK12778 577 GGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEVKHAK----------------EEGIEFLTLHNPIEYLADEKG 640 (752)
T ss_pred CCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH----------------HcCCEEEecCcceEEEECCCC
Confidence 9999999999999999887 999977532 1111100000000 01222221 1222210 01
Q ss_pred ----EEe------------------cCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcE
Q psy12350 950 ----VRF------------------QDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMF 1005 (1129)
Q Consensus 950 ----V~~------------------~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~ 1005 (1129)
|++ ..|+ ++++|.||+|+|++++..++....|+.+++.+...+.... .++.|+||
T Consensus 641 ~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~-~Ts~~gVf 719 (752)
T PRK12778 641 WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEM-QSSIPGIY 719 (752)
T ss_pred EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCCCC-CCCCCCEE
Confidence 111 1222 5799999999999999766554346777655443333333 67899999
Q ss_pred EEcccccc-chhHHHHHHHHHHHHHHc
Q psy12350 1006 ILGVPRHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1006 ~iG~~~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
++|++..+ .....+..|++.+|..+.
T Consensus 720 A~GD~~~g~~~vv~Av~~G~~AA~~I~ 746 (752)
T PRK12778 720 AGGDIVRGGATVILAMGDGKRAAAAID 746 (752)
T ss_pred EeCCccCCcHHHHHHHHHHHHHHHHHH
Confidence 99999765 356778888888887664
No 139
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=99.63 E-value=2.4e-15 Score=184.41 Aligned_cols=258 Identities=17% Similarity=0.176 Sum_probs=151.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
-.++|||+|++|+++|..|.+.| ++|+|||+++.+||.|.+. +|... ....+.......+..+ +..+
T Consensus 194 k~VaIIGaGpAGl~aA~~La~~G--~~Vtv~e~~~~~GG~l~~g---------ip~~~-~~~~~~~~~~~~l~~~-Gv~i 260 (652)
T PRK12814 194 KKVAIIGAGPAGLTAAYYLLRKG--HDVTIFDANEQAGGMMRYG---------IPRFR-LPESVIDADIAPLRAM-GAEF 260 (652)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeec---------CCCCC-CCHHHHHHHHHHHHHc-CCEE
Confidence 36899999999999999999999 9999999999999998752 21000 0000000000000000 0000
Q ss_pred --CCC---CC--C--CCCChhhhhhccCCC-CCCCCCCCCCCCCcEEeeccCC-----CCCCCCCCeEEEEcCCccHHHH
Q psy12350 820 --KGN---AD--K--SYIGAKDVLENYNHP-IYPEFKGKDMCQIPILHSRDYR-----TPEPFAGKQAVVVGSGQSGLDI 884 (1129)
Q Consensus 820 --~~~---~~--~--~~~~~~~v~~~~~~P-~~P~i~G~~~f~g~~~hs~~~~-----~~~~~~gk~VvVVG~G~Sg~ei 884 (1129)
... +. . .......++.+|+.+ +.+++||.+. .| +++..++. ......||+|+|||+|++|+|+
T Consensus 261 ~~~~~v~~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~-~g-v~~~~~~l~~~~~~~~~~~gk~VvVIGgG~~a~e~ 338 (652)
T PRK12814 261 RFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEEL-PG-VISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDA 338 (652)
T ss_pred EeCCcccCccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCc-CC-cEeHHHHHHHhhcCCcccCCCeEEEECCCHHHHHH
Confidence 000 00 0 000122233488875 5778999653 33 34433332 1223569999999999999999
Q ss_pred HHHHHhcCC-EEEEEecCCC-Cccchh-hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C---------
Q psy12350 885 TLDIATTGK-QAVVVGSGQS-GLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T--------- 948 (1129)
Q Consensus 885 A~~la~~~~-~V~vv~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~--------- 948 (1129)
|..+.+.|. +|+++.+... .++... .+.... ..+|+++.. +.++.+ +
T Consensus 339 A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~-----------------~eGV~i~~~~~~~~i~~~~~~~~v~~~~~ 401 (652)
T PRK12814 339 ARTALRLGAESVTILYRRTREEMPANRAEIEEAL-----------------AEGVSLRELAAPVSIERSEGGLELTAIKM 401 (652)
T ss_pred HHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH-----------------HcCCcEEeccCcEEEEecCCeEEEEEEEE
Confidence 999999875 6999976542 111111 000000 012222211 222211 1
Q ss_pred --------c---EEecCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-
Q psy12350 949 --------G---VRFQDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL- 1014 (1129)
Q Consensus 949 --------~---V~~~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~- 1014 (1129)
+ ....+|+ ++++|.||+|+|+.++..++.. .|+.++.++...+....+.++.|+||++|++....
T Consensus 402 ~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~-~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g~~ 480 (652)
T PRK12814 402 QQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEA-AGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTGAD 480 (652)
T ss_pred EecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcccccc-cCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCCch
Confidence 1 1112343 4799999999999999887754 66777665544555555667899999999987543
Q ss_pred hhHHHHHHHHHHHHHH
Q psy12350 1015 LFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l 1030 (1129)
....+..|++.+|..+
T Consensus 481 ~v~~Ai~~G~~AA~~I 496 (652)
T PRK12814 481 IAINAVEQGKRAAHAI 496 (652)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4466777777766554
No 140
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=99.63 E-value=3.3e-15 Score=177.23 Aligned_cols=270 Identities=19% Similarity=0.216 Sum_probs=149.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+.+.+||.+.+. +|..... ..+.......+..+ +..+
T Consensus 144 ~~VvIIGaGpAGl~aA~~l~~~G--~~V~vie~~~~~GG~l~~g---------ip~~~~~-~~~~~~~~~~~~~~-gv~~ 210 (471)
T PRK12810 144 KKVAVVGSGPAGLAAADQLARAG--HKVTVFERADRIGGLLRYG---------IPDFKLE-KEVIDRRIELMEAE-GIEF 210 (471)
T ss_pred CEEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCceeeec---------CCcccCC-HHHHHHHHHHHHhC-CcEE
Confidence 36899999999999999999999 9999999999999988742 2211000 00000000000000 0000
Q ss_pred --CCCCCCCC-------CChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC-------------CCCCCCCCCeEEEEc
Q psy12350 820 --KGNADKSY-------IGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY-------------RTPEPFAGKQAVVVG 876 (1129)
Q Consensus 820 --~~~~~~~~-------~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~-------------~~~~~~~gk~VvVVG 876 (1129)
...-.... .....++.+|+. |+.+.+||.+. . .+++..+| .......+|+|+|||
T Consensus 211 ~~~~~v~~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~-~-gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIG 288 (471)
T PRK12810 211 RTNVEVGKDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDL-D-GVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIG 288 (471)
T ss_pred EeCCEECCcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccC-C-CcEEHHHHHHHHHhhhccccccccccCCCCEEEEEC
Confidence 00000000 011223338886 77888999653 2 23332211 111245699999999
Q ss_pred CCccHHHHHHHHHhcCC-EEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC-C-c--
Q psy12350 877 SGQSGLDITLDIATTGK-QAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP-T-G-- 949 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~~~-~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~-~-~-- 949 (1129)
+|++|+|+|..+.+.+. +|+++........... .......+ .... ........+|+++.. +.++.+ + .
T Consensus 289 gG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~--~~~~~~~~-~~~~--~~~~~~~~GV~i~~~~~~~~i~~~~g~v~ 363 (471)
T PRK12810 289 GGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRN--KNNPWPYW-PMKL--EVSNAHEEGVEREFNVQTKEFEGENGKVT 363 (471)
T ss_pred CcHHHHHHHHHHHHcCCCeEEEccccCCCccccc--cccCCccc-chHH--HHHHHHHcCCeEEeccCceEEEccCCEEE
Confidence 99999999998888875 7886654321110000 00000000 0000 000000123444332 555532 1 1
Q ss_pred -E-----EecCC---------cEeeccEEEEccCccCcCC-CCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc
Q psy12350 950 -V-----RFQDG---------SYEQVDIILCCTGYSNHYP-FLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013 (1129)
Q Consensus 950 -V-----~~~dG---------~~~~~D~VI~aTG~~~~~~-fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~ 1013 (1129)
| .+.+| +++++|.||+|+|++++.. ++. .+++++++++........+.++.|+||++|++...
T Consensus 364 ~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~-~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~~~g 442 (471)
T PRK12810 364 GVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLA-QFGVELDERGRVAAPDNAYQTSNPKVFAAGDMRRG 442 (471)
T ss_pred EEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhcc-ccCcccCCCCCEEeCCCcccCCCCCEEEccccCCC
Confidence 2 22232 3589999999999999854 544 46777765544333323345789999999998765
Q ss_pred c-hhHHHHHHHHHHHHHH
Q psy12350 1014 L-LFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1014 ~-~~~~~e~qa~~~a~~l 1030 (1129)
. ....+..|++.+|..+
T Consensus 443 ~~~~~~Av~~G~~AA~~i 460 (471)
T PRK12810 443 QSLVVWAIAEGRQAARAI 460 (471)
T ss_pred chhHHHHHHHHHHHHHHH
Confidence 3 3456777777766554
No 141
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=99.62 E-value=1.5e-15 Score=173.88 Aligned_cols=267 Identities=15% Similarity=0.136 Sum_probs=152.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcc--ccccCccccc-----cccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVH--SSMYKSLKTN-----LPKDLM 812 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~--~~~y~~~~~~-----~~~~~~ 812 (1129)
.+++|||+|++|+.+|..|.+.| .+++++|+.+.+||.+.....+.. .+.. ......+... ......
T Consensus 19 ~~VvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~~~~~~----~~~~~~~~~~~~l~~~~i~~~~~~~v~ 92 (352)
T PRK12770 19 KKVAIIGAGPAGLAAAGYLACLG--YEVHVYDKLPEPGGLMLFGIPEFR----IPIERVREGVKELEEAGVVFHTRTKVC 92 (352)
T ss_pred CEEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeeecCcccc----cCHHHHHHHHHHHHhCCeEEecCcEEe
Confidence 36799999999999999999999 999999999999998764311110 0000 0000000000 000000
Q ss_pred cccCC-CCCCCCC-CC--------CCChhhhhhccC-CCCCCCCCCCCCCCCcEEeecc---------C--C---CCCCC
Q psy12350 813 ELCGY-GHKGNAD-KS--------YIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRD---------Y--R---TPEPF 867 (1129)
Q Consensus 813 ~~~~~-~~~~~~~-~~--------~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~---------~--~---~~~~~ 867 (1129)
..... ....... .. +.....++++|+ .|+.|++||.+. . .++++.+ + . ....+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (352)
T PRK12770 93 CGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDL-P-GVYSALEYLFRIRAAKLGYLPWEKVPPV 170 (352)
T ss_pred eccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccc-c-CceeHHHHHHHhhhcccccccccccccc
Confidence 00000 0000000 00 111122333898 588999999753 2 2333211 1 1 11234
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCE-EEEEecCCCCc-cchhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQ-AVVVGSGQSGL-DITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~-V~vv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
.||+|+|||+|.+|+|+|..|++.+.+ |+++.+..... +...... + .+ ...+|++..+ +.
T Consensus 171 ~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~---~----------~l---~~~gi~i~~~~~v~ 234 (352)
T PRK12770 171 EGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEI---E----------RL---IARGVEFLELVTPV 234 (352)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHH---H----------HH---HHcCCEEeeccCce
Confidence 589999999999999999999988886 99997643210 0000000 0 00 0113444332 44
Q ss_pred EEeCCc----EEe--------------------cCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeec
Q psy12350 944 ELTPTG----VRF--------------------QDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINI 999 (1129)
Q Consensus 944 ~v~~~~----V~~--------------------~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~ 999 (1129)
++++++ |++ .+++++++|.||+|+|++|+..+..+..|+.++.++...+... ..+
T Consensus 235 ~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~-~~t 313 (352)
T PRK12770 235 RIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEK-HMT 313 (352)
T ss_pred eeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCC-ccc
Confidence 443211 221 1234689999999999999976554436777765443333333 335
Q ss_pred CCCCcEEEccccc-cchhHHHHHHHHHHHHHHc
Q psy12350 1000 EHPTMFILGVPRH-TLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1000 ~~p~l~~iG~~~~-~~~~~~~e~qa~~~a~~l~ 1031 (1129)
+.|+||++|++.. ......+..||+.+|..+.
T Consensus 314 ~~~~vyaiGD~~~~~~~~~~A~~~g~~aa~~i~ 346 (352)
T PRK12770 314 SREGVFAAGDVVTGPSKIGKAIKSGLRAAQSIH 346 (352)
T ss_pred CCCCEEEEcccccCcchHHHHHHHHHHHHHHHH
Confidence 7899999999876 3456788888888887764
No 142
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=99.61 E-value=4.8e-15 Score=188.12 Aligned_cols=271 Identities=16% Similarity=0.164 Sum_probs=155.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
..+++|||+||+||++|..|.+.| ++|+|||+.+.+||...+ |+|.... -..+.......+..+ +..
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G--~~VtV~E~~~~~GG~l~~---------gip~~rl-~~e~~~~~~~~l~~~-Gv~ 496 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYG--VDVTVYEALHVVGGVLQY---------GIPSFRL-PRDIIDREVQRLVDI-GVK 496 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcC--CcEEEEecCCCCcceeec---------cCCccCC-CHHHHHHHHHHHHHC-CCE
Confidence 357899999999999999999999 999999999999997664 2331100 000000000000000 000
Q ss_pred CCCC--CCCC---------CCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCC--------------CCCCCCCCeE
Q psy12350 819 HKGN--ADKS---------YIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYR--------------TPEPFAGKQA 872 (1129)
Q Consensus 819 ~~~~--~~~~---------~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~--------------~~~~~~gk~V 872 (1129)
+..+ -... ......++.+|+ .|+.|++||.+. ..+++..+|. +.....||+|
T Consensus 497 ~~~~~~vg~~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l--~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~V 574 (1006)
T PRK12775 497 IETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFA--GQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSV 574 (1006)
T ss_pred EEeCCccCCccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCC--CCcEEHHHHHHHHHhcCccccccccCCccCCCEE
Confidence 0000 0000 111333445888 589999999643 3455554332 1123469999
Q ss_pred EEEcCCccHHHHHHHHHhcCC-EEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--
Q psy12350 873 VVVGSGQSGLDITLDIATTGK-QAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT-- 946 (1129)
Q Consensus 873 vVVG~G~Sg~eiA~~la~~~~-~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~-- 946 (1129)
+|||||++|+|+|..+.+.|+ +|+++.+... -.+..+.....+ ...+|++... +.++.
T Consensus 575 vVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a----------------~eeGI~~~~~~~p~~i~~~ 638 (1006)
T PRK12775 575 VVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHA----------------KEEGIDFFFLHSPVEIYVD 638 (1006)
T ss_pred EEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHH----------------HhCCCEEEecCCcEEEEeC
Confidence 999999999999999999886 5787765321 111000000000 0112222211 22221
Q ss_pred CCc----EEe-----------------cCCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCccccccc----ceeec
Q psy12350 947 PTG----VRF-----------------QDGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYK----HTINI 999 (1129)
Q Consensus 947 ~~~----V~~-----------------~dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~----~~~~~ 999 (1129)
+++ |++ .+|+ ++++|.||+|+|+.++..++....++.+++.+...... ..+.+
T Consensus 639 ~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~T 718 (1006)
T PRK12775 639 AEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQST 718 (1006)
T ss_pred CCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCC
Confidence 111 111 1233 58999999999999997665543456665544333332 34567
Q ss_pred CCCCcEEEcccccc-chhHHHHHHHHHHHHH----HcCCCCCCCHH
Q psy12350 1000 EHPTMFILGVPRHT-LLFNLFDLQVRLFQQL----MQGHITLPSKE 1040 (1129)
Q Consensus 1000 ~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~----l~g~~~lp~~~ 1040 (1129)
+.|+||++|++..+ .....+..+++.+|.. |.+....|...
T Consensus 719 s~pgVFAaGDv~~G~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~~~~~ 764 (1006)
T PRK12775 719 NLPGVFAGGDIVTGGATVILAMGAGRRAARSIATYLRLGKKWPITA 764 (1006)
T ss_pred CCCCEEEecCcCCCccHHHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence 89999999998755 3456777788877765 45554444433
No 143
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=99.59 E-value=1.4e-15 Score=160.19 Aligned_cols=147 Identities=32% Similarity=0.570 Sum_probs=86.1
Q ss_pred cccccCCchhhHHHHHHhhCCCcc-eEEEcccCCcCcccccC-CCCCCCCCCCCccccccCcccccccccc--ccccCCC
Q psy12350 743 IVDRHGPGGLTATKRLTEAGNGFT-CTTFEQADNIGGTWLYT-EHIGCDQYGLPVHSSMYKSLKTNLPKDL--MELCGYG 818 (1129)
Q Consensus 743 ~iiG~G~~gl~~a~~l~~~g~~~~-v~v~E~~~~~GG~w~~~-~~~g~~~~g~p~~~~~y~~~~~~~~~~~--~~~~~~~ 818 (1129)
+|||||++||++|.+|++.| .+ ++||||++.+||.|... .+..... | ....... ..+ .. ..+...+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g--~~~v~v~e~~~~~Gg~w~~~~~~~~~~~---~--~~~~~~~--~~~-~~~~~~~~~~~ 70 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERG--IDPVVVLERNDRPGGVWRRYYSYTRLHS---P--SFFSSDF--GLP-DFESFSFDDSP 70 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT-----EEEEESSSSSTTHHHCH-TTTT-BS---S--SCCTGGS--S---CCCHSCHHHHH
T ss_pred CEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCeeEEeCCCCcccc---C--ccccccc--cCC-cccccccccCC
Confidence 58999999999999999999 88 99999999999999842 1111100 0 0000000 000 00 0000000
Q ss_pred CCCCCCCCCCChhhhh-----------------------------------------------hcc--CCCCCCCCCCCC
Q psy12350 819 HKGNADKSYIGAKDVL-----------------------------------------------ENY--NHPIYPEFKGKD 849 (1129)
Q Consensus 819 ~~~~~~~~~~~~~~v~-----------------------------------------------~~~--~~P~~P~i~G~~ 849 (1129)
.. .+...++..+++. .+| +.|++|++|| .
T Consensus 71 ~~-~~~~~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g-~ 148 (203)
T PF13738_consen 71 EW-RWPHDFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPG-S 148 (203)
T ss_dssp HH-HHSBSSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TT-G
T ss_pred CC-CCCcccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccc-c
Confidence 00 0001112222221 144 6899999999 2
Q ss_pred CCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 850 MCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 850 ~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
.+. ..+|+.++.++.++++|+|+|||+|.||+|+|.+|++.+++|+++.|++
T Consensus 149 ~~~-~~~h~~~~~~~~~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~ 200 (203)
T PF13738_consen 149 AFR-PIIHSADWRDPEDFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSP 200 (203)
T ss_dssp GCS-EEEEGGG-STTGGCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS-
T ss_pred ccc-ceEehhhcCChhhcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCC
Confidence 233 8899999999999999999999999999999999999999999998865
No 144
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=99.59 E-value=8.8e-16 Score=177.34 Aligned_cols=264 Identities=15% Similarity=0.154 Sum_probs=153.5
Q ss_pred ccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCcccccCCCCCCCCC---C-CCccccccCcccccccccccccc-
Q psy12350 742 NIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGGTWLYTEHIGCDQY---G-LPVHSSMYKSLKTNLPKDLMELC- 815 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~---g-~p~~~~~y~~~~~~~~~~~~~~~- 815 (1129)
++|||+|++|+.+|++|+++ .+..+|+|+|+++..= +..+-++ | .+.. .+...+.....+.-..|-
T Consensus 2 vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~-------~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~gv~~~~ 73 (364)
T TIGR03169 2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTP-------YSGMLPGMIAGHYSLD-EIRIDLRRLARQAGARFVI 73 (364)
T ss_pred EEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCc-------ccchhhHHHheeCCHH-HhcccHHHHHHhcCCEEEE
Confidence 68999999999999999654 4458999999987521 1110000 0 0000 000000000000000000
Q ss_pred C----CCCCC-----CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeecc----------CCCC-C-CCCCCeEEE
Q psy12350 816 G----YGHKG-----NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRD----------YRTP-E-PFAGKQAVV 874 (1129)
Q Consensus 816 ~----~~~~~-----~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~----------~~~~-~-~~~gk~VvV 874 (1129)
+ ..... .....+....-++++|+.|..|++||..+. ++.... +... . ...+|+|+|
T Consensus 74 ~~v~~id~~~~~V~~~~g~~~~yD~LviAtG~~~~~~~i~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvV 150 (364)
T TIGR03169 74 AEATGIDPDRRKVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADL---AVPVKPIENFLARWEALLESADAPPGTKRLAV 150 (364)
T ss_pred EEEEEEecccCEEEECCCCcccccEEEEccCCCCCCCCCCccccc---ccccCCHHHHHHHHHHHHHHHhcCCCCceEEE
Confidence 0 00000 001223344455669999999999995431 111111 1010 0 124689999
Q ss_pred EcCCccHHHHHHHHHhc----C--CEEEEEecCCCCcc-chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEE
Q psy12350 875 VGSGQSGLDITLDIATT----G--KQAVVVGSGQSGLD-ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~----~--~~V~vv~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v 945 (1129)
||+|.+|+|+|.+|++. + .+|+++ +.+..++ +.+.......+ .+. ..+|++..+ +.++
T Consensus 151 vG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~---------~l~---~~gV~v~~~~~v~~i 217 (364)
T TIGR03169 151 VGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLR---------LLA---RRGIEVHEGAPVTRG 217 (364)
T ss_pred ECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHH---------HHH---HCCCEEEeCCeeEEE
Confidence 99999999999999853 3 589998 4332221 11111111111 111 126777654 8888
Q ss_pred eCCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc------chhHHH
Q psy12350 946 TPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------LLFNLF 1019 (1129)
Q Consensus 946 ~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------~~~~~~ 1019 (1129)
+++.|.+.+|+++++|.||+|+|.+++ +++.. .++.+++.+...+...+..+++||||++|++... .....+
T Consensus 218 ~~~~v~~~~g~~i~~D~vi~a~G~~p~-~~l~~-~gl~~~~~g~i~vd~~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~A 295 (364)
T TIGR03169 218 PDGALILADGRTLPADAILWATGARAP-PWLAE-SGLPLDEDGFLRVDPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYA 295 (364)
T ss_pred cCCeEEeCCCCEEecCEEEEccCCChh-hHHHH-cCCCcCCCCeEEECCccccCCCCCEEEeeeeeecCCCCCCCchHHH
Confidence 888899999999999999999999997 55653 4556655444444444434589999999998642 134568
Q ss_pred HHHHHHHHHHHc
Q psy12350 1020 DLQVRLFQQLMQ 1031 (1129)
Q Consensus 1020 e~qa~~~a~~l~ 1031 (1129)
..||+.+|+++.
T Consensus 296 ~~~g~~~a~ni~ 307 (364)
T TIGR03169 296 VRQAPILAANLR 307 (364)
T ss_pred HHhHHHHHHHHH
Confidence 889998888774
No 145
>KOG4716|consensus
Probab=99.57 E-value=4.3e-15 Score=153.61 Aligned_cols=180 Identities=19% Similarity=0.192 Sum_probs=117.8
Q ss_pred ccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccc
Q psy12350 836 NYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRA 915 (1129)
Q Consensus 836 ~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~ 915 (1129)
+|.+|++|+|||..+ .-+.|.+.....-..|| -+|||+|+.|+|+|..|+..|.+||+.-|+-.+..++.++.+..
T Consensus 169 tG~RPrYp~IpG~~E---y~ITSDDlFsl~~~PGk-TLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v 244 (503)
T KOG4716|consen 169 TGLRPRYPDIPGAKE---YGITSDDLFSLPYEPGK-TLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELV 244 (503)
T ss_pred ecCCCCCCCCCCcee---eeecccccccccCCCCc-eEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHH
Confidence 999999999999765 35677776655444454 67889999999999999999999998877554444443333222
Q ss_pred cEEEEecCCccccccCCCCCeEEc----C-CeeEEeCCc--EEec---CCc--EeeccEEEEccCccCcCCCCC-CCCCe
Q psy12350 916 STVFLSHHSERVTSLCLPNNVVLK----P-DVAELTPTG--VRFQ---DGS--YEQVDIILCCTGYSNHYPFLH-ESCGI 982 (1129)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~V~~~----~-~i~~v~~~~--V~~~---dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~ 982 (1129)
...+..+ +|++. + .|+.++++. |... .++ +.+.|+|+||.|.++...-|. +..|+
T Consensus 245 ~~~m~~~------------Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GV 312 (503)
T KOG4716|consen 245 AEHMEER------------GIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGV 312 (503)
T ss_pred HHHHHHh------------CCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchhhcCCCccce
Confidence 2211111 22221 1 145554444 2211 122 348999999999999876554 33678
Q ss_pred eecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHHHc
Q psy12350 983 KVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 983 ~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l~ 1031 (1129)
..++....-+-+..-.++.|++|+||++... -..|++.+.+|.+|+.+-
T Consensus 313 k~n~ks~KI~v~~~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf 363 (503)
T KOG4716|consen 313 KTNEKSGKIPVDDEEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLF 363 (503)
T ss_pred eecccCCccccChHHhcCCCceEEecceecCCcccchhhhhhchHHHHHHh
Confidence 7754332222333345689999999998543 466999999999997654
No 146
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=99.57 E-value=1e-15 Score=171.69 Aligned_cols=216 Identities=18% Similarity=0.189 Sum_probs=109.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccc-cCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKT-NLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~~~~~~~d~ 87 (1129)
.+|+++||.||++|+.|..|.+.+ ..++..|||++.. .|. +|....|.....+....|.+ ..|..-+.|..|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~-~~~~~f~e~~~~f--~Wh----~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnY 74 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG-DLKALFLERRPSF--SWH----PGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNY 74 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH----EEEEES-SS----TT----GGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHH
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC-CCCEEEEecCCCC--CcC----CccCCCCCccccccccccCcCcCCCCcccHHHH
Confidence 479999999999999999999854 5899999997743 232 22111111111111111111 111111111111
Q ss_pred CCCC-------CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccC-CCCceEEeccccCccceEEecce
Q psy12350 88 HHKG-------HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINI-EHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 88 ~~~~-------~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
-... .-...+|++.++.+|++..+++++. .++++++|+.|+...... ..|.|...+ ..+.......+
T Consensus 75 L~~~~rl~~f~~~~~~~p~R~ef~dYl~Wva~~~~~--~v~~~~~V~~I~~~~~~~~~~~~V~~~~-~~g~~~~~~ar-- 149 (341)
T PF13434_consen 75 LHEHGRLYEFYNRGYFFPSRREFNDYLRWVAEQLDN--QVRYGSEVTSIEPDDDGDEDLFRVTTRD-SDGDGETYRAR-- 149 (341)
T ss_dssp HHHTT-HHHHHHH--SS-BHHHHHHHHHHHHCCGTT--TEEESEEEEEEEEEEETTEEEEEEEEEE-TTS-EEEEEES--
T ss_pred HHHcCChhhhhhcCCCCCCHHHHHHHHHHHHHhCCC--ceEECCEEEEEEEecCCCccEEEEEEee-cCCCeeEEEeC--
Confidence 0000 0012467999999999999999863 699999999998754211 135565544 33334444455
Q ss_pred eeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccc
Q psy12350 160 VRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARC 239 (1129)
Q Consensus 160 ~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 239 (1129)
.|||||| ..|.+|+.-. .+.+ .-...|+..|+...
T Consensus 150 ---~vVla~G--~~P~iP~~~~----~~~~-----------~~~v~Hss~~~~~~------------------------- 184 (341)
T PF13434_consen 150 ---NVVLATG--GQPRIPEWFQ----DLPG-----------SPRVFHSSEYLSRI------------------------- 184 (341)
T ss_dssp ---EEEE------EE---GGGG----GGTT------------TTEEEGGGHHHHH-------------------------
T ss_pred ---eEEECcC--CCCCCCcchh----hcCC-----------CCCEEEehHhhhcc-------------------------
Confidence 8999999 8888886521 1000 01123333331110
Q ss_pred ccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccccc--EEEEccccCCcc
Q psy12350 240 SEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT--TVFLSHHSEHVK 295 (1129)
Q Consensus 240 ~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~--~V~lv~r~~~~~ 295 (1129)
.. ....++++| ||||-||.|++..|.+.+. +|+++.|+..+.
T Consensus 185 ~~---~~~~~~V~V-----------VGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~ 228 (341)
T PF13434_consen 185 DQ---SLAGKRVAV-----------VGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFF 228 (341)
T ss_dssp T--------EEEEE-----------E-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-E
T ss_pred cc---ccCCCeEEE-----------ECCcHhHHHHHHHHHhCCCCcEEEEEECCCccC
Confidence 01 112344444 8999999999999988864 899999988553
No 147
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=99.56 E-value=5.3e-15 Score=174.46 Aligned_cols=188 Identities=15% Similarity=0.253 Sum_probs=131.2
Q ss_pred hhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-------CCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 830 AKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-------EPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 830 ~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-------~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
..-++++|+.|+.|++||++. ..+++..+..+. ....+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+
T Consensus 93 d~lIiATG~~p~~~~i~G~~~--~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~ 170 (427)
T TIGR03385 93 DYLILSPGASPIVPNIEGINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSE 170 (427)
T ss_pred CEEEECCCCCCCCCCCCCcCC--CCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEECCc
Confidence 344566999999999999762 234443332211 12457999999999999999999999999999998865
Q ss_pred CCc-c-chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc--EEecCCcEeeccEEEEccCccCcCCCC
Q psy12350 903 SGL-D-ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG--VRFQDGSYEQVDIILCCTGYSNHYPFL 976 (1129)
Q Consensus 903 ~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl 976 (1129)
..+ + +.+.+.....+ .+. ..+|++..+ +.++++++ +.+.+|+++++|.||+|||++++.+++
T Consensus 171 ~~~~~~~~~~~~~~~~~---------~l~---~~gV~v~~~~~v~~i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l 238 (427)
T TIGR03385 171 RILNKLFDEEMNQIVEE---------ELK---KHEINLRLNEEVDSIEGEERVKVFTSGGVYQADMVILATGIKPNSELA 238 (427)
T ss_pred ccCccccCHHHHHHHHH---------HHH---HcCCEEEeCCEEEEEecCCCEEEEcCCCEEEeCEEEECCCccCCHHHH
Confidence 432 1 11111111110 011 125666543 88887654 377889999999999999999998877
Q ss_pred CCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHHHHHHHHHHHHHHcCC
Q psy12350 977 HESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 977 ~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.. +|+.+++++...+... +.++.||||++|++... ...+.+..||+++|+.|.|.
T Consensus 239 ~~-~gl~~~~~G~i~vd~~-~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~ni~g~ 304 (427)
T TIGR03385 239 KD-SGLKLGETGAIWVNEK-FQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGENIAGN 304 (427)
T ss_pred Hh-cCcccCCCCCEEECCC-cEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHHHhcCC
Confidence 54 6777765544444433 34589999999998642 34588999999999999885
No 148
>KOG1336|consensus
Probab=99.55 E-value=4.4e-14 Score=155.47 Aligned_cols=244 Identities=17% Similarity=0.192 Sum_probs=150.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccccccc-ccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLME-LCGY 817 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~-~~~~ 817 (1129)
--.++|+|+|++|..|+.++++.++...++++-++..+ .|. -|-.+..+.....+..+..-+ |.++
T Consensus 74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~-------pyd------r~~Ls~~~~~~~~~~a~r~~e~Yke~ 140 (478)
T KOG1336|consen 74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLL-------PYD------RARLSKFLLTVGEGLAKRTPEFYKEK 140 (478)
T ss_pred cceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccC-------ccc------chhcccceeeccccccccChhhHhhc
Confidence 34568999999999999999999987788888765421 110 000011111111111111111 1111
Q ss_pred CCC-------------C-----CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-----CCCCCeEEE
Q psy12350 818 GHK-------------G-----NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-----PFAGKQAVV 874 (1129)
Q Consensus 818 ~~~-------------~-----~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-----~~~gk~VvV 874 (1129)
-+. . .....+....-++.+|+.|+.|++||.+. -.+....+..+.. --.+++|++
T Consensus 141 gIe~~~~t~v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~~~l~~pG~~~--~nv~~ireieda~~l~~~~~~~~~vV~ 218 (478)
T KOG1336|consen 141 GIELILGTSVVKADLASKTLVLGNGETLKYSKLIIATGSSAKTLDIPGVEL--KNVFYLREIEDANRLVAAIQLGGKVVC 218 (478)
T ss_pred CceEEEcceeEEeeccccEEEeCCCceeecceEEEeecCccccCCCCCccc--cceeeeccHHHHHHHHHHhccCceEEE
Confidence 000 0 00111222223333999999999999872 1222222222211 113788999
Q ss_pred EcCCccHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCc-
Q psy12350 875 VGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTG- 949 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~- 949 (1129)
+|+|..|+|+|.+|...+.+||++...++.++- .+.+.+... ..+. ..+|++.. .+.+++++.
T Consensus 219 vG~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~---------~y~e---~kgVk~~~~t~~s~l~~~~~ 286 (478)
T KOG1336|consen 219 VGGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYE---------DYYE---NKGVKFYLGTVVSSLEGNSD 286 (478)
T ss_pred ECchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHH---------HHHH---hcCeEEEEecceeecccCCC
Confidence 999999999999999999999999886655431 111111111 1111 12455543 377775532
Q ss_pred -----EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc
Q psy12350 950 -----VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012 (1129)
Q Consensus 950 -----V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~ 1012 (1129)
|.+.||+++++|.||+++|-+|+.+|+.. |..++.++..+++.. |.+++||+|++|++..
T Consensus 287 Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~~--g~~~~~~G~i~V~~~-f~t~~~~VyAiGDva~ 351 (478)
T KOG1336|consen 287 GEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLEK--GILLDSKGGIKVDEF-FQTSVPNVYAIGDVAT 351 (478)
T ss_pred CcEEEEEeccCCEeccCeEEEeeccccccccccc--cceecccCCEeehhc-eeeccCCcccccceee
Confidence 78899999999999999999999999985 566677766666554 5667999999999864
No 149
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.55 E-value=9.7e-14 Score=171.27 Aligned_cols=261 Identities=17% Similarity=0.203 Sum_probs=147.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccccccccc-CCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELC-GYG 818 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~-~~~ 818 (1129)
..++|||+|++||++|..|.+.| ++|+|||+.+.+||.+.+ |+|... +-..+.......+..+. ++.
T Consensus 328 ~~VaIIGaGpAGLsaA~~L~~~G--~~V~V~E~~~~~GG~l~~---------gip~~~-l~~~~~~~~~~~~~~~Gv~~~ 395 (654)
T PRK12769 328 KRVAIIGAGPAGLACADVLARNG--VAVTVYDRHPEIGGLLTF---------GIPAFK-LDKSLLARRREIFSAMGIEFE 395 (654)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceeee---------cCCCcc-CCHHHHHHHHHHHHHCCeEEE
Confidence 36799999999999999999999 999999999999999875 222110 00000000000000000 000
Q ss_pred CCCCCCCCC-------CChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC-----------C---C--CCCCCCCeEEE
Q psy12350 819 HKGNADKSY-------IGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY-----------R---T--PEPFAGKQAVV 874 (1129)
Q Consensus 819 ~~~~~~~~~-------~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~-----------~---~--~~~~~gk~VvV 874 (1129)
....-.... .....++.+|+. +..+.+||.+. .| +++..+| . + ...+.||+|+|
T Consensus 396 ~~~~v~~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~-~G-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvV 473 (654)
T PRK12769 396 LNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDA-PG-VYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVV 473 (654)
T ss_pred CCCEeCCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCC-CC-eEEhHHHHHHHHhhhccCccccccccccCCCCeEEE
Confidence 000000000 001112336664 44567888653 23 3221111 0 1 01357899999
Q ss_pred EcCCccHHHHHHHHHhcCC-EEEEEecCCCC-ccchhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEe--CC
Q psy12350 875 VGSGQSGLDITLDIATTGK-QAVVVGSGQSG-LDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELT--PT 948 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~-~V~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~--~~ 948 (1129)
||+|++|+|+|..+.+.|+ +|+++.+.... ++..+.....+. ..+|++.. .+.++. ++
T Consensus 474 IGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~~~~~----------------~~Gv~~~~~~~~~~i~~~~~ 537 (654)
T PRK12769 474 LGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEVKNAR----------------EEGANFEFNVQPVALELNEQ 537 (654)
T ss_pred ECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHHHHHH----------------HcCCeEEeccCcEEEEECCC
Confidence 9999999999999888875 79998764321 221111111000 11222221 122221 11
Q ss_pred c----EEe------------------cCCc--EeeccEEEEccCccCcC-CCCCCCCCeeecCCccccccc---ceeecC
Q psy12350 949 G----VRF------------------QDGS--YEQVDIILCCTGYSNHY-PFLHESCGIKVVNKNVQPLYK---HTINIE 1000 (1129)
Q Consensus 949 ~----V~~------------------~dG~--~~~~D~VI~aTG~~~~~-~fl~~~~g~~~~~~~~~~ly~---~~~~~~ 1000 (1129)
+ |++ ..|+ ++++|.||+|+|+.++. .++.. ++++++.++...... ..+.++
T Consensus 538 g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~~~~Ts 616 (654)
T PRK12769 538 GHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLES-HGVTVDKWGRIIADVESQYRYQTS 616 (654)
T ss_pred CeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccc-cCCcCCCCCCEEeCCCcccCcccC
Confidence 1 111 1233 48999999999999984 45544 677776654433221 124578
Q ss_pred CCCcEEEcccccc-chhHHHHHHHHHHHHHHc
Q psy12350 1001 HPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1001 ~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
.|+||++|++..+ .....+..|++.+|..+.
T Consensus 617 ~~gVfAaGD~~~g~~~vv~Ai~~Gr~AA~~I~ 648 (654)
T PRK12769 617 NPKIFAGGDAVRGADLVVTAMAEGRHAAQGII 648 (654)
T ss_pred CCCEEEcCCcCCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999998765 355778888988887764
No 150
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=99.53 E-value=8.3e-14 Score=164.57 Aligned_cols=260 Identities=18% Similarity=0.206 Sum_probs=148.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
..++|||+|++|+++|..|.+.| ++|++||+.+.+||.+.+ |+|... .-..+.......+..+ +..+
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G--~~V~i~e~~~~~gG~l~~---------gip~~~-~~~~~~~~~~~~~~~~-Gv~~ 208 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAG--VQVVVFDRHPEIGGLLTF---------GIPSFK-LDKAVLSRRREIFTAM-GIEF 208 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCCceeee---------cCcccc-CCHHHHHHHHHHHHHC-CCEE
Confidence 46799999999999999999999 999999999999998874 222110 0000000000000000 0000
Q ss_pred --CCCCCCCC-------CChhhhhhccCCCC-CCCCCCCCCCCCcEEeeccC-----------C-----CCCCCCCCeEE
Q psy12350 820 --KGNADKSY-------IGAKDVLENYNHPI-YPEFKGKDMCQIPILHSRDY-----------R-----TPEPFAGKQAV 873 (1129)
Q Consensus 820 --~~~~~~~~-------~~~~~v~~~~~~P~-~P~i~G~~~f~g~~~hs~~~-----------~-----~~~~~~gk~Vv 873 (1129)
...-.... .....++.+|+.+. .+++||.+. + .+++..+| . ......+|+|+
T Consensus 209 ~~~~~v~~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~-~-gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~Vv 286 (467)
T TIGR01318 209 HLNCEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDA-P-GVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVV 286 (467)
T ss_pred ECCCEeCCccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCC-C-CcEEHHHHHHHHHHHhcCCCccccccccccCCCEEE
Confidence 00000000 01122333888764 467888654 2 23332211 0 01124689999
Q ss_pred EEcCCccHHHHHHHHHhcC-CEEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--
Q psy12350 874 VVGSGQSGLDITLDIATTG-KQAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP-- 947 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~-~~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~-- 947 (1129)
|||+|.+|+|+|..+.+.| ++||++.+... .++..+.....+ ...+|++... +.++..
T Consensus 287 VIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~~~~----------------~~~GV~~~~~~~~~~i~~~~ 350 (467)
T TIGR01318 287 VLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREVANA----------------REEGVEFLFNVQPVYIECDE 350 (467)
T ss_pred EECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHHHHH----------------HhcCCEEEecCCcEEEEECC
Confidence 9999999999999999988 47999987542 111111000000 0112333222 333321
Q ss_pred Cc----EEe------------------cCC--cEeeccEEEEccCccCcC-CCCCCCCCeeecCCccccc---ccceeec
Q psy12350 948 TG----VRF------------------QDG--SYEQVDIILCCTGYSNHY-PFLHESCGIKVVNKNVQPL---YKHTINI 999 (1129)
Q Consensus 948 ~~----V~~------------------~dG--~~~~~D~VI~aTG~~~~~-~fl~~~~g~~~~~~~~~~l---y~~~~~~ 999 (1129)
++ |++ .+| .++++|.||+|+|++++. .++.. .++++++++.... |...+.+
T Consensus 351 ~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~-~gl~~~~~g~i~vd~~~~~~~~T 429 (467)
T TIGR01318 351 DGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAG-HGITLDSWGRIITGDVSYLPYQT 429 (467)
T ss_pred CCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccc-cCccCCCCCCEEeCCccccCccC
Confidence 11 111 112 357999999999999984 44543 5666665443222 2234456
Q ss_pred CCCCcEEEccccccc-hhHHHHHHHHHHHHHHc
Q psy12350 1000 EHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1000 ~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~ 1031 (1129)
+.|+||++|++.... ....+..|++.+|..+.
T Consensus 430 ~~~gVfa~GD~~~~~~~~~~Ai~~G~~aA~~i~ 462 (467)
T TIGR01318 430 TNPKIFAGGDAVRGADLVVTAVAEGRQAAQGIL 462 (467)
T ss_pred CCCCEEEECCcCCCccHHHHHHHHHHHHHHHHH
Confidence 899999999987653 45678888998887764
No 151
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=99.51 E-value=3.3e-13 Score=160.09 Aligned_cols=275 Identities=20% Similarity=0.190 Sum_probs=146.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
..++|||+|++|+.+|..|.+.| ++|++||+.+.+||...+. +|... .-..+.......+... +..+
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g--~~V~v~e~~~~~gG~l~~g---------ip~~~-~~~~~~~~~~~~~~~~-Gv~~ 210 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAG--HTVTVFEREDRCGGLLMYG---------IPNMK-LDKAIVDRRIDLLSAE-GIDF 210 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCCCceeecc---------CCCcc-CCHHHHHHHHHHHHhC-CCEE
Confidence 36799999999999999999999 9999999999999977642 22100 0000000000000000 1100
Q ss_pred CCC--CCCCC-------CChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC--------CC-------CCCCCCCeEEE
Q psy12350 820 KGN--ADKSY-------IGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY--------RT-------PEPFAGKQAVV 874 (1129)
Q Consensus 820 ~~~--~~~~~-------~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~--------~~-------~~~~~gk~VvV 874 (1129)
... -.... .....++.+|+. |+.|++||.+. +| ++...++ .+ .....+|+|+|
T Consensus 211 ~~~~~v~~~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~-~g-V~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvV 288 (485)
T TIGR01317 211 VTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPGREL-KG-IHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVV 288 (485)
T ss_pred ECCCEeCCccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCC-CC-cEeHHHHHHHHhhhhccccccccccccCCCCEEEE
Confidence 000 00000 011223338887 88999999653 32 2222111 00 11256899999
Q ss_pred EcCCccHHHHHHHHHhcC-CEEEEEecCCCCccch------hhhh-----ccccEEEEe-cCCccccccCCCCCeEEc--
Q psy12350 875 VGSGQSGLDITLDIATTG-KQAVVVGSGQSGLDIT------LDIA-----TRASTVFLS-HHSERVTSLCLPNNVVLK-- 939 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~-~~V~vv~~~~~~~~~~------~~~~-----~~~~~~~~~-~~~~~~~~~~~~~~V~~~-- 939 (1129)
||+|++|+|+|..+.+.+ ++|++++..+..+... +.+. ..+...... ...........+..|.-.
T Consensus 289 iGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~~~i~~~~~ 368 (485)
T TIGR01317 289 IGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILTKEFIGDDE 368 (485)
T ss_pred ECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCcEEEEEcCC
Confidence 999999999988877765 6899997755432110 0000 000000000 000000000000000000
Q ss_pred CCeeEEe---------CCc---EEecCC--cEeeccEEEEccCcc-CcCCCCCCCCCeeecCCcccccccceeecCCCCc
Q psy12350 940 PDVAELT---------PTG---VRFQDG--SYEQVDIILCCTGYS-NHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTM 1004 (1129)
Q Consensus 940 ~~i~~v~---------~~~---V~~~dG--~~~~~D~VI~aTG~~-~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l 1004 (1129)
..+..+. +++ .....| .++++|.||+|+|.. ++.+++.. .|++++.++..........++.|+|
T Consensus 369 g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~-~gl~~~~~G~i~~~~~~~~Ts~~gV 447 (485)
T TIGR01317 369 GKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDD-FGVKKTRRGNISAGYDDYSTSIPGV 447 (485)
T ss_pred CeEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccc-cCcccCCCCCEEecCCCceECCCCE
Confidence 0121111 111 111122 258999999999996 77777764 6777655443333334456789999
Q ss_pred EEEccccccc-hhHHHHHHHHHHHHHH
Q psy12350 1005 FILGVPRHTL-LFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1005 ~~iG~~~~~~-~~~~~e~qa~~~a~~l 1030 (1129)
|++|++..+. ....+..|++.+|..+
T Consensus 448 fAaGD~~~g~~~~~~Av~~G~~AA~~i 474 (485)
T TIGR01317 448 FAAGDCRRGQSLIVWAINEGRKAAAAV 474 (485)
T ss_pred EEeeccCCCcHHHHHHHHHHHHHHHHH
Confidence 9999987543 4456777777776654
No 152
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=1.5e-13 Score=142.86 Aligned_cols=264 Identities=14% Similarity=0.239 Sum_probs=161.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+||||||||-+||.+.++ .|.+.-++ .+..||+..-+ .-. -.|-.-
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~--aerfGGQvldT--------------~~I-----------ENfIsv 260 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLV--AERFGGQVLDT--------------MGI-----------ENFISV 260 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHh--hcchhhhh--hhhhCCeeccc--------------cch-----------hheecc
Confidence 46899999999999999999999 45664443 13478887620 000 111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
| .....++..-|+...+++++ .+.--.+.+++.+.....+-.+++. .++ ....-. .+|+|
T Consensus 261 ~--------~teGpkl~~ale~Hv~~Y~v--Dimn~qra~~l~~a~~~~~l~ev~l---~nG--avLkak-----tvIls 320 (520)
T COG3634 261 P--------ETEGPKLAAALEAHVKQYDV--DVMNLQRASKLEPAAVEGGLIEVEL---ANG--AVLKAR-----TVILA 320 (520)
T ss_pred c--------cccchHHHHHHHHHHhhcCc--hhhhhhhhhcceecCCCCccEEEEe---cCC--ceeccc-----eEEEe
Confidence 1 22455788888888888876 4444445555554221111122221 222 222233 69999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| .+-+-..+||+.+..-+|. .| |- .+..++ ++
T Consensus 321 tG--ArWRn~nvPGE~e~rnKGV------------------ay----CP---------------------HCDGPL--F~ 353 (520)
T COG3634 321 TG--ARWRNMNVPGEDEYRNKGV------------------AY----CP---------------------HCDGPL--FK 353 (520)
T ss_pred cC--cchhcCCCCchHHHhhCCe------------------ee----CC---------------------CCCCcc--cC
Confidence 99 4445566777554443332 01 10 122333 45
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc--------cCCC-CeEEcCCceEEcCCc--
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL--------RFPN-NVVKKPDIAELTPTG-- 316 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~--------~~~~-~i~~~~~v~~~~~~~-- 316 (1129)
+|++.| ||||+||+|.|..|+...++||+.+-.+.+..- .+++ .|..+..-+++.+++
T Consensus 354 gK~VAV-----------IGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~k 422 (520)
T COG3634 354 GKRVAV-----------IGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDK 422 (520)
T ss_pred CceEEE-----------ECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecCCce
Confidence 777777 699999999999999999999999877655321 1222 456677778887763
Q ss_pred ---eEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc
Q psy12350 317 ---VRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP 381 (1129)
Q Consensus 317 ---v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~ 381 (1129)
+...| |+ .++-+-|++-.|.-|+..||+... ..++..-.-..++ =+++.|++|..|..-..|
T Consensus 423 V~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~v--el~~rGEIivD~~-g~TsvpGvFAAGD~T~~~ 492 (520)
T COG3634 423 VTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAV--ELNRRGEIIVDAR-GETNVPGVFAAGDCTTVP 492 (520)
T ss_pred ecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchh--hcCcCccEEEecC-CCcCCCceeecCcccCCc
Confidence 34433 43 347889999999999999998643 3322221111111 136789999999875443
No 153
>PRK13984 putative oxidoreductase; Provisional
Probab=99.49 E-value=1.6e-13 Score=168.47 Aligned_cols=258 Identities=18% Similarity=0.193 Sum_probs=144.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
-.++|||+|++|+++|..|.+.| ++|+|||+.+..||.+.+. +|... ....+.......+..+ +..+
T Consensus 284 ~~v~IIGaG~aGl~aA~~L~~~G--~~v~vie~~~~~gG~~~~~---------i~~~~-~~~~~~~~~~~~~~~~-gv~~ 350 (604)
T PRK13984 284 KKVAIVGSGPAGLSAAYFLATMG--YEVTVYESLSKPGGVMRYG---------IPSYR-LPDEALDKDIAFIEAL-GVKI 350 (604)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCceEeec---------CCccc-CCHHHHHHHHHHHHHC-CcEE
Confidence 45789999999999999999999 9999999999999987642 21110 0000000000000000 0000
Q ss_pred --CCCCCCC-------CCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccCCC---------C-CCCCCCeEEEEcCCc
Q psy12350 820 --KGNADKS-------YIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDYRT---------P-EPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 820 --~~~~~~~-------~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~~~---------~-~~~~gk~VvVVG~G~ 879 (1129)
...-... ......++.+|+. |+.+++||.+. ..++++.++.. . ....+|+|+|||||.
T Consensus 351 ~~~~~v~~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~--~gv~~a~~~l~~~~~~~~~~~~~~~~~k~VvVIGGG~ 428 (604)
T PRK13984 351 HLNTRVGKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDH--PDVIQALPLLREIRDYLRGEGPKPKIPRSLVVIGGGN 428 (604)
T ss_pred ECCCEeCCcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCC--cCeEeHHHHHHHHHhhhccCCCcCCCCCcEEEECCch
Confidence 0000000 0112223338875 68889999753 22444333211 1 123479999999999
Q ss_pred cHHHHHHHHHhcCC------EEEEEec--CCCCccchhh-hhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--
Q psy12350 880 SGLDITLDIATTGK------QAVVVGS--GQSGLDITLD-IATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT-- 946 (1129)
Q Consensus 880 Sg~eiA~~la~~~~------~V~vv~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~-- 946 (1129)
+|+|+|..+++.++ +|+++.. ....++.... +.... ..+|++... +.++.
T Consensus 429 ~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~~-----------------~~GV~i~~~~~~~~i~~~ 491 (604)
T PRK13984 429 VAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEGL-----------------EEGVVIYPGWGPMEVVIE 491 (604)
T ss_pred HHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHHH-----------------HcCCEEEeCCCCEEEEcc
Confidence 99999999998753 7887632 1111111110 00000 012222111 11111
Q ss_pred -----------------CCc---EEe--cCCcEeeccEEEEccCccCcCCCCCCCC--CeeecCCcccccccceeecCCC
Q psy12350 947 -----------------PTG---VRF--QDGSYEQVDIILCCTGYSNHYPFLHESC--GIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 947 -----------------~~~---V~~--~dG~~~~~D~VI~aTG~~~~~~fl~~~~--g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
+++ ... .+++++++|.||+|+|++++..+|..++ ++.+++.. ..+.. .+.++.|
T Consensus 492 ~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~~~G~-i~vd~-~~~Ts~~ 569 (604)
T PRK13984 492 NDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEFVRGR-ILTNE-YGQTSIP 569 (604)
T ss_pred CCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccccCCe-EEeCC-CCccCCC
Confidence 111 111 1223689999999999999988876433 24443322 22222 3456899
Q ss_pred CcEEEccccccchhHHHHHHHHHHHHHHc
Q psy12350 1003 TMFILGVPRHTLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1003 ~l~~iG~~~~~~~~~~~e~qa~~~a~~l~ 1031 (1129)
+||++|++.....+..+..+++.+|..+.
T Consensus 570 gVfAaGD~~~~~~~v~Ai~~G~~AA~~I~ 598 (604)
T PRK13984 570 WLFAGGDIVHGPDIIHGVADGYWAAEGID 598 (604)
T ss_pred CEEEecCcCCchHHHHHHHHHHHHHHHHH
Confidence 99999999876555667788888877653
No 154
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=99.48 E-value=2e-13 Score=167.69 Aligned_cols=261 Identities=16% Similarity=0.168 Sum_probs=146.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccc-cccccccc-cC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTN-LPKDLMEL-CG 816 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~-~~~~~~~~-~~ 816 (1129)
...++|||+|++||++|..|.+.| ++|++||+.+.+||.|.+. +|... .+..... ....+..+ -+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G--~~Vtv~e~~~~~GG~l~~g---------ip~~~--l~~~~~~~~~~~~~~~Gv~ 376 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAG--VQVDVFDRHPEIGGMLTFG---------IPPFK--LDKTVLSQRREIFTAMGID 376 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcC--CcEEEEeCCCCCCCeeecc---------CCccc--CCHHHHHHHHHHHHHCCeE
Confidence 346799999999999999999999 9999999999999998852 32110 0000000 00000000 00
Q ss_pred CCCCCCCCCCCC-------ChhhhhhccCC-CCCCCCCCCCCCCCcEEeecc-----------CCC-----CCCCCCCeE
Q psy12350 817 YGHKGNADKSYI-------GAKDVLENYNH-PIYPEFKGKDMCQIPILHSRD-----------YRT-----PEPFAGKQA 872 (1129)
Q Consensus 817 ~~~~~~~~~~~~-------~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~-----------~~~-----~~~~~gk~V 872 (1129)
+.....-..... ....++.+|+. ++.+.+||.+. .| ++++.+ ... .....||+|
T Consensus 377 ~~~~~~v~~~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~-~g-v~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~v 454 (639)
T PRK12809 377 FHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDA-PG-VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRV 454 (639)
T ss_pred EEcCCccCCcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCcc-CC-cEeHHHHHHHHHHhhccCccccccccccCCCCeE
Confidence 000000000000 01122237765 44577888653 23 333211 111 123468999
Q ss_pred EEEcCCccHHHHHHHHHhcC-CEEEEEecCCCC-ccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--
Q psy12350 873 VVVGSGQSGLDITLDIATTG-KQAVVVGSGQSG-LDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT-- 946 (1129)
Q Consensus 873 vVVG~G~Sg~eiA~~la~~~-~~V~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~-- 946 (1129)
+|||+|.+|+|+|..+.+.| ++||++.+.... ++..+.....+ ...+|++... +.++.
T Consensus 455 vViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~~a----------------~~eGv~~~~~~~~~~i~~~ 518 (639)
T PRK12809 455 VVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVVNA----------------REEGVEFQFNVQPQYIACD 518 (639)
T ss_pred EEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHH----------------HHcCCeEEeccCCEEEEEC
Confidence 99999999999999988887 589999764321 11111000000 0112222221 33332
Q ss_pred CCc----E------------------EecCCc--EeeccEEEEccCccCcC-CCCCCCCCeeecCCcccccc---cceee
Q psy12350 947 PTG----V------------------RFQDGS--YEQVDIILCCTGYSNHY-PFLHESCGIKVVNKNVQPLY---KHTIN 998 (1129)
Q Consensus 947 ~~~----V------------------~~~dG~--~~~~D~VI~aTG~~~~~-~fl~~~~g~~~~~~~~~~ly---~~~~~ 998 (1129)
+++ | ....|+ ++++|.||+|+|++++. .++.. +++++++++..... ...+.
T Consensus 519 ~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~-~gl~~~~~G~i~vd~~~~~~~~ 597 (639)
T PRK12809 519 EDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQG-SGIKLDKWGLIQTGDVGYLPTQ 597 (639)
T ss_pred CCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccc-cCcccCCCCCEEeCCCcccCcc
Confidence 111 1 111232 57999999999999974 45543 67777654432221 12355
Q ss_pred cCCCCcEEEccccccc-hhHHHHHHHHHHHHHHc
Q psy12350 999 IEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~ 1031 (1129)
++.|+||++|++..+. ....+-.|++.+|+.+.
T Consensus 598 Ts~~gVfA~GD~~~g~~~vv~Ai~~Gr~AA~~i~ 631 (639)
T PRK12809 598 THLKKVFAGGDAVHGADLVVTAMAAGRQAARDML 631 (639)
T ss_pred cCCCCEEEcCCCCCCchHHHHHHHHHHHHHHHHH
Confidence 6899999999987653 45777888888777654
No 155
>KOG0399|consensus
Probab=99.47 E-value=6.1e-13 Score=155.45 Aligned_cols=285 Identities=16% Similarity=0.225 Sum_probs=156.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
-++|+|||+|||||+||-.|-+ .|+.|+|+||.+.+||+..|.....
T Consensus 1785 g~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygipnm------------------------------- 1831 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGIPNM------------------------------- 1831 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecCCcc-------------------------------
Confidence 4899999999999999999999 7799999999999999999721100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
..+. .+.+.--+...+-|+ ++..|+++-+- +.. + .-...+| +||+|+
T Consensus 1832 --------kldk-~vv~rrv~ll~~egi--~f~tn~eigk~-----------vs~-----d-~l~~~~d-----aiv~a~ 1878 (2142)
T KOG0399|consen 1832 --------KLDK-FVVQRRVDLLEQEGI--RFVTNTEIGKH-----------VSL-----D-ELKKEND-----AIVLAT 1878 (2142)
T ss_pred --------chhH-HHHHHHHHHHHhhCc--eEEeecccccc-----------ccH-----H-HHhhccC-----eEEEEe
Confidence 1111 244444455555565 66667766321 111 1 1122478 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|. ..|+-.++||- +. +|+|. ..|+..-. ..++...+ .......+
T Consensus 1879 gs-t~prdlpv~gr---d~---------------kgv~fame~l~~nt----------k~lld~~~------d~~~~~~~ 1923 (2142)
T KOG0399|consen 1879 GS-TTPRDLPVPGR---DL---------------KGVHFAMEFLEKNT----------KSLLDSVL------DGNYISAK 1923 (2142)
T ss_pred CC-CCCcCCCCCCc---cc---------------cccHHHHHHHHHhH----------Hhhhcccc------ccceeccC
Confidence 94 45666667662 12 22221 11211000 00000000 11111223
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEcc--------ccCCcccccCCC-----------------
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSH--------HSEHVKKLRFPN----------------- 301 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~--------r~~~~~~~~~~~----------------- 301 (1129)
+|+|+| ||||.+|-|+...-.+.| +.|.-.+ |.+......+|.
T Consensus 1924 gkkviv-----------igggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~ 1992 (2142)
T KOG0399|consen 1924 GKKVIV-----------IGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGS 1992 (2142)
T ss_pred CCeEEE-----------ECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCC
Confidence 455544 799999999988766665 4443322 111111111111
Q ss_pred -----CeEE-------cCCceEEc---------CCc----eEEcC-CCEeecCEEEEcccccccCCCCCCCCCeEeecCc
Q psy12350 302 -----NVVK-------KPDIAELT---------PTG----VRFQD-GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKN 355 (1129)
Q Consensus 302 -----~i~~-------~~~v~~~~---------~~~----v~~~d-g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~ 355 (1129)
.|.. +..|+.++ +.+ +...+ .+.++||.||+|.||-..-+-+-+.+++..+++.
T Consensus 1993 dpr~y~vltk~f~~~~~g~v~gl~~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rs 2072 (2142)
T KOG0399|consen 1993 DPRTYSVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRS 2072 (2142)
T ss_pred CcceeeeeeeeeeccCCCceeeEEEEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccc
Confidence 0100 11122211 011 11111 1245999999999997665555555667766643
Q ss_pred c-cccccccccCCCCCeEEecccccccc--cccccceeeehhhccccccccccc
Q psy12350 356 V-QPLYKHLINIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQPLYKHLINI 406 (1129)
Q Consensus 356 ~-~~l~~~~~~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~ 406 (1129)
. .-.+.. |.++.+.+|..|..+..+- .=.++.+|-.|+-+...+.+.-.+
T Consensus 2073 ni~t~~~~-y~t~v~~vfaagdcrrgqslvvwai~egrq~a~~vd~~~~~~t~l 2125 (2142)
T KOG0399|consen 2073 NILTPKDS-YSTDVAKVFAAGDCRRGQSLVVWAIQEGRQAARQVDELMGGTTDL 2125 (2142)
T ss_pred cccCCCcc-ccccccceeecccccCCceEEEEEehhhhHHHHHHHHHhCCcccC
Confidence 2 334433 7788899999999876432 112356666666665555555544
No 156
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.47 E-value=1.5e-13 Score=176.06 Aligned_cols=260 Identities=15% Similarity=0.114 Sum_probs=157.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccc----------cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTN----------LP 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~----------~~ 808 (1129)
..+++|||+|++||++|..+.+.| ++|+|+|+++.+||.+...... ..|.+.. .....+... ..
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G--~~V~liD~~~~~GG~~~~~~~~---~~g~~~~-~~~~~~~~~l~~~~~v~v~~~ 236 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAG--ARVILVDEQPEAGGSLLSEAET---IDGKPAA-DWAAATVAELTAMPEVTLLPR 236 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCCCCCeeeccccc---cCCccHH-HHHHHHHHHHhcCCCcEEEcC
Confidence 468999999999999999999999 9999999999999988753210 0011100 000000000 00
Q ss_pred cccccccC-------------CCCCCC-----CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEee---ccCCC-CCC
Q psy12350 809 KDLMELCG-------------YGHKGN-----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHS---RDYRT-PEP 866 (1129)
Q Consensus 809 ~~~~~~~~-------------~~~~~~-----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs---~~~~~-~~~ 866 (1129)
.....+.+ ++.... ....+..+..++.+|+.|+.|++||.+. .| ++.. ..+.. ...
T Consensus 237 t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~-pg-V~~~~~~~~~l~~~~~ 314 (985)
T TIGR01372 237 TTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDR-PG-VMLAGAARTYLNRYGV 314 (985)
T ss_pred CEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCC-CC-cEEchHHHHHHHhhCc
Confidence 00000000 000000 0001233445566999999999999754 22 3332 12211 123
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhcCC-EEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 867 FAGKQAVVVGSGQSGLDITLDIATTGK-QAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 867 ~~gk~VvVVG~G~Sg~eiA~~la~~~~-~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
..||+|+|||+|.+|+|+|..|++.|. .|++++..+..... +. ..+. ..+|+++.+ +.
T Consensus 315 ~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~~~~---l~-------------~~L~---~~GV~i~~~~~v~ 375 (985)
T TIGR01372 315 APGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADVSPE---AR-------------AEAR---ELGIEVLTGHVVA 375 (985)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcchhHH---HH-------------HHHH---HcCCEEEcCCeEE
Confidence 468999999999999999999999994 57888764322110 00 0010 125666554 66
Q ss_pred EEeCC----cEEec----CCcEeeccEEEEccCccCcCCCCCCCCCee--ecCCcccccccceeecCCCCcEEEcccccc
Q psy12350 944 ELTPT----GVRFQ----DGSYEQVDIILCCTGYSNHYPFLHESCGIK--VVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013 (1129)
Q Consensus 944 ~v~~~----~V~~~----dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~--~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~ 1013 (1129)
++.++ +|++. +++++++|.|++++|++|+..++.. +|.. .++.. ..+ .-.++.|+||++|++...
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~L~~~-lg~~~~~~~~~--~~~--~~~t~v~gVyaaGD~~g~ 450 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVHLFSQ-RGGKLAWDAAI--AAF--LPGDAVQGCILAGAANGL 450 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhHHHHh-cCCCeeecccc--Cce--ecCCCCCCeEEeeccCCc
Confidence 77553 35554 4567899999999999999876543 4433 33221 111 112468999999998876
Q ss_pred chhHHHHHHHHHHHHHH
Q psy12350 1014 LLFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1014 ~~~~~~e~qa~~~a~~l 1030 (1129)
.....+..+++.++..+
T Consensus 451 ~~~~~A~~eG~~Aa~~i 467 (985)
T TIGR01372 451 FGLAAALADGAAAGAAA 467 (985)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 66667788888777665
No 157
>KOG2495|consensus
Probab=99.46 E-value=5e-14 Score=151.60 Aligned_cols=271 Identities=13% Similarity=0.111 Sum_probs=165.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCC-CccccccCccc-----ccccccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGL-PVHSSMYKSLK-----TNLPKDLME 813 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~-p~~~~~y~~~~-----~~~~~~~~~ 813 (1129)
-.++|+|.|++|.+.++.|-... .+|+|+..++.+==+|... .+.+ |. ..+| +-+..+ .+-.....+
T Consensus 56 k~vVVLGsGW~a~S~lk~ldts~--YdV~vVSPRnyFlFTPLLp---S~~v-GTve~rS-IvEPIr~i~r~k~~~~~y~e 128 (491)
T KOG2495|consen 56 KRVVVLGSGWGAISLLKKLDTSL--YDVTVVSPRNYFLFTPLLP---STTV-GTVELRS-IVEPIRAIARKKNGEVKYLE 128 (491)
T ss_pred ceEEEEcCchHHHHHHHhccccc--cceEEeccccceEEeeccC---Cccc-cceeehh-hhhhHHHHhhccCCCceEEe
Confidence 35689999999999999998777 9999999998876666632 1111 10 0000 000000 000000000
Q ss_pred ccCCCCCCC-----------CC----CCCCChhhhhhccCCCCCCCCCCCCC---CCCcEEeeccCCC------------
Q psy12350 814 LCGYGHKGN-----------AD----KSYIGAKDVLENYNHPIYPEFKGKDM---CQIPILHSRDYRT------------ 863 (1129)
Q Consensus 814 ~~~~~~~~~-----------~~----~~~~~~~~v~~~~~~P~~P~i~G~~~---f~g~~~hs~~~~~------------ 863 (1129)
-.-+..+++ .. -.+...--|.++|..|+.+.+||..+ |--.+-|+.+.+.
T Consensus 129 Aec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~ 208 (491)
T KOG2495|consen 129 AECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELP 208 (491)
T ss_pred cccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcC
Confidence 000001110 00 01111223344999999999999876 2223333333311
Q ss_pred ----CCCCCCCeEEEEcCCccHHHHHHHHHhc--------------CCEEEEEecCCCCccchh-hhhccccEEEEecCC
Q psy12350 864 ----PEPFAGKQAVVVGSGQSGLDITLDIATT--------------GKQAVVVGSGQSGLDITL-DIATRASTVFLSHHS 924 (1129)
Q Consensus 864 ----~~~~~gk~VvVVG~G~Sg~eiA~~la~~--------------~~~V~vv~~~~~~~~~~~-~~~~~~~~~~~~~~~ 924 (1129)
++.-+--++||||||++|+|+|.||+.. --+||+++..+..++|.. .+..++...+..
T Consensus 209 ~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~yae~~f~~--- 285 (491)
T KOG2495|consen 209 GLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYAENQFVR--- 285 (491)
T ss_pred CCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHHHHHhhh---
Confidence 0111123799999999999999999863 236889988887777653 344444433322
Q ss_pred ccccccCCCCCeEEcCC--eeEEeCCcEEecCC----cEeeccEEEEccCccCcCCCCCCCCCeeecCCc--ccccccce
Q psy12350 925 ERVTSLCLPNNVVLKPD--VAELTPTGVRFQDG----SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKN--VQPLYKHT 996 (1129)
Q Consensus 925 ~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG----~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~--~~~ly~~~ 996 (1129)
.+|++..+ ++.++++.++.+++ ++++.-.+||+||..+. |+... +...+++.. ..-....+
T Consensus 286 ---------~~I~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~r-p~~k~-lm~~i~e~~rr~L~vDE~L 354 (491)
T KOG2495|consen 286 ---------DGIDLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGPR-PVIKD-LMKQIDEQGRRGLAVDEWL 354 (491)
T ss_pred ---------ccceeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCCc-hhhhh-HhhcCCccCceeeeeecee
Confidence 25666655 89999988877655 56899999999999986 54432 222222222 22344455
Q ss_pred eecCCCCcEEEccccc-c---chhHHHHHHHHHHHHHHc
Q psy12350 997 INIEHPTMFILGVPRH-T---LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~-~---~~~~~~e~qa~~~a~~l~ 1031 (1129)
..++.+|||+||+|.. . +..++|+.|+.|+|++|.
T Consensus 355 rV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn 393 (491)
T KOG2495|consen 355 RVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFN 393 (491)
T ss_pred eccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHH
Confidence 6679999999999972 2 356899999999999987
No 158
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=99.45 E-value=6e-13 Score=161.74 Aligned_cols=258 Identities=18% Similarity=0.203 Sum_probs=146.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccC-cccccccccccccc-CC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYK-SLKTNLPKDLMELC-GY 817 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~-~~~~~~~~~~~~~~-~~ 817 (1129)
..++|||+|++||.+|..|++.| ++|++||+.+.+||.+.+. +|.. .+. .........+..+. ++
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G--~~V~v~e~~~~~GG~l~~g---------ip~~--~~~~~~~~~~l~~~~~~Gv~~ 204 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMG--HAVTIFEAGPKLGGMMRYG---------IPAY--RLPREVLDAEIQRILDLGVEV 204 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCeeeec---------CCCc--cCCHHHHHHHHHHHHHCCCEE
Confidence 45789999999999999999999 8999999999999988742 2210 000 00000000000000 00
Q ss_pred CCCCCCCCCCC-------ChhhhhhccCCC-CCCCCCCCCCCCCcEEeeccCC-----CCCCCCCCeEEEEcCCccHHHH
Q psy12350 818 GHKGNADKSYI-------GAKDVLENYNHP-IYPEFKGKDMCQIPILHSRDYR-----TPEPFAGKQAVVVGSGQSGLDI 884 (1129)
Q Consensus 818 ~~~~~~~~~~~-------~~~~v~~~~~~P-~~P~i~G~~~f~g~~~hs~~~~-----~~~~~~gk~VvVVG~G~Sg~ei 884 (1129)
........... ....+..+|+.+ ..+.++|.+. .| +++...+. ......+|+|+|||+|.+|+|+
T Consensus 205 ~~~~~~~~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~-~g-v~~~~~~l~~~~~~~~~~~gk~v~ViGgg~~a~d~ 282 (564)
T PRK12771 205 RLGVRVGEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDA-AG-VLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDA 282 (564)
T ss_pred EeCCEECCcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCcc-CC-cEEHHHHHHHhhccCCcCCCCCEEEECChHHHHHH
Confidence 00000000000 011222266653 4456777542 23 33322221 1134568999999999999999
Q ss_pred HHHHHhcC-CEEEEEecCCCC-ccc-hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCc----------
Q psy12350 885 TLDIATTG-KQAVVVGSGQSG-LDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTG---------- 949 (1129)
Q Consensus 885 A~~la~~~-~~V~vv~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~---------- 949 (1129)
+..+.+.+ ++|+++.+.+.. ++. ...+... ...+|++.. .+.++..+.
T Consensus 283 a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~a-----------------~~~GVki~~~~~~~~i~~~~~~~~~v~~~~ 345 (564)
T PRK12771 283 ARTARRLGAEEVTIVYRRTREDMPAHDEEIEEA-----------------LREGVEINWLRTPVEIEGDENGATGLRVIT 345 (564)
T ss_pred HHHHHHcCCCEEEEEEecCcccCCCCHHHHHHH-----------------HHcCCEEEecCCcEEEEcCCCCEEEEEEEE
Confidence 99888887 778888764321 110 0000000 011233322 133332211
Q ss_pred EEe----c-------CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-ch
Q psy12350 950 VRF----Q-------DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LL 1015 (1129)
Q Consensus 950 V~~----~-------dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~ 1015 (1129)
+.+ . +| .++++|.||+|+|..++.+++.+..++. ++.+...+....+.++.||||++|++..+ ..
T Consensus 346 ~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g~~~ 424 (564)
T PRK12771 346 VEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPGPRT 424 (564)
T ss_pred EEecccCCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCCchH
Confidence 111 1 23 3579999999999999988887534565 44444444444567799999999998764 35
Q ss_pred hHHHHHHHHHHHHHH
Q psy12350 1016 FNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1016 ~~~~e~qa~~~a~~l 1030 (1129)
...+..|++.+|..+
T Consensus 425 v~~Av~~G~~aA~~i 439 (564)
T PRK12771 425 VTTAIGHGKKAARNI 439 (564)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567777887777654
No 159
>KOG0404|consensus
Probab=99.44 E-value=1.7e-13 Score=133.86 Aligned_cols=251 Identities=16% Similarity=0.152 Sum_probs=155.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc---cC-CcCcccccC----CCCCCCCCCCCccccccCcccccccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ---AD-NIGGTWLYT----EHIGCDQYGLPVHSSMYKSLKTNLPK-- 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~---~~-~~GG~w~~~----~~~g~~~~g~p~~~~~y~~~~~~~~~-- 809 (1129)
-.++|||+||++..+|+++.+.. ++.++||- ++ ..||+.-.. .+||-.+ |+. ...+.+.++.+..+
T Consensus 9 e~v~IiGSGPAa~tAAiYaarae--lkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPd-gi~-G~~l~d~mrkqs~r~G 84 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAE--LKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPD-GIT-GPELMDKMRKQSERFG 84 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcc--cCceEEeeeeccCcCCCceeeeeeccccCCCCCc-ccc-cHHHHHHHHHHHHhhc
Confidence 36789999999999999999988 99999994 11 235554321 2333211 110 00011111111110
Q ss_pred --------ccccccCCCCCCC-CCCCCCChhhhhhccCCCCCCCCCCC-CC-CCCcEEeeccCCCCCC--CCCCeEEEEc
Q psy12350 810 --------DLMELCGYGHKGN-ADKSYIGAKDVLENYNHPIYPEFKGK-DM-CQIPILHSRDYRTPEP--FAGKQAVVVG 876 (1129)
Q Consensus 810 --------~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~P~~P~i~G~-~~-f~g~~~hs~~~~~~~~--~~gk~VvVVG 876 (1129)
....++.-||.-- +......+..++.+|...+...+||. +. |..+-+.++..++... |++|-.+|||
T Consensus 85 t~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIG 164 (322)
T KOG0404|consen 85 TEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIG 164 (322)
T ss_pred ceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEc
Confidence 0111122222110 01122233444559999998889987 43 7777788888888655 8999999999
Q ss_pred CCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----c
Q psy12350 877 SGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----G 949 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~ 949 (1129)
||.|++|-|..|.+.+++|+++.|.... ++++.+..+. ....+|++..+ +.+.-++ +
T Consensus 165 GGDsA~EEA~fLtkyaskVyii~Rrd~f---------RAs~~Mq~ra-------~~npnI~v~~nt~~~ea~gd~~~l~~ 228 (322)
T KOG0404|consen 165 GGDSAMEEALFLTKYASKVYIIHRRDHF---------RASKIMQQRA-------EKNPNIEVLYNTVAVEALGDGKLLNG 228 (322)
T ss_pred CcHHHHHHHHHHHhhccEEEEEEEhhhh---------hHHHHHHHHH-------hcCCCeEEEechhhhhhccCcccccc
Confidence 9999999999999999999999874321 1111111110 01225555544 2222111 1
Q ss_pred EE-----ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc
Q psy12350 950 VR-----FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012 (1129)
Q Consensus 950 V~-----~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~ 1012 (1129)
+. ..+-+.++++-++++.|-.|+..||+. .++++.++....-..+..+++|++|+.|+++.
T Consensus 229 l~ikn~~tge~~dl~v~GlFf~IGH~Pat~~l~g--qve~d~~GYi~t~pgts~TsvpG~FAAGDVqD 294 (322)
T KOG0404|consen 229 LRIKNVKTGEETDLPVSGLFFAIGHSPATKFLKG--QVELDEDGYIVTRPGTSLTSVPGVFAAGDVQD 294 (322)
T ss_pred eEEEecccCcccccccceeEEEecCCchhhHhcC--ceeeccCceEEeccCcccccccceeeccccch
Confidence 22 223345899999999999999999986 56777766555555777789999999999874
No 160
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.4e-13 Score=139.41 Aligned_cols=245 Identities=18% Similarity=0.246 Sum_probs=155.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCC-CCC------------ccccccCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQY-GLP------------VHSSMYKSLKTN 806 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~-g~p------------~~~~~y~~~~~~ 806 (1129)
.+++|+|+||+|-++|.+..+.| .+.-++- +++||+-...-... .+ ++| .|..-|+--..|
T Consensus 212 yDVLvVGgGPAgaaAAiYaARKG--iRTGl~a--erfGGQvldT~~IE--NfIsv~~teGpkl~~ale~Hv~~Y~vDimn 285 (520)
T COG3634 212 YDVLVVGGGPAGAAAAIYAARKG--IRTGLVA--ERFGGQVLDTMGIE--NFISVPETEGPKLAAALEAHVKQYDVDVMN 285 (520)
T ss_pred ceEEEEcCCcchhHHHHHHHhhc--chhhhhh--hhhCCeeccccchh--heeccccccchHHHHHHHHHHhhcCchhhh
Confidence 46789999999999999999999 6655542 45888766331100 00 000 011112211111
Q ss_pred cccccccccCCCCC--C-------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcC
Q psy12350 807 LPKDLMELCGYGHK--G-------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGS 877 (1129)
Q Consensus 807 ~~~~~~~~~~~~~~--~-------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~ 877 (1129)
..+... + .|.. . ........+..++++|.+++-.++||-++|+.+-+..|..++..-|+||+|+||||
T Consensus 286 ~qra~~-l--~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF~gK~VAVIGG 362 (520)
T COG3634 286 LQRASK-L--EPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGG 362 (520)
T ss_pred hhhhhc-c--eecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCcccCCceEEEECC
Confidence 111000 0 0000 0 00122233444555999999999999999988878888888888899999999999
Q ss_pred CccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-----E
Q psy12350 878 GQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-----V 950 (1129)
Q Consensus 878 G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-----V 950 (1129)
|+||+|.|-+|+....+||+++..+.. .+..+ +.++. . .+ .||++..+ -+++.+++ +
T Consensus 363 GNSGvEAAIDLAGiv~hVtllEF~~eL---------kAD~V-Lq~kl----~-sl-~Nv~ii~na~Ttei~Gdg~kV~Gl 426 (520)
T COG3634 363 GNSGVEAAIDLAGIVEHVTLLEFAPEL---------KADAV-LQDKL----R-SL-PNVTIITNAQTTEVKGDGDKVTGL 426 (520)
T ss_pred CcchHHHHHhHHhhhheeeeeecchhh---------hhHHH-HHHHH----h-cC-CCcEEEecceeeEEecCCceecce
Confidence 999999999999999999999763311 11111 11110 0 01 27777766 56676653 4
Q ss_pred Eec---CCcE--eeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc
Q psy12350 951 RFQ---DGSY--EQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH 1012 (1129)
Q Consensus 951 ~~~---dG~~--~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~ 1012 (1129)
... +|+. ++-+-|++-.|.-||+.||+.. ++++.++-.-+ ...-+++.|++|+.|++..
T Consensus 427 ~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~--vel~~rGEIiv-D~~g~TsvpGvFAAGD~T~ 490 (520)
T COG3634 427 EYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGA--VELNRRGEIIV-DARGETNVPGVFAAGDCTT 490 (520)
T ss_pred EEEeccCCceeEEEeeeeEEEEecccChhHhhch--hhcCcCccEEE-ecCCCcCCCceeecCcccC
Confidence 443 3443 5788899999999999999874 45555443322 2223568999999999864
No 161
>KOG1800|consensus
Probab=99.40 E-value=3.3e-12 Score=135.28 Aligned_cols=45 Identities=20% Similarity=0.309 Sum_probs=41.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+++|||||+||||+.+|..|+++..+.+|+||||.+.++|+.+|
T Consensus 19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 346999999999999999999997778999999999999999997
No 162
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=99.37 E-value=2.9e-12 Score=155.51 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=35.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..++|+|||||||||+||.+|++ .|++|+|||+.+..|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccccccccc
Confidence 45899999999999999999999 67999999997765554
No 163
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.36 E-value=2.3e-12 Score=148.35 Aligned_cols=106 Identities=22% Similarity=0.352 Sum_probs=76.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
-++|+|||||||||+||..|.+ .|++|++||+.+.+||...|. .+
T Consensus 123 g~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yG------------------------------IP--- 167 (457)
T COG0493 123 GKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYG------------------------------IP--- 167 (457)
T ss_pred CCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEec------------------------------Cc---
Confidence 3899999999999999999999 679999999999999999961 11
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeee-eeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQ-PLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.|....++.+...++.++.|+ .+++|++|- .+.. .. -...|| +|++|
T Consensus 168 -------~~kl~k~i~d~~i~~l~~~Gv--~~~~~~~vG~~it~------------~~------L~~e~D-----av~l~ 215 (457)
T COG0493 168 -------DFKLPKDILDRRLELLERSGV--EFKLNVRVGRDITL------------EE------LLKEYD-----AVFLA 215 (457)
T ss_pred -------hhhccchHHHHHHHHHHHcCe--EEEEcceECCcCCH------------HH------HHHhhC-----EEEEe
Confidence 222233566666667777774 888888874 2211 11 112379 99999
Q ss_pred cccCCCCCccccccc
Q psy12350 168 QGHVTLPSKAEMLAD 182 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~ 182 (1129)
||. ..|+..++||.
T Consensus 216 ~G~-~~~~~l~i~g~ 229 (457)
T COG0493 216 TGA-GKPRPLDIPGE 229 (457)
T ss_pred ccc-cCCCCCCCCCc
Confidence 994 45666667663
No 164
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.35 E-value=1.6e-11 Score=132.66 Aligned_cols=145 Identities=18% Similarity=0.189 Sum_probs=86.4
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccc-cCCc------
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKT-NLPK------ 79 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~-~~~~------ 79 (1129)
+...|++.||-||+-|+.|..|.+.+ +.++..+||.+.. .+.+|..-.|+..+.+....|.+ ..|.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~-~~~~lFLerkp~F------~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFL 75 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHS-GLKSLFLERKPDF------SWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFL 75 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhcccc-CcceEEEecCCCC------CcCCCcccCCccccccchhhhccccCCCCchHHH
Confidence 34689999999999999999988853 4789999998753 33333321121111111111111 1111
Q ss_pred -------cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCC-CceEEeccccCcc
Q psy12350 80 -------EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEH-PSMCIIGIPRDTV 151 (1129)
Q Consensus 80 -------~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~-~~~~~~~~~~~~~ 151 (1129)
.+++|-.+ ..-++.+.|+.+|++..|.++ +.++|+++|+.|... ..+. ....+.+ ...
T Consensus 76 NYL~~h~RLy~Fl~~------e~f~i~R~Ey~dY~~Waa~~l---~~~rfg~~V~~i~~~--~~d~~~~~~~~t---~~~ 141 (436)
T COG3486 76 NYLHEHGRLYEFLNY------ETFHIPRREYNDYCQWAASQL---PSLRFGEEVTDISSL--DGDAVVRLFVVT---ANG 141 (436)
T ss_pred HHHHHcchHhhhhhh------hcccccHHHHHHHHHHHHhhC---CccccCCeecccccc--CCcceeEEEEEc---CCC
Confidence 22222211 234778999999999988887 479999999977321 1111 1111221 111
Q ss_pred ceEEecceeeeEEEEecccCCCCCcccc
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVTLPSKAEM 179 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~~p~~p~i 179 (1129)
. .|.++ .|||++| ..|.+|+.
T Consensus 142 ~--~y~ar---~lVlg~G--~~P~IP~~ 162 (436)
T COG3486 142 T--VYRAR---NLVLGVG--TQPYIPPC 162 (436)
T ss_pred c--EEEee---eEEEccC--CCcCCChH
Confidence 1 34433 8999999 89999863
No 165
>PLN02852 ferredoxin-NADP+ reductase
Probab=99.33 E-value=7.8e-12 Score=145.59 Aligned_cols=141 Identities=16% Similarity=0.153 Sum_probs=82.9
Q ss_pred ccCccccccCCchhhHHHHHHh--hCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc---cCcccccccccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTE--AGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM---YKSLKTNLPKDLME 813 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~--~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~---y~~~~~~~~~~~~~ 813 (1129)
...++|||+||+|+.+|..|++ .| ++|+|||+.+.+||.+.+...|.. +..... +..+..+ ..+.-
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g--~~Vtv~E~~p~pgGlvr~gvaP~~-----~~~k~v~~~~~~~~~~--~~v~~ 96 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDG--ARVDIIERLPTPFGLVRSGVAPDH-----PETKNVTNQFSRVATD--DRVSF 96 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCC--CeEEEEecCCCCcceEeeccCCCc-----chhHHHHHHHHHHHHH--CCeEE
Confidence 4468999999999999999987 56 999999999999998885321210 000000 0000000 00000
Q ss_pred ccCCCCCCC----CCCCCCChhhhhhccCCC-CCCCCCCCCCCCCcEEeeccCC----------CC--CCCCCCeEEEEc
Q psy12350 814 LCGYGHKGN----ADKSYIGAKDVLENYNHP-IYPEFKGKDMCQIPILHSRDYR----------TP--EPFAGKQAVVVG 876 (1129)
Q Consensus 814 ~~~~~~~~~----~~~~~~~~~~v~~~~~~P-~~P~i~G~~~f~g~~~hs~~~~----------~~--~~~~gk~VvVVG 876 (1129)
+.+..+..+ ... ...+..++.+|+.+ +.+++||.+. ..++.+.++. .. ....||+|+|||
T Consensus 97 ~~nv~vg~dvtl~~L~-~~yDaVIlAtGa~~~~~l~IpG~d~--~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIG 173 (491)
T PLN02852 97 FGNVTLGRDVSLSELR-DLYHVVVLAYGAESDRRLGIPGEDL--PGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLG 173 (491)
T ss_pred EcCEEECccccHHHHh-hhCCEEEEecCCCCCCCCCCCCCCC--CCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEEC
Confidence 111111111 000 01123344488875 7788999653 2345444431 00 113589999999
Q ss_pred CCccHHHHHHHHHhc
Q psy12350 877 SGQSGLDITLDIATT 891 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~ 891 (1129)
+|++|+|+|..|++.
T Consensus 174 gGnvAlD~Ar~L~~~ 188 (491)
T PLN02852 174 QGNVALDCARILLRP 188 (491)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998774
No 166
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=99.28 E-value=2.9e-12 Score=147.69 Aligned_cols=259 Identities=20% Similarity=0.288 Sum_probs=154.5
Q ss_pred ccccccCCchhhHHHHHHhhCC-CcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCc------cccccccccccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGN-GFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKS------LKTNLPKDLMEL 814 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~-~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~------~~~~~~~~~~~~ 814 (1129)
++|||.|++|..+..++++..+ .+++++|-.++++. |++ ..-++..+. ...+.. ..++-
T Consensus 6 lvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~n----Y~R---------i~Ls~vl~~~~~~edi~l~~~-dwy~~ 71 (793)
T COG1251 6 LVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPN----YNR---------ILLSSVLAGEKTAEDISLNRN-DWYEE 71 (793)
T ss_pred EEEEecccchhhHHHHHHhcCcccceEEEeccCCCcc----ccc---------eeeccccCCCccHHHHhccch-hhHHH
Confidence 4799999999999999988554 37899998776532 221 101111111 000000 00000
Q ss_pred cCC------C----CCC------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCC-----CCCCeEE
Q psy12350 815 CGY------G----HKG------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEP-----FAGKQAV 873 (1129)
Q Consensus 815 ~~~------~----~~~------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~-----~~gk~Vv 873 (1129)
.+. + .+. +.........-++++||.|.+|++||.+.+. ++--.++.+.+. -..++-+
T Consensus 72 ~~i~L~~~~~v~~idr~~k~V~t~~g~~~~YDkLilATGS~pfi~PiPG~~~~~--v~~~R~i~D~~am~~~ar~~~~av 149 (793)
T COG1251 72 NGITLYTGEKVIQIDRANKVVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPG--VFVYRTIDDVEAMLDCARNKKKAV 149 (793)
T ss_pred cCcEEEcCCeeEEeccCcceEEccCCcEeecceeEEecCccccccCCCCCCCCC--eeEEecHHHHHHHHHHHhccCCcE
Confidence 000 0 000 0011112223344499999999999987643 333333332211 1346689
Q ss_pred EEcCCccHHHHHHHHHhcCCEEEEEecCCCCccch--hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe---
Q psy12350 874 VVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT--LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT--- 946 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~--- 946 (1129)
|||||.-|+|.|..|.+.|-+|+|++..+.+.... +.-....++.+ . ..++++..+ .+++.
T Consensus 150 VIGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~l-e-----------~~Gi~~~l~~~t~ei~g~~ 217 (793)
T COG1251 150 VIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKL-E-----------DLGIKVLLEKNTEEIVGED 217 (793)
T ss_pred EEccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHH-H-----------hhcceeecccchhhhhcCc
Confidence 99999999999999999999999998766543211 10000000000 0 012333222 22222
Q ss_pred -CCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc------cchhHHH
Q psy12350 947 -PTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH------TLLFNLF 1019 (1129)
Q Consensus 947 -~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~------~~~~~~~ 1019 (1129)
..++.|+||+.+++|.||+|+|++|+..+- .+.|+..+...+.+.|.++ ++|+||++|-+.. +..+|..
T Consensus 218 ~~~~vr~~DG~~i~ad~VV~a~GIrPn~ela-~~aGlavnrGIvvnd~mqT---sdpdIYAvGEcae~~g~~yGLVaP~y 293 (793)
T COG1251 218 KVEGVRFADGTEIPADLVVMAVGIRPNDELA-KEAGLAVNRGIVVNDYMQT---SDPDIYAVGECAEHRGKVYGLVAPLY 293 (793)
T ss_pred ceeeEeecCCCcccceeEEEecccccccHhH-HhcCcCcCCCeeecccccc---cCCCeeehhhHHHhcCccceehhHHH
Confidence 245999999999999999999999997644 4478888775544555554 8999999998753 1234555
Q ss_pred HHHHHHHHHHHcCC
Q psy12350 1020 DLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1020 e~qa~~~a~~l~g~ 1033 (1129)
| ||+.+|..+.|.
T Consensus 294 e-q~~v~a~hl~~~ 306 (793)
T COG1251 294 E-QAKVLADHLCGG 306 (793)
T ss_pred H-HHHHHHHHhccC
Confidence 4 799999988865
No 167
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=99.27 E-value=1.5e-11 Score=145.38 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=83.7
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccC-CC--------------CeEEcCCceEEcCCc-------eEEcCC
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF-PN--------------NVVKKPDIAELTPTG-------VRFQDG 322 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~-~~--------------~i~~~~~v~~~~~~~-------v~~~dg 322 (1129)
+|+|+.|+|+|..++..|.+|++++..++++.... +. ++..+..+.+++.+. +...++
T Consensus 142 vG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 221 (415)
T COG0446 142 VGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDG 221 (415)
T ss_pred ECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcceeeEEEEeCC
Confidence 79999999999999999999999999988766543 22 356677888887642 477788
Q ss_pred CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc
Q psy12350 323 SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP 381 (1129)
Q Consensus 323 ~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~ 381 (1129)
..+++|.+++++|.+++..+..+...........+...+.+....++++|.+|.....+
T Consensus 222 ~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~ 280 (415)
T COG0446 222 EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIP 280 (415)
T ss_pred cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeee
Confidence 89999999999999998555543320122223333333333322578899999875543
No 168
>PTZ00188 adrenodoxin reductase; Provisional
Probab=99.27 E-value=2.8e-11 Score=137.92 Aligned_cols=44 Identities=27% Similarity=0.446 Sum_probs=38.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||||||+||++|+.. .+++|+||||.+.+||+++|
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEE
Confidence 457999999999999999987532 47999999999999999996
No 169
>KOG0399|consensus
Probab=99.17 E-value=2.4e-10 Score=134.34 Aligned_cols=290 Identities=19% Similarity=0.233 Sum_probs=152.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
.-.++|||+||+||+||.+|-+.| +.|+|+||.+++||...| |||--. .+....+....++.-....
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~g--h~v~vyer~dr~ggll~y---------gipnmk--ldk~vv~rrv~ll~~egi~ 1851 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAG--HTVTVYERSDRVGGLLMY---------GIPNMK--LDKFVVQRRVDLLEQEGIR 1851 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcC--cEEEEEEecCCcCceeee---------cCCccc--hhHHHHHHHHHHHHhhCce
Confidence 345899999999999999999999 999999999999999885 554210 1111111111111111111
Q ss_pred C--CCCCCCCCCChhh--------hhhccC-CCCCCCCCCCCCCCC-----cEEeecc--C------CCCCCCCCCeEEE
Q psy12350 819 H--KGNADKSYIGAKD--------VLENYN-HPIYPEFKGKDMCQI-----PILHSRD--Y------RTPEPFAGKQAVV 874 (1129)
Q Consensus 819 ~--~~~~~~~~~~~~~--------v~~~~~-~P~~P~i~G~~~f~g-----~~~hs~~--~------~~~~~~~gk~VvV 874 (1129)
+ ..+ .....+-.+ |+.+|+ .|+-.++||-+. +| ..+|... . ....+.+||+|+|
T Consensus 1852 f~tn~e-igk~vs~d~l~~~~daiv~a~gst~prdlpv~grd~-kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkviv 1929 (2142)
T KOG0399|consen 1852 FVTNTE-IGKHVSLDELKKENDAIVLATGSTTPRDLPVPGRDL-KGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIV 1929 (2142)
T ss_pred EEeecc-ccccccHHHHhhccCeEEEEeCCCCCcCCCCCCccc-cccHHHHHHHHHhHHhhhccccccceeccCCCeEEE
Confidence 1 111 111122222 222554 688888999764 22 1222110 0 1113457999999
Q ss_pred EcCCccHHHHHHHHHhcCC-EEEEEecCCCCcc---chhhhhcc--ccEEEEecC-----C------ccccccCC----C
Q psy12350 875 VGSGQSGLDITLDIATTGK-QAVVVGSGQSGLD---ITLDIATR--ASTVFLSHH-----S------ERVTSLCL----P 933 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~-~V~vv~~~~~~~~---~~~~~~~~--~~~~~~~~~-----~------~~~~~~~~----~ 933 (1129)
||||.+|.|+...-.++|+ +|.-++--+.+-+ ..-++.++ ..++-..+. + ...+...+ .
T Consensus 1930 igggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~f~~~~~ 2009 (2142)
T KOG0399|consen 1930 IGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKRFIGDDN 2009 (2142)
T ss_pred ECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeeeeeccCC
Confidence 9999999999877777765 4443432111100 00001111 111111110 0 00000000 1
Q ss_pred CCeEEcCCeeEE----eCCc----EEecCCc-EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCc
Q psy12350 934 NNVVLKPDVAEL----TPTG----VRFQDGS-YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTM 1004 (1129)
Q Consensus 934 ~~V~~~~~i~~v----~~~~----V~~~dG~-~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l 1004 (1129)
++|+-.. +.++ ++.| ++..+.+ .+++|.||+|.||----+-+.+.++++.+.+.....-...+.++.+.+
T Consensus 2010 g~v~gl~-~vrvew~k~~~g~w~~~ei~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~~~y~t~v~~v 2088 (2142)
T KOG0399|consen 2010 GNVTGLE-TVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPKDSYSTDVAKV 2088 (2142)
T ss_pred CceeeEE-EEEEEEEecCCCceEEEEcCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCCccccccccce
Confidence 1221111 1222 1222 2222333 369999999999976434344445566554433322223367789999
Q ss_pred EEEccccccc---hh--HHHHHHHHHHHHHHcCCCCCCCHHHHHH
Q psy12350 1005 FILGVPRHTL---LF--NLFDLQVRLFQQLMQGHITLPSKEEMLA 1044 (1129)
Q Consensus 1005 ~~iG~~~~~~---~~--~~~e~qa~~~a~~l~g~~~lp~~~~~~~ 1044 (1129)
|+.|++..+. .| +.....|+-+-..+.|+..+|...-..+
T Consensus 2089 faagdcrrgqslvvwai~egrq~a~~vd~~~~~~t~l~~~ggiv~ 2133 (2142)
T KOG0399|consen 2089 FAAGDCRRGQSLVVWAIQEGRQAARQVDELMGGTTDLPGDGGIVQ 2133 (2142)
T ss_pred eecccccCCceEEEEEehhhhHHHHHHHHHhCCcccCCCCCchhh
Confidence 9999998652 33 4444555666666777777887654433
No 170
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=99.02 E-value=8e-10 Score=127.52 Aligned_cols=274 Identities=20% Similarity=0.186 Sum_probs=138.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
..|+|||+||+||++|..|.+.| ++|++||+.+..||.-.| |||.... +.-......+.++-....+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G--~~Vtv~e~~~~~GGll~y---------GIP~~kl--~k~i~d~~i~~l~~~Gv~~ 190 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAG--HDVTVFERVALDGGLLLY---------GIPDFKL--PKDILDRRLELLERSGVEF 190 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCC--CeEEEeCCcCCCceeEEe---------cCchhhc--cchHHHHHHHHHHHcCeEE
Confidence 45689999999999999999999 999999999999998885 5553211 1000000000011011111
Q ss_pred CCCC-CCCCCChhhhhh--------cc-CCCCCCCCCCCCCCCCcEEeeccCC--------------CCCCCCCCeEEEE
Q psy12350 820 KGNA-DKSYIGAKDVLE--------NY-NHPIYPEFKGKDMCQIPILHSRDYR--------------TPEPFAGKQAVVV 875 (1129)
Q Consensus 820 ~~~~-~~~~~~~~~v~~--------~~-~~P~~P~i~G~~~f~g~~~hs~~~~--------------~~~~~~gk~VvVV 875 (1129)
.... ...-.+-+++++ +| ..|+..++||.+. ..+..+.+|. ......||+|+||
T Consensus 191 ~~~~~vG~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~--~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVI 268 (457)
T COG0493 191 KLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDA--KGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVI 268 (457)
T ss_pred EEcceECCcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCC--CcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEE
Confidence 1100 000112222222 33 4677778888763 2233333331 1122356999999
Q ss_pred cCCccHHHHHHHHHhcCC-EEEEEecCCCCccchhhhhccccEEEEe-cCCc--cc--------cccCCCCCeEEcCC--
Q psy12350 876 GSGQSGLDITLDIATTGK-QAVVVGSGQSGLDITLDIATRASTVFLS-HHSE--RV--------TSLCLPNNVVLKPD-- 941 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~-~V~vv~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~--------~~~~~~~~V~~~~~-- 941 (1129)
|+|.+++|++....++|+ +|+.+.+......+. .+..++....+. .... +. +...-.++|.-...
T Consensus 269 GgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~-~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~ 347 (457)
T COG0493 269 GGGDTAMDCAGTALRLGAKSVTCFYREDRDDETN-EWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGR 347 (457)
T ss_pred CCCCCHHHHHHHHhhcCCeEEEEeccccccccCC-cccccchhhhhhhhhhcCCcccccCCceeEeecCCCcEeeeeccc
Confidence 999999999988888876 777774221110110 001111100000 0000 00 00000112221100
Q ss_pred eeEE---eC----CcEEecCCc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEcccc
Q psy12350 942 VAEL---TP----TGVRFQDGS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPR 1011 (1129)
Q Consensus 942 i~~v---~~----~~V~~~dG~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~ 1011 (1129)
+... .+ .-+.. .|+ .+++|.|+.|.|+.++..... ...++..+..+...+-.....++.|++|+-|+..
T Consensus 348 ~~~~~~~~~~~r~~p~~v-~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~gD~~ 426 (457)
T COG0493 348 VEPGEYVDGWGRRGPVGV-IGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAGGDAV 426 (457)
T ss_pred ccccCcccccccccCccc-cCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeCceec
Confidence 0000 00 00222 233 359999999999999855432 1123444443322222222256889999999987
Q ss_pred cc-chhHHHHHHHHHHHHHH
Q psy12350 1012 HT-LLFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1012 ~~-~~~~~~e~qa~~~a~~l 1030 (1129)
.+ +..-.+..++|-+|+.+
T Consensus 427 ~g~~~vv~ai~eGr~aak~i 446 (457)
T COG0493 427 RGAALVVWAIAEGREAAKAI 446 (457)
T ss_pred cchhhhhhHHhhchHHHHhh
Confidence 64 33444555555555444
No 171
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.99 E-value=1.1e-09 Score=119.20 Aligned_cols=139 Identities=17% Similarity=0.233 Sum_probs=93.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC--------ceEecCCCCCCCCCCCCccCcccccccccCC--
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG--------GTWVYTEQTGRDQYGLPVHSSMYKSLKTNLP-- 78 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G--------G~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~-- 78 (1129)
.++|+|||||||||.||..+.+ .|.+|+|||+.+.+| |-|+.++... ++.+..+.|
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~------------~~~~ls~~p~~ 68 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA------------PDEFLSRNPGN 68 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccceeEecCCCCcccccccc------------HHHHHHhCCCc
Confidence 4799999999999999999999 779999999999885 6676655322 334444444
Q ss_pred -cccc-ccCCC--------------CCCC-CCCCCCC---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCC
Q psy12350 79 -KEIM-ELSGY--------------HHKG-HPDKSYI---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEH 138 (1129)
Q Consensus 79 -~~~~-~~~d~--------------~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~ 138 (1129)
+.+. .++.| ++.. ...+-|| +.+++++-+..-+++.|+ .++++++|.++.+..
T Consensus 69 ~~fl~sal~~ft~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV--~i~~~~~v~~v~~~~----- 141 (408)
T COG2081 69 GHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGV--TIRTRSRVSSVEKDD----- 141 (408)
T ss_pred chHHHHHHHhCCHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCc--EEEecceEEeEEecC-----
Confidence 2111 11111 1111 1123455 477888888888888877 899999999998732
Q ss_pred CceEEeccccCccceEEecceeeeEEEEecccCCCCCc
Q psy12350 139 PSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSK 176 (1129)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~~ 176 (1129)
....+. ......+.+| .||||||.-|-|++
T Consensus 142 ~~f~l~---t~~g~~i~~d-----~lilAtGG~S~P~l 171 (408)
T COG2081 142 SGFRLD---TSSGETVKCD-----SLILATGGKSWPKL 171 (408)
T ss_pred ceEEEE---cCCCCEEEcc-----EEEEecCCcCCCCC
Confidence 112222 2222356788 99999997776654
No 172
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.95 E-value=2e-09 Score=131.23 Aligned_cols=143 Identities=15% Similarity=0.194 Sum_probs=81.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc---------cc------cCCC---C-CCCCCCCCcccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT---------WL------YTEH---I-GCDQYGLPVHSSMY 800 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~---------w~------~~~~---~-g~~~~g~p~~~~~y 800 (1129)
..|+|||+||+|+++|..|.+.| ++|++||+.+..|+. |. +... + |...||||.. |
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~G--h~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGIp~R---~ 458 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSG--HNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGITVR---W 458 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCC--CeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCcccc---c
Confidence 46799999999999999999999 999999987655443 11 1111 1 3445666621 1
Q ss_pred Ccccccccccc------ccc-cCCCCCCC----CCCCCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCCC----
Q psy12350 801 KSLKTNLPKDL------MEL-CGYGHKGN----ADKSYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRTP---- 864 (1129)
Q Consensus 801 ~~~~~~~~~~~------~~~-~~~~~~~~----~~~~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~~---- 864 (1129)
..-.......+ ..| .+..+..+ .....-....++.+|+ .|+.+++||.+. ..++.+.++...
T Consensus 459 ~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda--~GV~sA~DfL~~l~~~ 536 (1028)
T PRK06567 459 DKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEA--KGVKTASDFLMTLQSG 536 (1028)
T ss_pred hHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccC--CCeEEHHHHHHHHhhc
Confidence 11000000000 000 01111110 0000111223334888 799999999764 335554443111
Q ss_pred --------CC-CCCCeEEEEcCCccHHHHHHHHH
Q psy12350 865 --------EP-FAGKQAVVVGSGQSGLDITLDIA 889 (1129)
Q Consensus 865 --------~~-~~gk~VvVVG~G~Sg~eiA~~la 889 (1129)
.+ ..|++|||||||++|+|+|....
T Consensus 537 ~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAl 570 (1028)
T PRK06567 537 GAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESL 570 (1028)
T ss_pred ccccccccCcccCCCCEEEEcCcHHHHHHHHHHH
Confidence 11 14789999999999999998554
No 173
>KOG1346|consensus
Probab=98.93 E-value=2.3e-09 Score=114.54 Aligned_cols=137 Identities=12% Similarity=0.174 Sum_probs=86.1
Q ss_pred CCCCCCcccchhhhccc----ccEEEEccccCCcccccCCC---------------CeEEcCCceEEcCC----ceEEcC
Q psy12350 265 AANGPSGLDITHDISTE----ATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELTPT----GVRFQD 321 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~----~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~~~----~v~~~d 321 (1129)
||+|..|-|+|+.|.+. |.+|+-+-.....+...+|+ ++..+..|.++... .+.++|
T Consensus 353 iGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~~nl~lkL~d 432 (659)
T KOG1346|consen 353 IGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCCKNLVLKLSD 432 (659)
T ss_pred EcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhccceEEEecC
Confidence 79999999999998765 44666654333222222222 45556666666432 267889
Q ss_pred CCEeecCEEEEcccccccCCCCCCCCCeEeecCcc-cccccccccCCCCCeEEecccccccccccccceeeehhhccccc
Q psy12350 322 GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNV-QPLYKHLINIEHPSMCIIGYTYRYPFLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 322 g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~p~l~~~G~~~~~~~~~~~~~~~~~a~~~~~~~ 400 (1129)
|+++..|.|++|+|-.|+...... .++.+|...- ......+- --.|++..|....+ .......|-+-+|=.+..
T Consensus 433 G~~l~tD~vVvavG~ePN~ela~~-sgLeiD~~lGGfrvnaeL~--ar~NvwvAGdaacF--~D~~LGrRRVehhdhavv 507 (659)
T KOG1346|consen 433 GSELRTDLVVVAVGEEPNSELAEA-SGLEIDEKLGGFRVNAELK--ARENVWVAGDAACF--EDGVLGRRRVEHHDHAVV 507 (659)
T ss_pred CCeeeeeeEEEEecCCCchhhccc-ccceeecccCcEEeeheee--cccceeeecchhhh--hcccccceecccccccee
Confidence 999999999999999999988764 5677775431 11111111 12456666655433 222255666677777777
Q ss_pred cccccc
Q psy12350 401 KHLINI 406 (1129)
Q Consensus 401 ~~~~~~ 406 (1129)
+|+|--
T Consensus 508 SGRLAG 513 (659)
T KOG1346|consen 508 SGRLAG 513 (659)
T ss_pred eceecc
Confidence 777765
No 174
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.90 E-value=1.9e-09 Score=123.59 Aligned_cols=151 Identities=21% Similarity=0.286 Sum_probs=76.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC--------ceEecCC-CCCCCCCCCC---ccCcccccccccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG--------GTWVYTE-QTGRDQYGLP---VHSSMYKSLKTNL 77 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G--------G~w~~~~-~~~~~~~~~~---~~~~~y~~l~~~~ 77 (1129)
+||+|||||||||.||..|++ .|.+|+|+||++.+| |-|+.++ +.....+... ....+++.+....
T Consensus 1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 589999999999999999999 679999999999885 7888766 2221111000 0111222222222
Q ss_pred Ccccccc-CCC--CCCCC-CCCCCC---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 78 PKEIMEL-SGY--HHKGH-PDKSYI---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 78 ~~~~~~~-~d~--~~~~~-~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
+.++..| .+. +.... ..+-|| ...++++-|...+++.++ .++++++|..+.+. +...+.+.. ..
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv--~i~~~~~V~~i~~~----~~~~f~v~~---~~ 149 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGV--EIHFNTRVKSIEKK----EDGVFGVKT---KN 149 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT---EEE-S--EEEEEEE----TTEEEEEEE---TT
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCC--EEEeCCEeeeeeec----CCceeEeec---cC
Confidence 2222111 011 11101 112233 567888888888888877 89999999999762 122233332 13
Q ss_pred cceEEecceeeeEEEEecccCCCCCc
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTLPSK 176 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~p~~ 176 (1129)
...+.+| +||||||..+-|..
T Consensus 150 ~~~~~a~-----~vILAtGG~S~p~~ 170 (409)
T PF03486_consen 150 GGEYEAD-----AVILATGGKSYPKT 170 (409)
T ss_dssp TEEEEES-----EEEE----SSSGGG
T ss_pred cccccCC-----EEEEecCCCCcccc
Confidence 3456788 99999996665543
No 175
>PRK09897 hypothetical protein; Provisional
Probab=98.88 E-value=1e-08 Score=121.28 Aligned_cols=147 Identities=18% Similarity=0.257 Sum_probs=80.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCC-C-CCC--C---CCCC-ccCcccccccccCCccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQ-T-GRD--Q---YGLP-VHSSMYKSLKTNLPKEI 81 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~-~-~~~--~---~~~~-~~~~~y~~l~~~~~~~~ 81 (1129)
++|+||||||+|+++|.+|.+.+...+|+|||++..+|.-+.|... . .+. + ...| .....++-+..+....
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~~~~- 80 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQEDSH- 80 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhhHHH-
Confidence 5899999999999999999986666799999999989954444321 1 110 0 0000 0011111111100000
Q ss_pred cccCCCCCCC--CCCCCCCCHHHHHHHHHHHHHhc-------CCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 82 MELSGYHHKG--HPDKSYIAANDVLEYLNDFADNF-------NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 82 ~~~~d~~~~~--~~~~~~~~~~~~~~yl~~~~~~~-------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
+..+..+. .....|+++..+-+|+++..+.+ |....++.+++|+.+++.. ++|.++. .+...
T Consensus 81 --~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---~g~~V~t----~~gg~ 151 (534)
T PRK09897 81 --LQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITN---AGVMLAT----NQDLP 151 (534)
T ss_pred --HHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---CEEEEEE----CCCCe
Confidence 00000000 01235777777777776654433 2123566788899987632 2333321 11123
Q ss_pred eEEecceeeeEEEEecccC
Q psy12350 153 FYLFDLQVRFFLQLMQGHV 171 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~ 171 (1129)
...+| +||+|||+.
T Consensus 152 ~i~aD-----~VVLAtGh~ 165 (534)
T PRK09897 152 SETFD-----LAVIATGHV 165 (534)
T ss_pred EEEcC-----EEEECCCCC
Confidence 45688 999999964
No 176
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=98.82 E-value=8.3e-09 Score=121.97 Aligned_cols=269 Identities=16% Similarity=0.115 Sum_probs=151.0
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccc---c-cccccc--
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLP---K-DLMELC-- 815 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~---~-~~~~~~-- 815 (1129)
++|+|+|.+|+.+|..+++..++.+++++.++......- .+.. +.+......+..+....+ + ......
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 74 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYR----CPLS--LYVGGGIASLEDLRYPPRFNRATGIDVRTGT 74 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCC----Cccc--hHHhcccCCHHHhcccchhHHhhCCEEeeCC
Confidence 368999999999999999988778999888776432110 0000 000000000000000000 0 000000
Q ss_pred ---CCCCCCC----CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCC-----CCeEEEEcCCccHHH
Q psy12350 816 ---GYGHKGN----ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFA-----GKQAVVVGSGQSGLD 883 (1129)
Q Consensus 816 ---~~~~~~~----~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~-----gk~VvVVG~G~Sg~e 883 (1129)
....... ..........++.+|+.|..++ + .+...+++...+.+...++ .++|+|||+|..|++
T Consensus 75 ~v~~id~~~~~v~~~~g~~~yd~LvlatGa~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~gle 150 (415)
T COG0446 75 EVTSIDPENKVVLLDDGEIEYDYLVLATGARPRPPP--I--SDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLE 150 (415)
T ss_pred EEEEecCCCCEEEECCCcccccEEEEcCCCcccCCC--c--cccCceEEECCHHHHHHHHHHHhccCeEEEECCcHHHHH
Confidence 0000000 0012222333444899998877 2 1122244444443332221 489999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccch--hhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCc-------EEe
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDIT--LDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTG-------VRF 952 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~-------V~~ 952 (1129)
+|..+++.|.+|++++..+...... +.+.....+.+.. .+|+++. .+.+++.+. +..
T Consensus 151 ~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~------------~gi~~~~~~~~~~i~~~~~~~~~~~~~~ 218 (415)
T COG0446 151 AAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEK------------YGVELLLGTKVVGVEGKGNTLVVERVVG 218 (415)
T ss_pred HHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHH------------CCcEEEeCCceEEEEcccCcceeeEEEE
Confidence 9999999999999998876554332 2222211111111 1344433 366666532 577
Q ss_pred cCCcEeeccEEEEccCccCcCCCCCCCC-CeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHHHH
Q psy12350 953 QDGSYEQVDIILCCTGYSNHYPFLHESC-GIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNLFD 1020 (1129)
Q Consensus 953 ~dG~~~~~D~VI~aTG~~~~~~fl~~~~-g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e 1020 (1129)
.++..+++|.+++++|.+|+..+..... +....+.++ .+...+.....+++|++|++... ..+..+.
T Consensus 219 ~~~~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i-~v~~~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~ 297 (415)
T COG0446 219 IDGEEIKADLVIIGPGERPNVVLANDALPGLALAGGAV-LVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAV 297 (415)
T ss_pred eCCcEEEeeEEEEeecccccHHHHhhCccceeccCCCE-EEccccccCCCCCEEeccceEeeecccCCceeeeechhhHh
Confidence 8899999999999999999844333311 233333333 34444332258999999996421 2457888
Q ss_pred HHHHHHHHHHcCC
Q psy12350 1021 LQVRLFQQLMQGH 1033 (1129)
Q Consensus 1021 ~qa~~~a~~l~g~ 1033 (1129)
.|++.++..+.+.
T Consensus 298 ~~~~i~~~~~~~~ 310 (415)
T COG0446 298 AAGRIAAENIAGA 310 (415)
T ss_pred hhhHHHHHHhccc
Confidence 8888888888764
No 177
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=98.81 E-value=3.3e-09 Score=111.51 Aligned_cols=126 Identities=18% Similarity=0.262 Sum_probs=72.0
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHK 90 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~ 90 (1129)
||+|||||||||+||+.|++ .+.+|+|+|+.+..+.. ...++.......
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~~~~~~------------------------~~~~~~~~~~~~----- 49 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSPGTPYN------------------------SGCIPSPLLVEI----- 49 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSSHHHHH------------------------HSHHHHHHHHHH-----
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEecccccccc------------------------cccccccccccc-----
Confidence 79999999999999999998 77999999886532110 000111110000
Q ss_pred CCCCCCCCCHHHHHH----HHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 91 GHPDKSYIAANDVLE----YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 91 ~~~~~~~~~~~~~~~----yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
......... .+.+..++.++ .++++++|.+++..........+.+.....+......|| +||+
T Consensus 50 ------~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----~lvi 116 (201)
T PF07992_consen 50 ------APHRHEFLPARLFKLVDQLKNRGV--EIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYD-----YLVI 116 (201)
T ss_dssp ------HHHHHHHHHHHHGHHHHHHHHHTH--EEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEE-----EEEE
T ss_pred ------cccccccccccccccccccccceE--EEeeccccccccccccccccCcccceeeccCCceEecCC-----eeee
Confidence 000001110 11111233333 677788998887632100001222322234455678899 9999
Q ss_pred ecccCCCCCccccccc
Q psy12350 167 MQGHVTLPSKAEMLAD 182 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~ 182 (1129)
||| +.|+.|++||.
T Consensus 117 AtG--~~~~~~~i~g~ 130 (201)
T PF07992_consen 117 ATG--SRPRTPNIPGE 130 (201)
T ss_dssp EST--EEEEEESSTTT
T ss_pred cCc--cccceeecCCC
Confidence 999 77888888773
No 178
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.69 E-value=1.1e-07 Score=106.69 Aligned_cols=138 Identities=18% Similarity=0.251 Sum_probs=81.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccc--ccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIM--ELSG 86 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~--~~~d 86 (1129)
++|+|||+|++|+.+|.+|++....- .|.|||+...+|+-..|+....+ ...|++...| .++|
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs~~~p~--------------~~lNv~a~~mS~~~pD 67 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYSTEEPE--------------HLLNVPAARMSAFAPD 67 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCCCCCch--------------hhhccccccccccCCC
Confidence 68999999999999999998854332 39999999999988888654322 1112221111 1122
Q ss_pred -------C--------CCCC---CCCCCCCCHHHHHHHHHHHHHhcCCcce---eE-eceeeeeeccccccCCCCceEEe
Q psy12350 87 -------Y--------HHKG---HPDKSYIAANDVLEYLNDFADNFNLRNL---CL-VNKNVQPLYKHLINIEHPSMCII 144 (1129)
Q Consensus 87 -------~--------~~~~---~~~~~~~~~~~~~~yl~~~~~~~~~~~~---i~-~~~~V~~v~~~~~~~~~~~~~~~ 144 (1129)
| ..+. .....|+++.-+-+|+.++...+-...+ ++ ..++++.+.+.. +..+|.+
T Consensus 68 ~p~~F~~WL~~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~-n~~~~~~--- 143 (474)
T COG4529 68 IPQDFVRWLQKQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDT-NAGGYLV--- 143 (474)
T ss_pred CchHHHHHHHhcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceecc-CCceEEE---
Confidence 0 0010 1244688899999998887666532111 32 244555555421 1122222
Q ss_pred ccccCccceEEecceeeeEEEEecccCC
Q psy12350 145 GIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....+....+| -+|+|||+..
T Consensus 144 --~~~~g~~~~ad-----~~Vlatgh~~ 164 (474)
T COG4529 144 --TTADGPSEIAD-----IIVLATGHSA 164 (474)
T ss_pred --ecCCCCeeeee-----EEEEeccCCC
Confidence 22334556788 8999999543
No 179
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.67 E-value=1.2e-07 Score=102.06 Aligned_cols=105 Identities=20% Similarity=0.332 Sum_probs=67.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC-ceEecCCCCCCCCCCCCccCccccccccc-CCccccccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG-GTWVYTEQTGRDQYGLPVHSSMYKSLKTN-LPKEIMELSG 86 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G-G~w~~~~~~~~~~~~~~~~~~~y~~l~~~-~~~~~~~~~d 86 (1129)
..||+|||||||||+||..|++ .+++|+|+||+..+| |+|.- + ..++..... ...+.++..+
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~~Ggg~~~g----g----------~~~~~~~~~~~~~~~l~~~g 84 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGSWGG----G----------MLFSKIVVEKPAHEILDEFG 84 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccCC----C----------cceecccccchHHHHHHHCC
Confidence 4799999999999999999999 669999999999886 45531 1 011110000 0011111122
Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecc
Q psy12350 87 YHHKGHPDK-SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYK 131 (1129)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 131 (1129)
.++...... ...+..++.+.|.+.+.+.+. .+.++++|+.+..
T Consensus 85 i~~~~~~~g~~~~~~~el~~~L~~~a~e~GV--~I~~~t~V~dli~ 128 (254)
T TIGR00292 85 IRYEDEGDGYVVADSAEFISTLASKALQAGA--KIFNGTSVEDLIT 128 (254)
T ss_pred CCeeeccCceEEeeHHHHHHHHHHHHHHcCC--EEECCcEEEEEEE
Confidence 232211111 123566888888888888876 8899999988765
No 180
>KOG1800|consensus
Probab=98.67 E-value=2.4e-07 Score=99.13 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=83.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccc---cccccccCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLP---KDLMELCGY 817 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~---~~~~~~~~~ 817 (1129)
.++|||+||+|+.+|..|++..++++|.+||+.+.++|.-+|.-.|.. | .-... .|.- .+..+|+.+
T Consensus 22 ~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDH-----p----EvKnv-intFt~~aE~~rfsf~ 91 (468)
T KOG1800|consen 22 RVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDH-----P----EVKNV-INTFTKTAEHERFSFF 91 (468)
T ss_pred eEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCC-----c----chhhH-HHHHHHHhhccceEEE
Confidence 578999999999999999997666999999999999999887543321 1 11100 0000 011122111
Q ss_pred ---CCCCC-CCC--CCCChhhhhhccC-CCCCCCCCCCCCCCCcEEeeccCCC-----------CCCCCCCeEEEEcCCc
Q psy12350 818 ---GHKGN-ADK--SYIGAKDVLENYN-HPIYPEFKGKDMCQIPILHSRDYRT-----------PEPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 818 ---~~~~~-~~~--~~~~~~~v~~~~~-~P~~P~i~G~~~f~g~~~hs~~~~~-----------~~~~~gk~VvVVG~G~ 879 (1129)
..-.+ ... .-..+..+++.|+ .++..+|||-+. . .++.+..+.. ..++.+.+|+|||.|+
T Consensus 92 gNv~vG~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l-~-~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GN 169 (468)
T KOG1800|consen 92 GNVKVGRDVSLKELTDNYDAVVLAYGADGDRRLDIPGEEL-S-GVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGN 169 (468)
T ss_pred ecceecccccHHHHhhcccEEEEEecCCCCcccCCCCccc-c-cceehhhhhhhccCCCcccccCcccccceEEEEccCc
Confidence 11010 000 0001223333554 478889999762 2 3444443321 2356789999999999
Q ss_pred cHHHHHHHHHh
Q psy12350 880 SGLDITLDIAT 890 (1129)
Q Consensus 880 Sg~eiA~~la~ 890 (1129)
.++|+|..|..
T Consensus 170 VAlDvARiLls 180 (468)
T KOG1800|consen 170 VALDVARILLS 180 (468)
T ss_pred hhhhhhhhhhC
Confidence 99999988854
No 181
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.65 E-value=9.4e-08 Score=103.28 Aligned_cols=105 Identities=21% Similarity=0.334 Sum_probs=65.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce-EecCCCCCCCCCCCCccCccccccccc-CCccccccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT-WVYTEQTGRDQYGLPVHSSMYKSLKTN-LPKEIMELSG 86 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~-w~~~~~~~~~~~~~~~~~~~y~~l~~~-~~~~~~~~~d 86 (1129)
..||+||||||||++||.+|++ .|++|+|+||...+||. |.- + ..++..... .....+.-.+
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Ggg~~~g----g----------~~~~~~~v~~~~~~~l~~~g 88 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGMWGG----G----------MLFNKIVVQEEADEILDEFG 88 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCCccccC----c----------cccccccchHHHHHHHHHCC
Confidence 4799999999999999999999 67999999999888763 321 0 001100000 0000111111
Q ss_pred CCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecc
Q psy12350 87 YHHKGHPDK-SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYK 131 (1129)
Q Consensus 87 ~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 131 (1129)
.++...... ...+..++...|.+.+.+.|. .++++++|+.+..
T Consensus 89 v~~~~~~~g~~~vd~~~l~~~L~~~A~~~Gv--~I~~~t~V~dl~~ 132 (257)
T PRK04176 89 IRYKEVEDGLYVADSVEAAAKLAAAAIDAGA--KIFNGVSVEDVIL 132 (257)
T ss_pred CCceeecCcceeccHHHHHHHHHHHHHHcCC--EEEcCceeceeeE
Confidence 222211111 123567888888888888876 8899999988764
No 182
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=98.64 E-value=2e-07 Score=92.96 Aligned_cols=129 Identities=22% Similarity=0.263 Sum_probs=79.7
Q ss_pred EEEcCChHHHHHHHHhhcC---CCCceEEEEcccCCcC--ceEecCCCCCCCCCCCCccCcccccccccCCcccccc-C-
Q psy12350 13 GVIGGGAGGLTATKRLTEP---GSGFTCTTFEQTDNVG--GTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMEL-S- 85 (1129)
Q Consensus 13 ~IIGaG~aGl~aA~~l~~~---~~~~~v~v~E~~~~~G--G~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~-~- 85 (1129)
|||||||+|++++++|.+. ....+|+|||+++. | +.|.... -+.+.+|++...|.. +
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~-G~G~~~~~~~---------------~~~~llN~~a~~~s~~~~ 64 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF-GAGGAYRPDQ---------------PPSHLLNTPADQMSLFPD 64 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc-cccccCCCCC---------------ChHHhhcccccccccccc
Confidence 6999999999999999986 35789999999554 5 4665321 112233443333322 1
Q ss_pred ----CCC------C----CCCCCCCCCCHHHHHHHHHHHHHhcC--Ccce--e-EeceeeeeeccccccCCCCceEEecc
Q psy12350 86 ----GYH------H----KGHPDKSYIAANDVLEYLNDFADNFN--LRNL--C-LVNKNVQPLYKHLINIEHPSMCIIGI 146 (1129)
Q Consensus 86 ----d~~------~----~~~~~~~~~~~~~~~~yl~~~~~~~~--~~~~--i-~~~~~V~~v~~~~~~~~~~~~~~~~~ 146 (1129)
+|. . .......|+++..+-+||+++.+.+- +... + +.+.+|+.|++.. ++|.+..
T Consensus 65 ~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~---~~~~v~~--- 138 (156)
T PF13454_consen 65 DPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDD---DGYRVVT--- 138 (156)
T ss_pred cCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcC---CcEEEEE---
Confidence 110 0 01123479999999999998877652 2111 2 2356788777632 3443322
Q ss_pred ccCccceEEecceeeeEEEEeccc
Q psy12350 147 PRDTVGFYLFDLQVRFFLQLMQGH 170 (1129)
Q Consensus 147 ~~~~~~~~~~d~~~~~~lvvAtG~ 170 (1129)
.......+| +||+|||+
T Consensus 139 --~~g~~~~~d-----~VvLa~Gh 155 (156)
T PF13454_consen 139 --ADGQSIRAD-----AVVLATGH 155 (156)
T ss_pred --CCCCEEEeC-----EEEECCCC
Confidence 222456899 99999995
No 183
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.53 E-value=2.8e-07 Score=91.53 Aligned_cols=40 Identities=33% Similarity=0.650 Sum_probs=36.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC-ceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG-GTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G-G~w~ 51 (1129)
.||+|||||||||+||++|++ .|++|+||||+..+| |.|.
T Consensus 31 sDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 31 SDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIWG 71 (262)
T ss_pred ccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCcccc
Confidence 699999999999999999999 679999999998886 5776
No 184
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.48 E-value=3.7e-07 Score=93.42 Aligned_cols=131 Identities=20% Similarity=0.238 Sum_probs=80.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCC-CCCC------------------------C
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD-QYGL------------------------P 64 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~-~~~~------------------------~ 64 (1129)
.+|+|||||+||++||..|++ .|.+|+||||...+||-.......++. ++|- .
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV~~ 79 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLVDV 79 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCceee
Confidence 369999999999999999999 679999999999999988765544432 1221 1
Q ss_pred ccCcccccccccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEe
Q psy12350 65 VHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCII 144 (1129)
Q Consensus 65 ~~~~~y~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~ 144 (1129)
....+|......++..--+- |-..-|..+.+.+|| +..+ .|+++++|+.+.+. .+.|++...
T Consensus 80 W~~~~~~~~~~~~~~~~d~~--------pyvg~pgmsalak~L---AtdL----~V~~~~rVt~v~~~---~~~W~l~~~ 141 (331)
T COG3380 80 WTPAVWTFTGDGSPPRGDED--------PYVGEPGMSALAKFL---ATDL----TVVLETRVTEVART---DNDWTLHTD 141 (331)
T ss_pred ccccccccccCCCCCCCCCC--------ccccCcchHHHHHHH---hccc----hhhhhhhhhhheec---CCeeEEEec
Confidence 12333332211111111000 011123445555543 3433 78999999998763 355766542
Q ss_pred ccccCccceEEecceeeeEEEEecc
Q psy12350 145 GIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 145 ~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
+ ......|| .||||.-
T Consensus 142 ~----g~~~~~~d-----~vvla~P 157 (331)
T COG3380 142 D----GTRHTQFD-----DVVLAIP 157 (331)
T ss_pred C----CCcccccc-----eEEEecC
Confidence 2 23345688 8999864
No 185
>PRK06847 hypothetical protein; Provisional
Probab=98.43 E-value=1.3e-06 Score=101.50 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=80.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCC--CCCCCC---------CccC-ccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTG--RDQYGL---------PVHS-SMYKS 72 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~--~~~~~~---------~~~~-~~y~~ 72 (1129)
+.++|+|||||||||++|..|++ .|++|+||||++.+ |......++.- .+..|+ +... ..+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~- 79 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFD- 79 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEEC-
Confidence 35799999999999999999999 66999999998653 21111111000 000111 0000 0000
Q ss_pred ccccCCccccccC--CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 73 LKTNLPKEIMELS--GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 73 l~~~~~~~~~~~~--d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
.....+..++ .+.....+......+.++.+++.+.+...++ .++++++|+.++... +. +.+.. .+
T Consensus 80 ---~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~---~~--~~v~~-~~-- 146 (375)
T PRK06847 80 ---PDGTLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGA--DVRLGTTVTAIEQDD---DG--VTVTF-SD-- 146 (375)
T ss_pred ---CCCCEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCC--EEEeCCEEEEEEEcC---CE--EEEEE-cC--
Confidence 0001111111 0000001122345678899999988887776 899999999887521 22 22222 12
Q ss_pred cceEEecceeeeEEEEecccCC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.....+| .||+|+|.++
T Consensus 147 g~~~~ad-----~vI~AdG~~s 163 (375)
T PRK06847 147 GTTGRYD-----LVVGADGLYS 163 (375)
T ss_pred CCEEEcC-----EEEECcCCCc
Confidence 2345678 9999999654
No 186
>KOG2755|consensus
Probab=98.43 E-value=8.6e-07 Score=90.05 Aligned_cols=34 Identities=18% Similarity=0.368 Sum_probs=29.1
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.+|||||.||.+||..|++.-+..+|.++-..+
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass 34 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASS 34 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccH
Confidence 3689999999999999999877788888887644
No 187
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.42 E-value=9.4e-07 Score=99.03 Aligned_cols=143 Identities=13% Similarity=0.082 Sum_probs=78.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCC--CCCCCCCCccCcc--ccccccc-CCcccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQT--GRDQYGLPVHSSM--YKSLKTN-LPKEIMEL 84 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~--~~~~~~~~~~~~~--y~~l~~~-~~~~~~~~ 84 (1129)
+||+||||||||+++|..|++ .|.+|+|+||+...+..+.-.... .....+.+..... ....... ......
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 76 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSV-- 76 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEE--
Confidence 489999999999999999999 679999999988766533210000 0000000000000 0000000 000000
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEE
Q psy12350 85 SGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFL 164 (1129)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l 164 (1129)
+++.+. +.....++..+.+.+.+.+.+.+. .++++++|+.+.... +...+.+. ++.....+| +|
T Consensus 77 -~~~~~~-~~~~~i~r~~l~~~l~~~~~~~gv--~~~~~~~v~~~~~~~---~~~~~~~~----~~~~~~~a~-----~v 140 (295)
T TIGR02032 77 -EIPIET-ELAYVIDRDAFDEQLAERAQEAGA--ELRLGTTVLDVEIHD---DRVVVIVR----GGEGTVTAK-----IV 140 (295)
T ss_pred -EeccCC-CcEEEEEHHHHHHHHHHHHHHcCC--EEEeCcEEeeEEEeC---CEEEEEEc----CccEEEEeC-----EE
Confidence 111111 111235778888999888888766 889999998876421 11222221 122345677 99
Q ss_pred EEecccCC
Q psy12350 165 QLMQGHVT 172 (1129)
Q Consensus 165 vvAtG~~~ 172 (1129)
|+|+|..+
T Consensus 141 v~a~G~~s 148 (295)
T TIGR02032 141 IGADGSRS 148 (295)
T ss_pred EECCCcch
Confidence 99999554
No 188
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.38 E-value=2.6e-07 Score=77.00 Aligned_cols=37 Identities=38% Similarity=0.689 Sum_probs=33.8
Q ss_pred EEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 14 IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
|||||+|||+||..|++ .+++|+||||++.+||.+..
T Consensus 1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~~GG~~~~ 37 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDRLGGRARS 37 (68)
T ss_dssp EES-SHHHHHHHHHHHH--TTSEEEEEESSSSSSGGGCE
T ss_pred CEeeCHHHHHHHHHHHH--CCCcEEEEecCcccCcceeE
Confidence 89999999999999999 57999999999999999884
No 189
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.35 E-value=2.4e-06 Score=99.51 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=79.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCC-CCCCCCCCCCcc--CcccccccccCCccc-cccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE-QTGRDQYGLPVH--SSMYKSLKTNLPKEI-MELS 85 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~-~~~~~~~~~~~~--~~~y~~l~~~~~~~~-~~~~ 85 (1129)
+||+||||||||++||..|++ .|++|+|+||....+..|.-.- ......+|++.. ......++...+... ..+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~ 78 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIG 78 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEec
Confidence 489999999999999999999 6799999999766544432100 000011121110 000111111111111 0111
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc----cCccceEEecceee
Q psy12350 86 GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP----RDTVGFYLFDLQVR 161 (1129)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~d~~~~ 161 (1129)
. ..+....-...++..+.++|.+.|.+.|. .++.++ +..+.......+.+.+++.... .++.....++
T Consensus 79 ~-~~~~~~~~~~v~R~~~d~~L~~~a~~~G~--~v~~~~-~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~---- 150 (398)
T TIGR02028 79 R-TLKEHEYIGMLRREVLDSFLRRRAADAGA--TLINGL-VTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVD---- 150 (398)
T ss_pred c-CCCCCCceeeeeHHHHHHHHHHHHHHCCc--EEEcce-EEEEEeccCCCceEEEEEeeccccccCCCccEEEeC----
Confidence 0 00000000125788899999999988877 666554 5555321111233445443221 1222345667
Q ss_pred eEEEEecccCC
Q psy12350 162 FFLQLMQGHVT 172 (1129)
Q Consensus 162 ~~lvvAtG~~~ 172 (1129)
.||.|+|..+
T Consensus 151 -~VIgADG~~S 160 (398)
T TIGR02028 151 -AVIGADGANS 160 (398)
T ss_pred -EEEECCCcch
Confidence 9999999433
No 190
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.32 E-value=1.6e-06 Score=100.79 Aligned_cols=145 Identities=21% Similarity=0.283 Sum_probs=81.9
Q ss_pred EEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCC---C--------ccCcccccccccCCccc
Q psy12350 13 GVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGL---P--------VHSSMYKSLKTNLPKEI 81 (1129)
Q Consensus 13 ~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~---~--------~~~~~y~~l~~~~~~~~ 81 (1129)
+|||||+|||+||..|++ .|.+|+|+||++.+|+.+..+....|+-... + ....++..+....+.+.
T Consensus 1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~ 78 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDL 78 (400)
T ss_pred CEEEEeHHHHHHHHHHHh--cCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHH
Confidence 699999999999999999 6689999999998886554322211110000 0 00001111111111111
Q ss_pred ccc-CCC--CCCC-CCCCCCC---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 82 MEL-SGY--HHKG-HPDKSYI---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 82 ~~~-~d~--~~~~-~~~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
..+ .++ ++.. .....|| ...++.+.+.+.+++.++ .++++++|+.+.+.. +.+. +.. . ....
T Consensus 79 ~~~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv--~i~~~~~V~~i~~~~---~~~~--v~~--~--~~~i 147 (400)
T TIGR00275 79 IDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGV--EILTNSKVKSIKKDD---NGFG--VET--S--GGEY 147 (400)
T ss_pred HHHHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEecC---CeEE--EEE--C--CcEE
Confidence 111 000 1100 0011232 457888889888888876 789999999886521 2232 222 1 1245
Q ss_pred EecceeeeEEEEecccCCCCC
Q psy12350 155 LFDLQVRFFLQLMQGHVTLPS 175 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~~p~ 175 (1129)
.+| +||+|||.++.|.
T Consensus 148 ~ad-----~VIlAtG~~s~p~ 163 (400)
T TIGR00275 148 EAD-----KVILATGGLSYPQ 163 (400)
T ss_pred EcC-----EEEECCCCcccCC
Confidence 677 9999999776553
No 191
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.31 E-value=2.9e-06 Score=100.19 Aligned_cols=37 Identities=30% Similarity=0.494 Sum_probs=33.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..++|+||||||||+++|..|++ .|++|+|+||++..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 53 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAE 53 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCcc
Confidence 35799999999999999999999 67999999998754
No 192
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.29 E-value=4.7e-06 Score=98.04 Aligned_cols=146 Identities=13% Similarity=0.139 Sum_probs=78.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc------eEecCCCCCCCC-C--CCCccCccc-ccccccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG------TWVYTEQTGRDQ-Y--GLPVHSSMY-KSLKTNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG------~w~~~~~~~~~~-~--~~~~~~~~y-~~l~~~~ 77 (1129)
+.+||+||||||||++||..|++ .|++|+|+||.+.+|. .+.........+ . ..|...... +.+....
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMT 81 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEc
Confidence 35899999999999999999999 6699999999876653 221100000000 0 000000000 0000000
Q ss_pred Ccc--ccccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 78 PKE--IMELSGYHHKGHPDK-SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 78 ~~~--~~~~~d~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
... ...+.+-.....+.. -...+.++.++|.+.+.+.|. .++.+++|+.+... ++..+.+.+ . ....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv--~i~~~~~V~~i~~~----~g~v~~v~~--~--g~~i 151 (428)
T PRK10157 82 EKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGA--QLITGIRVDNLVQR----DGKVVGVEA--D--GDVI 151 (428)
T ss_pred CCCceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCC--EEECCCEEEEEEEe----CCEEEEEEc--C--CcEE
Confidence 000 011111000000011 223677888899988888876 88999999987642 222112221 1 2234
Q ss_pred EecceeeeEEEEeccc
Q psy12350 155 LFDLQVRFFLQLMQGH 170 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~ 170 (1129)
..| .||+|+|.
T Consensus 152 ~A~-----~VI~A~G~ 162 (428)
T PRK10157 152 EAK-----TVILADGV 162 (428)
T ss_pred ECC-----EEEEEeCC
Confidence 566 89999994
No 193
>KOG1346|consensus
Probab=98.28 E-value=9.2e-07 Score=95.10 Aligned_cols=130 Identities=13% Similarity=0.216 Sum_probs=80.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhc----CCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--e
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATT----GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--V 942 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~----~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i 942 (1129)
-++|.|||+|..|.|+|+.|.+. |.+|+.+-.... +|...+.++..+..+. ..-.++|.++++ |
T Consensus 347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~--nm~kiLPeyls~wt~e--------kir~~GV~V~pna~v 416 (659)
T KOG1346|consen 347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKY--NMEKILPEYLSQWTIE--------KIRKGGVDVRPNAKV 416 (659)
T ss_pred cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccC--ChhhhhHHHHHHHHHH--------HHHhcCceeccchhh
Confidence 37899999999999999999874 556765522110 1111111111111110 111347777776 5
Q ss_pred eEEeC--C--cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcc-cccccceeecCCCCcEEEcccc
Q psy12350 943 AELTP--T--GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNV-QPLYKHTINIEHPTMFILGVPR 1011 (1129)
Q Consensus 943 ~~v~~--~--~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~-~~ly~~~~~~~~p~l~~iG~~~ 1011 (1129)
+++.. . -+.++||.++..|+||.|+|-.||...... .|++++..-. .++...+. --.||++.|+..
T Consensus 417 ~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~ela~~-sgLeiD~~lGGfrvnaeL~--ar~NvwvAGdaa 487 (659)
T KOG1346|consen 417 ESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSELAEA-SGLEIDEKLGGFRVNAELK--ARENVWVAGDAA 487 (659)
T ss_pred hhhhhhccceEEEecCCCeeeeeeEEEEecCCCchhhccc-ccceeecccCcEEeeheee--cccceeeecchh
Confidence 55532 2 277899999999999999999999875554 6788775421 13333331 135899999864
No 194
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.25 E-value=3.7e-06 Score=97.98 Aligned_cols=141 Identities=11% Similarity=0.144 Sum_probs=79.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCC--CC-CCCCCCCCccC---cccccccccCCcccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE--QT-GRDQYGLPVHS---SMYKSLKTNLPKEIM 82 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~--~~-~~~~~~~~~~~---~~y~~l~~~~~~~~~ 82 (1129)
.+||+||||||||++||+.|++ .|++|+|+||.+.+|.-..-.. .+ .......+... ..........+....
T Consensus 3 ~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~ 80 (396)
T COG0644 3 EYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKV 80 (396)
T ss_pred eeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence 4899999999999999999999 5599999999988874222100 00 00000000100 000000000110000
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeee
Q psy12350 83 ELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRF 162 (1129)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 162 (1129)
.+ +.+. +..-...+..+.++|...|.+.|. .++.+++|+.+..+. ++..+.+.. .+ .+...+
T Consensus 81 ~~---~~~~-~~~y~v~R~~fd~~La~~A~~aGa--e~~~~~~~~~~~~~~---~~~~~~~~~--~~--~e~~a~----- 142 (396)
T COG0644 81 AI---EVPV-GEGYIVDRAKFDKWLAERAEEAGA--ELYPGTRVTGVIRED---DGVVVGVRA--GD--DEVRAK----- 142 (396)
T ss_pred EE---ecCC-CceEEEEhHHhhHHHHHHHHHcCC--EEEeceEEEEEEEeC---CcEEEEEEc--CC--EEEEcC-----
Confidence 00 0000 011233678888999999999887 889999998887531 122222211 11 344566
Q ss_pred EEEEecc
Q psy12350 163 FLQLMQG 169 (1129)
Q Consensus 163 ~lvvAtG 169 (1129)
+||.|+|
T Consensus 143 ~vI~AdG 149 (396)
T COG0644 143 VVIDADG 149 (396)
T ss_pred EEEECCC
Confidence 8999999
No 195
>PRK11445 putative oxidoreductase; Provisional
Probab=98.25 E-value=3.6e-06 Score=96.49 Aligned_cols=145 Identities=11% Similarity=0.144 Sum_probs=74.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---------CceEecCCCCCCCCCCCCccCcccccccccCCcc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---------GGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---------GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~ 80 (1129)
+||+||||||||+++|..|++ . ++|+|+||.+.+ ||.....-..-....|+............. +-.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~-~~~ 77 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIF-AVK 77 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccc-eee
Confidence 689999999999999999998 6 899999998743 221110000000001111000000000000 000
Q ss_pred ccccCCCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 81 IMELSGYHHKG--HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 81 ~~~~~d~~~~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
...+.+ +... .......++.++.+.+.+.+ ..++ .++++++|+.+... .++|.+... .++......+|
T Consensus 78 ~~~~~~-~~~~~~~~~~~~i~R~~~~~~L~~~~-~~gv--~v~~~~~v~~i~~~---~~~~~v~~~--~~g~~~~i~a~- 147 (351)
T PRK11445 78 TIDLAN-SLTRNYQRSYINIDRHKFDLWLKSLI-PASV--EVYHNSLCRKIWRE---DDGYHVIFR--ADGWEQHITAR- 147 (351)
T ss_pred Eecccc-cchhhcCCCcccccHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEEc---CCEEEEEEe--cCCcEEEEEeC-
Confidence 001110 0000 00111256777877777643 3344 78899999888753 234554432 22222245677
Q ss_pred eeeeEEEEecccCC
Q psy12350 159 QVRFFLQLMQGHVT 172 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~ 172 (1129)
+||.|+|..+
T Consensus 148 ----~vV~AdG~~S 157 (351)
T PRK11445 148 ----YLVGADGANS 157 (351)
T ss_pred ----EEEECCCCCc
Confidence 9999999554
No 196
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.23 E-value=6.4e-06 Score=96.02 Aligned_cols=146 Identities=16% Similarity=0.179 Sum_probs=78.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CCc---CceEecCCCCCCCCCCCCcc--CcccccccccCCccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DNV---GGTWVYTEQTGRDQYGLPVH--SSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~~---GG~w~~~~~~~~~~~~~~~~--~~~y~~l~~~~~~~~~~ 83 (1129)
+||+||||||||++||+.|++ .|++|+|+||. ... ||.... ...+.++++.. ...+...+...+....-
T Consensus 1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~~~~~~~cg~~i~~---~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~ 75 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR--AGIETILLERALSNIKPCGGAIPP---CLIEEFDIPDSLIDRRVTQMRMISPSRVPI 75 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCcCcCcCCcCH---hhhhhcCCchHHHhhhcceeEEEcCCCcee
Confidence 589999999999999999999 67999999997 221 222110 00011122110 01112222211211100
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc---cCccceEEeccee
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP---RDTVGFYLFDLQV 160 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~d~~~ 160 (1129)
..++|.+.. .....++..+.++|.+.+.+.|. .++. ++|+.+... .+.+.++..+.. .++......|
T Consensus 76 ~~~~~~~~~-~~~~~~r~~fd~~L~~~a~~~G~--~v~~-~~v~~v~~~---~~~~~v~~~~~~~~~~~~~~~i~a~--- 145 (388)
T TIGR02023 76 KVTIPSEDG-YVGMVRREVFDSYLRERAQKAGA--ELIH-GLFLKLERD---RDGVTLTYRTPKKGAGGEKGSVEAD--- 145 (388)
T ss_pred eeccCCCCC-ceEeeeHHHHHHHHHHHHHhCCC--EEEe-eEEEEEEEc---CCeEEEEEEeccccCCCcceEEEeC---
Confidence 011111000 00126888999999998888876 5654 457777542 133444443210 1122345677
Q ss_pred eeEEEEecccCC
Q psy12350 161 RFFLQLMQGHVT 172 (1129)
Q Consensus 161 ~~~lvvAtG~~~ 172 (1129)
.||.|+|..+
T Consensus 146 --~VI~AdG~~S 155 (388)
T TIGR02023 146 --VVIGADGANS 155 (388)
T ss_pred --EEEECCCCCc
Confidence 9999999554
No 197
>PRK06184 hypothetical protein; Provisional
Probab=98.23 E-value=6.6e-06 Score=99.32 Aligned_cols=146 Identities=12% Similarity=0.133 Sum_probs=78.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc----eEecCCCC--CCCCCCC---------CccC-ccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG----TWVYTEQT--GRDQYGL---------PVHS-SMYKS 72 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG----~w~~~~~~--~~~~~~~---------~~~~-~~y~~ 72 (1129)
..+|+||||||+||++|..|++ .|++|+|+||.+.+.- ... .++. -....|+ +... ..|..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~~~~~ra~~l-~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~ 79 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEPFPGSRGKGI-QPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRD 79 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcCccceee-cHHHHHHHHHcCcHHHHHhcCccccceeEEeC
Confidence 4799999999999999999999 6799999999875421 100 0000 0001121 1110 11110
Q ss_pred ccccCCccccccCC-C-CCCCC--CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc
Q psy12350 73 LKTNLPKEIMELSG-Y-HHKGH--PDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR 148 (1129)
Q Consensus 73 l~~~~~~~~~~~~d-~-~~~~~--~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 148 (1129)
...+.. ..+.. + +.+.. +.....+...+.+.|.+.+.+.+. .++++++|++++... +...+++.+ .
T Consensus 80 -~~~~~~--~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~i~~~~---~~v~v~~~~--~ 149 (502)
T PRK06184 80 -DGSVAE--SDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGH--RVEFGCELVGFEQDA---DGVTARVAG--P 149 (502)
T ss_pred -CceEEE--eeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEEcC---CcEEEEEEe--C
Confidence 000000 00000 0 00000 111223456677777777777765 899999999987521 233333322 1
Q ss_pred CccceEEecceeeeEEEEecccCC
Q psy12350 149 DTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 149 ~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
+.......| +||.|+|..|
T Consensus 150 ~~~~~i~a~-----~vVgADG~~S 168 (502)
T PRK06184 150 AGEETVRAR-----YLVGADGGRS 168 (502)
T ss_pred CCeEEEEeC-----EEEECCCCch
Confidence 223456677 9999999554
No 198
>PTZ00188 adrenodoxin reductase; Provisional
Probab=98.20 E-value=3.4e-06 Score=96.91 Aligned_cols=57 Identities=25% Similarity=0.230 Sum_probs=43.6
Q ss_pred eEEEeecccccceeeccCccccccCCchhhHHHHHH-hhCCCcceEEEcccCCcCcccccC
Q psy12350 724 MFILGVSFTIEEFIKVCPNIVDRHGPGGLTATKRLT-EAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 724 l~~vG~~~~pn~~~~~g~~~iiG~G~~gl~~a~~l~-~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
+.+.|-..|+... ....|+|||+||+|+.+|.+|+ +.| ++|+||||.+.+||++.+.
T Consensus 25 ~~~~~~~~~~~~~-~~krVAIVGaGPAGlyaA~~Ll~~~g--~~VtlfEk~p~pgGLvR~G 82 (506)
T PTZ00188 25 LPFTGKCFFTNEA-KPFKVGIIGAGPSALYCCKHLLKHER--VKVDIFEKLPNPYGLIRYG 82 (506)
T ss_pred CCCCccccCCCCC-CCCEEEEECCcHHHHHHHHHHHHhcC--CeEEEEecCCCCccEEEEe
Confidence 3444544443322 3346899999999999999876 457 9999999999999999964
No 199
>PRK10015 oxidoreductase; Provisional
Probab=98.20 E-value=1.1e-05 Score=94.86 Aligned_cols=37 Identities=24% Similarity=0.460 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+||||||||++||..|++ .|++|+|+||.+.+|
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence 4899999999999999999999 679999999987654
No 200
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.19 E-value=1e-05 Score=98.34 Aligned_cols=149 Identities=11% Similarity=0.116 Sum_probs=81.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc---eEecCCCCC--CCCCCCCc--c--Cccccccccc--
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG---TWVYTEQTG--RDQYGLPV--H--SSMYKSLKTN-- 76 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG---~w~~~~~~~--~~~~~~~~--~--~~~y~~l~~~-- 76 (1129)
..++|+||||||+||++|..|++ .|++|+|+||.+.++. .+...++.- .+..|+.. . .......+..
T Consensus 9 ~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~ 86 (538)
T PRK06183 9 HDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDA 86 (538)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcC
Confidence 45899999999999999999999 6799999999876532 111111000 00011100 0 0000011100
Q ss_pred CCccccccC-----CCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 77 LPKEIMELS-----GYHHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 77 ~~~~~~~~~-----d~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
..+.+..+. .+.+ +.........+.++|.+.+.++ ++ .++++++|+.++... +++.+++.+. +++
T Consensus 87 ~g~~~~~~~~~~~~~~g~---~~~~~~~q~~le~~L~~~~~~~~gv--~v~~g~~v~~i~~~~---~~v~v~~~~~-~G~ 157 (538)
T PRK06183 87 KGRCLAEIARPSTGEFGW---PRRNAFHQPLLEAVLRAGLARFPHV--RVRFGHEVTALTQDD---DGVTVTLTDA-DGQ 157 (538)
T ss_pred CCCEEEEEcCCCCCCCCC---ChhccCChHHHHHHHHHHHHhCCCc--EEEcCCEEEEEEEcC---CeEEEEEEcC-CCC
Confidence 001111221 0111 1112335667778888777665 45 899999999987532 3344433321 222
Q ss_pred cceEEecceeeeEEEEecccCC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
......| +||.|.|..|
T Consensus 158 ~~~i~ad-----~vVgADG~~S 174 (538)
T PRK06183 158 RETVRAR-----YVVGCDGANS 174 (538)
T ss_pred EEEEEEE-----EEEecCCCch
Confidence 3455677 9999999554
No 201
>PRK06185 hypothetical protein; Provisional
Probab=98.19 E-value=5.6e-06 Score=97.42 Aligned_cols=150 Identities=19% Similarity=0.244 Sum_probs=78.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc-----CceEecCCCCCCCCCCC--Cc---cCcccccccccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV-----GGTWVYTEQTGRDQYGL--PV---HSSMYKSLKTNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~-----GG~w~~~~~~~~~~~~~--~~---~~~~y~~l~~~~ 77 (1129)
...||+|||||++|+++|..|++ .|++|+|+|+++.. |..+......-.+..|+ .. ....+..++...
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~ 82 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEI 82 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEE
Confidence 35899999999999999999999 67999999997543 11111000000001121 00 000111111100
Q ss_pred Ccc---ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCC-ceEEeccccCccc
Q psy12350 78 PKE---IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHP-SMCIIGIPRDTVG 152 (1129)
Q Consensus 78 ~~~---~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~-~~~~~~~~~~~~~ 152 (1129)
... ...|...+.+ .+...+.....+.++|.+.+.+. ++ .++++++|+.+.... +.. .+.+.. .+...
T Consensus 83 ~~~~~~~~~~~~~~~~-~~~~~~v~~~~l~~~L~~~~~~~~~v--~i~~~~~v~~~~~~~---~~v~~v~~~~--~~g~~ 154 (407)
T PRK06185 83 GGRTVTLADFSRLPTP-YPYIAMMPQWDFLDFLAEEASAYPNF--TLRMGAEVTGLIEEG---GRVTGVRART--PDGPG 154 (407)
T ss_pred CCeEEEecchhhcCCC-CCcEEEeehHHHHHHHHHHHhhCCCc--EEEeCCEEEEEEEeC---CEEEEEEEEc--CCCcE
Confidence 111 1122111111 11112346778888888877665 45 788899999887531 111 122221 12223
Q ss_pred eEEecceeeeEEEEecccCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.+..| .||.|.|.++
T Consensus 155 ~i~a~-----~vI~AdG~~S 169 (407)
T PRK06185 155 EIRAD-----LVVGADGRHS 169 (407)
T ss_pred EEEeC-----EEEECCCCch
Confidence 45677 8999999654
No 202
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.18 E-value=8.4e-06 Score=95.83 Aligned_cols=146 Identities=12% Similarity=0.171 Sum_probs=78.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC------ceEecCCCC--CCCCCCC---------CccCcc-cc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG------GTWVYTEQT--GRDQYGL---------PVHSSM-YK 71 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G------G~w~~~~~~--~~~~~~~---------~~~~~~-y~ 71 (1129)
++|+||||||+|+++|..|++.|++++|+|+||.+... |... .++. -.+..|+ +..... ++
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l-~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 80 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAI-AAAARRMLEALGVWDEIAPEAQPITDMVITD 80 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEe-cHHHHHHHHHCCChhhhhhhcCcccEEEEEe
Confidence 68999999999999999999966679999999976421 1110 0000 0001111 111100 00
Q ss_pred cccc-cCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 72 SLKT-NLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 72 ~l~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
.... ........+..-..+..+.....++..+.+.|.+.+.+.++ .++++++|+.++.. ...+.+.. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~-----~~~v~v~~-~~-- 150 (403)
T PRK07333 81 SRTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGI--DLREATSVTDFETR-----DEGVTVTL-SD-- 150 (403)
T ss_pred CCCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEc-----CCEEEEEE-CC--
Confidence 0000 00000011110000001111234778888999888887766 78999999988652 22222321 12
Q ss_pred cceEEecceeeeEEEEecccC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHV 171 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~ 171 (1129)
......| .||.|+|..
T Consensus 151 g~~~~ad-----~vI~AdG~~ 166 (403)
T PRK07333 151 GSVLEAR-----LLVAADGAR 166 (403)
T ss_pred CCEEEeC-----EEEEcCCCC
Confidence 2345677 999999944
No 203
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.17 E-value=1.6e-05 Score=91.89 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=52.1
Q ss_pred CCCCCCcccch-hhhc----ccccEEEEccccCCccccc------------CCCCeEEcCCceEEcC--Cce---EEcCC
Q psy12350 265 AANGPSGLDIT-HDIS----TEATTVFLSHHSEHVKKLR------------FPNNVVKKPDIAELTP--TGV---RFQDG 322 (1129)
Q Consensus 265 vGgG~sg~e~A-~~l~----~~~~~V~lv~r~~~~~~~~------------~~~~i~~~~~v~~~~~--~~v---~~~dg 322 (1129)
++.+.+|+|.+ ..++ .+|.+|+++.+.++.++.. ...++..+..|.+++. +++ ...+|
T Consensus 221 ~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g 300 (422)
T PRK05329 221 LLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNH 300 (422)
T ss_pred EECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCC
Confidence 58999999999 6665 4699999998877654321 1225666777877753 332 22345
Q ss_pred C--EeecCEEEEccccccc
Q psy12350 323 S--YEQVDIILYCTGYTYR 339 (1129)
Q Consensus 323 ~--~~~~D~VI~atG~~~~ 339 (1129)
+ .+++|.||+|||...+
T Consensus 301 ~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 301 GDIPLRARHFVLATGSFFS 319 (422)
T ss_pred ceEEEECCEEEEeCCCccc
Confidence 4 4699999999997644
No 204
>PRK06753 hypothetical protein; Provisional
Probab=98.16 E-value=7.5e-06 Score=95.14 Aligned_cols=143 Identities=17% Similarity=0.231 Sum_probs=75.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC---ceEecCCCC--CCCCCCCCc----cCcccccccccCCcc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG---GTWVYTEQT--GRDQYGLPV----HSSMYKSLKTNLPKE 80 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G---G~w~~~~~~--~~~~~~~~~----~~~~y~~l~~~~~~~ 80 (1129)
++|+||||||||+++|..|++ .|++|+||||++.+. ..+...++. .....|+.. .......+....+..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g 78 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKG 78 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcccccccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCC
Confidence 489999999999999999999 679999999987642 111111100 000111100 000001000000000
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
. .+...++...+.....++..+.+.|.+.+.. ..|+++++|++++.. ...+.+.. .+ .....+|
T Consensus 79 ~-~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~----~~i~~~~~v~~i~~~-----~~~v~v~~-~~--g~~~~~~--- 142 (373)
T PRK06753 79 T-LLNKVKLKSNTLNVTLHRQTLIDIIKSYVKE----DAIFTGKEVTKIENE-----TDKVTIHF-AD--GESEAFD--- 142 (373)
T ss_pred C-EEeecccccCCccccccHHHHHHHHHHhCCC----ceEEECCEEEEEEec-----CCcEEEEE-CC--CCEEecC---
Confidence 0 0011111111112235777888888776653 268999999998752 22233322 12 2345677
Q ss_pred eeEEEEecccCC
Q psy12350 161 RFFLQLMQGHVT 172 (1129)
Q Consensus 161 ~~~lvvAtG~~~ 172 (1129)
.||-|.|..|
T Consensus 143 --~vigadG~~S 152 (373)
T PRK06753 143 --LCIGADGIHS 152 (373)
T ss_pred --EEEECCCcch
Confidence 8888999443
No 205
>PRK06126 hypothetical protein; Provisional
Probab=98.16 E-value=1.5e-05 Score=97.32 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..+|+||||||+||++|..|++ .|++|+||||.+.
T Consensus 7 ~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~~ 41 (545)
T PRK06126 7 ETPVLIVGGGPVGLALALDLGR--RGVDSILVERKDG 41 (545)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence 4799999999999999999999 6799999999764
No 206
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.14 E-value=2.4e-06 Score=98.49 Aligned_cols=149 Identities=15% Similarity=0.180 Sum_probs=78.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc----CceEecCCCC-CCCCCCC---------Cc---cCccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV----GGTWVYTEQT-GRDQYGL---------PV---HSSMYKS 72 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~----GG~w~~~~~~-~~~~~~~---------~~---~~~~y~~ 72 (1129)
.+|+||||||||+++|..|++ .|++|+||||++.. .|.....+.. -....|+ +. ....|..
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~ 79 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDG 79 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEE
T ss_pred ceEEEECCCHHHHHHHHHHHh--cccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecc
Confidence 689999999999999999999 66999999997653 1221110000 0000111 00 0001110
Q ss_pred c-----cccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc
Q psy12350 73 L-----KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP 147 (1129)
Q Consensus 73 l-----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~ 147 (1129)
. ....+.....+. . ....+......+..+.+.|.+.+++.++ .++++++|+.+.... ++..+.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~~~~d~---~~~~~~~~~~~ 152 (356)
T PF01494_consen 80 ISDSRIWVENPQIREDME-I-DTKGPYGHVIDRPELDRALREEAEERGV--DIRFGTRVVSIEQDD---DGVTVVVRDGE 152 (356)
T ss_dssp TTTSEEEEEEEEEEEECH-S-TSGSSCEEEEEHHHHHHHHHHHHHHHTE--EEEESEEEEEEEEET---TEEEEEEEETC
T ss_pred cCCccceeeecccceeee-c-cccCCcchhhhHHHHHHhhhhhhhhhhh--hheeeeecccccccc---ccccccccccc
Confidence 0 000000000100 0 0001112234678899999999888875 899999999876521 22333343323
Q ss_pred cCccceEEecceeeeEEEEecccCC
Q psy12350 148 RDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 148 ~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.++......| .||-|.|..|
T Consensus 153 ~g~~~~i~ad-----lvVgADG~~S 172 (356)
T PF01494_consen 153 DGEEETIEAD-----LVVGADGAHS 172 (356)
T ss_dssp TCEEEEEEES-----EEEE-SGTT-
T ss_pred CCceeEEEEe-----eeecccCccc
Confidence 3333456677 8999999544
No 207
>PRK07208 hypothetical protein; Provisional
Probab=98.12 E-value=4.4e-06 Score=100.51 Aligned_cols=42 Identities=33% Similarity=0.508 Sum_probs=38.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+.++|+|||||+|||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~--~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLK--RGYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceee
Confidence 34799999999999999999999 5799999999999999987
No 208
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.12 E-value=1.7e-05 Score=92.70 Aligned_cols=148 Identities=10% Similarity=0.118 Sum_probs=77.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC----c--e--EecCCCCC--CCCCCCC--c---cCccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG----G--T--WVYTEQTG--RDQYGLP--V---HSSMYKS 72 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G----G--~--w~~~~~~~--~~~~~~~--~---~~~~y~~ 72 (1129)
...+|+||||||+|+++|..|++ .|++|+|+||.+..+ | . ....+..- .+..|+- . ....|..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~ 82 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRR 82 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccE
Confidence 45799999999999999999999 669999999976431 1 0 00000000 0011110 0 0001111
Q ss_pred ccccC--CccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 73 LKTNL--PKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 73 l~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
...-. ......+...............+..+.+.|.+.+.+.++ .++++++|+++.... +.+.++. .++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~~---~~v~v~~---~~g- 153 (392)
T PRK08773 83 MRVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGV--QLHCPARVVALEQDA---DRVRLRL---DDG- 153 (392)
T ss_pred EEEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeEEEEEecC---CeEEEEE---CCC-
Confidence 10000 000111110000000011123567777888777777766 789999999887521 2232222 122
Q ss_pred cceEEecceeeeEEEEecccCC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.....| .||.|+|..+
T Consensus 154 -~~~~a~-----~vV~AdG~~S 169 (392)
T PRK08773 154 -RRLEAA-----LAIAADGAAS 169 (392)
T ss_pred -CEEEeC-----EEEEecCCCc
Confidence 345667 9999999554
No 209
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.10 E-value=2.8e-06 Score=73.98 Aligned_cols=73 Identities=25% Similarity=0.402 Sum_probs=51.4
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP 947 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~ 947 (1129)
||+|||||.+|+|+|..|++.+++||++++.+..++. .+.......+.+.. .+|+++.+ ++++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~------------~gV~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRK------------RGVEVHTNTKVKEIEK 68 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHH------------TTEEEEESEEEEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHH------------CCCEEEeCCEEEEEEE
Confidence 6999999999999999999999999999998876632 22223222221111 26777665 777754
Q ss_pred --Cc--EEecCC
Q psy12350 948 --TG--VRFQDG 955 (1129)
Q Consensus 948 --~~--V~~~dG 955 (1129)
++ |+|+||
T Consensus 69 ~~~~~~V~~~~g 80 (80)
T PF00070_consen 69 DGDGVEVTLEDG 80 (80)
T ss_dssp ETTSEEEEEETS
T ss_pred eCCEEEEEEecC
Confidence 34 777776
No 210
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.10 E-value=1.5e-05 Score=93.02 Aligned_cols=139 Identities=14% Similarity=0.152 Sum_probs=75.5
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCC-CCCCCCC-ccCcccccccccCCccccccCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG-RDQYGLP-VHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~-~~~~~~~-~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
||+||||||||+++|..|++ .|++|+|+|+++.+||.+.+..... ....++. .....|... ....+++.+
T Consensus 1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 72 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDV------YEYRFPKQP 72 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCc------eEEecCCcc
Confidence 69999999999999999998 6799999999988887443211100 0000000 000011100 000111110
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
...........+..+.+++.+.+...++ .+. +++|+.+.... .+.|.++. .+ ......+ .||.|+
T Consensus 73 ~~~~~~~~~i~~~~l~~~l~~~~~~~gv--~~~-~~~v~~i~~~~--~~~~~v~~---~~--g~~~~a~-----~VI~A~ 137 (388)
T TIGR01790 73 RKLGTAYGSVDSTRLHEELLQKCPEGGV--LWL-ERKAIHAEADG--VALSTVYC---AG--GQRIQAR-----LVIDAR 137 (388)
T ss_pred hhcCCceeEEcHHHHHHHHHHHHHhcCc--EEE-ccEEEEEEecC--CceeEEEe---CC--CCEEEeC-----EEEECC
Confidence 0000000124678888999888887765 453 56777765421 12233322 11 2345667 999999
Q ss_pred ccCC
Q psy12350 169 GHVT 172 (1129)
Q Consensus 169 G~~~ 172 (1129)
|..+
T Consensus 138 G~~s 141 (388)
T TIGR01790 138 GFGP 141 (388)
T ss_pred CCch
Confidence 9544
No 211
>PLN02661 Putative thiazole synthesis
Probab=98.10 E-value=1.2e-05 Score=88.85 Aligned_cols=42 Identities=24% Similarity=0.584 Sum_probs=36.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc-eEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-TWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG-~w~ 51 (1129)
..||+|||||+||++||..|++. ++++|+|+||+..+|| .|.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GGG~~~ 134 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGGGAWL 134 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCcccccceee
Confidence 46999999999999999999963 3799999999988866 554
No 212
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.10 E-value=2.1e-05 Score=95.98 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=80.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc---eEecCCCCC--CCCCCCCc----cCccccccccc-C
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG---TWVYTEQTG--RDQYGLPV----HSSMYKSLKTN-L 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG---~w~~~~~~~--~~~~~~~~----~~~~y~~l~~~-~ 77 (1129)
...+|+||||||+||++|..|++ .|++|+|+||++.+.. .+...++.- .+..|+.. ....+...... .
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 99 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLR 99 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeC
Confidence 34799999999999999999999 6799999999876532 122111100 00111100 00000000000 0
Q ss_pred CccccccCCCCCCCCCCC--CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 78 PKEIMELSGYHHKGHPDK--SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~--~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
......+...+......+ ...+...+.++|.+.+.+.+. ..++++++|++++... +++.+.+.+ .+......
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~-v~v~~~~~v~~i~~~~---~~v~v~~~~--~~g~~~i~ 173 (547)
T PRK08132 100 DEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPN-IDLRWKNKVTGLEQHD---DGVTLTVET--PDGPYTLE 173 (547)
T ss_pred CCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCC-cEEEeCCEEEEEEEcC---CEEEEEEEC--CCCcEEEE
Confidence 011112110000000001 113566777888887776531 3799999999987532 334443332 12222456
Q ss_pred ecceeeeEEEEecccCC
Q psy12350 156 FDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~ 172 (1129)
.| +||.|.|..+
T Consensus 174 ad-----~vVgADG~~S 185 (547)
T PRK08132 174 AD-----WVIACDGARS 185 (547)
T ss_pred eC-----EEEECCCCCc
Confidence 77 9999999544
No 213
>PRK08244 hypothetical protein; Provisional
Probab=98.09 E-value=1.5e-05 Score=96.18 Aligned_cols=148 Identities=14% Similarity=0.170 Sum_probs=78.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCC--CCCCCCC--c--cCcccccccccCCcc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTG--RDQYGLP--V--HSSMYKSLKTNLPKE 80 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~--~~~~~~~--~--~~~~y~~l~~~~~~~ 80 (1129)
.+|+||||||+||++|..|++ .|++|+|+||.+.. |......++.- .+..|+. . ....+..........
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~ 80 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDT 80 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccc
Confidence 689999999999999999999 67999999997653 11111111000 0111210 0 000000000000000
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
...+...+.+ .+.....+...+.+.|.+.++..++ .++++++|++++... ++..+++.+ .+.......|
T Consensus 81 ~~~~~~~~~~-~~~~~~i~q~~le~~L~~~~~~~gv--~v~~~~~v~~i~~~~---~~v~v~~~~--~~g~~~i~a~--- 149 (493)
T PRK08244 81 RLDFSALDTS-SNYTLFLPQAETEKVLEEHARSLGV--EIFRGAEVLAVRQDG---DGVEVVVRG--PDGLRTLTSS--- 149 (493)
T ss_pred cCCcccCCCC-CCcEEEecHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEcC---CeEEEEEEe--CCccEEEEeC---
Confidence 0111111100 0111123566788888888877765 799999999886521 222233321 1112345677
Q ss_pred eeEEEEecccCC
Q psy12350 161 RFFLQLMQGHVT 172 (1129)
Q Consensus 161 ~~~lvvAtG~~~ 172 (1129)
+||.|.|..+
T Consensus 150 --~vVgADG~~S 159 (493)
T PRK08244 150 --YVVGADGAGS 159 (493)
T ss_pred --EEEECCCCCh
Confidence 9999999544
No 214
>PRK06834 hypothetical protein; Provisional
Probab=98.09 E-value=2.2e-05 Score=93.72 Aligned_cols=145 Identities=16% Similarity=0.199 Sum_probs=78.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---C----ceEecCCCCCCCCCCCC--ccCcccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---G----GTWVYTEQTGRDQYGLP--VHSSMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---G----G~w~~~~~~~~~~~~~~--~~~~~y~~l~~~~~~ 79 (1129)
..+|+||||||+|+++|..|++ .|++|+|+||.+.. + +++..+- .-.+..|+. ........-......
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~-~~L~~lGl~~~l~~~~~~~~~~~~~~ 79 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPNQELVGSRAGGLHARTL-EVLDQRGIADRFLAQGQVAQVTGFAA 79 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCCcceeeECHHHH-HHHHHcCcHHHHHhcCCccccceeee
Confidence 4799999999999999999999 67999999997642 1 1111000 000011110 000000000000000
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
....+.+++.. .+.........+.+.|.+.+++.++ .++++++|+.++.. ...+.+.. .++ ....+|
T Consensus 80 ~~~~~~~~~~~-~~~~~~i~q~~le~~L~~~l~~~gv--~i~~~~~v~~v~~~-----~~~v~v~~-~~g--~~i~a~-- 146 (488)
T PRK06834 80 TRLDISDFPTR-HNYGLALWQNHIERILAEWVGELGV--PIYRGREVTGFAQD-----DTGVDVEL-SDG--RTLRAQ-- 146 (488)
T ss_pred EecccccCCCC-CCccccccHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEc-----CCeEEEEE-CCC--CEEEeC--
Confidence 01111111110 0111223556778888888888776 89999999998753 22233322 222 356677
Q ss_pred eeeEEEEecccCC
Q psy12350 160 VRFFLQLMQGHVT 172 (1129)
Q Consensus 160 ~~~~lvvAtG~~~ 172 (1129)
+||.|.|..+
T Consensus 147 ---~vVgADG~~S 156 (488)
T PRK06834 147 ---YLVGCDGGRS 156 (488)
T ss_pred ---EEEEecCCCC
Confidence 9999999554
No 215
>KOG0029|consensus
Probab=98.07 E-value=2.8e-06 Score=99.78 Aligned_cols=44 Identities=34% Similarity=0.567 Sum_probs=40.3
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.++++|+|||||.|||+||++|.+ .|++|+|+|.++.+||-...
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCcCceeEE
Confidence 346899999999999999999999 77999999999999998774
No 216
>PRK07045 putative monooxygenase; Reviewed
Probab=98.07 E-value=1.8e-05 Score=92.44 Aligned_cols=150 Identities=13% Similarity=0.104 Sum_probs=77.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCCC--CCCCCCc----c-CcccccccccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTGR--DQYGLPV----H-SSMYKSLKTNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~~--~~~~~~~----~-~~~y~~l~~~~ 77 (1129)
.+++|+|||||||||++|..|++ .|++|+||||.+.+ +|.-...++... +..|+.. . ......+....
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~ 81 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYH 81 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEec
Confidence 34799999999999999999999 67999999998754 222111111000 0112100 0 00111111100
Q ss_pred CccccccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 78 PKEIMELSGYHHKG-HPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~-~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
..+.....+++... .......++.++.+.|.+.+... ++ .++++++|+.++... ++..+.++. .+ .....
T Consensus 82 ~g~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~---~~~~~~v~~-~~--g~~~~ 153 (388)
T PRK07045 82 DKELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNV--RLRFETSIERIERDA---DGTVTSVTL-SD--GERVA 153 (388)
T ss_pred CCcEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCe--eEEeCCEEEEEEECC---CCcEEEEEe-CC--CCEEE
Confidence 11111101111000 00001235667777777665443 34 799999999887531 222122221 22 23455
Q ss_pred ecceeeeEEEEecccCC
Q psy12350 156 FDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~ 172 (1129)
.| .||.|.|..+
T Consensus 154 ~~-----~vIgADG~~S 165 (388)
T PRK07045 154 PT-----VLVGADGARS 165 (388)
T ss_pred CC-----EEEECCCCCh
Confidence 67 8999999554
No 217
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.06 E-value=1.2e-05 Score=94.32 Aligned_cols=37 Identities=32% Similarity=0.636 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
+++|+|||||++||++|..|++ .|++|+||||.+.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCcccc
Confidence 4799999999999999999999 679999999987653
No 218
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=98.06 E-value=2.4e-05 Score=68.12 Aligned_cols=68 Identities=25% Similarity=0.319 Sum_probs=55.0
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHK 90 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~~ 90 (1129)
+|+|||||+.|+.+|..|++ .+.+|+++++++.+. +
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~-----------------------~------------------- 36 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLL-----------------------P------------------- 36 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSS-----------------------T-------------------
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhh-----------------------h-------------------
Confidence 69999999999999999999 669999999977431 0
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecc
Q psy12350 91 GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYK 131 (1129)
Q Consensus 91 ~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~ 131 (1129)
.-..++.+++.++.++.|+ .+++++.|.++..
T Consensus 37 -------~~~~~~~~~~~~~l~~~gV--~v~~~~~v~~i~~ 68 (80)
T PF00070_consen 37 -------GFDPDAAKILEEYLRKRGV--EVHTNTKVKEIEK 68 (80)
T ss_dssp -------TSSHHHHHHHHHHHHHTTE--EEEESEEEEEEEE
T ss_pred -------hcCHHHHHHHHHHHHHCCC--EEEeCCEEEEEEE
Confidence 0123567777777777777 8999999999886
No 219
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.04 E-value=2.4e-05 Score=92.04 Aligned_cols=149 Identities=15% Similarity=0.168 Sum_probs=77.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc----CceEecCCCCCCCCCCCCccC--cccccccccCCcc-
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV----GGTWVYTEQTGRDQYGLPVHS--SMYKSLKTNLPKE- 80 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~----GG~w~~~~~~~~~~~~~~~~~--~~y~~l~~~~~~~- 80 (1129)
..+||+||||||||++||..|++ .|++|+|+||.... ||.... ...+.+|++... .....++...+..
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~~~~k~cgg~i~~---~~l~~lgl~~~~~~~~i~~~~~~~p~~~ 112 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKLDNAKPCGGAIPL---CMVGEFDLPLDIIDRKVTKMKMISPSNV 112 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCCccccccH---hHHhhhcCcHHHHHHHhhhheEecCCce
Confidence 35799999999999999999999 67999999997431 222110 000111221100 0001111111111
Q ss_pred ccccCCCCCCCCCCCC--CCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc----cCccceE
Q psy12350 81 IMELSGYHHKGHPDKS--YIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP----RDTVGFY 154 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~----~~~~~~~ 154 (1129)
...+.. ...+... ..++..+.++|.+.|.+.|. .++.+ +|+.++......+.+.+.+.+.. .++....
T Consensus 113 ~v~~~~---~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga--~~~~~-~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v 186 (450)
T PLN00093 113 AVDIGK---TLKPHEYIGMVRREVLDSFLRERAQSNGA--TLING-LFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTL 186 (450)
T ss_pred EEEecc---cCCCCCeEEEecHHHHHHHHHHHHHHCCC--EEEec-eEEEEEeccCCCCcEEEEEEeccccccCCCccEE
Confidence 111110 0001111 25888999999999988876 55544 46655421111123334433211 1222345
Q ss_pred EecceeeeEEEEecccCC
Q psy12350 155 LFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~ 172 (1129)
..| .||-|.|..+
T Consensus 187 ~a~-----~VIgADG~~S 199 (450)
T PLN00093 187 EVD-----AVIGADGANS 199 (450)
T ss_pred EeC-----EEEEcCCcch
Confidence 667 8999999443
No 220
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.03 E-value=2.3e-05 Score=91.55 Aligned_cols=37 Identities=30% Similarity=0.457 Sum_probs=32.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..++|+|||||++|+++|..|++ .|++|+|+||.+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~~ 42 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPPY 42 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCCC
Confidence 34799999999999999999999 67999999997653
No 221
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.03 E-value=3e-06 Score=85.34 Aligned_cols=41 Identities=29% Similarity=0.633 Sum_probs=33.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc-eEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-TWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG-~w~ 51 (1129)
..||+|||||||||+||++|++ .|++|++|||+..+|| .|.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSSS-BTTTTS
T ss_pred cCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCCCCCccccc
Confidence 4799999999999999999999 5799999999988875 565
No 222
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.01 E-value=2.2e-05 Score=91.73 Aligned_cols=145 Identities=14% Similarity=0.122 Sum_probs=76.6
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC--------ceEecCCCCC--CCCCCCC--c---cCcccccccc
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG--------GTWVYTEQTG--RDQYGLP--V---HSSMYKSLKT 75 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G--------G~w~~~~~~~--~~~~~~~--~---~~~~y~~l~~ 75 (1129)
+|+||||||||+++|..|++ .|++|+||||.+.++ ......++.- .+..|+. . ....+..+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~ 78 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHV 78 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEE
Confidence 69999999999999999999 679999999987542 1121111000 0011210 0 0001111111
Q ss_pred cCCc--cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-CcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 76 NLPK--EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFN-LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 76 ~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
.... ....+..-..........+++..+.+.|.+.+.+.+ . .++++++|+.+.... +.+. +.. .+ ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~--~v~~~~~v~~i~~~~---~~~~--v~~-~~--g~ 148 (385)
T TIGR01988 79 SDGGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNV--TLLCPARVVELPRHS---DHVE--LTL-DD--GQ 148 (385)
T ss_pred EeCCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCc--EEecCCeEEEEEecC---CeeE--EEE-CC--CC
Confidence 0010 001111000000001122466778888887777765 4 789999999987521 2232 221 12 22
Q ss_pred eEEecceeeeEEEEecccCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....| .||.|.|..+
T Consensus 149 ~~~~~-----~vi~adG~~S 163 (385)
T TIGR01988 149 QLRAR-----LLVGADGANS 163 (385)
T ss_pred EEEee-----EEEEeCCCCC
Confidence 45667 8999999544
No 223
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.00 E-value=7.9e-06 Score=93.64 Aligned_cols=43 Identities=42% Similarity=0.714 Sum_probs=40.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
++|||||||.|||+||..|+++++..+|+|||+.+.+||....
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 5899999999999999999998888999999999999999883
No 224
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.99 E-value=2.9e-05 Score=90.99 Aligned_cols=35 Identities=26% Similarity=0.437 Sum_probs=32.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+|+|||||+|||++|..|++ .|++|+|+||.+.+
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcc
Confidence 689999999999999999999 67999999998754
No 225
>PRK08013 oxidoreductase; Provisional
Probab=97.99 E-value=3.5e-05 Score=90.20 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=32.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.++|+||||||+|+++|..|++ .|++|+|+||.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence 3799999999999999999999 6799999999875
No 226
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.99 E-value=1.5e-06 Score=102.16 Aligned_cols=142 Identities=13% Similarity=0.127 Sum_probs=35.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCC--CccCcccccccccCCccccccCCCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGL--PVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~--~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
||+||||||||++||..+++ .|.+|+|+||.+.+||.....-....+.... .....++..+. ..+......+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~----~~~~~~~~~~ 74 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFL----NRLRARGGYP 74 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHH----HST-------
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHH----HHHhhhcccc
Confidence 79999999999999999999 6799999999999999876321100000000 00001111111 1111110000
Q ss_pred CCC--CCC-CCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEE
Q psy12350 89 HKG--HPD-KSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQ 165 (1129)
Q Consensus 89 ~~~--~~~-~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv 165 (1129)
.+. .+. ......+.+...+.+.+.+.|+ .+++++.|..+..++ ..-+.+.+.+ .+......-+ .+|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~l~~~l~e~gv--~v~~~t~v~~v~~~~--~~i~~V~~~~--~~g~~~i~A~-----~~I 143 (428)
T PF12831_consen 75 QEDRYGWVSNVPFDPEVFKAVLDEMLAEAGV--EVLLGTRVVDVIRDG--GRITGVIVET--KSGRKEIRAK-----VFI 143 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc--ccccccccccccccc--cccccccccc--cccccccccc-----ccc
Confidence 000 000 0123444556666777766666 899999999887632 1113333322 1122333444 789
Q ss_pred Eecc
Q psy12350 166 LMQG 169 (1129)
Q Consensus 166 vAtG 169 (1129)
-|||
T Consensus 144 DaTG 147 (428)
T PF12831_consen 144 DATG 147 (428)
T ss_dssp ----
T ss_pred cccc
Confidence 9999
No 227
>PRK09126 hypothetical protein; Provisional
Probab=97.98 E-value=4.3e-05 Score=89.47 Aligned_cols=34 Identities=32% Similarity=0.503 Sum_probs=31.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.+|+||||||+|+++|..|++ .|++|+|+||.+.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~ 37 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPL 37 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCc
Confidence 799999999999999999999 6799999999865
No 228
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.95 E-value=2.1e-05 Score=87.08 Aligned_cols=40 Identities=30% Similarity=0.429 Sum_probs=37.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
...++|||+|.+|+.||..|.+.| +++.++||++.+||.-
T Consensus 124 ~~svLVIGGGvAGitAAl~La~~G--~~v~LVEKepsiGGrm 163 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELADMG--FKVYLVEKEPSIGGRM 163 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHHcC--CeEEEEecCCcccccH
Confidence 456789999999999999999999 9999999999999964
No 229
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.94 E-value=4.2e-05 Score=89.30 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=31.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+.+|+||||||+||++|..|++ .|++|+|+||++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence 3689999999999999999999 6799999999864
No 230
>PRK07588 hypothetical protein; Provisional
Probab=97.94 E-value=3.7e-05 Score=89.84 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=31.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
++|+|||||++|+++|..|++ .|++|+|+||.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR--YGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCceEEEeCCCCc
Confidence 489999999999999999999 67999999998654
No 231
>PLN02463 lycopene beta cyclase
Probab=97.94 E-value=3.6e-05 Score=90.11 Aligned_cols=134 Identities=13% Similarity=0.217 Sum_probs=73.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc-----CceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV-----GGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~-----GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
.+||+||||||||+++|..|++ .|++|+|+|+.+.. .|.|.-. ....|+ .+.+....+.....
T Consensus 28 ~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~~~~~p~~~g~w~~~----l~~lgl------~~~l~~~w~~~~v~ 95 (447)
T PLN02463 28 VVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSPLSIWPNNYGVWVDE----FEALGL------LDCLDTTWPGAVVY 95 (447)
T ss_pred CceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCccchhccccchHHHH----HHHCCc------HHHHHhhCCCcEEE
Confidence 4799999999999999999999 67999999996532 2333200 000010 00000111111111
Q ss_pred cCCC-CC-CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceee
Q psy12350 84 LSGY-HH-KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVR 161 (1129)
Q Consensus 84 ~~d~-~~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 161 (1129)
+.+. .. ... .-...++.++.+++.+.+...++ .+. +++|++|+... +.+. +.. .+ +.....|
T Consensus 96 ~~~~~~~~~~~-~y~~V~R~~L~~~Ll~~~~~~GV--~~~-~~~V~~I~~~~---~~~~--V~~-~d--G~~i~A~---- 159 (447)
T PLN02463 96 IDDGKKKDLDR-PYGRVNRKKLKSKMLERCIANGV--QFH-QAKVKKVVHEE---SKSL--VVC-DD--GVKIQAS---- 159 (447)
T ss_pred EeCCCCccccC-cceeEEHHHHHHHHHHHHhhcCC--EEE-eeEEEEEEEcC---CeEE--EEE-CC--CCEEEcC----
Confidence 1000 00 000 01124677888888887777665 443 56888876521 2222 221 12 2345677
Q ss_pred eEEEEecccC
Q psy12350 162 FFLQLMQGHV 171 (1129)
Q Consensus 162 ~~lvvAtG~~ 171 (1129)
.||.|+|..
T Consensus 160 -lVI~AdG~~ 168 (447)
T PLN02463 160 -LVLDATGFS 168 (447)
T ss_pred -EEEECcCCC
Confidence 999999954
No 232
>PRK07538 hypothetical protein; Provisional
Probab=97.93 E-value=5.1e-05 Score=89.35 Aligned_cols=148 Identities=15% Similarity=0.100 Sum_probs=76.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC---ceEecCCCCC--CCCCCC---------CccCcccccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG---GTWVYTEQTG--RDQYGL---------PVHSSMYKSLKT 75 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G---G~w~~~~~~~--~~~~~~---------~~~~~~y~~l~~ 75 (1129)
++|+|||||+|||++|..|++ .|++|+||||.+.+. ......++.- ....|+ +.....+...
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~-- 76 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPELRPLGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNR-- 76 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCcccccCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcC--
Confidence 489999999999999999999 679999999987542 1111111100 001111 1111100000
Q ss_pred cCCccccccCCCCCCC-CCCC-CCCCHHHHHHHHHHHHHh-cCCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 76 NLPKEIMELSGYHHKG-HPDK-SYIAANDVLEYLNDFADN-FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 76 ~~~~~~~~~~d~~~~~-~~~~-~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
..+.+...+ ..... ...+ ...++.++.+.|.+.+.+ .+. ..|+++++|+.++... ++..+.+.+...++..
T Consensus 77 -~g~~~~~~~-~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~-~~i~~~~~v~~~~~~~---~~~~~~~~~~~~g~~~ 150 (413)
T PRK07538 77 -HGQRIWSEP-RGLAAGYDWPQYSIHRGELQMLLLDAVRERLGP-DAVRTGHRVVGFEQDA---DVTVVFLGDRAGGDLV 150 (413)
T ss_pred -CCCEEeecc-CCcccCCCCceEEEEHHHHHHHHHHHHHhhcCC-cEEEcCCEEEEEEecC---CceEEEEeccCCCccc
Confidence 000010000 00000 0000 124677787777666543 342 2699999999987521 2223333322222334
Q ss_pred eEEecceeeeEEEEecccCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....| .||-|.|..|
T Consensus 151 ~~~ad-----lvIgADG~~S 165 (413)
T PRK07538 151 SVRGD-----VLIGADGIHS 165 (413)
T ss_pred eEEee-----EEEECCCCCH
Confidence 56677 8999999554
No 233
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=6.8e-06 Score=93.62 Aligned_cols=44 Identities=27% Similarity=0.591 Sum_probs=40.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQ 55 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~ 55 (1129)
|||+|+|||.|||+||..|++ .|++|+|+|+++.+||.+.....
T Consensus 1 ~rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~~GGk~~s~~~ 44 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLGGKVASWRD 44 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh--CCCceEEEeccCccCceeeeeec
Confidence 589999999999999999999 77999999999999999885443
No 234
>PLN02697 lycopene epsilon cyclase
Probab=97.91 E-value=5.2e-05 Score=90.18 Aligned_cols=136 Identities=14% Similarity=0.141 Sum_probs=74.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCCCCCCCCCccCcccccccccCCccccccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS 85 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 85 (1129)
.+||+||||||||+++|..|++ .|++|+|+|+...+ +|+|.... ...|+. +.+....+....-++
T Consensus 108 ~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~~n~GvW~~~l----~~lgl~------~~i~~~w~~~~v~~~ 175 (529)
T PLN02697 108 TLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEF----KDLGLE------DCIEHVWRDTIVYLD 175 (529)
T ss_pred cccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCCCccccchhHH----HhcCcH------HHHHhhcCCcEEEec
Confidence 4799999999999999999999 67999999986443 34553100 000110 000000111111111
Q ss_pred CCCCCCCCCCC--CCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 86 GYHHKGHPDKS--YIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 86 d~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
+.... ..... .+++..+.+.+.+.+.+.+. .+ ++++|+.+.... +.+.+.. ..+ ......+ .
T Consensus 176 ~~~~~-~~~~~Yg~V~R~~L~~~Ll~~a~~~GV--~~-~~~~V~~I~~~~---~~~~vv~--~~d--G~~i~A~-----l 239 (529)
T PLN02697 176 DDKPI-MIGRAYGRVSRTLLHEELLRRCVESGV--SY-LSSKVDRITEAS---DGLRLVA--CED--GRVIPCR-----L 239 (529)
T ss_pred CCcee-eccCcccEEcHHHHHHHHHHHHHhcCC--EE-EeeEEEEEEEcC---CcEEEEE--EcC--CcEEECC-----E
Confidence 10000 00111 25677888888887777765 44 678888876421 2222211 111 1334566 8
Q ss_pred EEEecccCC
Q psy12350 164 LQLMQGHVT 172 (1129)
Q Consensus 164 lvvAtG~~~ 172 (1129)
||+|+|..+
T Consensus 240 VI~AdG~~S 248 (529)
T PLN02697 240 ATVASGAAS 248 (529)
T ss_pred EEECCCcCh
Confidence 999999655
No 235
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.90 E-value=3.8e-05 Score=90.42 Aligned_cols=36 Identities=28% Similarity=0.595 Sum_probs=31.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~G 47 (1129)
++|+|||||+|||++|..|++ .| .+|+||||.+.++
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAPAFG 37 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCCcCC
Confidence 479999999999999999999 55 5999999987653
No 236
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.89 E-value=6.5e-05 Score=87.81 Aligned_cols=36 Identities=22% Similarity=0.395 Sum_probs=32.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..+|+||||||||+++|..|++ .|++|+|+||++..
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCc
Confidence 4799999999999999999999 67999999998764
No 237
>PRK07236 hypothetical protein; Provisional
Probab=97.89 E-value=0.00012 Score=85.46 Aligned_cols=36 Identities=33% Similarity=0.518 Sum_probs=32.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+.++|+|||||++||++|..|++ .|++|+||||.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 45899999999999999999999 6799999999763
No 238
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.88 E-value=7.5e-05 Score=89.40 Aligned_cols=40 Identities=30% Similarity=0.469 Sum_probs=34.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC--cCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN--VGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~--~GG~ 49 (1129)
...||+|||||+|||+||..|++ .|.+|+|+||.+. .||.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~~~~GG~ 44 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPREWRGGN 44 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCCcc
Confidence 34799999999999999999999 5689999999864 5654
No 239
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.87 E-value=7.9e-05 Score=87.17 Aligned_cols=35 Identities=26% Similarity=0.541 Sum_probs=31.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.++|+||||||+|+++|..|++ .|++|+|+|+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ--HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 35899999999999999999999 679999999975
No 240
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.87 E-value=1.3e-05 Score=95.78 Aligned_cols=42 Identities=36% Similarity=0.617 Sum_probs=38.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
++|+|||||.|||+||+.|++.|.+++|+|||+++.+||.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEE
Confidence 479999999999999999999665599999999999999887
No 241
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.86 E-value=0.00011 Score=87.41 Aligned_cols=38 Identities=26% Similarity=0.467 Sum_probs=34.1
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcCceE
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~GG~w 50 (1129)
||+|||||.||++||..+++ .| .+|+|+||.+..||.-
T Consensus 1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~s 39 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGNS 39 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCcc
Confidence 69999999999999999999 67 8999999988877653
No 242
>PRK07190 hypothetical protein; Provisional
Probab=97.86 E-value=8.2e-05 Score=88.76 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..+|+||||||+||++|..|++ .|.+|+|+||.+.+
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~ 40 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGP 40 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcc
Confidence 4799999999999999999999 66999999998764
No 243
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.86 E-value=8.9e-05 Score=86.33 Aligned_cols=33 Identities=24% Similarity=0.466 Sum_probs=30.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCC
Confidence 699999999999999999999 679999999864
No 244
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.85 E-value=9.5e-05 Score=86.05 Aligned_cols=148 Identities=14% Similarity=0.174 Sum_probs=80.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CC---cCceEecCCCCC--CCCCCC-C----ccCcccccccccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DN---VGGTWVYTEQTG--RDQYGL-P----VHSSMYKSLKTNL 77 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~---~GG~w~~~~~~~--~~~~~~-~----~~~~~y~~l~~~~ 77 (1129)
.++|+||||||+||++|..|++ .|++|+|+||. +. .|-.....++.- ....|+ + .....+......-
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~ 79 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDD 79 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEec
Confidence 3789999999999999999999 66999999997 22 120111000000 001122 1 0111222111111
Q ss_pred Cc-cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcC-CcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 78 PK-EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFN-LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 78 ~~-~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~-~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
.. ....+........+.....+..++.+-|.+.+...+ + .++++++|+.++.. ...+++. +.. .+..+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v--~~~~~~~v~~~~~~-----~~~v~v~-l~~-dG~~~~ 150 (387)
T COG0654 80 GGRRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNV--TLRFGAEVEAVEQD-----GDGVTVT-LSF-DGETLD 150 (387)
T ss_pred CCceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCc--EEEcCceEEEEEEc-----CCceEEE-EcC-CCcEEe
Confidence 11 111111111111111233477888888888887765 4 89999999998863 2233322 221 223667
Q ss_pred ecceeeeEEEEecccCC
Q psy12350 156 FDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~ 172 (1129)
+| .||-|-|.+|
T Consensus 151 a~-----llVgADG~~S 162 (387)
T COG0654 151 AD-----LLVGADGANS 162 (387)
T ss_pred cC-----EEEECCCCch
Confidence 77 8999999544
No 245
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.85 E-value=5e-05 Score=89.26 Aligned_cols=33 Identities=18% Similarity=0.289 Sum_probs=30.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||||++|+++|..|++ .|++|+||||.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 689999999999999999999 679999999976
No 246
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.85 E-value=2.4e-05 Score=98.56 Aligned_cols=134 Identities=14% Similarity=0.153 Sum_probs=75.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC---cCceEecCCCCCCCCCCCCccCcccccccccCCc-cccc--
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN---VGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK-EIME-- 83 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~---~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~-~~~~-- 83 (1129)
++|+|||||||||++|..|++.++|++|+|+||++. +|.-+..+++. ...+.... ......+...... ..+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~~~G~Gi~ls~~~-l~~L~~~~-~~~~~~~~~~~~~~~~~~~~ 78 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYDTFGWGVVFSDAT-LGNLRAAD-PVSAAAIGDAFNHWDDIDVH 78 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCcccCcceEccHHH-HHHHHhcC-HHHHHHHHHhcccCCceEEE
Confidence 589999999999999999999655899999999875 34333322211 00000000 0000000000000 0000
Q ss_pred cCCCCCCCCCCCC--CCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceee
Q psy12350 84 LSGYHHKGHPDKS--YIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVR 161 (1129)
Q Consensus 84 ~~d~~~~~~~~~~--~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 161 (1129)
+.+...... ... -..+.++.+.|.+.+.+.++ .++++++|+.+.. ....+|
T Consensus 79 ~~g~~~~~~-g~~~~~i~R~~L~~~L~e~a~~~GV--~i~~g~~v~~i~~--------------------~~~~~D---- 131 (765)
T PRK08255 79 FKGRRIRSG-GHGFAGIGRKRLLNILQARCEELGV--KLVFETEVPDDQA--------------------LAADAD---- 131 (765)
T ss_pred ECCEEEEEC-CeeEecCCHHHHHHHHHHHHHHcCC--EEEeCCccCchhh--------------------hhcCCC----
Confidence 000000000 111 24788999999999988876 8999998875431 012367
Q ss_pred eEEEEecccCCC
Q psy12350 162 FFLQLMQGHVTL 173 (1129)
Q Consensus 162 ~~lvvAtG~~~~ 173 (1129)
.||.|+|..+.
T Consensus 132 -~VVgADG~~S~ 142 (765)
T PRK08255 132 -LVIASDGLNSR 142 (765)
T ss_pred -EEEEcCCCCHH
Confidence 99999996553
No 247
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.84 E-value=0.0002 Score=86.23 Aligned_cols=39 Identities=23% Similarity=0.509 Sum_probs=35.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||.||++||..+++ .|.+|+|+||.+.+||.
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG~ 99 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGGN 99 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCc
Confidence 4699999999999999999999 56899999999888874
No 248
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.83 E-value=7.6e-05 Score=87.50 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcC-CCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEP-GSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~-~~~~~v~v~E~~ 43 (1129)
.++|+||||||||+++|..|++. ..|++|+||||.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 47999999999999999999993 017999999995
No 249
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.82 E-value=4.4e-05 Score=89.01 Aligned_cols=143 Identities=13% Similarity=0.095 Sum_probs=75.5
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCc----C----ceEecCCC-CCCCCCCCCcc----Cccccccccc
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNV----G----GTWVYTEQ-TGRDQYGLPVH----SSMYKSLKTN 76 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~----G----G~w~~~~~-~~~~~~~~~~~----~~~y~~l~~~ 76 (1129)
||+||||||||+++|..|++ .| ++|+|+||.+.. | |.....+. .-.+..|+... ..........
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~ 78 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVS 78 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEE
Confidence 69999999999999999999 88 999999997643 1 11110000 00001121000 0000000000
Q ss_pred C--Ccccccc--CCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 77 L--PKEIMEL--SGYHHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 77 ~--~~~~~~~--~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
. ......+ +++..+ +......+.++.+.|.+.+... +. .++++++|+.+.... +++.+.. .+ .
T Consensus 79 ~~~~~~~~~~~~~~~~~~--~~~~~i~r~~l~~~L~~~~~~~~gv--~~~~~~~v~~i~~~~---~~~~v~~---~~--g 146 (382)
T TIGR01984 79 DQGHFGATHLRASEFGLP--ALGYVVELADLGQALLSRLALLTNI--QLYCPARYKEIIRNQ---DYVRVTL---DN--G 146 (382)
T ss_pred cCCCCceEEechhhcCCC--ccEEEEEcHHHHHHHHHHHHhCCCc--EEEcCCeEEEEEEcC---CeEEEEE---CC--C
Confidence 0 0000001 111100 0011246678888888877763 55 788999999986521 2333322 12 2
Q ss_pred ceEEecceeeeEEEEecccCC
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....+| .||.|.|..+
T Consensus 147 ~~~~ad-----~vV~AdG~~S 162 (382)
T TIGR01984 147 QQLRAK-----LLIAADGANS 162 (382)
T ss_pred CEEEee-----EEEEecCCCh
Confidence 345678 9999999543
No 250
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.81 E-value=1.8e-05 Score=94.36 Aligned_cols=42 Identities=36% Similarity=0.559 Sum_probs=39.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+||+|||||++||+||..|++ .|++|+||||++.+||.+..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~--~G~~V~VlE~~~~~GG~a~t 44 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLAR--AGLKVTVLEKNDRVGGRART 44 (487)
T ss_pred CccEEEECCChhHHHHHHHHHh--CCCEEEEEEecCCCCcceEE
Confidence 4899999999999999999999 77999999999999998874
No 251
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.80 E-value=9.1e-05 Score=85.55 Aligned_cols=136 Identities=16% Similarity=0.239 Sum_probs=74.2
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc--Cc--eEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV--GG--TWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~--GG--~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
||+||||||||+++|.+|++...+.+|+|+|++... .. +|.+....-.. . .+.....|+......+.......+
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~-~-~~~v~~~w~~~~v~~~~~~~~~~~ 78 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGP-L-DSLVSHRWSGWRVYFPDGSRILID 78 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccc-h-HHHHheecCceEEEeCCCceEEcc
Confidence 699999999999999999555588999999998766 22 33321111000 0 000111122111111111111111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
++ -.......+.+++.+.+...+ .++++++|++|+... ....+.. .++ ..+..+ .||-
T Consensus 79 ~~------Y~~i~~~~f~~~l~~~~~~~~---~~~~~~~V~~i~~~~-----~~~~v~~-~~g--~~i~a~-----~VvD 136 (374)
T PF05834_consen 79 YP------YCMIDRADFYEFLLERAAAGG---VIRLNARVTSIEETG-----DGVLVVL-ADG--RTIRAR-----VVVD 136 (374)
T ss_pred cc------eEEEEHHHHHHHHHHHhhhCC---eEEEccEEEEEEecC-----ceEEEEE-CCC--CEEEee-----EEEE
Confidence 10 013577888888887777332 467889999987632 1112221 122 244455 8899
Q ss_pred eccc
Q psy12350 167 MQGH 170 (1129)
Q Consensus 167 AtG~ 170 (1129)
|+|.
T Consensus 137 a~g~ 140 (374)
T PF05834_consen 137 ARGP 140 (374)
T ss_pred CCCc
Confidence 9993
No 252
>KOG2755|consensus
Probab=97.78 E-value=7e-05 Score=76.55 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=30.1
Q ss_pred cccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 743 IVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 743 ~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+|+|+|.+|.++|.+|+..-|+.++.++..++-+
T Consensus 3 ivvgggiagvscaeqla~~~psa~illitass~v 36 (334)
T KOG2755|consen 3 IVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV 36 (334)
T ss_pred EEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence 6899999999999999999988999999876543
No 253
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.77 E-value=0.00013 Score=85.77 Aligned_cols=33 Identities=30% Similarity=0.553 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
.++|+||||||+|+++|..|++ .|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCC
Confidence 3799999999999999999999 67999999996
No 254
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.77 E-value=3.4e-05 Score=92.52 Aligned_cols=43 Identities=35% Similarity=0.462 Sum_probs=39.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCC--CceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGS--GFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~--~~~v~v~E~~~~~GG~w~~ 52 (1129)
++|+|||||.|||+||..|.+.++ |++|+|||+++.+||.+..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQT 47 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEE
Confidence 689999999999999999999533 7999999999999999873
No 255
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.77 E-value=2.7e-05 Score=93.15 Aligned_cols=42 Identities=26% Similarity=0.370 Sum_probs=37.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCC----CCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~----~~~~v~v~E~~~~~GG~w~ 51 (1129)
++|+|||||.|||+||..|.+.+ .+++|+|+|+++.+||.+.
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 47999999999999999999853 3589999999999999987
No 256
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.76 E-value=1.3e-05 Score=66.85 Aligned_cols=41 Identities=32% Similarity=0.430 Sum_probs=36.1
Q ss_pred ccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCC
Q psy12350 744 VDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHI 786 (1129)
Q Consensus 744 iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~ 786 (1129)
|||+|++||++|..|.+.| .+|+|||+++.+||.|.....+
T Consensus 1 IiGaG~sGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~~~~~~ 41 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAG--YRVTVFEKNDRLGGRARSFRIP 41 (68)
T ss_dssp EES-SHHHHHHHHHHHHTT--SEEEEEESSSSSSGGGCEEEET
T ss_pred CEeeCHHHHHHHHHHHHCC--CcEEEEecCcccCcceeEEEEC
Confidence 7899999999999999998 9999999999999998855443
No 257
>PRK06996 hypothetical protein; Provisional
Probab=97.75 E-value=0.00017 Score=84.46 Aligned_cols=149 Identities=9% Similarity=0.163 Sum_probs=78.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCC--CceEEEEcccCCcC---ceEecCCCCCC----CCCCC-CccCcccccccc--
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGS--GFTCTTFEQTDNVG---GTWVYTEQTGR----DQYGL-PVHSSMYKSLKT-- 75 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~--~~~v~v~E~~~~~G---G~w~~~~~~~~----~~~~~-~~~~~~y~~l~~-- 75 (1129)
+.++|+||||||+|+++|..|++.|. |.+|+|+|+.+... ......-.... +..|+ +.....+...+.
T Consensus 10 ~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~ 89 (398)
T PRK06996 10 PDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQ 89 (398)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEec
Confidence 34799999999999999999999552 46899999975321 00000000000 01111 000000000000
Q ss_pred --cCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 76 --NLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 76 --~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
..........++..+. .....+...+.+.|.+.+...++ .++++++|+.++.. .+++.++..+ .+....
T Consensus 90 ~~~~g~~~~~~~~~~~~~--~g~~v~r~~l~~~L~~~~~~~g~--~~~~~~~v~~~~~~---~~~v~v~~~~--~~g~~~ 160 (398)
T PRK06996 90 RGHFGRTLIDRDDHDVPA--LGYVVRYGSLVAALARAVRGTPV--RWLTSTTAHAPAQD---ADGVTLALGT--PQGART 160 (398)
T ss_pred CCCCceEEecccccCCCc--CEEEEEhHHHHHHHHHHHHhCCC--EEEcCCeeeeeeec---CCeEEEEECC--CCcceE
Confidence 0001111222222110 11124667888888888877765 78899999888642 1333333221 111234
Q ss_pred EEecceeeeEEEEeccc
Q psy12350 154 YLFDLQVRFFLQLMQGH 170 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~ 170 (1129)
...| .||-|.|.
T Consensus 161 i~a~-----lvIgADG~ 172 (398)
T PRK06996 161 LRAR-----IAVQAEGG 172 (398)
T ss_pred Eeee-----EEEECCCC
Confidence 6677 89999994
No 258
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.75 E-value=0.00024 Score=87.43 Aligned_cols=159 Identities=13% Similarity=0.089 Sum_probs=80.2
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCC--CCCCCCC---------CccC-cccc
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQT--GRDQYGL---------PVHS-SMYK 71 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~--~~~~~~~---------~~~~-~~y~ 71 (1129)
....+|+||||||+||++|..|++. .|.+|+|+||.+.. |-.....++. -.+.+|+ +... ..|.
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~-~Gi~v~IiE~~~~~~~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~ 108 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAF-PDITTRIVERKPGRLELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWK 108 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcC-CCCcEEEEEcCCCCCCCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEc
Confidence 3457999999999999999999992 16999999997642 2111111100 0011121 1111 1111
Q ss_pred cccccCCcccc---ccCCCCCCCCCCC-CCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc
Q psy12350 72 SLKTNLPKEIM---ELSGYHHKGHPDK-SYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP 147 (1129)
Q Consensus 72 ~l~~~~~~~~~---~~~d~~~~~~~~~-~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~ 147 (1129)
.- ......+. .+.+.+......+ ...+...+.+.|.+.+.+.+....++++++|+.++.........++++.+..
T Consensus 109 ~~-~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~ 187 (634)
T PRK08294 109 PD-PADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTD 187 (634)
T ss_pred CC-CccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECC
Confidence 00 00000000 0111110000011 2235566778888877776543467899999988653211111233333221
Q ss_pred ---cCccceEEecceeeeEEEEecccCC
Q psy12350 148 ---RDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 148 ---~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.++..+...| +||-|-|..|
T Consensus 188 ~~~~g~~~tv~A~-----~lVGaDGa~S 210 (634)
T PRK08294 188 GEHEGEEETVRAK-----YVVGCDGARS 210 (634)
T ss_pred CCCCCceEEEEeC-----EEEECCCCch
Confidence 1222355667 9999999554
No 259
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.75 E-value=7.6e-05 Score=88.10 Aligned_cols=39 Identities=33% Similarity=0.532 Sum_probs=32.9
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
||+|||+|.|||+||..|++ .|.+|+|+||.+.+||...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~~ 39 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSSA 39 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGGG
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeecccccccc
Confidence 69999999999999999999 6689999999998777433
No 260
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.72 E-value=5e-05 Score=84.19 Aligned_cols=41 Identities=34% Similarity=0.617 Sum_probs=38.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++++|||||+|||+||+.|++ .|++|.++||++.+||...
T Consensus 124 ~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrma 164 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRMA 164 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccHH
Confidence 4789999999999999999999 7799999999999999865
No 261
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.71 E-value=0.00017 Score=83.00 Aligned_cols=42 Identities=29% Similarity=0.586 Sum_probs=36.1
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc--eEec
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG--TWVY 52 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG--~w~~ 52 (1129)
||+|||||+||+++|..|++.-++++|+|+|+.+.+|| +|.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~ 44 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSF 44 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCccccee
Confidence 69999999999999999998423799999999988887 5554
No 262
>PRK07233 hypothetical protein; Provisional
Probab=97.70 E-value=4.4e-05 Score=90.79 Aligned_cols=39 Identities=41% Similarity=0.753 Sum_probs=36.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
||+|||||.|||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~--~G~~v~vlE~~~~~GG~~~ 39 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK--RGHEVTVFEADDQLGGLAA 39 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCCcee
Confidence 69999999999999999999 5699999999999999876
No 263
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.69 E-value=6.8e-05 Score=82.48 Aligned_cols=39 Identities=23% Similarity=0.340 Sum_probs=35.5
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
+..+++|||+|++||.||..+.+.| .+|+|||+.+.+|-
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~~G--~~V~lid~~~k~Gr 40 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAKAG--RRVLLIDKGPKLGR 40 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhhcC--CEEEEEecCccccc
Confidence 4567899999999999999999999 99999999998863
No 264
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.69 E-value=3.4e-05 Score=82.08 Aligned_cols=42 Identities=36% Similarity=0.521 Sum_probs=37.2
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++++|+|||+|.|||+||..|.++ ++||+||.++.+||--+
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCccc
Confidence 3568999999999999999999984 59999999999999654
No 265
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=97.67 E-value=0.00022 Score=85.84 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=34.7
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
...+||+|||||..|+++|+.|++ .|++|+|+||++..+|+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d~~~Gt 44 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDDLASAT 44 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCc
Confidence 345899999999999999999999 66999999997544443
No 266
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.66 E-value=8.4e-05 Score=78.59 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=38.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+|++|||||.+|+..|..|++ .|.+|.|+||++++||.|.-
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~HIGGNaYd 42 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNHIGGNAYD 42 (374)
T ss_pred CcEEEECCchhHHHHHHHHHH--cCCEEEEEeccccCCCcccc
Confidence 689999999999999999888 67999999999999999983
No 267
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.66 E-value=0.00017 Score=84.08 Aligned_cols=34 Identities=24% Similarity=0.495 Sum_probs=31.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.+|+||||||+|+++|..|++ .|++|+||||.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCC
Confidence 689999999999999999999 6799999999874
No 268
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.66 E-value=0.00029 Score=83.84 Aligned_cols=38 Identities=24% Similarity=0.417 Sum_probs=34.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~~GG 48 (1129)
.+||+|||||+||++||..+++ .|.+|+|+|++ +.+|+
T Consensus 4 ~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~d~iG~ 42 (618)
T PRK05192 4 EYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNLDTIGQ 42 (618)
T ss_pred cceEEEECchHHHHHHHHHHHH--cCCcEEEEecccccccc
Confidence 4899999999999999999999 67999999997 46775
No 269
>PLN02568 polyamine oxidase
Probab=97.65 E-value=5.1e-05 Score=91.08 Aligned_cols=45 Identities=33% Similarity=0.485 Sum_probs=39.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC---CCceEEEEcccCCcCceEecC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG---SGFTCTTFEQTDNVGGTWVYT 53 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~---~~~~v~v~E~~~~~GG~w~~~ 53 (1129)
.++|+|||||+|||+||+.|++.| .+++|+|||+++.+||.+...
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 479999999999999999999843 248999999999999988753
No 270
>PRK07121 hypothetical protein; Validated
Probab=97.63 E-value=0.00022 Score=85.75 Aligned_cols=41 Identities=24% Similarity=0.360 Sum_probs=36.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||||.|||+||.++++ .|.+|+|+||.+.+||.-.
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s~ 60 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGATA 60 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCccc
Confidence 4799999999999999999999 6689999999888777443
No 271
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.62 E-value=0.00016 Score=88.29 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=34.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
.||+|||||.|||+||..+++.+++.+|+|+||....||
T Consensus 4 ~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~gg 42 (575)
T PRK05945 4 HDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIRS 42 (575)
T ss_pred ccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCch
Confidence 699999999999999999998666789999999776554
No 272
>KOG0685|consensus
Probab=97.62 E-value=6.5e-05 Score=83.93 Aligned_cols=44 Identities=34% Similarity=0.506 Sum_probs=38.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...||||||||.|||+||.+|.+.| ..+++|||..+.+||-...
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~t 63 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIHT 63 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEee
Confidence 3569999999999999999999754 5689999999999998773
No 273
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=97.61 E-value=0.00039 Score=81.83 Aligned_cols=35 Identities=34% Similarity=0.635 Sum_probs=31.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
+||+|||||..|+++|.+|++ .|++|+|+||++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~--~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ--RGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence 599999999999999999999 56999999998754
No 274
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.61 E-value=6.9e-06 Score=86.18 Aligned_cols=32 Identities=25% Similarity=0.658 Sum_probs=29.4
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
+|+|||||.+|+.+|..|++.+.+|++++..+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 69999999999999999999999999996644
No 275
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.60 E-value=0.00027 Score=81.90 Aligned_cols=144 Identities=16% Similarity=0.137 Sum_probs=76.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc-------CceEecCCCCC--CCCCCCC--c--cCcccccccc-
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV-------GGTWVYTEQTG--RDQYGLP--V--HSSMYKSLKT- 75 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~-------GG~w~~~~~~~--~~~~~~~--~--~~~~y~~l~~- 75 (1129)
.+|+||||||+|+++|..|++ .|++|+|+|+.+.. |.....+++.- .+..|+- . ....++.+..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~ 79 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ--KGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVV 79 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc--CCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEE
Confidence 589999999999999999999 67999999986321 22222111100 0011110 0 0000111100
Q ss_pred -cCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 76 -NLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 76 -~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
........+.... ..+......+.++.+.|.+-+...+. ..++++++|+++.... +.+.+.. . + ...
T Consensus 80 ~~~g~~~~~~~~~~--~~~~g~~v~r~~L~~~L~~~~~~~~~-v~~~~~~~v~~i~~~~---~~v~v~~---~-~--~~~ 147 (374)
T PRK06617 80 DNKASEILDLRNDA--DAVLGYVVKNSDFKKILLSKITNNPL-ITLIDNNQYQEVISHN---DYSIIKF---D-D--KQI 147 (374)
T ss_pred ECCCceEEEecCCC--CCCcEEEEEHHHHHHHHHHHHhcCCC-cEEECCCeEEEEEEcC---CeEEEEE---c-C--CEE
Confidence 0011111221100 00011234678888888887777641 2678899999886521 2333322 1 1 256
Q ss_pred EecceeeeEEEEecccCC
Q psy12350 155 LFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~ 172 (1129)
..| .||.|-|..|
T Consensus 148 ~ad-----lvIgADG~~S 160 (374)
T PRK06617 148 KCN-----LLIICDGANS 160 (374)
T ss_pred eeC-----EEEEeCCCCc
Confidence 677 9999999654
No 276
>PLN02268 probable polyamine oxidase
Probab=97.60 E-value=5.6e-05 Score=89.74 Aligned_cols=40 Identities=35% Similarity=0.637 Sum_probs=37.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+|+|||||.|||+||+.|.+ .|++|+|+|+++.+||-..
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD--ASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCceee
Confidence 479999999999999999999 6699999999999999877
No 277
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.59 E-value=0.00064 Score=81.55 Aligned_cols=37 Identities=30% Similarity=0.475 Sum_probs=31.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.||+|||||.|||+||..+++. +. |+|+||.+..||.
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~~--G~-V~lleK~~~~~g~ 39 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALADQ--GR-VIVLSKAPVTEGN 39 (488)
T ss_pred ccEEEECccHHHHHHHHHHHhC--CC-EEEEEccCCCCCc
Confidence 5899999999999999999994 45 9999998765543
No 278
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.59 E-value=0.00033 Score=78.89 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=28.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEE-cccCCcCce
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTF-EQTDNVGGT 49 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~-E~~~~~GG~ 49 (1129)
||+|||||+||.+||.++++ .|.+|+|+ ++.+.+|.+
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Lit~~~d~i~~~ 38 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLITHNTDTIGEM 38 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEEES-GGGTT--
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeecccccccc
Confidence 79999999999999999999 67999999 666666654
No 279
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.59 E-value=7.4e-05 Score=87.86 Aligned_cols=44 Identities=30% Similarity=0.369 Sum_probs=40.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCC--CCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPG--SGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~--~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+++|+|||||.|||+||.+|.+.+ +|.+|+|||+++.+||.+.
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 3579999999999999999999965 5789999999999999876
No 280
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.58 E-value=6.8e-05 Score=85.18 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=37.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||||+||+++|..|++ .|.+|+|+|+++.+||.|.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCCCcee
Confidence 589999999999999999998 5689999999999999776
No 281
>KOG2415|consensus
Probab=97.57 E-value=0.00018 Score=78.20 Aligned_cols=45 Identities=24% Similarity=0.477 Sum_probs=38.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcC----CCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEP----GSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~----~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...||||||||||||+||.+|++. +.+.+|.|+||...+||.-..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlS 123 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLS 123 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceec
Confidence 347999999999999999998763 457899999999999987653
No 282
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.57 E-value=0.00052 Score=78.31 Aligned_cols=39 Identities=26% Similarity=0.452 Sum_probs=36.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||..|+++|..|.+..++++|+|+||.+.+|
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 479999999999999999999977779999999999887
No 283
>PLN02576 protoporphyrinogen oxidase
Probab=97.55 E-value=7.4e-05 Score=90.35 Aligned_cols=44 Identities=30% Similarity=0.487 Sum_probs=39.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||.|||+||..|.+.+ |++|+|+|+++.+||.+..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~-g~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKH-GVNVLVTEARDRVGGNITS 54 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhc-CCCEEEEecCCCCCCceeE
Confidence 4579999999999999999999931 6999999999999998873
No 284
>PRK08275 putative oxidoreductase; Provisional
Probab=97.55 E-value=0.00022 Score=86.86 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||.|||+||..+++.+.+.+|+|+||.+..
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~~ 46 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANVK 46 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCCC
Confidence 36999999999999999999986567899999998753
No 285
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.53 E-value=0.0007 Score=79.68 Aligned_cols=38 Identities=13% Similarity=0.198 Sum_probs=32.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||+|.|||+||..+ . .+.+|+|+||.+..||.
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a-~--~G~~V~lleK~~~~gg~ 41 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNL-R--KDLKILMVSKGKLNECN 41 (433)
T ss_pred cccEEEECchHHHHHHHHHh-c--cCCCEEEEecCCCCCCc
Confidence 46999999999999999997 4 36899999998776653
No 286
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.53 E-value=0.00038 Score=80.58 Aligned_cols=33 Identities=27% Similarity=0.257 Sum_probs=30.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|.+|+.+|..+.+.| .+|+++|+..
T Consensus 3 ~DviIIG~G~aGl~aA~~la~~g--~~v~vi~~~~ 35 (422)
T PRK05329 3 FDVLVIGGGLAGLTAALAAAEAG--KRVALVAKGQ 35 (422)
T ss_pred CCEEEECccHHHHHHHHHHHHCC--CcEEEEECCC
Confidence 47899999999999999999999 9999999863
No 287
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.52 E-value=0.00044 Score=81.94 Aligned_cols=35 Identities=20% Similarity=0.430 Sum_probs=29.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCC--CCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPG--SGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~--~~~~v~v~E~~~ 44 (1129)
++|+||||||+|+++|..|++.. .|++|+|+||++
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence 47999999999999999999721 359999999953
No 288
>KOG3851|consensus
Probab=97.50 E-value=0.00034 Score=73.62 Aligned_cols=38 Identities=18% Similarity=0.394 Sum_probs=30.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
...+|+|||||.+|+++|..+.+.-..-+|.|+|-.++
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 45799999999999999988876433458999997653
No 289
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.49 E-value=0.00042 Score=85.27 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=32.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....|
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCC
Confidence 3699999999999999999999 668999999987553
No 290
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.49 E-value=0.0015 Score=80.03 Aligned_cols=37 Identities=30% Similarity=0.408 Sum_probs=32.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
+.||+|||+|.|||+||..+++ .|.+|+|+||....|
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCC
Confidence 3599999999999999999999 678999999977654
No 291
>PRK05868 hypothetical protein; Validated
Probab=97.48 E-value=0.00054 Score=79.24 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=32.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
++|+|||||++|+++|..|++ .|++|+||||.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Confidence 589999999999999999999 67999999998754
No 292
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.46 E-value=0.00051 Score=84.21 Aligned_cols=35 Identities=17% Similarity=0.386 Sum_probs=31.4
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
||+|||||.|||+||..+++ .|.+|+|+||....|
T Consensus 1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCC
Confidence 69999999999999999999 568999999977554
No 293
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.45 E-value=0.0011 Score=78.99 Aligned_cols=38 Identities=24% Similarity=0.301 Sum_probs=32.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
+||+|||||+||+.||..+++ .+.+|+|+|+....+|.
T Consensus 1 yDViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~~~~g~ 38 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNLDTIGK 38 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCCEEEEecccccccC
Confidence 489999999999999999999 66899999997554443
No 294
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.45 E-value=0.00011 Score=88.67 Aligned_cols=41 Identities=37% Similarity=0.500 Sum_probs=38.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+||+|||||.+||+||..|++ .|++|+|+||++.+||.+..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~--~G~~v~vlE~~~~~GG~~~t 42 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK--RGYRVTLLEQHAQPGGCAGT 42 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccce
Confidence 689999999999999999999 67999999999999998874
No 295
>PLN02985 squalene monooxygenase
Probab=97.44 E-value=0.0011 Score=79.48 Aligned_cols=35 Identities=20% Similarity=0.348 Sum_probs=31.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+||+|||||++|+++|..|++ .|++|+|+||..
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~~ 76 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAK--DGRRVHVIERDL 76 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHH--cCCeEEEEECcC
Confidence 35799999999999999999999 679999999974
No 296
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.44 E-value=0.0014 Score=80.37 Aligned_cols=38 Identities=16% Similarity=0.441 Sum_probs=32.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~~~g 49 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFPTRS 49 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCCC
Confidence 3699999999999999999999 5689999999765444
No 297
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.42 E-value=0.0012 Score=78.53 Aligned_cols=34 Identities=35% Similarity=0.682 Sum_probs=31.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+||+|||||.|||+||..+++ .|.+|+|+||...
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 699999999999999999999 6689999999753
No 298
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.42 E-value=0.00061 Score=82.57 Aligned_cols=38 Identities=24% Similarity=0.337 Sum_probs=33.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||.||..+++ .|.+|+|+||....||
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCC
Confidence 4799999999999999999999 5689999999876654
No 299
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.42 E-value=0.0004 Score=85.15 Aligned_cols=38 Identities=24% Similarity=0.280 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||.|||+||..+++.++|.+|+|+||.+..
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~~ 48 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANIK 48 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCcC
Confidence 36999999999999999999984237899999997654
No 300
>PLN02529 lysine-specific histone demethylase 1
Probab=97.40 E-value=0.00014 Score=89.13 Aligned_cols=43 Identities=26% Similarity=0.450 Sum_probs=39.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||+|||+||+.|++ .|++|+|||+++.+||.+..
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCccCcCceee
Confidence 45799999999999999999999 66999999999999998874
No 301
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.39 E-value=0.00012 Score=88.47 Aligned_cols=39 Identities=41% Similarity=0.559 Sum_probs=36.7
Q ss_pred EEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 12 V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
|+|||||.+||+||..|++ .|++|+|+||++.+||.+..
T Consensus 1 vvVIGaG~~GL~aA~~La~--~G~~V~VlE~~~~~GG~~~t 39 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA--AGIPVTVVEQRDKPGGRAGV 39 (502)
T ss_pred CEEECcCHHHHHHHHHHHh--CCCcEEEEECCCCCcCceEE
Confidence 6999999999999999999 67999999999999999874
No 302
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.38 E-value=0.00039 Score=85.64 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=32.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||...+|
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~~ 71 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSPR 71 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCCC
Confidence 3699999999999999999999 668999999876654
No 303
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=97.35 E-value=0.002 Score=76.08 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=35.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
...||+|||||.+|.++|..|++..++.+|+|+||.+.+|
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~a 44 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSPA 44 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCcc
Confidence 4579999999999999999999976689999999955665
No 304
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.34 E-value=0.0015 Score=80.05 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=31.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||+||..+++ . .+|+|+||....||
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~g 41 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTRS 41 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCCC
Confidence 4699999999999999999987 4 79999999765444
No 305
>PLN02676 polyamine oxidase
Probab=97.34 E-value=0.0002 Score=85.29 Aligned_cols=43 Identities=33% Similarity=0.624 Sum_probs=38.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~ 52 (1129)
...+|+|||||++||+||++|++ .|. +|+|+|+++.+||.+..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~--~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSE--AGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEecCCCCCCCccee
Confidence 35799999999999999999999 456 69999999999998875
No 306
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.33 E-value=0.00054 Score=78.58 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
+|+|||||.+|+.||..|++ .|++|+|||+++.+|
T Consensus 2 ~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~~~ 36 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPEKL 36 (433)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCcEEEEecccccc
Confidence 79999999999999999999 669999999877654
No 307
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.33 E-value=0.00047 Score=83.82 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=32.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC-cCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN-VGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~-~GG~ 49 (1129)
..||+|||||.|||+||..+ + .|.+|+|+||... .||.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~~~gG~ 45 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLFGKSGC 45 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCCCCCcc
Confidence 36999999999999999999 7 5689999999764 4553
No 308
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.32 E-value=0.00017 Score=86.12 Aligned_cols=39 Identities=31% Similarity=0.583 Sum_probs=36.4
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+|+|||||+|||+||..|.+ .|++|+|||+++.+||.+.
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~--~G~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD--AGHTPIVLEARDVLGGKVA 39 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCcc
Confidence 59999999999999999999 6699999999999999876
No 309
>KOG1276|consensus
Probab=97.32 E-value=0.00026 Score=77.89 Aligned_cols=44 Identities=36% Similarity=0.560 Sum_probs=40.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|||+|||.|||+||.+|++++++..|+|||+.+.+||-.+
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 45899999999999999999999888888999999999999666
No 310
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.31 E-value=0.00082 Score=82.26 Aligned_cols=43 Identities=30% Similarity=0.421 Sum_probs=38.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...||+|||+|.+|++||..+++ .|.+|+|+||++.+||.+.+
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~ 53 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAW--HGLKVIVVEKDPVFGGTTAW 53 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCccccc
Confidence 35799999999999999999999 66999999999888887664
No 311
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.31 E-value=0.0016 Score=79.41 Aligned_cols=41 Identities=22% Similarity=0.294 Sum_probs=35.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
.||+|||||.|||.||..+++.+++.+|+|+||....||..
T Consensus 4 ~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~~s 44 (580)
T TIGR01176 4 HDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHT 44 (580)
T ss_pred eeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCCc
Confidence 68999999999999999999866678999999987766543
No 312
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=97.30 E-value=0.00015 Score=72.51 Aligned_cols=42 Identities=36% Similarity=0.566 Sum_probs=38.1
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc-ccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWL 781 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG-~w~ 781 (1129)
.-.+++|+|+||+||.||++|.+.| ++|++|||+-.+|| .|.
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~g--~kV~i~E~~ls~GGG~w~ 71 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKAG--LKVAIFERKLSFGGGIWG 71 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhCC--ceEEEEEeecccCCcccc
Confidence 3568899999999999999999999 99999999999875 777
No 313
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.30 E-value=0.0016 Score=79.97 Aligned_cols=38 Identities=26% Similarity=0.375 Sum_probs=33.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCC
Confidence 4699999999999999999999 6689999999876554
No 314
>KOG2404|consensus
Probab=97.28 E-value=0.0013 Score=69.27 Aligned_cols=39 Identities=31% Similarity=0.591 Sum_probs=34.8
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.|+|||+|-|||+|+..+.. .+-.|+++|++..+||.-.
T Consensus 11 pvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred cEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcce
Confidence 59999999999999999998 4456999999999999764
No 315
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.27 E-value=0.00025 Score=85.39 Aligned_cols=42 Identities=31% Similarity=0.408 Sum_probs=38.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYT 53 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~ 53 (1129)
+||+|||||.+||+||..|++ .|++|+|+||++.+||.+...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~~~ 42 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV--KGAKVLVLERYLIPGGSAGYF 42 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH--CCCcEEEEECCCCCCCceeEe
Confidence 479999999999999999999 679999999999999998853
No 316
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.22 E-value=0.0018 Score=79.61 Aligned_cols=38 Identities=29% Similarity=0.422 Sum_probs=33.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||.||..+++ .|.+|+|+||....||
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~g 87 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTRS 87 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCCC
Confidence 3689999999999999999999 6689999999876553
No 317
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.17 E-value=0.00048 Score=77.29 Aligned_cols=43 Identities=30% Similarity=0.584 Sum_probs=39.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
....+|+|||||.|||+||..|.+ .|++|+|+|.++.+||-+.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccCCcCceeE
Confidence 345799999999999999999999 7799999999999999876
No 318
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.17 E-value=0.00095 Score=81.74 Aligned_cols=34 Identities=29% Similarity=0.460 Sum_probs=30.5
Q ss_pred EEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 12 V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
|+|||||.|||+||..+++ .|.+|+|+||.+.+|
T Consensus 1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~~ 34 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAPR 34 (603)
T ss_pred CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCCC
Confidence 7999999999999999999 668999999987453
No 319
>PLN02487 zeta-carotene desaturase
Probab=97.16 E-value=0.0004 Score=83.48 Aligned_cols=41 Identities=24% Similarity=0.537 Sum_probs=37.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++|+|||||++||++|..|.+ .|++|+|||+++.+||.+.
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~--~g~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRPFIGGKVG 115 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCeeEEEecCCCCCCcee
Confidence 4699999999999999999999 6699999999999999776
No 320
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=97.16 E-value=0.0018 Score=73.07 Aligned_cols=39 Identities=28% Similarity=0.394 Sum_probs=36.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
..||++||||..|-+.+..|++..+..+|+||||.+.++
T Consensus 3 ~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 3 EYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred ceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 579999999999999999999988999999999988876
No 321
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.14 E-value=0.00039 Score=82.88 Aligned_cols=40 Identities=23% Similarity=0.532 Sum_probs=36.8
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+|+|||||.+||+||..|.+ .|++|+|||+++.+||.+..
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~--~G~~v~v~E~~~~~GG~~~~ 40 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD--AGHEVDIYESRSFIGGKVGS 40 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCCceeee
Confidence 58999999999999999999 66999999999999998763
No 322
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.10 E-value=0.00047 Score=85.07 Aligned_cols=43 Identities=28% Similarity=0.476 Sum_probs=39.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||+|||+||+.|.+ .|++|+|+|+++.+||....
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~r~GGr~~t 279 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRARPGGRVKT 279 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccccCCCcccc
Confidence 35799999999999999999999 67999999999999998764
No 323
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=96.93 E-value=0.00046 Score=69.89 Aligned_cols=41 Identities=32% Similarity=0.481 Sum_probs=33.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc-ccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG-~w~ 781 (1129)
..+++|+|+||+||++|+.|.+.| ++|++||++..+|| .|.
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g--~kV~v~E~~~~~GGg~~~ 58 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAG--LKVAVIERKLSPGGGMWG 58 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHT--S-EEEEESSSS-BTTTTS
T ss_pred cCCEEEECCChhHHHHHHHHHHCC--CeEEEEecCCCCCccccc
Confidence 458899999999999999999999 99999999999986 676
No 324
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.91 E-value=0.003 Score=74.70 Aligned_cols=36 Identities=33% Similarity=0.491 Sum_probs=30.7
Q ss_pred EEcCChHHHHHHHHhhcCCCCceEEEEcccCC--cCceEe
Q psy12350 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN--VGGTWV 51 (1129)
Q Consensus 14 IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~--~GG~w~ 51 (1129)
|||+|.||++||..+++ .|.+|+|+||.+. .||.-.
T Consensus 1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~~~~Gg~s~ 38 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPRARRGGNAR 38 (432)
T ss_pred CCcccHHHHHHHHHHHh--CCCcEEEEeCCCCCcCCcCcc
Confidence 79999999999999999 5689999999874 566543
No 325
>PLN02976 amine oxidase
Probab=96.91 E-value=0.00098 Score=84.88 Aligned_cols=43 Identities=35% Similarity=0.591 Sum_probs=39.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||++|+++|..|.+ .|++|+|||+++.+||.|..
T Consensus 692 ~~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~~vGGri~t 734 (1713)
T PLN02976 692 DRKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIGGRVYT 734 (1713)
T ss_pred CCCcEEEECchHHHHHHHHHHHH--CCCcEEEEeeccCCCCceee
Confidence 35799999999999999999999 56899999999999999874
No 326
>PLN02612 phytoene desaturase
Probab=96.89 E-value=0.00089 Score=81.50 Aligned_cols=42 Identities=29% Similarity=0.510 Sum_probs=38.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+++|+|||||.+||+||.+|.+ .|++|+|+|+++.+||...
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~--~g~~~~~~e~~~~~gG~~~ 133 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLAD--AGHKPILLEARDVLGGKVA 133 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCCCCCcce
Confidence 35799999999999999999999 6699999999999999765
No 327
>KOG2820|consensus
Probab=96.89 E-value=0.0045 Score=66.28 Aligned_cols=158 Identities=15% Similarity=0.092 Sum_probs=89.6
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---C---ceEecC--CCCC---C------------C---
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---G---GTWVYT--EQTG---R------------D--- 59 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---G---G~w~~~--~~~~---~------------~--- 59 (1129)
+....+|+|||||.-|+++|..|++ .+.++.++|+.+-+ | |.-+-. .+.. + +
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~ph~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~~~~~~ 81 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLPHSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWRNLPEE 81 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCCcccCcccCcceeechhhhhHHHHHHHHHHHHHHHhChhh
Confidence 3456899999999999999999999 55999999996532 1 100000 0000 0 0
Q ss_pred ---CCCCC----ccCccc----ccccccCCccc------------cccC-CCCCCCC------CCCCCCCHHHHHHHHHH
Q psy12350 60 ---QYGLP----VHSSMY----KSLKTNLPKEI------------MELS-GYHHKGH------PDKSYIAANDVLEYLND 109 (1129)
Q Consensus 60 ---~~~~~----~~~~~y----~~l~~~~~~~~------------~~~~-d~~~~~~------~~~~~~~~~~~~~yl~~ 109 (1129)
.++++ .....+ .....|+.+.. -.|| .+++|+. ....+....+-++-+++
T Consensus 82 ~g~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~n~~gGvi~a~kslk~~~~ 161 (399)
T KOG2820|consen 82 SGVKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVVNESGGVINAAKSLKALQD 161 (399)
T ss_pred hceeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcccccccEeeHHHHHHHHHH
Confidence 01111 011111 11122221111 1333 3444442 23346677788888999
Q ss_pred HHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCCCCCcc
Q psy12350 110 FADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKA 177 (1129)
Q Consensus 110 ~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~~p 177 (1129)
++.+.|. .++.+++|..+... ..++-.+.+++.+. ..+.-+ ++|+|+|.+....+|
T Consensus 162 ~~~~~G~--i~~dg~~v~~~~~~--~e~~~~v~V~Tt~g---s~Y~ak-----kiI~t~GaWi~klL~ 217 (399)
T KOG2820|consen 162 KARELGV--IFRDGEKVKFIKFV--DEEGNHVSVQTTDG---SIYHAK-----KIIFTVGAWINKLLP 217 (399)
T ss_pred HHHHcCe--EEecCcceeeEeec--cCCCceeEEEeccC---Ceeecc-----eEEEEecHHHHhhcC
Confidence 9999887 78999999877642 22344455554322 223334 899999976655555
No 328
>PLN03000 amine oxidase
Probab=96.86 E-value=0.00089 Score=82.69 Aligned_cols=43 Identities=28% Similarity=0.493 Sum_probs=39.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||++||+||..|.+ .+++|+|+|+++.+||.+..
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~riGGRi~T 225 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRKRPGGRVYT 225 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccCcCCCCcce
Confidence 35799999999999999999999 67999999999999998873
No 329
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=96.82 E-value=0.0041 Score=61.98 Aligned_cols=40 Identities=25% Similarity=0.382 Sum_probs=32.3
Q ss_pred cccccCCchhhHHHHHHhhC---CCcceEEEcccCCc-Cccccc
Q psy12350 743 IVDRHGPGGLTATKRLTEAG---NGFTCTTFEQADNI-GGTWLY 782 (1129)
Q Consensus 743 ~iiG~G~~gl~~a~~l~~~g---~~~~v~v~E~~~~~-GG~w~~ 782 (1129)
+|||+|++|++++.+|.+.. ...+|+|||+++.- |+.|..
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~G~G~~~~~ 44 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPFGAGGAYRP 44 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCccccccCCC
Confidence 58999999999999999983 45899999996542 347763
No 330
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=96.82 E-value=0.0012 Score=77.12 Aligned_cols=44 Identities=18% Similarity=0.192 Sum_probs=40.4
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.+.+||+|||+|.+|+.+|..|.+ .|.+|.++||++..||-|..
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~--~GkkVLhlD~n~~yGG~~as 45 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSV--NGKKVLHMDRNPYYGGESAS 45 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhh--CCCEEEEecCCCCcCccccc
Confidence 345899999999999999999999 67999999999999999983
No 331
>KOG0029|consensus
Probab=96.81 E-value=0.00067 Score=80.04 Aligned_cols=44 Identities=32% Similarity=0.424 Sum_probs=39.5
Q ss_pred eeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 736 FIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 736 ~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
......|+|||||.+||+||++|.+.| ++|+|+|.++++||--+
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G--~~V~VLEARdRvGGRI~ 55 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFG--FDVLVLEARDRVGGRIY 55 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcC--CceEEEeccCCcCceeE
Confidence 345678999999999999999999999 99999999999999443
No 332
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=96.74 E-value=0.0014 Score=75.44 Aligned_cols=35 Identities=29% Similarity=0.616 Sum_probs=31.8
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
||+|||||.+|+++|..|++ .|++|+|+|++ .+|+
T Consensus 1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~-~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERG-DIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH--TTSEEEEEESS-STTS
T ss_pred CEEEECcCHHHHHHHHHHHH--CCCeEEEEeec-cccc
Confidence 79999999999999999999 67999999998 5554
No 333
>PRK12839 hypothetical protein; Provisional
Probab=96.70 E-value=0.0018 Score=78.89 Aligned_cols=43 Identities=30% Similarity=0.505 Sum_probs=39.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...+|+|||+|.+|++||..+++ .+.+|+|+||...+||.+..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~~~ 49 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAY--GGAKVLVVEKASTCGGATAW 49 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccc
Confidence 45899999999999999999999 56899999999999998874
No 334
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=96.67 E-value=0.0091 Score=69.84 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=36.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
...||+|||||..|+-+|+.++. .|++|+|+|+++--.|+-.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~--RGl~v~LvE~~D~AsGTSs 52 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAG--RGLKVALVEKGDLASGTSS 52 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHh--CCCeEEEEecCcccCcccC
Confidence 56899999999999999999999 6699999999886666544
No 335
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=96.66 E-value=0.0024 Score=72.15 Aligned_cols=29 Identities=28% Similarity=0.602 Sum_probs=25.5
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEe
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVG 899 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~ 899 (1129)
.|+|||||.+|+|.|..+|+.|.+|.++.
T Consensus 1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit 29 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARMGAKVLLIT 29 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEe
Confidence 48999999999999999999999999993
No 336
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=96.65 E-value=0.0016 Score=79.13 Aligned_cols=35 Identities=31% Similarity=0.493 Sum_probs=31.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+..+|+|||||++||++|..|++ .|++|+||||+.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 45799999999999999999999 679999999964
No 337
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=96.65 E-value=0.0018 Score=75.72 Aligned_cols=39 Identities=26% Similarity=0.400 Sum_probs=34.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
.||+|||||.+|+++|..|+++.++.+|+|+||.+.+|+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~~~ 41 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGPAR 41 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcccc
Confidence 699999999999999999999534799999999876643
No 338
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.65 E-value=0.0019 Score=79.18 Aligned_cols=42 Identities=36% Similarity=0.563 Sum_probs=37.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||||+|||+||..+++ .|.+|+|+||...+||.-.+
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~--~G~~v~llEk~~~~gG~~~~ 50 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARK--LGLDVVVLEKEPVFGGTTAF 50 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--cCCeEEEEecCCCCCCccce
Confidence 4799999999999999999999 56899999999988887653
No 339
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=96.64 E-value=0.0019 Score=73.63 Aligned_cols=35 Identities=26% Similarity=0.382 Sum_probs=31.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
++|+|||||++|++||..|++ .|++|+|+|+++..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCcc
Confidence 589999999999999999999 66999999987654
No 340
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=96.63 E-value=0.0017 Score=77.32 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=37.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||+||+|+.+|+.|++ .+++|+++|+....||.|.
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~~~~~ 40 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADSFLKI 40 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccCCCcc
Confidence 489999999999999999999 6699999999999998875
No 341
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.58 E-value=0.0018 Score=78.57 Aligned_cols=41 Identities=29% Similarity=0.483 Sum_probs=37.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||+| +|++||..+++ .|.+|+|+||.+.+||++.+
T Consensus 16 e~DvvvvG~G-~G~~aA~~a~~--~G~~v~v~Ek~~~~GG~~~~ 56 (564)
T PRK12845 16 TVDLLVVGSG-TGMAAALAAHE--LGLSVLIVEKSSYVGGSTAR 56 (564)
T ss_pred eeCEEEECCc-HHHHHHHHHHH--CCCcEEEEecCCCCcCcccC
Confidence 5799999999 89999999999 66999999999999999885
No 342
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=96.58 E-value=0.0021 Score=78.31 Aligned_cols=42 Identities=29% Similarity=0.546 Sum_probs=37.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--CcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--NVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--~~GG~w~~ 52 (1129)
..||+|||+|.|||+||..+++ .|.+|+|+||.+ .+||...+
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~s~~ 47 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQAFW 47 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCceec
Confidence 4799999999999999999999 668999999998 78886653
No 343
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=96.58 E-value=0.0061 Score=70.14 Aligned_cols=101 Identities=20% Similarity=0.302 Sum_probs=63.3
Q ss_pred eEEEEcCCccHHHHHHHHHhc--CCEEEEEecCCCCc----------cchhh----hhccccE-----EEEec-------
Q psy12350 871 QAVVVGSGQSGLDITLDIATT--GKQAVVVGSGQSGL----------DITLD----IATRAST-----VFLSH------- 922 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~--~~~V~vv~~~~~~~----------~~~~~----~~~~~~~-----~~~~~------- 922 (1129)
.|+|||||.+|+.+|..|++. +.+|.++++.+... +.... +...... .+...
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~~~l~ 80 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYRRKLK 80 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchhhhcC
Confidence 389999999999999999987 99999998865211 11100 0000000 00000
Q ss_pred -CC--------ccccccCCCCCeEEcCCeeEEeCCcEEecCCcEeeccEEEEccCccC
Q psy12350 923 -HS--------ERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSN 971 (1129)
Q Consensus 923 -~~--------~~~~~~~~~~~V~~~~~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~ 971 (1129)
.+ ...+...+..+|.....|.++++++|++.||+++.+|.||.|.|.++
T Consensus 81 ~~Y~~I~r~~f~~~l~~~l~~~i~~~~~V~~v~~~~v~l~dg~~~~A~~VI~A~G~~s 138 (370)
T TIGR01789 81 TAYRSMTSTRFHEGLLQAFPEGVILGRKAVGLDADGVDLAPGTRINARSVIDCRGFKP 138 (370)
T ss_pred CCceEEEHHHHHHHHHHhhcccEEecCEEEEEeCCEEEECCCCEEEeeEEEECCCCCC
Confidence 00 01111111223555445888888889999999999999999999664
No 344
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=96.58 E-value=0.0022 Score=77.20 Aligned_cols=41 Identities=29% Similarity=0.427 Sum_probs=34.5
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
...+||+|||||..|+++|..|++ .|++|+|+||++-.+|+
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d~~~Gt 44 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDDLAQGT 44 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCC
Confidence 345899999999999999999999 56999999998643333
No 345
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.57 E-value=0.0022 Score=78.59 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=34.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||..
T Consensus 12 ~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~~g~s 51 (598)
T PRK09078 12 KYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPTRSHT 51 (598)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCcch
Confidence 3699999999999999999999 568999999977655543
No 346
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.57 E-value=0.012 Score=66.98 Aligned_cols=42 Identities=19% Similarity=0.198 Sum_probs=34.0
Q ss_pred CccccccCCchhhHHHHHHhhCC-CcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGN-GFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~-~~~v~v~E~~~~~GG~w~~ 782 (1129)
.|+|||+|++|+.+|.+|.+.-. +..+.|||+.+++|+=-.|
T Consensus 3 ~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaY 45 (474)
T COG4529 3 KVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAY 45 (474)
T ss_pred eEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccC
Confidence 57899999999999999998653 2349999999999864333
No 347
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=96.52 E-value=0.0024 Score=76.06 Aligned_cols=40 Identities=30% Similarity=0.400 Sum_probs=35.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
...||+|||||..|+++|..|++.+++.+|+|+||.+.+|
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~a 43 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGVA 43 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCchh
Confidence 4579999999999999999999977789999999987654
No 348
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=96.47 E-value=0.0023 Score=77.14 Aligned_cols=40 Identities=30% Similarity=0.540 Sum_probs=36.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+||||| |||+||..+++ .|.+|+|+||...+||.-.
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t~ 46 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTTA 46 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCccee
Confidence 5799999999 99999999999 6699999999988888654
No 349
>PTZ00367 squalene epoxidase; Provisional
Probab=96.47 E-value=0.0026 Score=76.84 Aligned_cols=35 Identities=20% Similarity=0.319 Sum_probs=31.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||||++|+++|..|++ .|++|+|+||..
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 35799999999999999999999 679999999954
No 350
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.44 E-value=0.0032 Score=76.91 Aligned_cols=42 Identities=26% Similarity=0.514 Sum_probs=37.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
...||+|||+|.|||+||..+++ .|.+|+|+||.+.+||...
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae--~G~~VivlEk~~~~gG~t~ 51 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAA--RGLDTLVVEKSAHFGGSTA 51 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEcCCCCCchHH
Confidence 45799999999999999999999 6689999999988888544
No 351
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.43 E-value=0.0029 Score=77.02 Aligned_cols=42 Identities=33% Similarity=0.573 Sum_probs=38.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||+|.||++||..+++ .|.+|+|+||.+.+||++.+
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~~~ 47 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGSTAM 47 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceece
Confidence 4799999999999999999999 56899999999888998763
No 352
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.42 E-value=0.003 Score=76.88 Aligned_cols=42 Identities=24% Similarity=0.454 Sum_probs=38.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||+|++|++||..+++ .|.+|+|+||...+||....
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~--~G~~v~llEk~~~~gG~~~~ 48 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAH--RGLSTVVVEKAPHYGGSTAR 48 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCccccc
Confidence 5799999999999999999999 56999999999988987764
No 353
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.35 E-value=0.0021 Score=73.98 Aligned_cols=41 Identities=34% Similarity=0.452 Sum_probs=38.3
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
++|||+|.+||++|++|.+.+|+.+++|||+.+++||.-..
T Consensus 3 i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T 43 (444)
T COG1232 3 IAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRT 43 (444)
T ss_pred EEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEE
Confidence 58999999999999999999999999999999999997653
No 354
>KOG2614|consensus
Probab=96.32 E-value=0.0038 Score=69.25 Aligned_cols=35 Identities=23% Similarity=0.479 Sum_probs=32.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+|+|||||.+|+++|..|.+ .|++|+|+|++.++
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALHR--KGIDVVVLESREDP 37 (420)
T ss_pred CcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecccc
Confidence 589999999999999999999 67999999997754
No 355
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=96.32 E-value=0.0038 Score=72.61 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=31.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..||+|||||..|+++|..|++ .|++|+|+||+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccC
Confidence 3799999999999999999999 5699999999754
No 356
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.30 E-value=0.018 Score=66.12 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=29.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||||.||..||.++++ .|.++.++--+-
T Consensus 4 ~~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~~ 37 (621)
T COG0445 4 EYDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLNL 37 (621)
T ss_pred CCceEEECCCccchHHHHhhhc--cCCeEEEEEcCC
Confidence 4899999999999999999999 668888886553
No 357
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=96.29 E-value=0.0043 Score=72.46 Aligned_cols=37 Identities=32% Similarity=0.477 Sum_probs=32.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+++|+|||||.+|+++|..|++ .|.+|+++|+....
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~--~G~~V~vie~~~~~ 39 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAE--RGADVTVLEAGEAG 39 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHH--cCCEEEEEecCccC
Confidence 35899999999999999999999 55799999996643
No 358
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=96.28 E-value=0.0036 Score=74.51 Aligned_cols=38 Identities=26% Similarity=0.291 Sum_probs=33.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.||+|||||.+|+++|..|++..++.+|+|+||.+.+|
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~~a 38 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDAVA 38 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCcch
Confidence 38999999999999999999965689999999977654
No 359
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.25 E-value=0.0039 Score=76.18 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=36.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||||.|||+||..+++.+++.+|+|+||....||...
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g~s~ 46 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTV 46 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCCChh
Confidence 3699999999999999999998666789999999877666443
No 360
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.25 E-value=0.0039 Score=73.55 Aligned_cols=36 Identities=22% Similarity=0.425 Sum_probs=32.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
++|+|||||.+|+++|.+|++ .+.+|+|+||...+|
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~--~g~~V~vle~~~~~~ 36 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQ--AGHEVTVIDRQPGPA 36 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCCchh
Confidence 489999999999999999999 568999999976554
No 361
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=96.24 E-value=0.036 Score=62.29 Aligned_cols=60 Identities=10% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCCC
Q psy12350 100 ANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTL 173 (1129)
Q Consensus 100 ~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~ 173 (1129)
-.++.+.++++.+.+|. .++|+|+|+.+..+ +.+ +... ....+....+| +||+|.|+.+.
T Consensus 172 l~~vvkni~~~l~~~G~--ei~f~t~VeDi~~~----~~~-~~~v--~~~~g~~i~~~-----~vvlA~Grsg~ 231 (486)
T COG2509 172 LPKVVKNIREYLESLGG--EIRFNTEVEDIEIE----DNE-VLGV--KLTKGEEIEAD-----YVVLAPGRSGR 231 (486)
T ss_pred hHHHHHHHHHHHHhcCc--EEEeeeEEEEEEec----CCc-eEEE--EccCCcEEecC-----EEEEccCcchH
Confidence 34677788888888886 89999999988763 223 2222 22233456678 99999996543
No 362
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=96.22 E-value=0.0043 Score=72.22 Aligned_cols=34 Identities=29% Similarity=0.344 Sum_probs=30.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+||+|||||.+|+++|.+|++ .|.+|+|+||.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~--~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK--HGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence 489999999999999999999 5689999999654
No 363
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=96.18 E-value=0.0052 Score=72.96 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=34.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
...||+|||||..|+++|..|++.++..+|+|+||.+.+|
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~~a 83 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSDFA 83 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcchh
Confidence 3479999999999999999999965557999999987654
No 364
>KOG2960|consensus
Probab=96.17 E-value=0.0017 Score=64.18 Aligned_cols=42 Identities=21% Similarity=0.533 Sum_probs=37.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC-ceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG-GTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G-G~w~ 51 (1129)
-+|+|||||.|||+||....++.++.+|.|+|..-.+| |.|.
T Consensus 77 sDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 77 SDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred cceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 58999999999999999999888999999999976664 6776
No 365
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=96.16 E-value=0.0046 Score=73.80 Aligned_cols=36 Identities=17% Similarity=0.315 Sum_probs=32.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..||+|||||..|+++|.+|++.++|.+|+|+|++.
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~ 59 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL 59 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence 369999999999999999999965589999999954
No 366
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=96.08 E-value=0.0057 Score=70.77 Aligned_cols=33 Identities=21% Similarity=0.425 Sum_probs=30.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.||+|||||.+|+++|.+|++ .|.+|+|+|+..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~--~G~~V~vle~~~ 33 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR--RGLSVTVIERSS 33 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 379999999999999999999 568999999965
No 367
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=96.04 E-value=0.0045 Score=64.27 Aligned_cols=46 Identities=30% Similarity=0.370 Sum_probs=40.8
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGC 788 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~ 788 (1129)
.++|||+|++|++||..|+..| .+|+||||..-+||-....+.+++
T Consensus 3 siaIVGaGiAGl~aA~~L~~aG--~~vtV~eKg~GvGGRlAtRRl~~g 48 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREAG--REVTVFEKGRGVGGRLATRRLDGG 48 (331)
T ss_pred cEEEEccchHHHHHHHHHHhcC--cEEEEEEcCCCcccchheeccCCc
Confidence 4789999999999999999999 999999999999998776555554
No 368
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.00 E-value=0.018 Score=69.15 Aligned_cols=34 Identities=32% Similarity=0.446 Sum_probs=30.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.+|+++|..|++ .|++|+++|+++
T Consensus 16 ~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~ 49 (480)
T PRK01438 16 GLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGD 49 (480)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCc
Confidence 4689999999999999999999 668999999744
No 369
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.00 E-value=0.0061 Score=74.34 Aligned_cols=39 Identities=23% Similarity=0.435 Sum_probs=34.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||.
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~g~ 43 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTRSH 43 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCCCc
Confidence 3699999999999999999999 66899999998765553
No 370
>PRK07208 hypothetical protein; Provisional
Probab=95.98 E-value=0.0042 Score=74.80 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=40.5
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH 785 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~ 785 (1129)
...+++|||+|.+||++|..|.+.| ++|+|+|+++.+||.+.....
T Consensus 3 ~~~~vvIiGaGisGL~aA~~L~~~g--~~v~v~E~~~~~GG~~~s~~~ 48 (479)
T PRK07208 3 NKKSVVIIGAGPAGLTAAYELLKRG--YPVTVLEADPVVGGISRTVTY 48 (479)
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCCceeeeecc
Confidence 4457899999999999999999999 999999999999998764433
No 371
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=95.96 E-value=0.0038 Score=74.61 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=37.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
.++|||+|.+||+||+.|.+.|..++|+|+|+++++||.....
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~ 44 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTV 44 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEE
Confidence 4689999999999999999987558999999999999976543
No 372
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.96 E-value=0.0042 Score=74.32 Aligned_cols=46 Identities=30% Similarity=0.386 Sum_probs=40.2
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH 785 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~ 785 (1129)
..-+++|||+|..||++|..|++.| ++|+|+||++.+||.......
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G--~~V~VlE~~~~~GG~a~t~e~ 47 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAG--LKVTVLEKNDRVGGRARTFEL 47 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCC--CEEEEEEecCCCCcceEEEec
Confidence 3457899999999999999999999 999999999999996654433
No 373
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.88 E-value=0.007 Score=74.04 Aligned_cols=40 Identities=23% Similarity=0.420 Sum_probs=34.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..||+|||||.|||+||..+++ .|.+|+|+||....||..
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~g~t 46 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTRSHT 46 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCCCcc
Confidence 3699999999999999999999 678999999987666543
No 374
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=95.85 E-value=0.0074 Score=75.46 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=32.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+|+|||||.+|+++|.+|++ .|.+|+|+||...+|
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~--~G~~V~VlE~~~~~~ 296 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR--RGWQVTLYEADEAPA 296 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH--CCCeEEEEecCCCcc
Confidence 599999999999999999999 568999999976553
No 375
>PLN02268 probable polyamine oxidase
Probab=95.84 E-value=0.0046 Score=73.44 Aligned_cols=40 Identities=35% Similarity=0.478 Sum_probs=36.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.++|||+|.+||+||+.|.+.| ++|+|+|+++++||....
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~g--~~v~vlEa~~r~GGri~t 41 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDAS--FKVTLLESRDRIGGRVHT 41 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCceeee
Confidence 5789999999999999999999 999999999999996553
No 376
>PLN02463 lycopene beta cyclase
Probab=95.82 E-value=0.047 Score=64.24 Aligned_cols=103 Identities=21% Similarity=0.340 Sum_probs=61.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCc-c------c--h------hhhh-cccc-EEEEec--------CC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGL-D------I--T------LDIA-TRAS-TVFLSH--------HS 924 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~-~------~--~------~~~~-~~~~-~~~~~~--------~~ 924 (1129)
-.|+|||||.+|+-+|..|++.|.+|.++++.+... + . . ..+. .+.. .++... .+
T Consensus 29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y 108 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY 108 (447)
T ss_pred ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence 369999999999999999999999999998754211 0 0 0 0000 0000 111111 00
Q ss_pred c--------ccccc-CCCCCeEEcCC-eeEEeCC----cEEecCCcEeeccEEEEccCccCc
Q psy12350 925 E--------RVTSL-CLPNNVVLKPD-VAELTPT----GVRFQDGSYEQVDIILCCTGYSNH 972 (1129)
Q Consensus 925 ~--------~~~~~-~~~~~V~~~~~-i~~v~~~----~V~~~dG~~~~~D~VI~aTG~~~~ 972 (1129)
. ..+.. ....+|++... |.+++.+ .|.++||+++++|.||.|+|....
T Consensus 109 ~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 109 GRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRC 170 (447)
T ss_pred eeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcC
Confidence 0 00100 01225666533 6666532 278889999999999999998754
No 377
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=95.81 E-value=0.0084 Score=73.43 Aligned_cols=42 Identities=33% Similarity=0.479 Sum_probs=38.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..+|+|||+|++|++||..+++ .|.+|+|+||.+.+||.+.+
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~~ 57 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTAT 57 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCcccc
Confidence 4699999999999999999999 66999999999999998874
No 378
>PRK07233 hypothetical protein; Provisional
Probab=95.78 E-value=0.0056 Score=72.76 Aligned_cols=40 Identities=33% Similarity=0.439 Sum_probs=36.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.++|||+|.+||++|..|.+.| ++|+|+|+++.+||.+..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G--~~v~vlE~~~~~GG~~~s 40 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRG--HEVTVFEADDQLGGLAAS 40 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCceee
Confidence 3689999999999999999999 999999999999997643
No 379
>PRK07236 hypothetical protein; Provisional
Probab=95.78 E-value=0.032 Score=65.06 Aligned_cols=35 Identities=29% Similarity=0.378 Sum_probs=32.3
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
...+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 45789999999999999999999999999998865
No 380
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.77 E-value=0.008 Score=73.73 Aligned_cols=43 Identities=19% Similarity=0.323 Sum_probs=35.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCC-CceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGS-GFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~-~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||||.|||+||..+++.|. +.+|+|+||....||...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s~ 48 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHSV 48 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCce
Confidence 3689999999999999999999431 279999999887666433
No 381
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=95.75 E-value=0.0084 Score=79.21 Aligned_cols=41 Identities=24% Similarity=0.436 Sum_probs=37.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||+|.|||+||..+++ .|.+|+|+||.+.+||...
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCchh
Confidence 4799999999999999999999 6689999999998888654
No 382
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=95.75 E-value=0.0091 Score=66.80 Aligned_cols=35 Identities=29% Similarity=0.475 Sum_probs=28.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+|++|||||+||..+|.+|++.+ +.+|+|+|+...
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~-~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAG-NKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTST-TS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhCC-CCcEEEEEcccc
Confidence 58999999999999999999842 479999999764
No 383
>PRK05868 hypothetical protein; Validated
Probab=95.74 E-value=0.028 Score=64.96 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=30.7
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
++|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCC
Confidence 579999999999999999999999999998764
No 384
>PRK09077 L-aspartate oxidase; Provisional
Probab=95.73 E-value=0.01 Score=71.98 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||+|.|||+||..+++ . .+|+|+||....||.
T Consensus 8 ~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g~ 45 (536)
T PRK09077 8 QCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEGS 45 (536)
T ss_pred cCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCCC
Confidence 4699999999999999999987 4 699999998876664
No 385
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=95.73 E-value=0.0098 Score=72.29 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=31.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.+||+|||||..|+++|..|++ .|++|+|+||++
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d 39 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL--RGLRCILVERHD 39 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCC
Confidence 4799999999999999999999 569999999965
No 386
>PLN02815 L-aspartate oxidase
Probab=95.71 E-value=0.011 Score=72.16 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||.|||+||..+++ .+ +|+|+||....||.
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg~ 66 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHESN 66 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCCc
Confidence 3699999999999999999999 56 89999998877764
No 387
>KOG0685|consensus
Probab=95.69 E-value=0.0067 Score=68.35 Aligned_cols=40 Identities=33% Similarity=0.434 Sum_probs=36.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.++|||||.+||+||.+|.+.| ..+++|||..+++||--+
T Consensus 23 kIvIIGAG~AGLaAA~rLle~g-f~~~~IlEa~dRIGGRI~ 62 (498)
T KOG0685|consen 23 KIVIIGAGIAGLAAATRLLENG-FIDVLILEASDRIGGRIH 62 (498)
T ss_pred eEEEECCchHHHHHHHHHHHhC-CceEEEEEeccccCceEe
Confidence 4799999999999999999887 378999999999999655
No 388
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=95.65 E-value=0.01 Score=63.31 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=38.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
+.+|+|+|.+|+..|..|.+.| ..|.|+||++++||.+....
T Consensus 3 d~lIVGaGlsG~V~A~~a~~~g--k~VLIvekR~HIGGNaYde~ 44 (374)
T COG0562 3 DYLIVGAGLSGAVIAEVAAQLG--KRVLIVEKRNHIGGNAYDEA 44 (374)
T ss_pred cEEEECCchhHHHHHHHHHHcC--CEEEEEeccccCCCcccccc
Confidence 5689999999999999888889 99999999999999998543
No 389
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=95.63 E-value=0.0068 Score=65.47 Aligned_cols=41 Identities=32% Similarity=0.550 Sum_probs=36.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC-cccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG-GTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G-G~w~ 781 (1129)
..+++|||+|++|+++|+.|.+.| .+|+|+||+..+| |+|.
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G--~~V~vlEk~~~~Ggg~~~ 62 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNG--LKVCVLERSLAFGGGSWG 62 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCccccC
Confidence 458899999999999999999999 9999999999886 4564
No 390
>PRK06847 hypothetical protein; Provisional
Probab=95.60 E-value=0.059 Score=62.57 Aligned_cols=34 Identities=24% Similarity=0.412 Sum_probs=31.3
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
.++|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 4689999999999999999999999999998754
No 391
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.0069 Score=69.61 Aligned_cols=38 Identities=32% Similarity=0.557 Sum_probs=35.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
.|+|+|+|.+||++|+.|.+.| ++|+|+|+++.+||..
T Consensus 2 rVai~GaG~AgL~~a~~La~~g--~~vt~~ea~~~~GGk~ 39 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAG--YDVTLYEARDRLGGKV 39 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCC--CceEEEeccCccCcee
Confidence 3689999999999999999999 9999999999999943
No 392
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.51 E-value=0.013 Score=72.06 Aligned_cols=41 Identities=29% Similarity=0.407 Sum_probs=34.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..+||+|||||..|.++|..|++ .|++|+|+||++-.+|+-
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~--rGl~V~LvE~~d~a~GtS 110 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT--RGLRVGLVEREDFSSGTS 110 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccCCCcc
Confidence 34899999999999999999999 569999999976444543
No 393
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=95.49 E-value=0.0081 Score=65.12 Aligned_cols=38 Identities=34% Similarity=0.526 Sum_probs=35.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
..+++|||+|++|+++|+.|.+.| ++|+|+||+..+||
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G--~~V~liEk~~~~Gg 62 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAG--LKVAVFERKLSFGG 62 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCC--CeEEEEecCCCCCC
Confidence 468999999999999999999999 99999999988876
No 394
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=95.49 E-value=0.0086 Score=68.29 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=36.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|++|+++|..|.+.| .+|+|+|+++.+||.+..
T Consensus 3 DvvIIGaG~aGlsaA~~La~~G--~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 3 DYIIVGAGLSGIVLANILAQLN--KRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CeEEEEecCCCCCCceee
Confidence 6789999999999999999888 999999999999996553
No 395
>PLN02676 polyamine oxidase
Probab=95.47 E-value=0.0088 Score=71.44 Aligned_cols=47 Identities=32% Similarity=0.455 Sum_probs=41.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCCCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHIG 787 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~~~g 787 (1129)
..+++|||+|.+||++|++|.+.| . +|+|+|+++.+||.+....+.|
T Consensus 26 ~~~v~IIGaG~sGL~aa~~L~~~g--~~~v~vlE~~~~~GG~~~~~~~~g 73 (487)
T PLN02676 26 SPSVIIVGAGMSGISAAKTLSEAG--IEDILILEATDRIGGRMRKANFAG 73 (487)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcC--CCcEEEecCCCCCCCcceeecCCC
Confidence 346899999999999999999998 7 6999999999999888665554
No 396
>PRK07512 L-aspartate oxidase; Provisional
Probab=95.46 E-value=0.014 Score=70.27 Aligned_cols=41 Identities=24% Similarity=0.306 Sum_probs=33.4
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
||........||+|||||.|||+||..++. .+|+|+||...
T Consensus 1 ~~~~~~~~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~ 41 (513)
T PRK07512 1 MMEDLRILTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPL 41 (513)
T ss_pred CCccccCCcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCC
Confidence 555444445799999999999999999973 49999999775
No 397
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=95.45 E-value=0.013 Score=72.58 Aligned_cols=38 Identities=18% Similarity=0.234 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||.|||.||..+++ .|.+|+|+||....+|
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~~s 42 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAKRS 42 (657)
T ss_pred eccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCCCc
Confidence 3699999999999999999999 6799999999775544
No 398
>PRK07395 L-aspartate oxidase; Provisional
Probab=95.45 E-value=0.016 Score=70.26 Aligned_cols=40 Identities=20% Similarity=0.239 Sum_probs=33.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
...||+|||||.|||+||..+++ |.+|+|+||.+..||.-
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~~---G~~V~lieK~~~~gg~s 47 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLPS---HLRVGLITKDTLKTSAS 47 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhhc---CCCEEEEEccCCCCCch
Confidence 34799999999999999999853 58999999988766643
No 399
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.43 E-value=0.016 Score=68.10 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=30.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
...||+|||||..|+++|.+|++.. |. +|+|+||+.
T Consensus 29 ~~~dvvIIGgGi~G~s~A~~L~~~~-g~~~V~vle~~~ 65 (407)
T TIGR01373 29 PTYDVIIVGGGGHGLATAYYLAKEH-GITNVAVLEKGW 65 (407)
T ss_pred ccCCEEEECCcHHHHHHHHHHHHhc-CCCeEEEEEccc
Confidence 3579999999999999999999831 54 899999964
No 400
>KOG1298|consensus
Probab=95.36 E-value=0.097 Score=57.30 Aligned_cols=33 Identities=18% Similarity=0.365 Sum_probs=30.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
..||+|||||.+|-+.|..|.+ .|-+|.|+||+
T Consensus 45 ~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERD 77 (509)
T KOG1298|consen 45 AADVIIVGAGVAGSALAYALAK--DGRRVHVIERD 77 (509)
T ss_pred cccEEEECCcchHHHHHHHHhh--CCcEEEEEecc
Confidence 4789999999999999999999 56899999995
No 401
>KOG3851|consensus
Probab=95.35 E-value=0.015 Score=61.66 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=60.9
Q ss_pred eEEEEcCCccHHHHHHHHHhc-C-CEEEEEecCCCCc--cchhhhhccccEEEEecCCccccccCCCCCeEE-cCCeeEE
Q psy12350 871 QAVVVGSGQSGLDITLDIATT-G-KQAVVVGSGQSGL--DITLDIATRASTVFLSHHSERVTSLCLPNNVVL-KPDVAEL 945 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~-~-~~V~vv~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~-~~~i~~v 945 (1129)
+|+|||||.-|+-+|..+.+. + .+|-+++....-. +...-.-..++++-.+++ ...+.++.+..- +..++++
T Consensus 41 kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~~l~~srr---~~a~liP~~a~wi~ekv~~f 117 (446)
T KOG3851|consen 41 KVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLKSLDSSRR---KQASLIPKGATWIKEKVKEF 117 (446)
T ss_pred EEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchhhhhhccC---cccccccCCcHHHHHHHHhc
Confidence 699999999999999999875 3 4566665421100 000000000111111111 111122323222 2237777
Q ss_pred eC--CcEEecCCcEeeccEEEEccCccCcCCCCC
Q psy12350 946 TP--TGVRFQDGSYEQVDIILCCTGYSNHYPFLH 977 (1129)
Q Consensus 946 ~~--~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~ 977 (1129)
++ +.|++.+|++|..|.+|+|+|.+.++.-+.
T Consensus 118 ~P~~N~v~t~gg~eIsYdylviA~Giql~y~~Ik 151 (446)
T KOG3851|consen 118 NPDKNTVVTRGGEEISYDYLVIAMGIQLDYGKIK 151 (446)
T ss_pred CCCcCeEEccCCcEEeeeeEeeeeeceeccchhc
Confidence 65 559999999999999999999999876443
No 402
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=95.35 E-value=0.0089 Score=72.40 Aligned_cols=40 Identities=38% Similarity=0.432 Sum_probs=36.6
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
++|||+|.+||+||..|.+.| .+|+|+|+++.+||.....
T Consensus 1 vvVIGaG~~GL~aA~~La~~G--~~V~VlE~~~~~GG~~~t~ 40 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAG--IPVTVVEQRDKPGGRAGVL 40 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCC--CcEEEEECCCCCcCceEEE
Confidence 579999999999999999999 9999999999999976543
No 403
>PLN02576 protoporphyrinogen oxidase
Probab=95.32 E-value=0.0094 Score=72.11 Aligned_cols=40 Identities=28% Similarity=0.330 Sum_probs=36.7
Q ss_pred CccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||||.+||++|+.|.+. | ++|+|+|+++.+||....
T Consensus 14 ~v~IIGaGisGL~aA~~L~~~~g--~~v~vlEa~~rvGGr~~t 54 (496)
T PLN02576 14 DVAVVGAGVSGLAAAYALASKHG--VNVLVTEARDRVGGNITS 54 (496)
T ss_pred CEEEECcCHHHHHHHHHHHHhcC--CCEEEEecCCCCCCceeE
Confidence 689999999999999999999 8 999999999999996553
No 404
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=95.29 E-value=0.029 Score=63.78 Aligned_cols=127 Identities=11% Similarity=0.021 Sum_probs=72.6
Q ss_pred CceEEEEcccCCcC--------ceEecCCCCCCCCC--CC-CccCcccccccccCCcccccc-CC--CCCCC-CCCCCCC
Q psy12350 34 GFTCTTFEQTDNVG--------GTWVYTEQTGRDQY--GL-PVHSSMYKSLKTNLPKEIMEL-SG--YHHKG-HPDKSYI 98 (1129)
Q Consensus 34 ~~~v~v~E~~~~~G--------G~w~~~~~~~~~~~--~~-~~~~~~y~~l~~~~~~~~~~~-~d--~~~~~-~~~~~~~ 98 (1129)
|.+|+|+||++.+| |-|++++......+ .. .....+++.+....+.++++| .+ .++.. ...+-||
T Consensus 1 g~~V~ilEkn~~~GkKil~TG~GRCN~TN~~~~~~~~~~~~~~~~fl~~al~~f~~~d~~~fF~~~Gi~~~~e~~grvfP 80 (376)
T TIGR03862 1 GLEVDVFEAKPSVGRKFLMAGKSGLNLTHSEPLPRFIERYGDAAEWLAPWLEAFDAVALQDWARGLGIETFVGSSGRVFP 80 (376)
T ss_pred CCeEEEEeCCCCccceeEEcCCCCcccCCCCchHHHHHhcCCchHHHHHHHHhCCHHHHHHHHHHCCCceEECCCCEECC
Confidence 36899999999886 77777663210000 00 001123333333333333322 11 11111 1233566
Q ss_pred ---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCCCCC
Q psy12350 99 ---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPS 175 (1129)
Q Consensus 99 ---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~ 175 (1129)
..+.+++-|...+++.|+ .|+++++|+.|++ +.+.+... .......+| +||||||..+-|+
T Consensus 81 ~S~~A~sVv~~L~~~l~~~gV--~i~~~~~V~~i~~-----~~~~v~~~----~~~~~~~a~-----~vIlAtGG~s~p~ 144 (376)
T TIGR03862 81 VEMKAAPLLRAWLKRLAEQGV--QFHTRHRWIGWQG-----GTLRFETP----DGQSTIEAD-----AVVLALGGASWSQ 144 (376)
T ss_pred CCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEeC-----CcEEEEEC----CCceEEecC-----EEEEcCCCccccc
Confidence 678999999999999887 8999999999832 23444331 111235677 9999999666554
Q ss_pred c
Q psy12350 176 K 176 (1129)
Q Consensus 176 ~ 176 (1129)
.
T Consensus 145 ~ 145 (376)
T TIGR03862 145 L 145 (376)
T ss_pred c
Confidence 4
No 405
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=95.28 E-value=0.009 Score=71.61 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=36.6
Q ss_pred CccccccCCchhhHHHHHHhh----CCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEA----GNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~----g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|.+||++|+.|.+. | ++|+|+|+++++||....
T Consensus 4 ~v~VIGaGiaGL~aA~~L~~~~~~~g--~~v~vlE~~~r~GG~~~t 47 (462)
T TIGR00562 4 HVVIIGGGISGLCAAYYLEKEIPELP--VELTLVEASDRVGGKIQT 47 (462)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCC--CcEEEEEcCCcCcceEEE
Confidence 678999999999999999998 6 999999999999996653
No 406
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=95.27 E-value=0.017 Score=70.50 Aligned_cols=33 Identities=24% Similarity=0.468 Sum_probs=29.5
Q ss_pred eEEEEcCChHHHHHHHHhh----cCCCCceEEEEcccCC
Q psy12350 11 HIGVIGGGAGGLTATKRLT----EPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~----~~~~~~~v~v~E~~~~ 45 (1129)
||+|||||.|||.||..++ + .|.+|+|+||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCC
Confidence 6999999999999999998 5 5689999999664
No 407
>PRK07588 hypothetical protein; Provisional
Probab=95.26 E-value=0.043 Score=64.09 Aligned_cols=33 Identities=12% Similarity=0.324 Sum_probs=30.4
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
++|+|||||.+|+=+|..|++.|.+|+++++.+
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAP 33 (391)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCceEEEeCCC
Confidence 379999999999999999999999999998754
No 408
>PRK08071 L-aspartate oxidase; Provisional
Probab=95.24 E-value=0.018 Score=69.37 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..||+|||+|.|||+||..+++ +.+|+|+||.+..||..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g~s 41 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNSNS 41 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCCCc
Confidence 3699999999999999999975 47999999988766643
No 409
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=95.23 E-value=0.023 Score=60.42 Aligned_cols=40 Identities=33% Similarity=0.547 Sum_probs=34.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--CcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--NVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--~~GG~w 50 (1129)
..+|+|||||-|||.||..|++ .|.+|+|+|++. .+||+-
T Consensus 5 ~~dvivvgaglaglvaa~elA~--aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred cccEEEECccHHHHHHHHHHHh--cCceEEEEccccccccccee
Confidence 4799999999999999999999 679999999864 577753
No 410
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=95.16 E-value=0.012 Score=68.72 Aligned_cols=39 Identities=26% Similarity=0.470 Sum_probs=35.4
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
+.-+++|||+||+|.+||+.|++.| ++|+++||.+.+|.
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G--~~VlvlEk~~~~G~ 40 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAG--LDVLVLEKGSEPGA 40 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcC--CeEEEEecCCCCCC
Confidence 3458899999999999999999999 99999999987764
No 411
>KOG4254|consensus
Probab=95.11 E-value=0.016 Score=64.50 Aligned_cols=45 Identities=36% Similarity=0.546 Sum_probs=40.1
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYT 53 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~ 53 (1129)
++.+|++|||+|..||.||.+|++ .+.+|+++||+..+||--.+.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r--~g~~V~vlerrhv~gGaavte 56 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLAR--YGQSVAVLERRHVIGGAAVTE 56 (561)
T ss_pred CcccceEEecCCccchhHHHHHHh--cCcceEEEEEeeecCcceeee
Confidence 456899999999999999999999 779999999998888877654
No 412
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=95.10 E-value=0.021 Score=68.64 Aligned_cols=38 Identities=26% Similarity=0.466 Sum_probs=33.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+.||+|||||.|||.||..+++ .+.+|+|+||....+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCC
Confidence 45799999999999999999999 559999999976543
No 413
>PRK02106 choline dehydrogenase; Validated
Probab=95.09 E-value=0.022 Score=69.75 Aligned_cols=35 Identities=23% Similarity=0.380 Sum_probs=31.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.+|+||||||+||+.+|.+|++. ++++|+|+|+..
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~ 39 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGG 39 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCC
Confidence 48999999999999999999983 579999999975
No 414
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=95.08 E-value=0.011 Score=68.32 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=27.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
+++|||+|++||.||..+.+.| .+|+|+||++.+|
T Consensus 2 dviIIGgGaAGl~aA~~aa~~g--~~V~vlE~~~~~g 36 (409)
T PF03486_consen 2 DVIIIGGGAAGLMAAITAAEKG--ARVLVLERNKRVG 36 (409)
T ss_dssp SEEEE--SHHHHHHHHHHHHTT----EEEE-SSSSS-
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCcccc
Confidence 5789999999999999999999 9999999999886
No 415
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=94.93 E-value=0.022 Score=67.42 Aligned_cols=34 Identities=29% Similarity=0.602 Sum_probs=27.6
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~ 44 (1129)
||+|||||+||..+|..|++.+++ ++|+|+|+.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 799999999999999999996655 8999999955
No 416
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=94.90 E-value=0.016 Score=70.01 Aligned_cols=40 Identities=33% Similarity=0.361 Sum_probs=36.8
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|.+||++|..|.+.| ++|+|+|+++.+||....
T Consensus 3 dvvIIGaG~~GL~aa~~La~~G--~~v~vlE~~~~~GG~~~t 42 (492)
T TIGR02733 3 SVVVIGAGIAGLTAAALLAKRG--YRVTLLEQHAQPGGCAGT 42 (492)
T ss_pred eEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccce
Confidence 5789999999999999999999 999999999999996543
No 417
>KOG1276|consensus
Probab=94.90 E-value=0.018 Score=63.90 Aligned_cols=42 Identities=31% Similarity=0.320 Sum_probs=37.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
-.++|+|+|.+||++|++|.+.+++..+++||+.+++||-..
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwir 53 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIR 53 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceee
Confidence 357899999999999999999998888999999999999444
No 418
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=94.84 E-value=0.016 Score=69.39 Aligned_cols=41 Identities=20% Similarity=0.215 Sum_probs=35.5
Q ss_pred CccccccCCchhhHHHHHHhhC----CCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAG----NGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g----~~~~v~v~E~~~~~GG~w~ 781 (1129)
.++|||||.+||++|+.|.+.+ ...+|+|+|+++++||...
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 4789999999999999999863 2378999999999999654
No 419
>KOG2665|consensus
Probab=94.83 E-value=0.022 Score=60.31 Aligned_cols=40 Identities=20% Similarity=0.434 Sum_probs=36.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.++|++|||||.-|++.|+.|.-+.++.+|.|+|++..++
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 4689999999999999999998888899999999988764
No 420
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=94.81 E-value=0.015 Score=68.49 Aligned_cols=40 Identities=25% Similarity=0.322 Sum_probs=33.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|+|+|++|++||..+.+.| .+|+|+|+.+.+||....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G--~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAG--AKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--S-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCC--CEEEEEECCccCCCcceE
Confidence 5789999999999999999999 999999999999998763
No 421
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=94.81 E-value=0.017 Score=69.06 Aligned_cols=38 Identities=32% Similarity=0.457 Sum_probs=35.4
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
++|||+|++||++|..|.+.| ++|+|+|+++.+||.+.
T Consensus 2 v~IiGaG~aGl~aA~~L~~~G--~~v~vlE~~~~~GG~~~ 39 (453)
T TIGR02731 2 VAIAGAGLAGLSCAKYLADAG--HTPIVLEARDVLGGKVA 39 (453)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCCCcc
Confidence 689999999999999999999 99999999999999553
No 422
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.70 E-value=0.016 Score=69.67 Aligned_cols=91 Identities=23% Similarity=0.387 Sum_probs=57.2
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCCeeEEe
Q psy12350 867 FAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELT 946 (1129)
Q Consensus 867 ~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~ 946 (1129)
+.+|+|+|||+|.+|+++|..|++.|.+|+++++.+.. ... .....+. ..+|++..+
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~---------~~~------~~~~~l~---~~gv~~~~~----- 70 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDE---------RHR------ALAAILE---ALGATVRLG----- 70 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh---------hhH------HHHHHHH---HcCCEEEEC-----
Confidence 46899999999999999999999999999999763210 000 0000000 013333221
Q ss_pred CCcEEecCCcEeeccEEEEccCccCcCCCCCC--CCCeeec
Q psy12350 947 PTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE--SCGIKVV 985 (1129)
Q Consensus 947 ~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~--~~g~~~~ 985 (1129)
..+. ....+|.||.++|..++.|++.. +.|+++.
T Consensus 71 -~~~~----~~~~~D~Vv~s~Gi~~~~~~~~~a~~~gi~v~ 106 (480)
T PRK01438 71 -PGPT----LPEDTDLVVTSPGWRPDAPLLAAAADAGIPVW 106 (480)
T ss_pred -CCcc----ccCCCCEEEECCCcCCCCHHHHHHHHCCCeec
Confidence 1111 12468999999999999886542 3456553
No 423
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=94.58 E-value=0.077 Score=61.36 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCCcEEecCCceEEeCCc----EEEcCCcEEeccEEEEccCCCCC
Q psy12350 652 LPNNVVLKPDVAELTPTG----VRFQDGSYEQVDIILCCTGYTNH 692 (1129)
Q Consensus 652 ~~~~~~v~~~I~~it~~g----V~~~dG~~~~~D~VVlATGy~~~ 692 (1129)
..+++.+...+.+++.++ |++.||+++.++.||=|+|....
T Consensus 99 ~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 99 AGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred hCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence 456677777888887665 47889999999999999996544
No 424
>KOG2311|consensus
Probab=94.54 E-value=0.056 Score=60.56 Aligned_cols=30 Identities=23% Similarity=0.505 Sum_probs=27.7
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
.|+|||||-.|||.|.+.++.|++.+++..
T Consensus 30 dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~ 59 (679)
T KOG2311|consen 30 DVVVIGGGHAGCEAAAAAARLGARTLLLTH 59 (679)
T ss_pred cEEEECCCccchHHHHHHHhcCCceEEeec
Confidence 599999999999999999999999988744
No 425
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=94.49 E-value=0.039 Score=59.10 Aligned_cols=33 Identities=30% Similarity=0.660 Sum_probs=29.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
+++|+|||||-|||+||.+|.+ .|.+++|+-+.
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~g 34 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRG 34 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCC
Confidence 3799999999999999999999 66899998774
No 426
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=94.43 E-value=0.04 Score=63.31 Aligned_cols=31 Identities=23% Similarity=0.542 Sum_probs=28.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
-.|+|||||-.|+|.|...|+.|.++.++..
T Consensus 5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~ 35 (621)
T COG0445 5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTL 35 (621)
T ss_pred CceEEECCCccchHHHHhhhccCCeEEEEEc
Confidence 3699999999999999999999999988754
No 427
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=94.41 E-value=0.024 Score=61.11 Aligned_cols=41 Identities=27% Similarity=0.236 Sum_probs=34.9
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..-.++|||+|.+||+||..|.+. ++|++||.++.+||--+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~r---hdVTLfEA~~rlGGha~ 47 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSRR---HDVTLFEADRRLGGHAN 47 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhcc---cceEEEeccccccCccc
Confidence 345679999999999999998765 69999999999999433
No 428
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=94.36 E-value=0.026 Score=63.00 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=32.9
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
+++|||+|++|+++|..|.+.| .+|+|+||....+.
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g--~~v~vie~~~~~~~ 37 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKG--LRVLLLEKKSFPRY 37 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCc
Confidence 6799999999999999999999 99999999886654
No 429
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=94.31 E-value=0.025 Score=68.19 Aligned_cols=41 Identities=29% Similarity=0.315 Sum_probs=37.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
+++|||+|.+||++|..|.+.| .+|+|+||++.+||....-
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~~~ 42 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKG--AKVLVLERYLIPGGSAGYF 42 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCCCceeEe
Confidence 5789999999999999999999 9999999999999976643
No 430
>PLN02568 polyamine oxidase
Probab=94.23 E-value=0.027 Score=67.89 Aligned_cols=45 Identities=29% Similarity=0.346 Sum_probs=38.3
Q ss_pred ccCccccccCCchhhHHHHHHhhC---CCcceEEEcccCCcCcccccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAG---NGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g---~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
..+++|||+|.+||++|+.|.+.| ..++|+|||+++.+||.+...
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~ 52 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTS 52 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEE
Confidence 346899999999999999999876 137899999999999987644
No 431
>PLN02529 lysine-specific histone demethylase 1
Probab=94.16 E-value=0.027 Score=69.60 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=38.7
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
...+++|||+|++|+++|+.|.+.| ++|+|+|+++.+||....
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~t 201 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSFG--FKVVVLEGRNRPGGRVYT 201 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHcC--CcEEEEecCccCcCceee
Confidence 3457899999999999999999999 999999999999997653
No 432
>KOG2415|consensus
Probab=94.16 E-value=0.034 Score=61.16 Aligned_cols=43 Identities=26% Similarity=0.452 Sum_probs=36.1
Q ss_pred eccCccccccCCchhhHHHHHHhh----CCCcceEEEcccCCcCccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEA----GNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~----g~~~~v~v~E~~~~~GG~w 780 (1129)
..-+++|+|+||+||++|++|++. +.+++|+|+||...+||.-
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 345789999999999999998864 3468899999999999853
No 433
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=94.11 E-value=0.03 Score=66.39 Aligned_cols=42 Identities=26% Similarity=0.246 Sum_probs=36.5
Q ss_pred cCccccccCCchhhHHHHHHhhC--CCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAG--NGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g--~~~~v~v~E~~~~~GG~w~ 781 (1129)
-.++|||+|.+||+||..|.+.| +..+|+|+|+++.+||...
T Consensus 23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~ 66 (576)
T PRK13977 23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLD 66 (576)
T ss_pred CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCcc
Confidence 35689999999999999999974 2389999999999999765
No 434
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=94.05 E-value=0.031 Score=63.14 Aligned_cols=42 Identities=33% Similarity=0.531 Sum_probs=38.3
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
...+++|+|+|.+||++|..|++.| ++|+|+|.++++||-..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG--~~v~ilEar~r~GGR~~ 47 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAG--YQVQILEARDRVGGRSL 47 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcC--cEEEEEeccCCcCceeE
Confidence 4567899999999999999999999 99999999999999554
No 435
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=93.90 E-value=0.033 Score=66.51 Aligned_cols=38 Identities=26% Similarity=0.379 Sum_probs=35.1
Q ss_pred ccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 742 NIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 742 ~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
++|||+|.+|+++|..|.+.| ++|+|||+++.+||...
T Consensus 2 v~IiG~G~aGl~aA~~L~~~G--~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 2 VAIVGAGLAGLSTAVELVDAG--HEVDIYESRSFIGGKVG 39 (474)
T ss_pred EEEECCCHHHHHHHHHHHHCC--CcEEEEEecCCCCceee
Confidence 579999999999999999999 99999999999999543
No 436
>KOG2960|consensus
Probab=93.77 E-value=0.022 Score=56.61 Aligned_cols=43 Identities=21% Similarity=0.404 Sum_probs=38.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC-cccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG-GTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G-G~w~ 781 (1129)
-.+++|+|+|++||++|+.+.+..|+.+|.++|.+-..| |.|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 457899999999999999999999999999999987775 4787
No 437
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.76 E-value=0.031 Score=64.24 Aligned_cols=34 Identities=29% Similarity=0.415 Sum_probs=29.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+|+|||+|++|+++|..|.+.| ++|+||||++..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G--~~v~i~E~~~~~ 36 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAG--IDVTIIERRPDP 36 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTT--CEEEEEESSSSC
T ss_pred eEEEECCCHHHHHHHHHHHhcc--cccccchhcccc
Confidence 5789999999999999999999 999999998753
No 438
>PRK10015 oxidoreductase; Provisional
Probab=93.70 E-value=0.037 Score=65.18 Aligned_cols=36 Identities=28% Similarity=0.382 Sum_probs=33.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|++|+++|+.|.+.| ++|+|+||.+..|
T Consensus 6 ~DViIVGgGpAG~~aA~~LA~~G--~~VlliEr~~~~g 41 (429)
T PRK10015 6 FDAIVVGAGVAGSVAALVMARAG--LDVLVIERGDSAG 41 (429)
T ss_pred cCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCCC
Confidence 57899999999999999999999 9999999987654
No 439
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=93.69 E-value=0.054 Score=69.95 Aligned_cols=35 Identities=29% Similarity=0.403 Sum_probs=31.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..||+|||||.|||.||..+++ .|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccc
Confidence 4699999999999999999999 6689999999763
No 440
>PRK06753 hypothetical protein; Provisional
Probab=93.66 E-value=0.082 Score=61.30 Aligned_cols=28 Identities=18% Similarity=0.224 Sum_probs=26.7
Q ss_pred CCCCCCcccchhhhcccccEEEEccccC
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSE 292 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~ 292 (1129)
||||++|+=+|..|++.|.+|+|++|.+
T Consensus 6 vGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 6 IGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 8999999999999999999999999876
No 441
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=93.64 E-value=0.051 Score=64.24 Aligned_cols=53 Identities=19% Similarity=0.202 Sum_probs=39.8
Q ss_pred CCCceEEEeecccccceeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 720 EHPTMFILGVSFTIEEFIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 720 ~~p~l~~vG~~~~pn~~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
..|+.-.+..+..+...-+..+|+|||+||+|+++|..|.+.| ++|+|+||+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~DViIVGaGPAG~~aA~~LA~~G--~~VlllEr~~ 72 (450)
T PLN00093 20 SRPGLRVLAAAASKKLSGRKLRVAVIGGGPAGACAAETLAKGG--IETFLIERKL 72 (450)
T ss_pred ccccceeeecCCCCCcCCCCCeEEEECCCHHHHHHHHHHHhCC--CcEEEEecCC
Confidence 3455544444433333334568999999999999999999999 9999999975
No 442
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=93.63 E-value=0.063 Score=61.62 Aligned_cols=33 Identities=33% Similarity=0.685 Sum_probs=29.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+||+|||||++|+++|..+.+ .+.+|+|+|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence 479999999999999999999 568999999864
No 443
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=93.63 E-value=0.04 Score=65.01 Aligned_cols=37 Identities=22% Similarity=0.297 Sum_probs=33.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||.+.+|.
T Consensus 6 ~DViIVGaGpAG~~aA~~La~~G--~~V~llEr~~~~g~ 42 (428)
T PRK10157 6 FDAIIVGAGLAGSVAALVLAREG--AQVLVIERGNSAGA 42 (428)
T ss_pred CcEEEECcCHHHHHHHHHHHhCC--CeEEEEEcCCCCCC
Confidence 58899999999999999999999 99999999876653
No 444
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=93.62 E-value=0.04 Score=64.31 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=34.2
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
+++|||+|++|+++|..|.+.| .+|+|+|+++.+|+.+
T Consensus 1 DviIiGaG~AGl~~A~~la~~g--~~v~liE~~~~~~~~~ 38 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPG--LRVQLIEPHPPIPGNH 38 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCC--CeEEEEccCCCCCCCc
Confidence 5789999999999999999989 9999999998888643
No 445
>PLN02661 Putative thiazole synthesis
Probab=93.60 E-value=0.038 Score=61.63 Aligned_cols=41 Identities=24% Similarity=0.464 Sum_probs=35.5
Q ss_pred ccCccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCc-ccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGG-TWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG-~w~ 781 (1129)
..+++|||+|++|+.+|..|.+. | .+|+++||+..+|| .|.
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g--~kV~viEk~~~~GGG~~~ 134 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPN--VKVAIIEQSVSPGGGAWL 134 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCC--CeEEEEecCcccccceee
Confidence 45789999999999999999975 6 89999999988876 564
No 446
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=93.60 E-value=0.058 Score=65.67 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=29.3
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|++|||||+||..+|.+|.+.+ .++|+|+|+..
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~-~~~VlvlEaG~ 33 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDV-SNSVLVLEAGG 33 (532)
T ss_pred CEEEECCCchHHHHHHHhccCC-CCeEEEEecCC
Confidence 6899999999999999999942 37999999975
No 447
>PRK09126 hypothetical protein; Provisional
Probab=93.55 E-value=0.037 Score=64.70 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=32.9
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
+..+++|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGSG--LKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCc
Confidence 4568899999999999999999999 99999999874
No 448
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.37 E-value=0.067 Score=48.89 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.4
Q ss_pred CCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEe
Q psy12350 528 PFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRF 563 (1129)
Q Consensus 528 ~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~ 563 (1129)
+++||+|+|||+|..|..-+..|.+.+++|+++...
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 578999999999999999999999999999999885
No 449
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=93.35 E-value=0.074 Score=48.61 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=30.5
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
+++||+|+|||||..|..-+..|.+.|++|+++..
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~ 38 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISP 38 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEES
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECC
Confidence 46799999999999999999999999999999975
No 450
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=93.34 E-value=0.042 Score=64.01 Aligned_cols=34 Identities=18% Similarity=0.203 Sum_probs=31.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+++|||+|++|+++|..|.+.| ++|+|+||.+..
T Consensus 1 dViIvGaG~aGl~~A~~L~~~G--~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARSG--LKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcCC--CEEEEEeCCCcc
Confidence 5789999999999999999999 999999998754
No 451
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=93.34 E-value=0.092 Score=60.42 Aligned_cols=44 Identities=23% Similarity=0.273 Sum_probs=39.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC--CCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG--SGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~--~~~~v~v~E~~~~~GG~w~~ 52 (1129)
.++.=|||+|.|+|+||.+|.+.+ +|-+|+|+|+.+..||.+.-
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg 47 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDG 47 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccC
Confidence 467889999999999999999876 67899999999999998873
No 452
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=93.26 E-value=0.051 Score=67.60 Aligned_cols=44 Identities=25% Similarity=0.337 Sum_probs=39.0
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
....++|||+|.+|+++|++|.+.| ++|+|+|+++.+||.....
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~g--~~v~v~E~~~r~GGr~~t~ 280 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSMG--FKVVVLEGRARPGGRVKTM 280 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeccccCCCccccc
Confidence 3457899999999999999999999 9999999999999975543
No 453
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=93.09 E-value=0.17 Score=58.86 Aligned_cols=32 Identities=22% Similarity=0.556 Sum_probs=29.5
Q ss_pred eEEEEcCCccHHHHHHHHHhcC-CEEEEEecCC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTG-KQAVVVGSGQ 902 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~-~~V~vv~~~~ 902 (1129)
.|+|||||.+|+-+|..|++.| .+|+++++.+
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 3899999999999999999999 9999998754
No 454
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=93.08 E-value=0.055 Score=63.17 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=31.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
+++|||+||+|+++|+.|.+.| ++|+|+||+...+
T Consensus 2 ~VvIVGaGPAG~~aA~~la~~G--~~V~llE~~~~~~ 36 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLASAG--IQTFLLERKPDNA 36 (398)
T ss_pred eEEEECCcHHHHHHHHHHHhCC--CcEEEEecCCCCC
Confidence 5789999999999999999999 9999999976544
No 455
>PRK08163 salicylate hydroxylase; Provisional
Probab=93.06 E-value=0.053 Score=63.47 Aligned_cols=37 Identities=38% Similarity=0.579 Sum_probs=33.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..+++|||+|++|+++|..|.+.| ++|+||||.+.++
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g--~~v~v~Er~~~~~ 40 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQG--IKVKLLEQAAEIG 40 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCC--CcEEEEeeCcccc
Confidence 357899999999999999999999 9999999987653
No 456
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=93.06 E-value=0.15 Score=61.19 Aligned_cols=31 Identities=23% Similarity=0.533 Sum_probs=29.0
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
.|+|||+|.+|+++|..+++.|.+|.++++.
T Consensus 2 DViVIGaG~AGl~aA~ala~~G~~v~Lie~~ 32 (617)
T TIGR00136 2 DVIVIGGGHAGCEAALAAARMGAKTLLLTLN 32 (617)
T ss_pred eEEEECccHHHHHHHHHHHHCCCCEEEEecc
Confidence 4899999999999999999999999999865
No 457
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=93.02 E-value=0.049 Score=63.55 Aligned_cols=38 Identities=26% Similarity=0.410 Sum_probs=34.7
Q ss_pred cccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 743 IVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 743 ~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+|||+|++|+++|..+.+.| .+|+|+||++.+|+.+..
T Consensus 1 vIIGgG~aGl~aAi~aa~~G--~~V~llEk~~~~G~k~~~ 38 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAREG--LSVLLLEKNKKIGKKLLI 38 (400)
T ss_pred CEEEEeHHHHHHHHHHHhcC--CcEEEEecCccccccccc
Confidence 58999999999999999999 999999999999987653
No 458
>KOG2853|consensus
Probab=92.93 E-value=0.085 Score=56.61 Aligned_cols=37 Identities=27% Similarity=0.497 Sum_probs=31.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcC--CCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEP--GSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~--~~~~~v~v~E~~~~ 45 (1129)
.-+|+|||||-.|.+.|..|+++ ..|++|+|+||++.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 46899999999999999998763 24689999999763
No 459
>PLN02487 zeta-carotene desaturase
Probab=92.90 E-value=0.059 Score=65.10 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=36.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.++|||+|++|+++|..|.+.| ++|+|||+++.+||.+.
T Consensus 77 ~v~iiG~G~~Gl~~a~~L~~~g--~~v~i~E~~~~~gG~~~ 115 (569)
T PLN02487 77 KVAIIGAGLAGMSTAVELLDQG--HEVDIYESRPFIGGKVG 115 (569)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CeeEEEecCCCCCCcee
Confidence 5789999999999999999999 99999999999999654
No 460
>PRK06184 hypothetical protein; Provisional
Probab=92.76 E-value=0.064 Score=64.87 Aligned_cols=36 Identities=25% Similarity=0.354 Sum_probs=32.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+|+|||+|++|+++|..|.+.| ++|+|+||.+..
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~G--i~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRG--VSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCC
Confidence 457899999999999999999999 999999998754
No 461
>PRK06475 salicylate hydroxylase; Provisional
Probab=92.72 E-value=0.069 Score=62.57 Aligned_cols=35 Identities=26% Similarity=0.475 Sum_probs=32.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+.++|||+|++|+++|..|.+.| ++|+|+||.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G--~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARG--WAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEecCCcc
Confidence 68899999999999999999999 999999998754
No 462
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=92.70 E-value=0.06 Score=61.87 Aligned_cols=35 Identities=26% Similarity=0.460 Sum_probs=31.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
+++|||+|.+|+++|..|.+.| ++|+|+|++ .+++
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G--~~V~l~e~~-~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRG--HSVTLLERG-DIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTT--SEEEEEESS-STTS
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CeEEEEeec-cccc
Confidence 4789999999999999999999 999999998 5654
No 463
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=92.68 E-value=0.14 Score=51.07 Aligned_cols=32 Identities=28% Similarity=0.495 Sum_probs=29.4
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+|+|||||..|.++|..|.+ .+++|+++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCEEEEEeccH
Confidence 69999999999999999999 669999999854
No 464
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=92.65 E-value=0.06 Score=63.49 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=33.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
+|+|||+|.+|++||..+.+.| .+|+|+||....||.-
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~G--~~V~lvek~~~~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEAG--AKVLLVEKGPRLGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHTT--T-EEEEESSSGGGSGG
T ss_pred CEEEECCCHHHHHHHHHHhhhc--CeEEEEEeeccccccc
Confidence 5799999999999999999999 9999999999888843
No 465
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=92.65 E-value=0.11 Score=62.89 Aligned_cols=36 Identities=19% Similarity=0.428 Sum_probs=32.7
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+.|++|||+|++|-++|+.|.+ ++.+|+|+|+..
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~ 40 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGG 40 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCC
Confidence 456899999999999999999996 889999999974
No 466
>PRK07045 putative monooxygenase; Reviewed
Probab=92.63 E-value=0.061 Score=62.74 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=32.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||.+..
T Consensus 6 ~~V~IiGgGpaGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07045 6 VDVLINGSGIAGVALAHLLGARG--HSVTVVERAARN 40 (388)
T ss_pred eEEEEECCcHHHHHHHHHHHhcC--CcEEEEeCCCcc
Confidence 46899999999999999999999 999999998754
No 467
>PLN02976 amine oxidase
Probab=92.59 E-value=0.066 Score=69.06 Aligned_cols=44 Identities=36% Similarity=0.523 Sum_probs=39.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||.|....
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G--~~V~VlEa~~~vGGri~t~~ 736 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQG--FSVTVLEARSRIGGRVYTDR 736 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCC--CcEEEEeeccCCCCceeecc
Confidence 356899999999999999999999 99999999999999987653
No 468
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=92.57 E-value=0.067 Score=63.06 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=32.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
.-+++|||+|++|+++|..|.+.| ++|+|+||++..
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 53 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSG--LRIALIEAQPAE 53 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCC--CEEEEEecCCcc
Confidence 457899999999999999999999 999999998753
No 469
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=92.51 E-value=0.066 Score=62.39 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=31.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~~ 36 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQSR 36 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCC--CCEEEEECCCC
Confidence 46899999999999999999999 99999999873
No 470
>PRK08013 oxidoreductase; Provisional
Probab=92.44 E-value=0.068 Score=62.58 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=31.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+.+.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G--~~v~viE~~~~ 37 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSG--LRVAVLEQRVP 37 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCC--CEEEEEeCCCC
Confidence 57899999999999999999999 99999999875
No 471
>PLN03000 amine oxidase
Probab=92.42 E-value=0.08 Score=65.98 Aligned_cols=44 Identities=25% Similarity=0.387 Sum_probs=39.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
...++|||+|.+|+.+|..|.+.| ++|+|+|+++.+||.+....
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G--~~V~VlE~~~riGGRi~T~~ 227 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFG--FKVTVLEGRKRPGGRVYTKK 227 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CcEEEEEccCcCCCCcceec
Confidence 367899999999999999999999 99999999999999776443
No 472
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=92.41 E-value=0.082 Score=63.76 Aligned_cols=42 Identities=19% Similarity=0.313 Sum_probs=37.3
Q ss_pred eeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 736 FIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 736 ~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
+....+|+|||+|.+|+++|..+.+.| .+|+|+||.+.+||.
T Consensus 58 ~~~~~DVvVVG~G~AGl~AAi~Aa~~G--a~VivlEK~~~~GG~ 99 (506)
T PRK06481 58 LKDKYDIVIVGAGGAGMSAAIEAKDAG--MNPVILEKMPVAGGN 99 (506)
T ss_pred ccccCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCc
Confidence 334568999999999999999999999 999999999988874
No 473
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=92.37 E-value=0.072 Score=62.00 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=30.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+.+
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G--~~v~l~E~~~ 36 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQG--RSVAVIEGGE 36 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCC--CcEEEEcCCC
Confidence 47899999999999999999999 9999999864
No 474
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=92.32 E-value=0.077 Score=61.91 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=32.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+||....
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSG--LRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CeEEEEecCCCc
Confidence 457899999999999999999999 999999998764
No 475
>PRK07538 hypothetical protein; Provisional
Probab=92.29 E-value=0.076 Score=62.53 Aligned_cols=34 Identities=29% Similarity=0.484 Sum_probs=31.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
+++|||+|++|+++|..|.+.| ++|+||||.+.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G--~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRG--IEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CcEEEEEcCCcc
Confidence 5789999999999999999999 999999998754
No 476
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=92.25 E-value=0.081 Score=61.81 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=33.1
Q ss_pred cCccccccCCchhhHHHHHHhh--CCCcceEEEcccCCcCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~~GG 778 (1129)
.+++|||+|.+|+++|++|.+. | .+|+|+||...+|+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g--~~V~llE~~~~~~~ 41 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPG--ARIAVLEKESGPAR 41 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCC--CeEEEEeCCCcccc
Confidence 5789999999999999999999 7 99999999876643
No 477
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=92.23 E-value=0.082 Score=62.21 Aligned_cols=36 Identities=22% Similarity=0.314 Sum_probs=32.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|..|+++|.+|.+.| .+|+|+||++.+|
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g--~~V~vle~~~~~~ 37 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRG--YQVTVFDRHRYAA 37 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCC
Confidence 37899999999999999999999 9999999987554
No 478
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=92.18 E-value=0.073 Score=62.06 Aligned_cols=31 Identities=35% Similarity=0.453 Sum_probs=29.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA 773 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~ 773 (1129)
+++|||+||+|+++|+.|.+.| ++|+|+|++
T Consensus 2 DVvIVGaGpAG~~aA~~La~~G--~~V~l~E~~ 32 (388)
T TIGR02023 2 DVAVIGGGPSGATAAETLARAG--IETILLERA 32 (388)
T ss_pred eEEEECCCHHHHHHHHHHHhCC--CcEEEEECC
Confidence 6899999999999999999999 999999997
No 479
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=92.17 E-value=0.17 Score=50.23 Aligned_cols=34 Identities=24% Similarity=0.373 Sum_probs=31.8
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEe
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVG 899 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~ 899 (1129)
++.||+|+|||||..|...+..|.+.|++|+++.
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 5689999999999999999999999999999994
No 480
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=92.16 E-value=0.16 Score=58.16 Aligned_cols=31 Identities=35% Similarity=0.539 Sum_probs=28.7
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+|+|||+|.|||++|..|.+ . ++|+|+-|.+
T Consensus 9 dV~IiGsG~AGL~~AL~L~~--~-~~V~vltk~~ 39 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP--S-FRVTVLTKGP 39 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC--C-CcEEEEeCCC
Confidence 89999999999999999998 4 8999999965
No 481
>KOG2852|consensus
Probab=92.10 E-value=0.085 Score=55.46 Aligned_cols=44 Identities=30% Similarity=0.459 Sum_probs=35.7
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCC----CCceEEEEcccCCcCce
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~----~~~~v~v~E~~~~~GG~ 49 (1129)
+...++|+|+|||.-|..+|.+|.+++ -.+.|+|||+..-.||.
T Consensus 7 ~~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ga 54 (380)
T KOG2852|consen 7 EGNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGA 54 (380)
T ss_pred cCCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccc
Confidence 455689999999999999999999954 12689999997765543
No 482
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=92.06 E-value=0.1 Score=63.06 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=36.5
Q ss_pred eeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 736 FIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 736 ~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
|-...+++|||+| +|+++|.++.+.| .+|+|+||.+..||.-
T Consensus 4 ~d~~~DVvVVG~G-aGl~aA~~aa~~G--~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 4 WDEEVDVLVAGSG-GGVAGAYTAAREG--LSVALVEATDKFGGTT 45 (513)
T ss_pred CCCccCEEEECch-HHHHHHHHHHHCC--CcEEEEecCCCCCcce
Confidence 3345689999999 9999999999999 9999999998878743
No 483
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=91.95 E-value=0.087 Score=61.84 Aligned_cols=36 Identities=22% Similarity=0.331 Sum_probs=31.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.|+.++|+|+||.+.
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 367999999999999999999865599999999764
No 484
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.89 E-value=0.079 Score=62.00 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=31.0
Q ss_pred eccCccccccCCchhhHHHHHHhh---CCCcceEEEccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEA---GNGFTCTTFEQA 773 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~---g~~~~v~v~E~~ 773 (1129)
..-+++|||+|++|+++|..|.+. | ++|+|+||.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G--~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGG--LPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCC--CEEEEEeCC
Confidence 445789999999999999999998 9 999999995
No 485
>PRK07121 hypothetical protein; Validated
Probab=91.72 E-value=0.1 Score=62.89 Aligned_cols=40 Identities=25% Similarity=0.331 Sum_probs=36.2
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
...+|+|||+|.+|+++|.++.+.| .+|+|+||....||.
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~G--~~VillEK~~~~gG~ 58 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAAG--ARVLVLERAAGAGGA 58 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCCc
Confidence 3458899999999999999999999 999999999888874
No 486
>PLN02612 phytoene desaturase
Probab=91.66 E-value=0.1 Score=63.72 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=35.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
-.++|||+|.+|+++|..|.+.| ++++++|+++.+||.-
T Consensus 94 ~~v~iiG~G~~Gl~~a~~l~~~g--~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 94 LKVVIAGAGLAGLSTAKYLADAG--HKPILLEARDVLGGKV 132 (567)
T ss_pred CCEEEECCCHHHHHHHHHHHhcC--CeEEEEecCCCCCCcc
Confidence 35799999999999999999999 9999999999999953
No 487
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=91.61 E-value=0.1 Score=61.42 Aligned_cols=36 Identities=19% Similarity=0.281 Sum_probs=31.2
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.++|||+|++|+++|..|.+.|. ++|+||||.+.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~-~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSH-LNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCC-CCEEEEecCCcCC
Confidence 36899999999999999999871 4999999988764
No 488
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=91.60 E-value=0.093 Score=61.10 Aligned_cols=32 Identities=31% Similarity=0.444 Sum_probs=30.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA 773 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~ 773 (1129)
-+++|||+|++|+++|..|.+.| ++|+|+|+.
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G--~~V~l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAG--LDVTLLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEccC
Confidence 36899999999999999999999 999999997
No 489
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=91.59 E-value=0.094 Score=61.28 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=32.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 6 ~~dV~IvGaG~aGl~~A~~La~~G--~~v~liE~~~~ 40 (392)
T PRK08773 6 RRDAVIVGGGVVGAACALALADAG--LSVALVEGREP 40 (392)
T ss_pred CCCEEEECcCHHHHHHHHHHhcCC--CEEEEEeCCCC
Confidence 457899999999999999999999 99999999764
No 490
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=91.58 E-value=0.17 Score=58.06 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=30.0
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
++|+|||||..|+++|..|++.|.+|+++++.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~r 34 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMR 34 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc
Confidence 57999999999999999999999999999854
No 491
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=91.58 E-value=0.11 Score=59.61 Aligned_cols=40 Identities=15% Similarity=0.187 Sum_probs=36.7
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
+.-+++|||||..|+++|+.|.+.+|+.+|+|+||.+.+|
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 3458899999999999999999999999999999998876
No 492
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=91.50 E-value=0.093 Score=61.63 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=30.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
-+++|||+|++|+++|..|.+.| ++|+|+|+.+
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G--~~v~viE~~~ 35 (405)
T PRK05714 3 ADLLIVGAGMVGSALALALQGSG--LEVLLLDGGP 35 (405)
T ss_pred ccEEEECccHHHHHHHHHHhcCC--CEEEEEcCCC
Confidence 37899999999999999999999 9999999976
No 493
>PRK08244 hypothetical protein; Provisional
Probab=91.48 E-value=0.11 Score=62.67 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=31.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+|+|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 3 ~dVlIVGaGpaGl~lA~~L~~~G--~~v~viEr~~~ 36 (493)
T PRK08244 3 YEVIIIGGGPVGLMLASELALAG--VKTCVIERLKE 36 (493)
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCC
Confidence 47899999999999999999999 99999999864
No 494
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=91.45 E-value=0.1 Score=60.93 Aligned_cols=34 Identities=24% Similarity=0.326 Sum_probs=31.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||++.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G--~~v~v~E~~~~ 36 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAG--IDSVVLERRSR 36 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcC--CCEEEEEcCCc
Confidence 46899999999999999999999 99999999874
No 495
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.38 E-value=0.21 Score=51.94 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
++.||+|+|||||.+|.--+..|.+.|++|+++..
T Consensus 6 ~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 6 NLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred EcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 36799999999999999999999999999999964
No 496
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=91.35 E-value=0.12 Score=60.65 Aligned_cols=41 Identities=17% Similarity=0.109 Sum_probs=38.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|.+|+.+|..|.+.| .+|.++|+++..||.|.
T Consensus 4 ~~DViViGtGL~e~ilAa~Ls~~G--kkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 4 TYDVIVCGTGLKECILSGLLSVNG--KKVLHMDRNPYYGGESA 44 (443)
T ss_pred cceEEEECCChHHHHHHhhhhhCC--CEEEEecCCCCcCcccc
Confidence 357899999999999999999999 99999999999999887
No 497
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=91.34 E-value=0.1 Score=60.45 Aligned_cols=33 Identities=18% Similarity=0.357 Sum_probs=30.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~G--~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQKG--IKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcCC--CeEEEecCCC
Confidence 36899999999999999999999 9999999864
No 498
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=91.11 E-value=0.13 Score=63.21 Aligned_cols=41 Identities=29% Similarity=0.485 Sum_probs=36.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|.+|+++|..+.+.| .+|+|+||...+||.-.
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~G--~~v~llEk~~~~gG~~~ 49 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKLG--LDVVVLEKEPVFGGTTA 49 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC--CeEEEEecCCCCCCccc
Confidence 458899999999999999999999 99999999998887543
No 499
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=91.04 E-value=0.13 Score=60.10 Aligned_cols=35 Identities=26% Similarity=0.275 Sum_probs=32.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+.+..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G--~~v~liE~~~~~ 42 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAG--ASVALVAPEPPY 42 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCC--CeEEEEeCCCCC
Confidence 47899999999999999999999 999999998653
No 500
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.02 E-value=0.16 Score=61.83 Aligned_cols=44 Identities=20% Similarity=0.288 Sum_probs=38.7
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
....+++|||+| +|+++|..+.+.| .+|+|+||.+.+||+....
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~G--~~v~v~Ek~~~~GG~~~~~ 57 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHELG--LSVLIVEKSSYVGGSTARS 57 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHCC--CcEEEEecCCCCcCcccCc
Confidence 345689999999 8999999999999 9999999999999977643
Done!