Query psy12350
Match_columns 1129
No_of_seqs 896 out of 7260
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 16:49:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12350.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12350hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xve_A Flavin-containing monoo 100.0 8.4E-45 2.9E-49 430.0 28.7 354 741-1126 4-428 (464)
2 2xve_A Flavin-containing monoo 100.0 2.3E-41 7.9E-46 400.5 23.1 342 10-431 3-357 (464)
3 2gv8_A Monooxygenase; FMO, FAD 100.0 3.9E-38 1.3E-42 372.8 21.6 340 8-432 5-379 (447)
4 2gv8_A Monooxygenase; FMO, FAD 100.0 3.4E-35 1.2E-39 347.6 25.1 313 739-1084 6-409 (447)
5 3gwf_A Cyclohexanone monooxyge 100.0 2.2E-31 7.7E-36 319.1 19.1 352 740-1108 9-529 (540)
6 4ap3_A Steroid monooxygenase; 100.0 2.9E-31 1E-35 318.7 17.4 351 740-1108 22-543 (549)
7 3uox_A Otemo; baeyer-villiger 100.0 6.2E-30 2.1E-34 307.0 19.3 351 740-1107 10-540 (545)
8 4a9w_A Monooxygenase; baeyer-v 100.0 1.3E-28 4.3E-33 283.1 20.5 301 9-402 3-353 (357)
9 3uox_A Otemo; baeyer-villiger 100.0 9.7E-29 3.3E-33 296.6 16.8 294 446-750 80-446 (545)
10 1w4x_A Phenylacetone monooxyge 99.9 1.1E-27 3.9E-32 289.2 18.5 350 740-1108 17-538 (542)
11 3gwf_A Cyclohexanone monooxyge 99.9 6.4E-28 2.2E-32 289.1 14.8 305 8-403 7-459 (540)
12 4ap3_A Steroid monooxygenase; 99.9 1.3E-27 4.5E-32 287.0 8.5 294 446-750 92-451 (549)
13 1w4x_A Phenylacetone monooxyge 99.9 3.2E-25 1.1E-29 267.8 17.4 306 8-404 15-469 (542)
14 4a9w_A Monooxygenase; baeyer-v 99.9 4.9E-24 1.7E-28 244.8 21.4 272 739-1032 3-349 (357)
15 3itj_A Thioredoxin reductase 1 99.9 1.6E-24 5.5E-29 246.8 14.2 290 8-402 21-336 (338)
16 3d1c_A Flavin-containing putat 99.9 3.6E-24 1.2E-28 247.1 16.3 310 9-430 4-354 (369)
17 4eqs_A Coenzyme A disulfide re 99.9 2.1E-24 7.3E-29 253.1 12.6 284 10-398 1-310 (437)
18 2zbw_A Thioredoxin reductase; 99.9 2.4E-23 8.2E-28 236.8 15.9 289 8-403 4-319 (335)
19 2q7v_A Thioredoxin reductase; 99.9 6.5E-23 2.2E-27 232.1 17.4 288 5-402 4-313 (325)
20 3lzw_A Ferredoxin--NADP reduct 99.9 3.7E-23 1.2E-27 234.9 11.8 288 9-403 7-317 (332)
21 3iwa_A FAD-dependent pyridine 99.9 1.9E-23 6.5E-28 248.7 9.1 293 9-397 3-327 (472)
22 3ics_A Coenzyme A-disulfide re 99.9 1.6E-23 5.6E-28 256.3 7.9 290 8-398 35-352 (588)
23 2a87_A TRXR, TR, thioredoxin r 99.9 1.2E-22 4E-27 230.9 14.3 285 7-403 12-318 (335)
24 1vdc_A NTR, NADPH dependent th 99.9 1E-22 3.6E-27 231.3 13.9 292 8-404 7-326 (333)
25 3ab1_A Ferredoxin--NADP reduct 99.9 1.3E-22 4.4E-27 233.1 14.4 290 8-403 13-330 (360)
26 3cty_A Thioredoxin reductase; 99.9 2.9E-22 9.8E-27 226.1 16.6 283 7-402 14-317 (319)
27 3lxd_A FAD-dependent pyridine 99.9 3.6E-23 1.2E-27 242.1 9.5 269 1-380 1-289 (415)
28 4b63_A L-ornithine N5 monooxyg 99.9 3.2E-22 1.1E-26 238.5 17.0 207 9-294 39-283 (501)
29 3oc4_A Oxidoreductase, pyridin 99.9 2.4E-22 8.1E-27 237.7 15.4 259 10-379 3-282 (452)
30 3r9u_A Thioredoxin reductase; 99.9 2.5E-22 8.6E-27 226.1 14.8 285 9-402 4-313 (315)
31 3f8d_A Thioredoxin reductase ( 99.9 1.5E-22 5.1E-27 228.9 12.4 282 9-403 15-319 (323)
32 4a5l_A Thioredoxin reductase; 99.9 1.7E-22 5.9E-27 227.4 11.8 283 8-397 3-308 (314)
33 3ntd_A FAD-dependent pyridine 99.9 3.2E-23 1.1E-27 253.1 6.3 286 10-397 2-336 (565)
34 3d1c_A Flavin-containing putat 99.9 2.7E-22 9.1E-27 231.5 13.4 291 740-1048 5-352 (369)
35 2wpf_A Trypanothione reductase 99.9 6.7E-23 2.3E-27 244.4 7.5 299 7-398 5-354 (495)
36 1trb_A Thioredoxin reductase; 99.9 6.3E-22 2.2E-26 223.4 15.0 281 9-402 5-315 (320)
37 3l8k_A Dihydrolipoyl dehydroge 99.9 1E-22 3.4E-27 241.7 8.7 293 9-398 4-332 (466)
38 2q0l_A TRXR, thioredoxin reduc 99.9 7.2E-22 2.5E-26 222.0 15.0 282 10-401 2-309 (311)
39 3kd9_A Coenzyme A disulfide re 99.9 1.5E-22 5.1E-27 239.3 9.4 262 9-378 3-282 (449)
40 1fl2_A Alkyl hydroperoxide red 99.9 5.3E-22 1.8E-26 223.0 13.0 283 10-402 2-306 (310)
41 2r9z_A Glutathione amide reduc 99.9 1.6E-22 5.4E-27 239.4 8.7 290 9-398 4-326 (463)
42 2hqm_A GR, grase, glutathione 99.9 5.1E-22 1.7E-26 236.4 12.6 295 8-398 10-346 (479)
43 3klj_A NAD(FAD)-dependent dehy 99.9 4.7E-23 1.6E-27 237.0 3.4 270 6-398 6-293 (385)
44 3fbs_A Oxidoreductase; structu 99.9 1.2E-21 4.3E-26 218.4 14.8 277 10-401 3-292 (297)
45 3ef6_A Toluene 1,2-dioxygenase 99.9 8.1E-23 2.8E-27 238.3 4.0 275 10-397 3-307 (410)
46 1ges_A Glutathione reductase; 99.9 2.7E-22 9.3E-27 236.7 8.0 289 8-398 3-327 (450)
47 1onf_A GR, grase, glutathione 99.9 4E-22 1.4E-26 238.4 9.1 272 10-378 3-314 (500)
48 3ic9_A Dihydrolipoamide dehydr 99.9 7.1E-23 2.4E-27 244.2 2.2 304 9-398 8-337 (492)
49 2bc0_A NADH oxidase; flavoprot 99.9 5.6E-22 1.9E-26 236.7 9.8 283 9-397 35-359 (490)
50 4b1b_A TRXR, thioredoxin reduc 99.9 6.8E-23 2.3E-27 243.8 1.8 307 10-399 43-384 (542)
51 1xhc_A NADH oxidase /nitrite r 99.9 1.8E-22 6.1E-27 231.2 5.1 266 10-398 9-296 (367)
52 1xdi_A RV3303C-LPDA; reductase 99.8 9.8E-22 3.4E-26 235.3 11.4 306 10-398 3-341 (499)
53 4gcm_A TRXR, thioredoxin reduc 99.8 6.5E-22 2.2E-26 222.4 9.3 277 9-401 6-306 (312)
54 4b63_A L-ornithine N5 monooxyg 99.8 7E-23 2.4E-27 244.1 0.8 130 434-568 126-285 (501)
55 1mo9_A ORF3; nucleotide bindin 99.8 4.8E-22 1.6E-26 238.9 8.0 300 6-398 40-377 (523)
56 3dgh_A TRXR-1, thioredoxin red 99.8 2.9E-22 1E-26 239.0 5.8 304 8-398 8-351 (483)
57 1fec_A Trypanothione reductase 99.8 9.9E-22 3.4E-26 234.2 10.3 297 9-398 3-350 (490)
58 3qfa_A Thioredoxin reductase 1 99.8 3.2E-22 1.1E-26 240.0 5.6 308 8-398 31-379 (519)
59 2cdu_A NADPH oxidase; flavoenz 99.8 1.4E-21 4.9E-26 231.1 10.5 282 10-397 1-315 (452)
60 4dna_A Probable glutathione re 99.8 2E-21 6.7E-26 230.6 11.5 291 9-398 5-330 (463)
61 2v3a_A Rubredoxin reductase; a 99.8 2.4E-21 8.1E-26 224.2 11.6 276 9-398 4-305 (384)
62 3s5w_A L-ornithine 5-monooxyge 99.8 1.8E-21 6.2E-26 231.5 10.8 298 9-378 30-419 (463)
63 3fg2_P Putative rubredoxin red 99.8 8.3E-22 2.8E-26 229.5 7.4 258 10-380 2-279 (404)
64 3dgz_A Thioredoxin reductase 2 99.8 3.3E-22 1.1E-26 238.7 4.1 309 8-399 5-352 (488)
65 1nhp_A NADH peroxidase; oxidor 99.8 2.1E-21 7E-26 229.4 10.3 266 10-379 1-284 (447)
66 4g6h_A Rotenone-insensitive NA 99.8 8E-22 2.7E-26 234.3 6.8 298 7-400 40-400 (502)
67 3dk9_A Grase, GR, glutathione 99.8 5.6E-22 1.9E-26 236.4 5.4 293 9-399 20-356 (478)
68 1zmd_A Dihydrolipoyl dehydroge 99.8 5.2E-22 1.8E-26 236.4 4.7 298 9-398 6-344 (474)
69 1q1r_A Putidaredoxin reductase 99.8 2.1E-21 7.2E-26 227.6 9.7 263 9-380 4-288 (431)
70 3cgb_A Pyridine nucleotide-dis 99.8 2.2E-21 7.6E-26 230.9 9.2 266 10-378 37-320 (480)
71 1zk7_A HGII, reductase, mercur 99.8 5.6E-21 1.9E-25 227.0 12.5 296 8-398 3-333 (467)
72 1lvl_A Dihydrolipoamide dehydr 99.8 1.8E-21 6.2E-26 230.2 8.0 285 8-398 4-329 (458)
73 3o0h_A Glutathione reductase; 99.8 6.7E-22 2.3E-26 235.8 4.0 291 9-398 26-350 (484)
74 2gqw_A Ferredoxin reductase; f 99.8 2.5E-21 8.5E-26 225.4 8.6 256 8-380 6-277 (408)
75 1ojt_A Surface protein; redox- 99.8 1.6E-21 5.4E-26 232.5 7.0 298 8-398 5-348 (482)
76 4fk1_A Putative thioredoxin re 99.8 9.2E-21 3.2E-25 211.9 11.9 280 7-398 4-297 (304)
77 3urh_A Dihydrolipoyl dehydroge 99.8 5.3E-22 1.8E-26 237.3 1.8 297 8-398 24-362 (491)
78 2eq6_A Pyruvate dehydrogenase 99.8 1.7E-21 5.7E-26 230.9 5.8 290 9-398 6-333 (464)
79 1hyu_A AHPF, alkyl hydroperoxi 99.8 2.3E-20 8E-25 223.7 14.8 284 8-401 211-516 (521)
80 1dxl_A Dihydrolipoamide dehydr 99.8 9.1E-21 3.1E-25 225.7 11.1 295 8-398 5-341 (470)
81 2x8g_A Thioredoxin glutathione 99.8 1.2E-21 4E-26 240.2 3.4 309 8-398 106-458 (598)
82 2qae_A Lipoamide, dihydrolipoy 99.8 7.3E-21 2.5E-25 226.1 10.0 299 9-398 2-339 (468)
83 3fbs_A Oxidoreductase; structu 99.8 4.9E-21 1.7E-25 213.6 7.5 266 740-1031 3-288 (297)
84 1ebd_A E3BD, dihydrolipoamide 99.8 8.7E-21 3E-25 224.6 9.5 295 9-398 3-332 (455)
85 2a8x_A Dihydrolipoyl dehydroge 99.8 5.1E-21 1.7E-25 227.2 7.2 291 9-398 3-333 (464)
86 3lzw_A Ferredoxin--NADP reduct 99.8 9.6E-21 3.3E-25 214.9 9.1 268 739-1031 7-311 (332)
87 2yqu_A 2-oxoglutarate dehydrog 99.8 1.1E-20 3.8E-25 223.7 9.8 293 10-398 2-326 (455)
88 4gcm_A TRXR, thioredoxin reduc 99.8 2E-20 6.8E-25 210.2 11.3 274 740-1030 7-301 (312)
89 3lad_A Dihydrolipoamide dehydr 99.8 2.3E-21 7.8E-26 231.1 3.7 133 265-398 186-342 (476)
90 3itj_A Thioredoxin reductase 1 99.8 1.7E-20 5.7E-25 213.5 10.0 271 739-1031 22-331 (338)
91 2vdc_G Glutamate synthase [NAD 99.8 2.9E-21 9.9E-26 226.4 3.4 284 8-403 121-446 (456)
92 1v59_A Dihydrolipoamide dehydr 99.8 1.7E-20 5.7E-25 223.8 9.9 295 8-398 4-349 (478)
93 4eqs_A Coenzyme A disulfide re 99.8 5.4E-21 1.8E-25 224.2 4.0 280 741-1034 2-312 (437)
94 3f8d_A Thioredoxin reductase ( 99.8 1.5E-20 5.1E-25 212.4 7.3 267 740-1031 16-313 (323)
95 2q7v_A Thioredoxin reductase; 99.8 7.4E-20 2.5E-24 206.9 12.3 270 739-1032 8-309 (325)
96 1onf_A GR, grase, glutathione 99.8 7.6E-20 2.6E-24 218.6 12.9 268 740-1033 3-371 (500)
97 3r9u_A Thioredoxin reductase; 99.8 3.6E-20 1.2E-24 208.5 8.9 268 740-1031 5-308 (315)
98 3urh_A Dihydrolipoyl dehydroge 99.8 2.3E-20 7.8E-25 223.1 7.6 278 737-1034 23-364 (491)
99 2q0l_A TRXR, thioredoxin reduc 99.8 1.8E-19 6.2E-24 202.3 13.9 268 741-1031 3-305 (311)
100 4b1b_A TRXR, thioredoxin reduc 99.8 5.3E-21 1.8E-25 227.5 1.3 184 835-1033 192-384 (542)
101 2zbw_A Thioredoxin reductase; 99.8 2.9E-20 1E-24 211.2 7.3 272 740-1031 6-313 (335)
102 3ef6_A Toluene 1,2-dioxygenase 99.8 2.7E-20 9.4E-25 216.9 7.0 276 741-1034 4-310 (410)
103 3dk9_A Grase, GR, glutathione 99.8 6.5E-20 2.2E-24 218.5 8.4 272 738-1033 19-356 (478)
104 3cty_A Thioredoxin reductase; 99.8 4.8E-19 1.7E-23 199.6 14.4 268 739-1031 16-312 (319)
105 3oc4_A Oxidoreductase, pyridin 99.8 2.4E-19 8.3E-24 211.8 12.0 265 741-1033 4-314 (452)
106 3k30_A Histamine dehydrogenase 99.8 1.7E-20 5.9E-25 232.7 2.2 258 8-403 390-677 (690)
107 1zmd_A Dihydrolipoyl dehydroge 99.8 5E-20 1.7E-24 219.2 5.9 273 740-1033 7-345 (474)
108 4dna_A Probable glutathione re 99.8 5.7E-20 2E-24 217.9 6.2 269 740-1033 6-331 (463)
109 1xdi_A RV3303C-LPDA; reductase 99.8 2.3E-19 8E-24 214.7 11.2 185 833-1033 149-342 (499)
110 1m6i_A Programmed cell death p 99.8 3.9E-20 1.3E-24 220.4 4.3 296 6-398 8-351 (493)
111 1vdc_A NTR, NADPH dependent th 99.8 7.5E-19 2.6E-23 199.4 14.7 280 739-1039 8-331 (333)
112 1xhc_A NADH oxidase /nitrite r 99.8 3.3E-20 1.1E-24 212.3 3.4 263 739-1033 8-297 (367)
113 3ab1_A Ferredoxin--NADP reduct 99.8 1.5E-19 5.1E-24 207.5 8.7 273 739-1031 14-324 (360)
114 1mo9_A ORF3; nucleotide bindin 99.8 1E-19 3.4E-24 218.7 7.5 270 739-1033 43-378 (523)
115 3dgh_A TRXR-1, thioredoxin red 99.8 8E-20 2.7E-24 217.9 6.5 184 832-1033 154-352 (483)
116 3h8l_A NADH oxidase; membrane 99.8 9E-20 3.1E-24 213.0 6.7 281 10-400 2-335 (409)
117 3l8k_A Dihydrolipoyl dehydroge 99.8 6.7E-20 2.3E-24 217.4 5.2 265 740-1033 5-333 (466)
118 2r9z_A Glutathione amide reduc 99.8 7E-20 2.4E-24 216.7 5.2 270 740-1033 5-327 (463)
119 2bc0_A NADH oxidase; flavoprot 99.8 1.6E-19 5.4E-24 215.5 8.3 276 740-1034 36-362 (490)
120 2a87_A TRXR, TR, thioredoxin r 99.8 4.7E-19 1.6E-23 201.1 11.5 270 739-1031 14-312 (335)
121 1lvl_A Dihydrolipoamide dehydr 99.8 3.4E-19 1.2E-23 210.6 10.6 270 739-1033 5-330 (458)
122 2wpf_A Trypanothione reductase 99.8 1.6E-19 5.6E-24 215.1 7.8 183 833-1033 160-355 (495)
123 3qfa_A Thioredoxin reductase 1 99.8 1.7E-19 5.8E-24 216.3 8.0 272 740-1033 33-380 (519)
124 2gqw_A Ferredoxin reductase; f 99.8 1.6E-19 5.4E-24 210.2 7.4 274 740-1034 8-309 (408)
125 2hqm_A GR, grase, glutathione 99.8 1.2E-19 4.2E-24 215.8 6.4 270 740-1033 12-347 (479)
126 3dgz_A Thioredoxin reductase 2 99.8 1.1E-19 3.9E-24 216.7 6.1 272 740-1033 7-352 (488)
127 3lad_A Dihydrolipoamide dehydr 99.8 1.7E-19 5.8E-24 214.9 7.5 188 831-1034 145-344 (476)
128 3ic9_A Dihydrolipoamide dehydr 99.8 8.3E-20 2.9E-24 217.7 4.6 271 740-1032 9-337 (492)
129 3fg2_P Putative rubredoxin red 99.8 4.1E-19 1.4E-23 206.8 10.3 276 741-1034 3-311 (404)
130 2qae_A Lipoamide, dihydrolipoy 99.8 9E-20 3.1E-24 216.7 4.5 273 741-1033 4-340 (468)
131 1trb_A Thioredoxin reductase; 99.8 4.9E-19 1.7E-23 199.7 10.2 272 739-1031 5-310 (320)
132 4a5l_A Thioredoxin reductase; 99.8 4.5E-19 1.5E-23 199.4 9.8 258 740-1029 5-306 (314)
133 1ges_A Glutathione reductase; 99.8 1.7E-19 5.7E-24 212.8 6.4 270 740-1033 5-328 (450)
134 3kd9_A Coenzyme A disulfide re 99.8 4.3E-19 1.5E-23 209.6 9.8 271 740-1034 4-316 (449)
135 1lqt_A FPRA; NADP+ derivative, 99.8 1.1E-19 3.7E-24 213.5 4.4 276 9-402 3-388 (456)
136 1fec_A Trypanothione reductase 99.8 1.2E-19 4.2E-24 216.1 4.6 183 833-1033 156-351 (490)
137 3o0h_A Glutathione reductase; 99.8 1.5E-19 5.1E-24 215.5 5.3 270 740-1033 27-351 (484)
138 1dxl_A Dihydrolipoamide dehydr 99.8 4.8E-19 1.6E-23 210.8 9.4 273 740-1033 7-342 (470)
139 2yqu_A 2-oxoglutarate dehydrog 99.8 2.2E-19 7.6E-24 212.5 6.3 272 741-1033 3-327 (455)
140 1fl2_A Alkyl hydroperoxide red 99.8 2E-18 6.8E-23 193.7 13.7 267 741-1031 3-301 (310)
141 3ics_A Coenzyme A-disulfide re 99.8 3.5E-19 1.2E-23 217.9 7.9 275 738-1032 35-352 (588)
142 1ps9_A 2,4-dienoyl-COA reducta 99.8 8.8E-19 3E-23 216.9 11.0 241 8-395 372-670 (671)
143 3lxd_A FAD-dependent pyridine 99.8 2.2E-19 7.7E-24 209.9 5.2 272 740-1034 10-322 (415)
144 3iwa_A FAD-dependent pyridine 99.8 3E-19 1E-23 212.5 6.2 276 740-1034 4-330 (472)
145 1cjc_A Protein (adrenodoxin re 99.8 3.2E-19 1.1E-23 209.8 5.9 110 8-182 5-115 (460)
146 3klj_A NAD(FAD)-dependent dehy 99.8 4.5E-20 1.6E-24 212.1 -1.4 261 738-1034 8-295 (385)
147 2eq6_A Pyruvate dehydrogenase 99.8 3.6E-19 1.2E-23 210.9 6.2 272 740-1034 7-335 (464)
148 1v59_A Dihydrolipoamide dehydr 99.7 5.8E-19 2E-23 210.4 7.8 271 740-1033 6-350 (478)
149 1zk7_A HGII, reductase, mercur 99.7 1E-18 3.5E-23 207.5 9.8 271 740-1033 5-334 (467)
150 2a8x_A Dihydrolipoyl dehydroge 99.7 5.6E-19 1.9E-23 209.6 7.3 270 740-1032 4-333 (464)
151 1ebd_A E3BD, dihydrolipoamide 99.7 6.9E-19 2.4E-23 208.2 8.0 271 740-1033 4-333 (455)
152 1o94_A Tmadh, trimethylamine d 99.7 3E-19 1E-23 222.3 3.9 261 8-400 388-699 (729)
153 2gag_A Heterotetrameric sarcos 99.7 1.8E-18 6.2E-23 221.0 10.7 284 9-400 128-443 (965)
154 1ojt_A Surface protein; redox- 99.7 6.3E-19 2.2E-23 210.0 5.9 271 740-1033 7-349 (482)
155 2cdu_A NADPH oxidase; flavoenz 99.7 6.1E-19 2.1E-23 208.5 5.6 276 741-1034 2-318 (452)
156 2vdc_G Glutamate synthase [NAD 99.7 4.1E-18 1.4E-22 199.7 11.7 260 740-1031 123-440 (456)
157 2v3a_A Rubredoxin reductase; a 99.7 1.1E-18 3.8E-23 201.7 5.4 269 740-1033 5-306 (384)
158 3ntd_A FAD-dependent pyridine 99.7 5.8E-19 2E-23 215.3 2.8 275 741-1034 3-339 (565)
159 3sx6_A Sulfide-quinone reducta 99.7 2.6E-18 8.8E-23 202.1 7.7 285 10-403 5-346 (437)
160 4fk1_A Putative thioredoxin re 99.7 7.2E-18 2.5E-22 188.4 10.4 265 736-1030 3-295 (304)
161 1q1r_A Putidaredoxin reductase 99.7 2E-18 6.9E-23 202.2 5.4 272 740-1034 5-320 (431)
162 1hyu_A AHPF, alkyl hydroperoxi 99.7 3.4E-17 1.2E-21 196.2 15.8 266 740-1030 213-511 (521)
163 3hyw_A Sulfide-quinone reducta 99.7 1.5E-18 5E-23 203.5 3.6 99 302-403 216-335 (430)
164 3cgb_A Pyridine nucleotide-dis 99.7 3.2E-18 1.1E-22 203.7 6.0 273 741-1033 38-353 (480)
165 1nhp_A NADH peroxidase; oxidor 99.7 4.1E-18 1.4E-22 201.1 6.0 272 741-1034 2-317 (447)
166 2x8g_A Thioredoxin glutathione 99.7 3.6E-18 1.2E-22 209.2 5.5 184 832-1033 253-459 (598)
167 3k30_A Histamine dehydrogenase 99.7 4E-18 1.4E-22 211.5 5.3 257 740-1034 392-674 (690)
168 1o94_A Tmadh, trimethylamine d 99.7 3.8E-18 1.3E-22 212.4 2.2 260 740-1033 390-698 (729)
169 1lqt_A FPRA; NADP+ derivative, 99.7 6.3E-17 2.1E-21 190.0 11.4 277 740-1031 4-383 (456)
170 1y56_A Hypothetical protein PH 99.7 2.6E-17 8.8E-22 196.0 6.6 260 9-399 108-375 (493)
171 1gte_A Dihydropyrimidine dehyd 99.7 9.9E-18 3.4E-22 215.8 3.2 284 9-401 187-508 (1025)
172 3h28_A Sulfide-quinone reducta 99.7 6.3E-18 2.2E-22 198.4 -0.0 137 265-403 148-335 (430)
173 3vrd_B FCCB subunit, flavocyto 99.6 7.8E-17 2.7E-21 187.7 7.7 128 273-403 171-326 (401)
174 1cjc_A Protein (adrenodoxin re 99.6 4.8E-16 1.6E-20 182.7 13.9 278 741-1031 8-391 (460)
175 3h8l_A NADH oxidase; membrane 99.6 5.1E-17 1.7E-21 189.6 3.0 270 741-1033 3-334 (409)
176 1m6i_A Programmed cell death p 99.6 6.8E-17 2.3E-21 192.4 4.1 185 835-1034 139-353 (493)
177 1ps9_A 2,4-dienoyl-COA reducta 99.6 1.1E-16 3.7E-21 198.1 5.7 259 740-1030 374-671 (671)
178 4g6h_A Rotenone-insensitive NA 99.6 2E-17 7E-22 196.4 -2.5 191 831-1037 160-403 (502)
179 3s5w_A L-ornithine 5-monooxyge 99.6 2.7E-16 9.4E-21 186.8 7.1 190 835-1030 187-444 (463)
180 3sx6_A Sulfide-quinone reducta 99.6 3.2E-16 1.1E-20 184.2 2.8 271 740-1031 5-340 (437)
181 1gte_A Dihydropyrimidine dehyd 99.6 9.1E-15 3.1E-19 188.3 13.9 267 740-1031 188-504 (1025)
182 2gag_A Heterotetrameric sarcos 99.5 6.1E-16 2.1E-20 197.7 0.6 260 739-1031 128-440 (965)
183 3h28_A Sulfide-quinone reducta 99.5 4E-15 1.4E-19 174.5 -0.7 272 740-1031 3-329 (430)
184 1y56_A Hypothetical protein PH 99.4 7.4E-14 2.5E-18 166.1 5.5 243 739-1035 108-377 (493)
185 3vrd_B FCCB subunit, flavocyto 99.3 5.5E-13 1.9E-17 155.1 5.2 274 741-1031 4-320 (401)
186 3hyw_A Sulfide-quinone reducta 99.3 4.6E-13 1.6E-17 156.7 4.3 273 741-1031 4-329 (430)
187 2ywl_A Thioredoxin reductase r 99.1 1.2E-10 4E-15 118.6 6.7 156 871-1032 3-168 (180)
188 2gqf_A Hypothetical protein HI 99.0 6.3E-10 2.2E-14 128.2 8.0 151 9-175 4-171 (401)
189 3fpz_A Thiazole biosynthetic e 98.8 1.5E-10 5.1E-15 130.1 -3.9 44 9-52 65-108 (326)
190 3fpz_A Thiazole biosynthetic e 98.8 5.1E-11 1.7E-15 134.0 -8.6 148 739-900 65-214 (326)
191 3v76_A Flavoprotein; structura 98.7 2.9E-08 1E-12 114.6 10.8 150 8-175 26-190 (417)
192 2ywl_A Thioredoxin reductase r 98.6 2.4E-07 8.1E-12 93.9 12.6 113 10-178 2-114 (180)
193 2bry_A NEDD9 interacting prote 98.6 1.4E-07 4.8E-12 111.9 12.0 142 8-174 91-232 (497)
194 3cgv_A Geranylgeranyl reductas 98.6 8.5E-08 2.9E-12 110.9 8.7 149 9-172 4-162 (397)
195 3oz2_A Digeranylgeranylglycero 98.5 2.1E-07 7.2E-12 107.4 10.0 148 8-172 3-162 (397)
196 3ces_A MNMG, tRNA uridine 5-ca 98.5 2.1E-07 7.1E-12 111.0 10.0 37 9-47 28-65 (651)
197 2cul_A Glucose-inhibited divis 98.5 4.8E-07 1.6E-11 95.8 11.5 124 9-175 3-128 (232)
198 3e1t_A Halogenase; flavoprotei 98.5 3.5E-07 1.2E-11 109.2 11.1 152 8-172 6-172 (512)
199 3nix_A Flavoprotein/dehydrogen 98.5 4.4E-07 1.5E-11 105.8 11.7 147 9-172 5-166 (421)
200 3qj4_A Renalase; FAD/NAD(P)-bi 98.5 1.4E-07 4.8E-12 106.6 7.2 43 10-52 2-45 (342)
201 2cul_A Glucose-inhibited divis 98.5 1.8E-07 6.1E-12 99.1 7.4 163 870-1032 4-229 (232)
202 3nlc_A Uncharacterized protein 98.4 5.5E-07 1.9E-11 106.8 10.7 36 9-46 107-142 (549)
203 2i0z_A NAD(FAD)-utilizing dehy 98.4 1.9E-07 6.4E-12 109.6 6.0 149 9-174 26-193 (447)
204 1rp0_A ARA6, thiazole biosynth 98.4 1.5E-06 5.1E-11 95.1 12.5 40 9-49 39-78 (284)
205 3fmw_A Oxygenase; mithramycin, 98.3 1.3E-06 4.6E-11 105.0 12.1 145 9-172 49-207 (570)
206 3c96_A Flavin-containing monoo 98.3 7.5E-07 2.6E-11 103.3 9.6 145 9-172 4-169 (410)
207 2e5v_A L-aspartate oxidase; ar 98.3 2.7E-06 9.3E-11 100.1 14.3 36 11-49 1-36 (472)
208 3ihg_A RDME; flavoenzyme, anth 98.3 1.7E-06 5.9E-11 104.0 12.0 153 9-172 5-183 (535)
209 3dme_A Conserved exported prot 98.3 1.5E-06 5.1E-11 99.1 10.9 37 9-47 4-40 (369)
210 1yvv_A Amine oxidase, flavin-c 98.3 1.6E-06 5.4E-11 97.6 10.9 41 10-52 3-43 (336)
211 3c4a_A Probable tryptophan hyd 98.3 9.9E-07 3.4E-11 101.2 8.9 134 10-173 1-144 (381)
212 3i3l_A Alkylhalidase CMLS; fla 98.3 1.5E-06 5.3E-11 104.6 10.7 153 7-172 21-188 (591)
213 3alj_A 2-methyl-3-hydroxypyrid 98.3 1.8E-06 6.1E-11 99.0 10.6 137 8-172 10-160 (379)
214 2x3n_A Probable FAD-dependent 98.3 2.3E-06 7.7E-11 98.9 11.5 147 9-172 6-166 (399)
215 2xdo_A TETX2 protein; tetracyc 98.3 2.6E-06 9E-11 98.3 12.0 142 8-173 25-183 (398)
216 2zxi_A TRNA uridine 5-carboxym 98.3 1.1E-06 3.6E-11 104.5 8.6 38 9-48 27-65 (637)
217 2gmh_A Electron transfer flavo 98.3 3.3E-06 1.1E-10 102.1 12.9 154 9-172 35-217 (584)
218 1y0p_A Fumarate reductase flav 98.3 3.4E-06 1.2E-10 102.1 12.8 41 9-51 126-166 (571)
219 2qa1_A PGAE, polyketide oxygen 98.3 2.4E-06 8.2E-11 101.4 11.2 150 6-172 8-165 (500)
220 3kkj_A Amine oxidase, flavin-c 98.2 4.2E-07 1.4E-11 99.4 4.3 40 10-51 3-42 (336)
221 1qo8_A Flavocytochrome C3 fuma 98.2 3.2E-06 1.1E-10 102.2 12.3 39 9-49 121-159 (566)
222 2r0c_A REBC; flavin adenine di 98.2 5.9E-06 2E-10 99.4 14.5 146 9-172 26-196 (549)
223 3rp8_A Flavoprotein monooxygen 98.2 7.8E-07 2.7E-11 103.1 6.5 144 8-172 22-181 (407)
224 2vou_A 2,6-dihydroxypyridine h 98.2 3.1E-06 1.1E-10 97.6 10.9 140 8-172 4-153 (397)
225 2qa2_A CABE, polyketide oxygen 98.2 3.4E-06 1.2E-10 100.0 11.3 148 8-172 11-166 (499)
226 3jsk_A Cypbp37 protein; octame 98.2 1.8E-06 6.3E-11 95.1 7.8 41 9-49 79-119 (344)
227 3atr_A Conserved archaeal prot 98.2 1.6E-06 5.3E-11 102.0 7.4 147 9-172 6-162 (453)
228 1ryi_A Glycine oxidase; flavop 98.2 6.2E-06 2.1E-10 94.5 12.3 38 8-47 16-53 (382)
229 2gjc_A Thiazole biosynthetic e 98.2 4E-06 1.4E-10 91.9 9.5 41 10-50 66-107 (326)
230 3ps9_A TRNA 5-methylaminomethy 98.1 6.6E-06 2.2E-10 101.8 10.7 37 9-47 272-308 (676)
231 3da1_A Glycerol-3-phosphate de 98.1 9.4E-06 3.2E-10 97.6 11.7 41 8-50 17-57 (561)
232 1k0i_A P-hydroxybenzoate hydro 98.1 3.3E-06 1.1E-10 97.3 7.4 149 10-173 3-164 (394)
233 1d4d_A Flavocytochrome C fumar 98.1 1.5E-05 5.1E-10 96.2 13.1 41 9-51 126-166 (572)
234 4at0_A 3-ketosteroid-delta4-5a 98.1 6.9E-06 2.4E-10 97.9 9.7 40 9-50 41-80 (510)
235 3dje_A Fructosyl amine: oxygen 98.1 9.8E-06 3.3E-10 94.8 10.8 40 8-49 5-45 (438)
236 1y56_B Sarcosine oxidase; dehy 98.0 1.3E-05 4.5E-10 91.8 11.6 36 9-47 5-40 (382)
237 3cp8_A TRNA uridine 5-carboxym 98.0 1.3E-05 4.3E-10 95.8 11.2 40 8-49 20-60 (641)
238 2uzz_A N-methyl-L-tryptophan o 98.0 1.1E-05 3.8E-10 92.0 10.3 35 10-46 3-37 (372)
239 3pvc_A TRNA 5-methylaminomethy 98.0 2.3E-05 7.8E-10 97.0 13.4 37 9-47 264-300 (689)
240 3nyc_A D-arginine dehydrogenas 98.0 7.2E-06 2.5E-10 93.9 8.2 37 8-47 8-44 (381)
241 4gde_A UDP-galactopyranose mut 98.0 4E-06 1.4E-10 100.4 5.3 42 9-51 10-51 (513)
242 2dkh_A 3-hydroxybenzoate hydro 98.0 3.9E-05 1.3E-09 93.9 14.1 156 9-172 32-211 (639)
243 2bcg_G Secretory pathway GDP d 97.9 6.8E-06 2.3E-10 96.3 4.9 47 4-52 6-52 (453)
244 2e1m_A L-glutamate oxidase; L- 97.9 8.6E-06 3E-10 91.7 5.2 44 7-52 42-86 (376)
245 2qcu_A Aerobic glycerol-3-phos 97.9 4.6E-05 1.6E-09 90.5 11.6 38 9-48 3-40 (501)
246 4dgk_A Phytoene dehydrogenase; 97.8 6.2E-06 2.1E-10 98.4 3.7 40 10-51 2-41 (501)
247 2b9w_A Putative aminooxidase; 97.8 1.8E-05 6.1E-10 92.2 7.1 42 8-51 5-47 (424)
248 2gag_B Heterotetrameric sarcos 97.8 7.7E-05 2.6E-09 86.1 12.4 38 9-48 21-59 (405)
249 1v0j_A UDP-galactopyranose mut 97.8 8.9E-06 3E-10 93.6 4.0 45 7-52 5-49 (399)
250 2gf3_A MSOX, monomeric sarcosi 97.8 7.2E-05 2.5E-09 85.8 11.5 37 9-47 3-39 (389)
251 1rsg_A FMS1 protein; FAD bindi 97.8 1.2E-05 4E-10 96.2 4.3 42 8-51 7-49 (516)
252 2wdq_A Succinate dehydrogenase 97.7 0.00019 6.6E-09 86.5 14.3 36 9-46 7-42 (588)
253 3hdq_A UDP-galactopyranose mut 97.7 2.2E-05 7.4E-10 89.2 4.9 42 8-51 28-69 (397)
254 3k7m_X 6-hydroxy-L-nicotine ox 97.7 1.8E-05 6.2E-10 92.3 4.2 41 10-52 2-42 (431)
255 1s3e_A Amine oxidase [flavin-c 97.7 1.8E-05 6.3E-10 94.7 4.2 41 9-51 4-44 (520)
256 1kf6_A Fumarate reductase flav 97.7 0.0001 3.4E-09 89.2 10.6 38 9-46 5-42 (602)
257 2h88_A Succinate dehydrogenase 97.7 0.00013 4.5E-09 88.0 11.4 36 9-46 18-53 (621)
258 3nrn_A Uncharacterized protein 97.7 2.2E-05 7.6E-10 91.2 4.5 40 10-51 1-40 (421)
259 1pn0_A Phenol 2-monooxygenase; 97.6 8.8E-05 3E-09 90.9 9.8 36 9-46 8-48 (665)
260 1pj5_A N,N-dimethylglycine oxi 97.6 8.7E-05 3E-09 93.9 10.1 35 9-45 4-39 (830)
261 2jae_A L-amino acid oxidase; o 97.6 3.8E-05 1.3E-09 91.2 6.2 43 7-51 9-51 (489)
262 3c4n_A Uncharacterized protein 97.6 8.3E-05 2.8E-09 85.8 8.6 37 9-45 36-72 (405)
263 2bi7_A UDP-galactopyranose mut 97.6 3.2E-05 1.1E-09 88.3 4.9 41 9-51 3-43 (384)
264 1chu_A Protein (L-aspartate ox 97.6 3E-05 1E-09 92.6 4.5 38 9-49 8-45 (540)
265 3ka7_A Oxidoreductase; structu 97.6 3E-05 1E-09 90.3 4.3 40 10-51 1-40 (425)
266 2pyx_A Tryptophan halogenase; 97.6 0.00013 4.4E-09 87.2 10.0 61 98-172 172-233 (526)
267 2bs2_A Quinol-fumarate reducta 97.6 0.00036 1.2E-08 84.9 13.7 36 9-46 5-40 (660)
268 2e4g_A Tryptophan halogenase; 97.6 0.00014 4.8E-09 87.4 9.9 37 8-44 24-61 (550)
269 1sez_A Protoporphyrinogen oxid 97.5 4.9E-05 1.7E-09 90.6 5.2 42 8-51 12-53 (504)
270 2aqj_A Tryptophan halogenase, 97.5 0.00016 5.3E-09 86.8 9.2 36 9-44 5-41 (538)
271 2yg5_A Putrescine oxidase; oxi 97.5 4.1E-05 1.4E-09 89.9 4.0 41 9-51 5-45 (453)
272 4dsg_A UDP-galactopyranose mut 97.5 4.9E-05 1.7E-09 89.7 4.5 44 8-52 8-51 (484)
273 3nks_A Protoporphyrinogen oxid 97.5 5.8E-05 2E-09 89.3 5.1 40 10-51 3-44 (477)
274 1i8t_A UDP-galactopyranose mut 97.5 5.1E-05 1.7E-09 86.1 4.4 40 10-51 2-41 (367)
275 3lov_A Protoporphyrinogen oxid 97.5 5.2E-05 1.8E-09 89.6 4.4 44 9-52 4-47 (475)
276 3i6d_A Protoporphyrinogen oxid 97.5 4.6E-05 1.6E-09 90.0 3.5 43 9-51 5-51 (470)
277 2vvm_A Monoamine oxidase N; FA 97.4 6.6E-05 2.3E-09 89.2 4.7 40 10-51 40-79 (495)
278 3kkj_A Amine oxidase, flavin-c 97.4 5.8E-05 2E-09 82.0 3.2 42 739-782 2-43 (336)
279 2ivd_A PPO, PPOX, protoporphyr 97.4 8.1E-05 2.8E-09 88.0 4.7 42 8-51 15-56 (478)
280 4hb9_A Similarities with proba 97.4 9.9E-05 3.4E-09 85.3 5.1 34 10-45 2-35 (412)
281 1d5t_A Guanine nucleotide diss 97.3 0.00012 4.2E-09 85.0 4.7 44 7-52 4-47 (433)
282 2iid_A L-amino-acid oxidase; f 97.3 0.00011 3.8E-09 87.4 4.4 42 8-51 32-73 (498)
283 3p1w_A Rabgdi protein; GDI RAB 97.2 0.00017 5.8E-09 83.5 4.7 45 6-52 17-61 (475)
284 2weu_A Tryptophan 5-halogenase 97.2 0.00052 1.8E-08 81.7 9.0 61 98-172 170-230 (511)
285 2z3y_A Lysine-specific histone 97.2 0.0002 6.9E-09 87.8 4.9 42 8-51 106-147 (662)
286 2xag_A Lysine-specific histone 97.2 0.00024 8.4E-09 88.4 5.3 42 8-51 277-318 (852)
287 2oln_A NIKD protein; flavoprot 97.1 0.00025 8.6E-09 81.5 5.0 36 9-46 4-39 (397)
288 1b37_A Protein (polyamine oxid 97.1 0.00019 6.6E-09 84.5 3.9 43 8-52 3-46 (472)
289 3ihm_A Styrene monooxygenase A 97.1 0.00022 7.7E-09 82.8 4.2 34 9-44 22-55 (430)
290 1rp0_A ARA6, thiazole biosynth 97.1 0.00028 9.5E-09 76.9 4.4 34 870-903 40-74 (284)
291 1c0p_A D-amino acid oxidase; a 96.9 0.00066 2.3E-08 76.9 5.7 35 8-44 5-39 (363)
292 3pl8_A Pyranose 2-oxidase; sub 96.9 0.00056 1.9E-08 82.9 4.8 40 9-50 46-85 (623)
293 3g3e_A D-amino-acid oxidase; F 96.8 0.00048 1.6E-08 77.6 3.4 35 10-44 1-39 (351)
294 4gut_A Lysine-specific histone 96.8 0.00069 2.4E-08 83.8 4.7 39 9-49 336-374 (776)
295 3ayj_A Pro-enzyme of L-phenyla 96.7 0.0006 2.1E-08 82.5 2.9 38 9-46 56-100 (721)
296 3axb_A Putative oxidoreductase 96.6 0.00083 2.9E-08 78.5 3.6 38 8-47 22-60 (448)
297 3g5s_A Methylenetetrahydrofola 96.6 0.0014 4.9E-08 72.4 5.0 36 10-47 2-37 (443)
298 4hb9_A Similarities with proba 96.5 0.0049 1.7E-07 70.8 9.2 33 870-902 2-34 (412)
299 2bry_A NEDD9 interacting prote 96.4 0.0032 1.1E-07 74.3 6.5 36 868-903 91-126 (497)
300 3alj_A 2-methyl-3-hydroxypyrid 96.4 0.0059 2E-07 69.4 8.6 35 869-903 11-45 (379)
301 2e1m_A L-glutamate oxidase; L- 96.3 0.0012 4.1E-08 74.2 2.4 40 740-781 45-85 (376)
302 4gde_A UDP-galactopyranose mut 96.3 0.0013 4.4E-08 78.4 2.7 41 739-781 10-51 (513)
303 4dgk_A Phytoene dehydrogenase; 96.3 0.0011 3.7E-08 78.8 1.8 40 740-781 2-41 (501)
304 2vou_A 2,6-dihydroxypyridine h 96.2 0.0078 2.7E-07 68.9 8.7 35 869-903 5-39 (397)
305 2rgh_A Alpha-glycerophosphate 96.2 0.003 1E-07 75.8 4.8 39 9-49 32-70 (571)
306 2x3n_A Probable FAD-dependent 96.1 0.0053 1.8E-07 70.3 6.4 34 870-903 7-40 (399)
307 3hdq_A UDP-galactopyranose mut 96.0 0.0025 8.7E-08 72.2 2.8 43 739-783 29-71 (397)
308 3k7m_X 6-hydroxy-L-nicotine ox 95.9 0.0024 8.3E-08 74.0 2.5 40 741-782 3-42 (431)
309 3nlc_A Uncharacterized protein 95.9 0.0056 1.9E-07 72.5 5.3 34 869-902 107-140 (549)
310 3oz2_A Digeranylgeranylglycero 95.9 0.0027 9.2E-08 72.5 2.6 40 737-778 2-41 (397)
311 2xdo_A TETX2 protein; tetracyc 95.9 0.017 5.9E-07 66.0 9.3 34 869-902 26-59 (398)
312 1v0j_A UDP-galactopyranose mut 95.9 0.0033 1.1E-07 72.0 3.1 44 739-784 7-51 (399)
313 3gyx_A Adenylylsulfate reducta 95.8 0.0042 1.4E-07 75.5 4.0 37 9-45 22-62 (662)
314 1yvv_A Amine oxidase, flavin-c 95.8 0.0039 1.3E-07 69.5 3.2 41 740-782 3-43 (336)
315 2bcg_G Secretory pathway GDP d 95.7 0.0038 1.3E-07 72.8 3.1 42 739-782 11-52 (453)
316 1jnr_A Adenylylsulfate reducta 95.7 0.0065 2.2E-07 74.0 4.9 36 9-45 22-60 (643)
317 3nrn_A Uncharacterized protein 95.6 0.0038 1.3E-07 72.1 2.5 40 741-782 2-41 (421)
318 2bi7_A UDP-galactopyranose mut 95.6 0.0042 1.4E-07 70.6 2.6 44 740-785 4-47 (384)
319 3qj4_A Renalase; FAD/NAD(P)-bi 95.5 0.0039 1.3E-07 69.8 2.0 40 741-782 3-45 (342)
320 3lov_A Protoporphyrinogen oxid 95.5 0.0052 1.8E-07 72.3 2.9 46 739-784 4-49 (475)
321 3ka7_A Oxidoreductase; structu 95.5 0.0046 1.6E-07 71.5 2.4 39 741-781 2-40 (425)
322 3nks_A Protoporphyrinogen oxid 95.4 0.0048 1.6E-07 72.6 2.3 41 740-782 3-45 (477)
323 3rp8_A Flavoprotein monooxygen 95.4 0.011 3.9E-07 67.7 5.4 36 868-903 22-57 (407)
324 2b9w_A Putative aminooxidase; 95.4 0.0064 2.2E-07 70.3 3.1 44 740-784 7-50 (424)
325 1vg0_A RAB proteins geranylger 95.4 0.011 3.6E-07 70.8 5.0 48 1-51 1-48 (650)
326 1rsg_A FMS1 protein; FAD bindi 95.4 0.0056 1.9E-07 72.8 2.7 43 739-782 8-50 (516)
327 2jae_A L-amino acid oxidase; o 95.3 0.0058 2E-07 72.2 2.5 40 740-781 12-51 (489)
328 1i8t_A UDP-galactopyranose mut 95.3 0.0062 2.1E-07 68.7 2.7 40 741-782 3-42 (367)
329 1s3e_A Amine oxidase [flavin-c 95.3 0.0062 2.1E-07 72.5 2.8 41 740-782 5-45 (520)
330 2yg5_A Putrescine oxidase; oxi 95.3 0.0065 2.2E-07 71.0 2.9 41 740-782 6-46 (453)
331 3t37_A Probable dehydrogenase; 95.3 0.011 3.7E-07 70.5 4.9 37 8-45 16-52 (526)
332 3ces_A MNMG, tRNA uridine 5-ca 95.2 0.017 5.9E-07 68.9 6.1 32 870-901 29-60 (651)
333 1kdg_A CDH, cellobiose dehydro 95.1 0.012 4.2E-07 70.3 4.7 36 8-45 6-41 (546)
334 3i6d_A Protoporphyrinogen oxid 95.1 0.0066 2.3E-07 71.2 2.2 42 740-781 6-51 (470)
335 2vvm_A Monoamine oxidase N; FA 95.0 0.0052 1.8E-07 72.7 1.0 40 740-781 40-79 (495)
336 1sez_A Protoporphyrinogen oxid 94.9 0.0082 2.8E-07 71.2 2.4 42 740-783 14-55 (504)
337 2zxi_A TRNA uridine 5-carboxym 94.9 0.021 7.3E-07 67.9 5.8 32 870-901 28-59 (637)
338 2ivd_A PPO, PPOX, protoporphyr 94.9 0.0091 3.1E-07 70.2 2.6 42 739-782 16-57 (478)
339 2gqf_A Hypothetical protein HI 94.8 0.01 3.5E-07 67.8 2.6 41 739-781 4-44 (401)
340 3v76_A Flavoprotein; structura 94.8 0.0096 3.3E-07 68.3 2.3 41 739-781 27-67 (417)
341 3q9t_A Choline dehydrogenase a 94.7 0.02 6.7E-07 68.4 4.8 37 8-45 5-41 (577)
342 1ju2_A HydroxynitrIle lyase; f 94.7 0.016 5.4E-07 69.0 4.0 35 8-45 25-59 (536)
343 4dsg_A UDP-galactopyranose mut 94.7 0.013 4.4E-07 68.9 3.1 43 739-782 9-51 (484)
344 3qvp_A Glucose oxidase; oxidor 94.6 0.021 7.3E-07 68.1 4.9 36 8-44 18-53 (583)
345 2gjc_A Thiazole biosynthetic e 94.6 0.014 4.7E-07 63.9 3.0 40 740-781 66-108 (326)
346 1n4w_A CHOD, cholesterol oxida 94.6 0.022 7.5E-07 67.2 4.9 37 9-47 5-41 (504)
347 3cgv_A Geranylgeranyl reductas 94.6 0.013 4.5E-07 66.8 2.8 41 738-780 3-43 (397)
348 2iid_A L-amino-acid oxidase; f 94.5 0.012 4.2E-07 69.5 2.3 40 740-781 34-73 (498)
349 1b37_A Protein (polyamine oxid 94.2 0.014 4.9E-07 68.4 2.1 45 740-786 5-50 (472)
350 1d5t_A Guanine nucleotide diss 94.2 0.018 6.2E-07 66.6 3.0 41 740-782 7-47 (433)
351 1coy_A Cholesterol oxidase; ox 94.2 0.036 1.2E-06 65.4 5.5 36 8-45 10-45 (507)
352 3dme_A Conserved exported prot 94.0 0.02 6.7E-07 64.5 2.5 36 740-777 5-40 (369)
353 3jsk_A Cypbp37 protein; octame 93.8 0.024 8.3E-07 62.3 2.7 40 739-780 79-121 (344)
354 3fim_B ARYL-alcohol oxidase; A 93.7 0.033 1.1E-06 66.3 4.0 37 9-46 2-38 (566)
355 2z3y_A Lysine-specific histone 93.7 0.022 7.6E-07 69.7 2.4 42 739-782 107-148 (662)
356 2xag_A Lysine-specific histone 93.6 0.023 8E-07 70.7 2.5 40 740-781 279-318 (852)
357 3p1w_A Rabgdi protein; GDI RAB 93.6 0.027 9.3E-07 65.1 2.8 41 739-781 20-60 (475)
358 4at0_A 3-ketosteroid-delta4-5a 93.5 0.026 8.8E-07 66.9 2.6 42 737-780 39-80 (510)
359 2jbv_A Choline oxidase; alcoho 93.3 0.058 2E-06 64.2 5.2 38 8-46 12-49 (546)
360 1y0p_A Fumarate reductase flav 93.3 0.033 1.1E-06 66.9 3.1 41 739-781 126-166 (571)
361 3dje_A Fructosyl amine: oxygen 93.1 0.036 1.2E-06 64.2 2.8 38 740-779 7-45 (438)
362 2i0z_A NAD(FAD)-utilizing dehy 92.9 0.036 1.2E-06 64.4 2.5 39 740-780 27-65 (447)
363 3nyc_A D-arginine dehydrogenas 92.9 0.036 1.2E-06 62.7 2.3 37 738-777 8-44 (381)
364 2gmh_A Electron transfer flavo 92.9 0.041 1.4E-06 66.1 3.0 39 739-779 35-79 (584)
365 3c96_A Flavin-containing monoo 92.8 0.041 1.4E-06 63.1 2.8 36 740-777 5-41 (410)
366 3c4a_A Probable tryptophan hyd 92.7 0.04 1.4E-06 62.5 2.4 34 741-776 2-37 (381)
367 1gpe_A Protein (glucose oxidas 92.6 0.08 2.7E-06 63.6 5.0 37 8-45 23-59 (587)
368 2oln_A NIKD protein; flavoprot 92.6 0.043 1.5E-06 62.6 2.5 35 740-776 5-39 (397)
369 1qo8_A Flavocytochrome C3 fuma 92.6 0.042 1.4E-06 66.0 2.5 41 739-781 121-161 (566)
370 1ryi_A Glycine oxidase; flavop 92.5 0.044 1.5E-06 62.0 2.4 38 739-778 17-54 (382)
371 2uzz_A N-methyl-L-tryptophan o 92.5 0.046 1.6E-06 61.7 2.5 36 740-777 3-38 (372)
372 3lk7_A UDP-N-acetylmuramoylala 92.3 0.099 3.4E-06 60.6 5.2 35 8-44 8-42 (451)
373 2g1u_A Hypothetical protein TM 92.3 0.12 4E-06 50.0 4.8 35 8-44 18-52 (155)
374 3nix_A Flavoprotein/dehydrogen 92.2 0.053 1.8E-06 62.3 2.7 33 740-774 6-38 (421)
375 1k0i_A P-hydroxybenzoate hydro 92.2 0.054 1.9E-06 61.6 2.6 34 740-775 3-36 (394)
376 2gf3_A MSOX, monomeric sarcosi 92.1 0.054 1.9E-06 61.4 2.5 36 740-777 4-39 (389)
377 3pvc_A TRNA 5-methylaminomethy 92.0 0.054 1.9E-06 66.6 2.6 36 740-777 265-300 (689)
378 1lss_A TRK system potassium up 92.0 0.13 4.4E-06 48.5 4.6 34 9-44 4-37 (140)
379 4gut_A Lysine-specific histone 92.0 0.052 1.8E-06 67.1 2.3 39 739-779 336-374 (776)
380 2qa1_A PGAE, polyketide oxygen 91.9 0.061 2.1E-06 63.3 2.7 38 738-777 10-47 (500)
381 1y56_B Sarcosine oxidase; dehy 91.8 0.063 2.2E-06 60.8 2.7 36 739-777 5-40 (382)
382 3ps9_A TRNA 5-methylaminomethy 91.7 0.055 1.9E-06 66.5 2.2 36 740-777 273-308 (676)
383 3atr_A Conserved archaeal prot 91.7 0.054 1.8E-06 63.0 1.9 36 739-776 6-41 (453)
384 3fwz_A Inner membrane protein 91.7 0.17 6E-06 47.8 5.2 34 9-44 7-40 (140)
385 3ihm_A Styrene monooxygenase A 91.6 0.049 1.7E-06 62.8 1.4 34 739-774 22-55 (430)
386 2qa2_A CABE, polyketide oxygen 91.6 0.063 2.2E-06 63.2 2.4 37 739-777 12-48 (499)
387 2r0c_A REBC; flavin adenine di 91.6 0.069 2.3E-06 63.8 2.7 36 740-777 27-62 (549)
388 3ic5_A Putative saccharopine d 91.3 0.16 5.6E-06 46.0 4.5 34 9-44 5-39 (118)
389 2g1u_A Hypothetical protein TM 91.2 0.19 6.5E-06 48.5 5.0 40 862-901 12-51 (155)
390 3pl8_A Pyranose 2-oxidase; sub 91.1 0.077 2.6E-06 64.1 2.5 40 739-780 46-85 (623)
391 3e1t_A Halogenase; flavoprotei 91.1 0.083 2.8E-06 62.5 2.7 33 740-774 8-40 (512)
392 3g3e_A D-amino-acid oxidase; F 91.1 0.063 2.2E-06 60.0 1.6 35 741-775 2-40 (351)
393 3ihg_A RDME; flavoenzyme, anth 91.0 0.074 2.5E-06 63.4 2.2 36 740-777 6-41 (535)
394 3da1_A Glycerol-3-phosphate de 91.0 0.078 2.7E-06 63.3 2.4 40 740-781 19-58 (561)
395 2qcu_A Aerobic glycerol-3-phos 91.0 0.093 3.2E-06 61.8 3.0 39 739-779 3-41 (501)
396 3dfz_A SIRC, precorrin-2 dehyd 91.0 0.16 5.4E-06 52.1 4.3 35 866-900 28-62 (223)
397 1id1_A Putative potassium chan 90.9 0.2 6.7E-06 48.2 4.8 33 9-43 3-35 (153)
398 3c4n_A Uncharacterized protein 90.8 0.089 3E-06 60.1 2.5 34 740-775 37-72 (405)
399 3fmw_A Oxygenase; mithramycin, 90.8 0.093 3.2E-06 62.7 2.8 37 739-777 49-85 (570)
400 3i3l_A Alkylhalidase CMLS; fla 90.7 0.09 3.1E-06 63.1 2.6 36 738-775 22-57 (591)
401 1c0p_A D-amino acid oxidase; a 90.5 0.096 3.3E-06 58.8 2.4 34 739-774 6-39 (363)
402 1kyq_A Met8P, siroheme biosynt 90.4 0.19 6.7E-06 53.1 4.5 35 866-900 10-44 (274)
403 3llv_A Exopolyphosphatase-rela 90.3 0.21 7.1E-06 47.2 4.3 33 10-44 7-39 (141)
404 2e5v_A L-aspartate oxidase; ar 90.2 0.11 3.8E-06 60.6 2.7 36 741-779 1-36 (472)
405 4dio_A NAD(P) transhydrogenase 90.2 0.23 7.9E-06 55.5 5.1 35 8-44 189-223 (405)
406 1d4d_A Flavocytochrome C fumar 90.1 0.11 3.9E-06 62.1 2.7 40 740-781 127-166 (572)
407 2wdq_A Succinate dehydrogenase 90.0 0.096 3.3E-06 62.9 2.0 37 739-777 7-43 (588)
408 2x5o_A UDP-N-acetylmuramoylala 89.6 0.17 5.9E-06 58.3 3.6 34 9-44 5-38 (439)
409 1chu_A Protein (L-aspartate ox 89.5 0.12 4.1E-06 61.4 2.2 37 739-778 8-44 (540)
410 3cp8_A TRNA uridine 5-carboxym 89.3 0.12 4.1E-06 61.7 2.1 40 739-780 21-61 (641)
411 2h88_A Succinate dehydrogenase 89.3 0.13 4.4E-06 62.0 2.3 40 737-778 16-55 (621)
412 2rgh_A Alpha-glycerophosphate 89.3 0.15 5.2E-06 61.0 2.9 40 739-780 32-71 (571)
413 4e12_A Diketoreductase; oxidor 89.3 0.32 1.1E-05 52.3 5.2 34 9-44 4-37 (283)
414 2dkh_A 3-hydroxybenzoate hydro 89.3 0.12 4.3E-06 62.7 2.2 36 740-777 33-69 (639)
415 3g5s_A Methylenetetrahydrofola 89.0 0.18 6.1E-06 55.9 2.9 36 740-777 2-37 (443)
416 3axb_A Putative oxidoreductase 89.0 0.13 4.4E-06 59.7 2.0 39 738-777 22-60 (448)
417 1kf6_A Fumarate reductase flav 88.8 0.15 5.3E-06 61.2 2.5 38 740-777 6-43 (602)
418 2weu_A Tryptophan 5-halogenase 88.8 0.11 3.8E-06 61.5 1.2 33 740-774 3-38 (511)
419 3dfz_A SIRC, precorrin-2 dehyd 88.8 0.26 8.9E-06 50.4 3.8 35 528-562 28-62 (223)
420 2bs2_A Quinol-fumarate reducta 88.5 0.15 5.1E-06 61.9 2.1 36 739-776 5-40 (660)
421 3p2y_A Alanine dehydrogenase/p 88.5 0.27 9.2E-06 54.5 4.0 35 8-44 183-217 (381)
422 2e4g_A Tryptophan halogenase; 88.1 0.17 5.7E-06 60.4 2.2 34 739-774 25-61 (550)
423 1kyq_A Met8P, siroheme biosynt 88.1 0.37 1.3E-05 51.0 4.5 37 527-563 9-45 (274)
424 2o3j_A UDP-glucose 6-dehydroge 87.9 0.36 1.2E-05 56.1 4.8 36 9-44 9-44 (481)
425 1pn0_A Phenol 2-monooxygenase; 87.9 0.18 6.3E-06 61.4 2.4 35 740-776 9-48 (665)
426 2aqj_A Tryptophan halogenase, 87.7 0.18 6.2E-06 59.9 2.1 34 739-774 5-41 (538)
427 3c85_A Putative glutathione-re 87.6 0.33 1.1E-05 48.2 3.7 34 9-44 39-73 (183)
428 2hmt_A YUAA protein; RCK, KTN, 87.6 0.35 1.2E-05 45.6 3.7 33 10-44 7-39 (144)
429 3ayj_A Pro-enzyme of L-phenyla 87.3 0.16 5.5E-06 61.5 1.3 36 741-776 58-100 (721)
430 1pj5_A N,N-dimethylglycine oxi 87.3 0.25 8.5E-06 62.2 3.1 41 739-781 4-48 (830)
431 3l4b_C TRKA K+ channel protien 87.0 0.36 1.2E-05 49.6 3.7 33 10-44 1-33 (218)
432 1bg6_A N-(1-D-carboxylethyl)-L 86.9 0.45 1.6E-05 53.1 4.7 34 9-44 4-37 (359)
433 2a9f_A Putative malic enzyme ( 86.7 0.42 1.4E-05 52.7 4.1 34 8-43 187-221 (398)
434 2ewd_A Lactate dehydrogenase,; 86.6 0.49 1.7E-05 51.8 4.7 34 9-44 4-38 (317)
435 2pyx_A Tryptophan halogenase; 86.6 0.18 6.2E-06 59.8 1.2 34 739-774 7-52 (526)
436 1guz_A Malate dehydrogenase; o 86.3 0.6 2.1E-05 50.8 5.2 35 10-44 1-35 (310)
437 3oj0_A Glutr, glutamyl-tRNA re 86.3 0.37 1.3E-05 45.7 3.1 34 9-44 21-54 (144)
438 1x13_A NAD(P) transhydrogenase 86.2 0.52 1.8E-05 53.3 4.7 34 9-44 172-205 (401)
439 1t2d_A LDH-P, L-lactate dehydr 85.7 0.69 2.3E-05 50.6 5.2 34 9-44 4-38 (322)
440 3gyx_A Adenylylsulfate reducta 85.7 0.33 1.1E-05 58.9 2.8 37 739-777 22-64 (662)
441 1vl6_A Malate oxidoreductase; 85.5 0.53 1.8E-05 51.9 4.1 34 8-43 191-225 (388)
442 1l7d_A Nicotinamide nucleotide 85.4 0.67 2.3E-05 52.2 5.1 35 8-44 171-205 (384)
443 3qha_A Putative oxidoreductase 85.2 0.6 2.1E-05 50.5 4.5 34 9-44 15-48 (296)
444 1pzg_A LDH, lactate dehydrogen 85.2 0.69 2.4E-05 50.8 5.0 34 9-44 9-43 (331)
445 3doj_A AT3G25530, dehydrogenas 85.2 0.7 2.4E-05 50.3 5.0 35 8-44 20-54 (310)
446 3i83_A 2-dehydropantoate 2-red 84.9 0.68 2.3E-05 50.7 4.7 33 10-44 3-35 (320)
447 2q3e_A UDP-glucose 6-dehydroge 84.8 0.62 2.1E-05 54.0 4.5 36 9-44 5-40 (467)
448 2raf_A Putative dinucleotide-b 84.7 0.83 2.8E-05 46.5 4.9 35 9-45 19-53 (209)
449 1ks9_A KPA reductase;, 2-dehyd 84.6 0.76 2.6E-05 49.4 5.0 33 10-44 1-33 (291)
450 1jnr_A Adenylylsulfate reducta 84.5 0.44 1.5E-05 57.8 3.3 36 738-775 21-60 (643)
451 3g79_A NDP-N-acetyl-D-galactos 84.4 0.64 2.2E-05 53.6 4.4 35 8-44 17-53 (478)
452 1lld_A L-lactate dehydrogenase 84.4 0.74 2.5E-05 50.4 4.8 35 8-44 6-42 (319)
453 2ew2_A 2-dehydropantoate 2-red 84.1 0.75 2.6E-05 50.1 4.7 33 10-44 4-36 (316)
454 3ghy_A Ketopantoate reductase 84.0 0.71 2.4E-05 50.9 4.4 32 10-43 4-35 (335)
455 4g65_A TRK system potassium up 83.9 0.69 2.4E-05 53.4 4.4 35 8-44 2-36 (461)
456 1f0y_A HCDH, L-3-hydroxyacyl-C 83.8 0.92 3.1E-05 49.2 5.2 33 10-44 16-48 (302)
457 3eag_A UDP-N-acetylmuramate:L- 83.7 0.82 2.8E-05 50.2 4.7 34 9-44 4-38 (326)
458 3orq_A N5-carboxyaminoimidazol 83.6 1.1 3.9E-05 50.2 6.0 42 1-44 4-45 (377)
459 3l6d_A Putative oxidoreductase 83.3 1 3.5E-05 48.9 5.3 35 8-44 8-42 (306)
460 2gag_B Heterotetrameric sarcos 83.1 0.7 2.4E-05 52.4 4.0 33 870-902 22-56 (405)
461 1pjc_A Protein (L-alanine dehy 82.9 0.94 3.2E-05 50.5 4.8 34 9-44 167-200 (361)
462 2y0c_A BCEC, UDP-glucose dehyd 82.8 0.89 3E-05 52.7 4.7 34 9-44 8-41 (478)
463 3hn2_A 2-dehydropantoate 2-red 82.7 0.77 2.6E-05 50.1 4.0 32 10-43 3-34 (312)
464 2hjr_A Malate dehydrogenase; m 82.5 1.1 3.8E-05 49.1 5.1 34 9-44 14-48 (328)
465 1id1_A Putative potassium chan 82.4 1 3.4E-05 43.1 4.2 34 868-901 2-35 (153)
466 2raf_A Putative dinucleotide-b 82.4 1.1 3.6E-05 45.7 4.6 43 859-901 9-51 (209)
467 3k96_A Glycerol-3-phosphate de 82.2 1 3.6E-05 49.9 4.9 34 9-44 29-62 (356)
468 2dpo_A L-gulonate 3-dehydrogen 82.2 0.99 3.4E-05 49.2 4.6 35 8-44 5-39 (319)
469 4e21_A 6-phosphogluconate dehy 82.2 1 3.5E-05 50.0 4.7 37 6-44 19-55 (358)
470 4dll_A 2-hydroxy-3-oxopropiona 82.1 1 3.5E-05 49.3 4.7 34 9-44 31-64 (320)
471 3d0o_A L-LDH 1, L-lactate dehy 82.0 1.1 3.6E-05 49.0 4.7 35 9-43 6-40 (317)
472 3ado_A Lambda-crystallin; L-gu 81.9 1 3.6E-05 48.7 4.6 34 9-44 6-39 (319)
473 1pjq_A CYSG, siroheme synthase 81.8 1 3.5E-05 51.9 4.7 35 866-900 9-43 (457)
474 3p7m_A Malate dehydrogenase; p 81.7 1.4 4.6E-05 48.1 5.4 36 8-44 4-39 (321)
475 3gg2_A Sugar dehydrogenase, UD 81.3 1.1 3.7E-05 51.5 4.7 33 10-44 3-35 (450)
476 3k6j_A Protein F01G10.3, confi 81.3 1.5 5.2E-05 50.0 5.8 35 8-44 53-87 (460)
477 3ic5_A Putative saccharopine d 81.0 1.3 4.4E-05 39.8 4.2 34 868-901 4-38 (118)
478 3gvi_A Malate dehydrogenase; N 80.9 1.4 4.7E-05 48.1 5.1 36 8-44 6-41 (324)
479 3llv_A Exopolyphosphatase-rela 80.7 1 3.4E-05 42.3 3.5 34 868-901 5-38 (141)
480 3tl2_A Malate dehydrogenase; c 80.7 1.4 4.9E-05 47.7 5.1 34 8-43 7-41 (315)
481 3cky_A 2-hydroxymethyl glutara 80.7 1.1 3.9E-05 48.4 4.4 34 9-44 4-37 (301)
482 2uyy_A N-PAC protein; long-cha 80.6 1.3 4.5E-05 48.3 4.9 34 9-44 30-63 (316)
483 2v6b_A L-LDH, L-lactate dehydr 80.6 1.2 4.3E-05 48.1 4.7 35 10-44 1-35 (304)
484 1vg0_A RAB proteins geranylger 80.5 0.76 2.6E-05 54.9 3.1 41 739-781 8-48 (650)
485 3dtt_A NADP oxidoreductase; st 80.5 1.3 4.6E-05 46.2 4.7 35 8-44 18-52 (245)
486 3pef_A 6-phosphogluconate dehy 80.5 1.2 4.2E-05 47.7 4.6 33 10-44 2-34 (287)
487 1lss_A TRK system potassium up 80.5 1.4 4.8E-05 41.0 4.5 33 869-901 4-36 (140)
488 3g0o_A 3-hydroxyisobutyrate de 80.4 1.3 4.4E-05 48.0 4.7 34 9-44 7-40 (303)
489 2eez_A Alanine dehydrogenase; 80.3 1.3 4.5E-05 49.5 4.8 34 9-44 166-199 (369)
490 2vhw_A Alanine dehydrogenase; 80.1 1.3 4.6E-05 49.5 4.8 35 8-44 167-201 (377)
491 3c24_A Putative oxidoreductase 80.1 1.6 5.3E-05 46.9 5.2 33 10-44 12-45 (286)
492 3q2o_A Phosphoribosylaminoimid 80.0 1.8 6.1E-05 48.8 5.9 36 7-44 12-47 (389)
493 2zqz_A L-LDH, L-lactate dehydr 79.7 1.5 5E-05 48.0 4.9 37 7-43 7-43 (326)
494 2hmt_A YUAA protein; RCK, KTN, 79.7 1 3.6E-05 42.1 3.3 35 867-901 4-38 (144)
495 1evy_A Glycerol-3-phosphate de 79.7 1.3 4.6E-05 49.4 4.7 32 11-44 17-48 (366)
496 4ffl_A PYLC; amino acid, biosy 79.6 1.5 5E-05 49.0 5.0 33 10-44 2-34 (363)
497 1z82_A Glycerol-3-phosphate de 79.4 1.4 4.9E-05 48.4 4.8 34 9-44 14-47 (335)
498 1ju2_A HydroxynitrIle lyase; f 79.1 0.76 2.6E-05 54.4 2.5 35 739-776 26-60 (536)
499 1y6j_A L-lactate dehydrogenase 78.9 1.6 5.4E-05 47.6 4.7 36 9-44 7-42 (318)
500 3qsg_A NAD-binding phosphogluc 78.8 1.2 4.1E-05 48.5 3.8 33 9-43 24-57 (312)
No 1
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=100.00 E-value=8.4e-45 Score=430.01 Aligned_cols=354 Identities=27% Similarity=0.455 Sum_probs=302.0
Q ss_pred CccccccCCchhhHHHHHHh---hCCCcc---eEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTE---AGNGFT---CTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL 814 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~---~g~~~~---v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~ 814 (1129)
+++|||+|++|+++|+.|++ .| ++ |+|||+++.+||+|.+...+||.++|+|.++.+|+.+.+|.++..+.|
T Consensus 4 ~V~IIGaG~aGl~aA~~L~~~~~~G--~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~ 81 (464)
T 2xve_A 4 RIAILGAGPSGMAQLRAFQSAQEKG--AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEF 81 (464)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHTT--CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCB
T ss_pred cEEEECccHHHHHHHHHHHhhhhcC--CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhccc
Confidence 68999999999999999999 88 88 999999999999999998899988899999999999999999999888
Q ss_pred cCCCCCCC---CCCCCCChhhh--------------------------------------------------------hh
Q psy12350 815 CGYGHKGN---ADKSYIGAKDV--------------------------------------------------------LE 835 (1129)
Q Consensus 815 ~~~~~~~~---~~~~~~~~~~v--------------------------------------------------------~~ 835 (1129)
++++++.. +...|+++.++ +.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvA 161 (464)
T 2xve_A 82 ADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCC 161 (464)
T ss_dssp TTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred CCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEEC
Confidence 88765321 00111111100 01
Q ss_pred cc--CCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhc
Q psy12350 836 NY--NHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIAT 913 (1129)
Q Consensus 836 ~~--~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~ 913 (1129)
+| +.|++|++||++.|.|.++|+++|+++..+.+|+|+|||+|.||+|+|.+|++.|++|+++.+.+..+..
T Consensus 162 tG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~------ 235 (464)
T 2xve_A 162 TGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY------ 235 (464)
T ss_dssp CCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGGGGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCC------
T ss_pred CCCCCCCccCCCCCcccCCceEEehhhhCCHhHcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCC------
Confidence 56 8999999999999999999999999988889999999999999999999999999999999875432211
Q ss_pred cccEEEEecCCccccccCCCCCeEEcCCeeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCC-ccccc
Q psy12350 914 RASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNK-NVQPL 992 (1129)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~-~~~~l 992 (1129)
.++.+|++++.|+++++++|+|.||+++++|.||+||||+++++||.+++|+.++++ ++.++
T Consensus 236 -----------------~~~~~V~~~~~V~~i~~~~V~~~dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v~~~ 298 (464)
T 2xve_A 236 -----------------KWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNL 298 (464)
T ss_dssp -----------------CCCTTEEECSCEEEECSSEEEETTSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCCSSE
T ss_pred -----------------CCCCceEEcCCeEEEeCCEEEECCCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcccccc
Confidence 123478888889999999999999999999999999999999999987678888776 55579
Q ss_pred ccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHHHHhcCC--CCCCceeccCCc
Q psy12350 993 YKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQ--NPNTFHIIGHRS 1070 (1129)
Q Consensus 993 y~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 1070 (1129)
|++++.++.|||||+|++.....++.++.||+|+|++|.|+..||+.++|+++++++.+ + ..++ ..+++|. +
T Consensus 299 ~~~~~~t~~p~i~aiGd~~~~~~~~~a~~qa~~~a~~l~G~~~lP~~~~m~~~~~~~~~-~-~~~~~~~~~~~~~----~ 372 (464)
T 2xve_A 299 YKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWRE-K-ELTLVTAEEMYTY----Q 372 (464)
T ss_dssp ETTTEESSSTTEEECSCSCCSSCHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHHH-H-HHTCCSHHHHHHH----H
T ss_pred cceEecCCCCCEEEEeCcccccchHHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH-H-hhccCCCCCcccc----H
Confidence 99999999999999999987778999999999999999999999999999999988766 3 3333 2344442 5
Q ss_pred HHHHHHHHHhcCCCCCC-cHHHHHHHHchhhhhhhcCCCCCCCceeecCCCceeeec
Q psy12350 1071 ENFLNSIISMMRDESPL-PPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQAYVRTG 1126 (1129)
Q Consensus 1071 ~~y~d~l~~~~g~~~~~-p~~~~~~~~~~~~~~~~~~~~y~~~~Yr~~~~~~~~~~~ 1126 (1129)
..|+|+|++++|++ ++ ++++.++|..+...+.+++..||+.+|+++.++.|....
T Consensus 373 ~~Y~~~l~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 428 (464)
T 2xve_A 373 GDYIQNLIDMTDYP-SFDIPATNKTFLEWKHHKKENIMTFRDHSYRSLMTGTMAPKH 428 (464)
T ss_dssp HHHHHHHHTTSSSC-CCCHHHHHHHHHHHHHHHHHCTTTGGGCCCBCTTTCCBCCCC
T ss_pred HHHHHHHHHHcCCC-CCChHHHHHHHHHHHHHHHhchhhhcccceeEecCceeeccC
Confidence 78999999999999 55 788999999999999999999999999999999988764
No 2
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=100.00 E-value=2.3e-41 Score=400.50 Aligned_cols=342 Identities=23% Similarity=0.385 Sum_probs=276.4
Q ss_pred ceEEEEcCChHHHHHHHHhhc---CCCCce---EEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTE---PGSGFT---CTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~---~~~~~~---v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
++|+|||||||||+||+.|++ .| ++ |+|||+++.+||+|.+.+..+|+++|.|..+.+|+.+++++++..++
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G--~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~ 80 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKG--AEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLE 80 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTT--CCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTC
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcC--CCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcc
Confidence 699999999999999999998 65 67 99999999999999998888888888899999999999999999999
Q ss_pred cCCCCCCCC---CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 84 LSGYHHKGH---PDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 84 ~~d~~~~~~---~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
|++||++.. +.+.++++.++.+|++++++++++..+++++++|+.|++.. ....|.+++.+...+......||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~-~~~~~~V~~~~~~~g~~~~~~~d--- 156 (464)
T 2xve_A 81 FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNE-DSQTFTVTVQDHTTDTIYSEEFD--- 156 (464)
T ss_dssp BTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEET-TTTEEEEEEEETTTTEEEEEEES---
T ss_pred cCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcC-CCCcEEEEEEEcCCCceEEEEcC---
Confidence 999987531 23568899999999999999999877799999999998632 11257776654323333557899
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+||+|||+++.|++|++||.. .+.|+ ..++..| ..+
T Consensus 157 --~VVvAtG~~s~p~~p~ipG~~--~~~g~-------------~~hs~~~---------------------------~~~ 192 (464)
T 2xve_A 157 --YVVCCTGHFSTPYVPEFEGFE--KFGGR-------------ILHAHDF---------------------------RDA 192 (464)
T ss_dssp --EEEECCCSSSSBCCCCCBTTT--TCCSE-------------EEEGGGC---------------------------CCG
T ss_pred --EEEECCCCCCCCccCCCCCcc--cCCce-------------EEehhhh---------------------------CCH
Confidence 999999999999999998732 22221 1112111 222
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCCCeEEcCCceEEcCCceEEc
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQ 320 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~~i~~~~~v~~~~~~~v~~~ 320 (1129)
..+ .+++++| ||+|+||+|+|..|++.|++|++++|++.+++..++.+|...+.|+++++++|+|+
T Consensus 193 ~~~---~~k~VvV-----------VG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~~~~~V~~~~~V~~i~~~~V~~~ 258 (464)
T 2xve_A 193 LEF---KDKTVLL-----------VGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFA 258 (464)
T ss_dssp GGG---TTSEEEE-----------ECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCCCCTTEEECSCEEEECSSEEEET
T ss_pred hHc---CCCEEEE-----------EcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCCCCCceEEcCCeEEEeCCEEEEC
Confidence 222 2444444 79999999999999999999999999988776666778888899999998899999
Q ss_pred CCCEeecCEEEEcccccccCCCCCCCCCeEeecC-cccccccccccCCCCCeEEeccccc---ccccccccceeeehhhc
Q psy12350 321 DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNK-NVQPLYKHLINIEHPSMCIIGYTYR---YPFLHESCGIKVVNKNV 396 (1129)
Q Consensus 321 dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~-~~~~l~~~~~~~~~p~l~~~G~~~~---~~~~~~~~~~~~~a~~~ 396 (1129)
||+++++|.||+||||+++++||+++.++.++++ .+.++|++++.+++|+|||+|++.. ++.++ .||+++|+++
T Consensus 259 dG~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v~~~~~~~~~t~~p~i~aiGd~~~~~~~~~a~--~qa~~~a~~l 336 (464)
T 2xve_A 259 DGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFD--AQAWYARDVI 336 (464)
T ss_dssp TSCEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCCSSEETTTEESSSTTEEECSCSCCSSCHHHHH--HHHHHHHHHH
T ss_pred CCCEEeCCEEEECCCCCCCCCCcCcccccccCCCcccccccceEecCCCCCEEEEeCcccccchHHHH--HHHHHHHHHH
Confidence 9999999999999999999999996677777766 4468999999999999999999853 24444 8876666665
Q ss_pred ccccccccccccccceecCCCcccchhhhhccccc
Q psy12350 397 QPLYKHLINIEHPSMCIIGIPVESCGIKVVNKNVQ 431 (1129)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 431 (1129)
. |+++| |++++|..|+.++..
T Consensus 337 ~----G~~~l----------P~~~~m~~~~~~~~~ 357 (464)
T 2xve_A 337 M----GRLPL----------PSKEEMKADSMAWRE 357 (464)
T ss_dssp T----TSSCC----------CCHHHHHHHHHHHHH
T ss_pred c----CCCCC----------cCHHHHHHHHHHHHH
Confidence 5 66666 999999999988765
No 3
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=100.00 E-value=3.9e-38 Score=372.79 Aligned_cols=340 Identities=20% Similarity=0.343 Sum_probs=258.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCC-------------------CccCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGL-------------------PVHSS 68 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~-------------------~~~~~ 68 (1129)
..++|+|||||||||+||+.|++.|...+|+||||++.+||+|.+....... ... ...+.
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~-~~ip~~~~~~~~~~~~~g~~~~~~~~~ 83 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNK-LPVPSTNPILTTEPIVGPAALPVYPSP 83 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSC-CCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcc-cccccccccccccccccccccCCccCc
Confidence 3589999999999999999999954222999999999999999986432210 000 11367
Q ss_pred ccccccccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc
Q psy12350 69 MYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR 148 (1129)
Q Consensus 69 ~y~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 148 (1129)
+|+.+++++++..+.|+++|++.. ...|+++.++.+|+++++++++. .++++++|++|++. .+.|.+++.+...
T Consensus 84 ~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~--~i~~~t~V~~v~~~---~~~~~V~~~~~~~ 157 (447)
T 2gv8_A 84 LYRDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLLP--FIKLATDVLDIEKK---DGSWVVTYKGTKA 157 (447)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGGG--GEECSEEEEEEEEE---TTEEEEEEEESST
T ss_pred hhhhhccCCCHHHhccCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhhC--eEEeCCEEEEEEeC---CCeEEEEEeecCC
Confidence 899999999999999999998764 45788999999999999998854 79999999999763 2447776654222
Q ss_pred Cc-cceEEecceeeeEEEEecccCCCCCccccccchhh--hcccccccCCCCCcccccccccchhhhcccccccCCCCCC
Q psy12350 149 DT-VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQ--DVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVP 225 (1129)
Q Consensus 149 ~~-~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 225 (1129)
+. .....|| +||+|||+++.|++|++||.... .++|. ..++..
T Consensus 158 G~~~~~~~~d-----~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~-------------v~~~~~---------------- 203 (447)
T 2gv8_A 158 GSPISKDIFD-----AVSICNGHYEVPYIPNIKGLDEYAKAVPGS-------------VLHSSL---------------- 203 (447)
T ss_dssp TCCEEEEEES-----EEEECCCSSSSBCBCCCBTHHHHHHHSTTS-------------EEEGGG----------------
T ss_pred CCeeEEEEeC-----EEEECCCCCCCCCCCCCCChhhhhccCCcc-------------EEEecc----------------
Confidence 32 2357799 99999999999999999884321 11121 011111
Q ss_pred ccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccE-EEEccccCCcccccCCCCeE
Q psy12350 226 PVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATT-VFLSHHSEHVKKLRFPNNVV 304 (1129)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~-V~lv~r~~~~~~~~~~~~i~ 304 (1129)
+..++.+ .+++++| ||+|+||+|+|..|++.+++ |++++|++.++ ...+|.
T Consensus 204 -----------~~~~~~~---~~k~VvV-----------vG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~l---~~~~i~ 255 (447)
T 2gv8_A 204 -----------FREPELF---VGESVLV-----------VGGASSANDLVRHLTPVAKHPIYQSLLGGGDI---QNESLQ 255 (447)
T ss_dssp -----------CCCGGGG---TTCCEEE-----------ECSSHHHHHHHHHHTTTSCSSEEEECTTCCSC---BCSSEE
T ss_pred -----------cCChhhc---CCCEEEE-----------EccCcCHHHHHHHHHHHhCCcEEEEeCCCCcC---CCCCeE
Confidence 1223332 2455555 79999999999999999999 99999987662 234677
Q ss_pred EcCCceEEc--CCceEEcCCCE-eecCEEEEcccccccCCC-----CCC-CCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 305 KKPDIAELT--PTGVRFQDGSY-EQVDIILYCTGYTYRYPF-----LHE-SCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 305 ~~~~v~~~~--~~~v~~~dg~~-~~~D~VI~atG~~~~~~~-----l~~-~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
..+.|++++ +++|+|+||++ +++|.||+||||++++|| |+. ..++.++++...++|+++|++++|+|+|+|
T Consensus 256 ~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G 335 (447)
T 2gv8_A 256 QVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVG 335 (447)
T ss_dssp EECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCCCHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESS
T ss_pred EecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCCCCcccccccccCceecCCCcccccccccccCCCCcEEEEe
Confidence 889999994 45699999987 699999999999999999 875 234566666667899999999999999999
Q ss_pred cccc---ccccccccceeeehhhcccccccccccccccceecCCCcccchhhhhcccccc
Q psy12350 376 YTYR---YPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPVESCGIKVVNKNVQP 432 (1129)
Q Consensus 376 ~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 432 (1129)
++.. +|.++ .||+++|+++. |+++| |++++|++++.++++.
T Consensus 336 ~~~~~~~~~~a~--~qa~~~a~~~~----g~~~l----------p~~~~m~~~~~~~~~~ 379 (447)
T 2gv8_A 336 LALHVVPFPTSQ--AQAAFLARVWS----GRLKL----------PSKEEQLKWQDELMFS 379 (447)
T ss_dssp CCBSSCHHHHHH--HHHHHHHHHHT----TSSCC----------CCHHHHHHHHHHHHHH
T ss_pred ccccccCchHHH--HHHHHHHHHHc----CCCCC----------cCHHHHHHHHHHHHHH
Confidence 8863 34455 88877777665 56666 9999999999877653
No 4
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=100.00 E-value=3.4e-35 Score=347.62 Aligned_cols=313 Identities=25% Similarity=0.455 Sum_probs=246.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCc--ceEEEcccCCcCcccccCCCCCCCCCCCCc-------------------cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGF--TCTTFEQADNIGGTWLYTEHIGCDQYGLPV-------------------HS 797 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~--~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~-------------------~~ 797 (1129)
.-+++|||+|++|+++|+.|++.| . +|+|||+++.+||+|.+...+...+ ++|. .+
T Consensus 6 ~~dV~IIGaG~aGl~aA~~L~~~G--~~~~V~v~E~~~~~GG~~~~~~~~~~~~-~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 6 IRKIAIIGAGPSGLVTAKALLAEK--AFDQVTLFERRGSPGGVWNYTSTLSNKL-PVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTT--CCSEEEEECSSSSSSTTCSCCSCCCSCC-CSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCEEEEECccHHHHHHHHHHHhcC--CCCCeEEEecCCCCCCeecCCCCCCccc-ccccccccccccccccccccCCccC
Confidence 347899999999999999999999 7 9999999999999999764322110 1211 25
Q ss_pred cccCccccccccccccccCCCCCCCCCCCCCChhhhh-------------------------------------------
Q psy12350 798 SMYKSLKTNLPKDLMELCGYGHKGNADKSYIGAKDVL------------------------------------------- 834 (1129)
Q Consensus 798 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~------------------------------------------- 834 (1129)
.+|..+.++.++..+.|++++++.. ...|+.+.++.
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~ 161 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQ-TLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPI 161 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTT-CCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCE
T ss_pred chhhhhccCCCHHHhccCCCCCCCC-CCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCee
Confidence 6788888888888888887776543 22222221111
Q ss_pred ----------hccC--CCCCCCCCCCCCC----CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCE-EEE
Q psy12350 835 ----------ENYN--HPIYPEFKGKDMC----QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQ-AVV 897 (1129)
Q Consensus 835 ----------~~~~--~P~~P~i~G~~~f----~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~-V~v 897 (1129)
.+|. .|++|++||+++| .|.++|+++|+++..+.+|+|+|||+|.||+|+|.+|++.+++ |++
T Consensus 162 ~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~V~l 241 (447)
T 2gv8_A 162 SKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQ 241 (447)
T ss_dssp EEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGGGGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEE
T ss_pred EEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChhhcCCCEEEEEccCcCHHHHHHHHHHHhCCcEEE
Confidence 1444 8999999998764 6889999999998888999999999999999999999999999 999
Q ss_pred EecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCCeeEEe--CCcEEecCCcE-eeccEEEEccCccCcCC
Q psy12350 898 VGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELT--PTGVRFQDGSY-EQVDIILCCTGYSNHYP 974 (1129)
Q Consensus 898 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~--~~~V~~~dG~~-~~~D~VI~aTG~~~~~~ 974 (1129)
+.+++.. +. ..+|.+.+.|+++. +++|+|.||++ +++|.||+||||+++++
T Consensus 242 ~~r~~~~---------------l~-----------~~~i~~~~~v~~~~~~~~~v~~~dG~~~~~~D~vi~atG~~~~~~ 295 (447)
T 2gv8_A 242 SLLGGGD---------------IQ-----------NESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVP 295 (447)
T ss_dssp ECTTCCS---------------CB-----------CSSEEEECCEEEEETTTTEEEETTTEEECCCSEEEECCCBCCCCC
T ss_pred EeCCCCc---------------CC-----------CCCeEEecCeEEEecCCCEEEECCCCEeccCCEEEECCCCCcCCC
Confidence 9885422 11 22677777799994 45799999987 69999999999999999
Q ss_pred C-----CCC-CCCeeecCCcccccccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q psy12350 975 F-----LHE-SCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQ 1048 (1129)
Q Consensus 975 f-----l~~-~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~ 1048 (1129)
| |+. ..++..++....++|+++|.+++|+|||+|++.....++.++.||+|+|++|.|+.+||+.++|++++++
T Consensus 296 ~l~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~~~~~~a~~qa~~~a~~~~g~~~lp~~~~m~~~~~~ 375 (447)
T 2gv8_A 296 FPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEEQLKWQDE 375 (447)
T ss_dssp CHHHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSSCHHHHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHH
T ss_pred CCcccccccccCceecCCCcccccccccccCCCCcEEEEeccccccCchHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 9 875 2245555555567899999999999999999987778999999999999999999999999999998887
Q ss_pred HHHHHHhcCCCCCCceecc-CCcHHHHHHHHHhcCCC
Q psy12350 1049 EVLAHLNEGQNPNTFHIIG-HRSENFLNSIISMMRDE 1084 (1129)
Q Consensus 1049 ~~~~~~~~~~~~~~~~~~~-~~~~~y~d~l~~~~g~~ 1084 (1129)
+.+.+ .+ ..+.+|.+. .++..|+|+|++.++..
T Consensus 376 ~~~~~--~~-~~~~~~~~~~~~~~~y~~~l~~~~~~~ 409 (447)
T 2gv8_A 376 LMFSL--SG-ANNMYHSLDYPKDATYINKLHDWCKQA 409 (447)
T ss_dssp HHHHH--TT-CGGGTTBCTTTHHHHHHHHHHHHHHTC
T ss_pred HHHHh--cC-CCcceeecCCccHHHHHHHHHHHhCcc
Confidence 76542 12 223446664 56789999999988764
No 5
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.97 E-value=2.2e-31 Score=319.09 Aligned_cols=352 Identities=18% Similarity=0.232 Sum_probs=242.5
Q ss_pred cCccccccCCchhhHHHHHH-hhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccc-------cccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLT-EAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKT-------NLPK-- 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~-~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~-------~~~~-- 809 (1129)
-+++|||+|++|+++|..|+ +.| .+|+|+|+++.+||+|..+.||||.+ ++ .+..|..... ..+.
T Consensus 9 ~dVvIIGaG~aGl~aA~~L~~~~G--~~v~viE~~~~~GGtw~~~~ypg~~~-d~--~s~~~~~~~~~~~~~~~~~~~~~ 83 (540)
T 3gwf_A 9 VDAVVIGAGFGGIYAVHKLHHELG--LTTVGFDKADGPGGTWYWNRYPGALS-DT--ESHLYRFSFDRDLLQESTWKTTY 83 (540)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTC--CCEEEEESSSSSCTHHHHCCCTTCEE-EE--EGGGSSCCSCHHHHHHCCCSBSE
T ss_pred CCEEEECcCHHHHHHHHHHHHcCC--CCEEEEECCCCCCCcccccCCCCcee-cC--CcceeeeccccccccCCCCcccC
Confidence 47899999999999999999 888 89999999999999999999999854 22 2223322110 0000
Q ss_pred ----c--------ccccc---CCC---------CCCC---C------CCCCCChhhhhhcc--CCCCCCCCCCCCCCCCc
Q psy12350 810 ----D--------LMELC---GYG---------HKGN---A------DKSYIGAKDVLENY--NHPIYPEFKGKDMCQIP 854 (1129)
Q Consensus 810 ----~--------~~~~~---~~~---------~~~~---~------~~~~~~~~~v~~~~--~~P~~P~i~G~~~f~g~ 854 (1129)
+ ...+. ... +..+ | ...+.....|..+| +.|++|++||+++|+|.
T Consensus 84 ~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~ 163 (540)
T 3gwf_A 84 ITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEGE 163 (540)
T ss_dssp EEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCSE
T ss_pred CCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCCC
Confidence 0 00000 000 0000 0 00011111122266 79999999999999999
Q ss_pred EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCC-ccc-----hhh----h-------------
Q psy12350 855 ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSG-LDI-----TLD----I------------- 911 (1129)
Q Consensus 855 ~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~-~~~-----~~~----~------------- 911 (1129)
.+|+..+.+..++.+|+|+|||+|.||+|+|.+|++.+++||++++.+.. ++. ... +
T Consensus 164 ~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~~~~ 243 (540)
T 3gwf_A 164 TIHTAAWPEGKSLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWERAKN 243 (540)
T ss_dssp EEEGGGCCSSCCCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHHHHT
T ss_pred EEEeecCCCccccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHHHHh
Confidence 99999999888899999999999999999999999999999999887652 110 000 0
Q ss_pred --------------------------------------------------------------------------------
Q psy12350 912 -------------------------------------------------------------------------------- 911 (1129)
Q Consensus 912 -------------------------------------------------------------------------------- 911 (1129)
T Consensus 244 ~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l~P~ 323 (540)
T 3gwf_A 244 SAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKLMPK 323 (540)
T ss_dssp SSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHHCCC
T ss_pred ccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCC
Confidence
Q ss_pred hccccEEEEecCCccccccCCCCCeEEc---CC-eeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCC-----CCCe
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLK---PD-VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE-----SCGI 982 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~-i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~-----~~g~ 982 (1129)
...|++..++..+.+.++ .++|+++ .. |+++++++|+++||+++++|+||+||||+++..++.. ..|+
T Consensus 324 ~~g~kR~~~~~~y~~~l~---~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~~~i~g~~G~ 400 (540)
T 3gwf_A 324 GLFAKRPLCDSGYYEVYN---RPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRRIEIRGRDGL 400 (540)
T ss_dssp SCCCSSCEEESSTGGGGG---STTEEEEETTTSCEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHTSEEECGGGC
T ss_pred CCCccccCCCccHHHHhc---CCCEEEEeCCCCCccEEecCeEEcCCCCEEECCEEEECCccCccccCcCcceEECCCCc
Confidence 112344444444433333 4589998 44 9999999999999999999999999999998644432 2345
Q ss_pred eecCCcc--cccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHHHH
Q psy12350 983 KVVNKNV--QPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQ-----GHITLPSKEEMLADTKQEVLAH 1053 (1129)
Q Consensus 983 ~~~~~~~--~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~-----g~~~lp~~~~~~~~~~~~~~~~ 1053 (1129)
.+++.|. ...|+++..+++||+|++.+|++ .+.+..+|.|++|++++|. |...+.++++++++|.++.+.+
T Consensus 401 ~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e~q~~~i~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 480 (540)
T 3gwf_A 401 HINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIETQVEWISDTIGYAERNGVRAIEPTPEAEAEWTETCTEI 480 (540)
T ss_dssp BHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHH
T ss_pred CHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHHHH
Confidence 5555442 35899999999999999977763 4678999999999999886 5556778888999999999887
Q ss_pred HhcCCCCCCceeccCCcHHHHHHHHHhcC---CCCCCcHHHHHHHHchhhhhhhcCCC
Q psy12350 1054 LNEGQNPNTFHIIGHRSENFLNSIISMMR---DESPLPPVLLKVYFDSYGQLTEDFIG 1108 (1129)
Q Consensus 1054 ~~~~~~~~~~~~~~~~~~~y~d~l~~~~g---~~~~~p~~~~~~~~~~~~~~~~~~~~ 1108 (1129)
.+++. + . .|.+|+..- ..-| ....||+....++...+.+++++|..
T Consensus 481 ~~~t~----~---~-~~~swy~~~-~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~g 529 (540)
T 3gwf_A 481 ANATL----F---T-KGDSWIFGA-NIPGKKPSVLFYLGGLRNYRAVMAEVAADGYRG 529 (540)
T ss_dssp HTTSC----C-----------------------CCCBCSCHHHHHHHHHHHHHTTSTT
T ss_pred HhCCC----c---c-CCCcceeCC-CCCCCCceEeeCCCCHHHHHHHHhccchhcCCC
Confidence 76532 1 1 255655431 1112 22258888888888777777777653
No 6
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.97 E-value=2.9e-31 Score=318.71 Aligned_cols=351 Identities=19% Similarity=0.201 Sum_probs=247.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccc-------ccc----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKT-------NLP---- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~-------~~~---- 808 (1129)
-+++|||+|++|+.+|..|++.| .+|+|||+++.+||+|..+.||||.| ++| +..|..... ..+
T Consensus 22 ~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GGtw~~~~ypg~~~-dv~--s~~y~~~f~~~~~~~~~~~~~~~ 96 (549)
T 4ap3_A 22 YDVVVVGAGIAGLYAIHRFRSQG--LTVRAFEAASGVGGVWYWNRYPGARC-DVE--SIDYSYSFSPELEQEWNWSEKYA 96 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBC-SSC--TTTSSCCSCHHHHHHCCCSSSSC
T ss_pred CCEEEECchHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCCcee-CCC--chhcccccccccccCCCCccCCC
Confidence 47899999999999999999999 89999999999999999999999866 333 333332211 000
Q ss_pred --ccc--------cccc---CCCCC---------CC---C------CCCCCChhhhhhcc--CCCCCCCCCCCCCCCCcE
Q psy12350 809 --KDL--------MELC---GYGHK---------GN---A------DKSYIGAKDVLENY--NHPIYPEFKGKDMCQIPI 855 (1129)
Q Consensus 809 --~~~--------~~~~---~~~~~---------~~---~------~~~~~~~~~v~~~~--~~P~~P~i~G~~~f~g~~ 855 (1129)
.++ ..+. .+.+. .. | ...+.....|+.+| +.|++|++||+++|+|.+
T Consensus 97 ~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 176 (549)
T 4ap3_A 97 TQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGDI 176 (549)
T ss_dssp BHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCce
Confidence 000 0000 00000 00 0 00011111122277 899999999999999999
Q ss_pred EeeccCC-CCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCC-ccc--------------------------
Q psy12350 856 LHSRDYR-TPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSG-LDI-------------------------- 907 (1129)
Q Consensus 856 ~hs~~~~-~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~-~~~-------------------------- 907 (1129)
+|+..|. +..++.+|+|+|||+|.||+|+|.+|++.+++||++.+++.. ++.
T Consensus 177 ~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~~~~~~~r~ 256 (549)
T 4ap3_A 177 VHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYAERRRLSRE 256 (549)
T ss_dssp EEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHHHHHHHHHH
T ss_pred EEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccHHHHHHHHh
Confidence 9999999 678889999999999999999999999999999999887752 110
Q ss_pred ---------------------------------------------------------------------------hhh-h
Q psy12350 908 ---------------------------------------------------------------------------TLD-I 911 (1129)
Q Consensus 908 ---------------------------------------------------------------------------~~~-~ 911 (1129)
.|. +
T Consensus 257 ~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~l~P~~~ 336 (549)
T 4ap3_A 257 SGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVAELLTPKDH 336 (549)
T ss_dssp SSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHHHHSCSSC
T ss_pred hccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhCCCCCC
Confidence 000 2
Q ss_pred hccccEEEEecCCccccccCCCCCeEEc---CC-eeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCC-----CCCe
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLK---PD-VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE-----SCGI 982 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~-i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~-----~~g~ 982 (1129)
...+++...+..+.+.++ .++|+++ .. |+++++++|+++|| ++++|+||+||||+++..++.. ..|+
T Consensus 337 ~~~~kR~~~~~~y~~al~---~~~V~lvd~~~~~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~~~~i~g~~G~ 412 (549)
T 4ap3_A 337 AIGAKRIVLDSGYYETYN---RDNVELVDLRSTPIVGMDETGIVTTGA-HYDLDMIVLATGFDAMTGSLDKLEIVGRGGR 412 (549)
T ss_dssp CBTTBCCEEESSTGGGGG---STTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCEEESSTTGGGSEEECGGGC
T ss_pred CCCccccCCCccHHHHhc---CCCEEEEeCCCCCceEEeCCcEEeCCC-ceecCEEEECCcccccccccCceeEECCCCc
Confidence 223344444444333333 4589998 54 99999999999999 9999999999999998645542 2245
Q ss_pred eecCCcc--cccccceeecCCCCcEEEccccc----cchhHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHH
Q psy12350 983 KVVNKNV--QPLYKHTINIEHPTMFILGVPRH----TLLFNLFDLQVRLFQQLMQ-----GHITLPSKEEMLADTKQEVL 1051 (1129)
Q Consensus 983 ~~~~~~~--~~ly~~~~~~~~p~l~~iG~~~~----~~~~~~~e~qa~~~a~~l~-----g~~~lp~~~~~~~~~~~~~~ 1051 (1129)
.+++.|. ...|+++..+++||+|++.+|++ .+.+..+|.|++|++++|. |...+.++++++++|.++++
T Consensus 413 ~l~~~w~~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~~~~~~~~~~~a~~~~~~~~~ 492 (549)
T 4ap3_A 413 TLKETWAAGPRTYLGLGIDGFPNFFNLTGPGSPSVLANMVLHSELHVDWVADAIAYLDARGAAGIEGTPEAVADWVEECR 492 (549)
T ss_dssp BHHHHTTTSCCCBTTTBCTTCTTEEETTCTTSCGGGSCHHHHHHHHHHHHHHHHHHHHHTTEEEEEECHHHHHHHHHHHH
T ss_pred CHHHhhccchhhccccccCCCCcEEEEeCCCCCCcCccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHH
Confidence 5554442 36899999999999999988874 3577999999999999886 44467788899999999998
Q ss_pred HHHhcCCCCCCceeccCCcHHHHHHHHHhcC---CCCCCcHHHHHHHHchhhhhhhcCCC
Q psy12350 1052 AHLNEGQNPNTFHIIGHRSENFLNSIISMMR---DESPLPPVLLKVYFDSYGQLTEDFIG 1108 (1129)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~y~d~l~~~~g---~~~~~p~~~~~~~~~~~~~~~~~~~~ 1108 (1129)
.+.+... + . .|.+|+.. ...-| ....||+....++...+.+++++|..
T Consensus 493 ~~~~~t~---~----~-~~~swy~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 543 (549)
T 4ap3_A 493 NRAEASL---L----N-SANSWYLG-ANIPGRPRVFMPFLGGFGVYREIITEVAESGYKG 543 (549)
T ss_dssp HHHHTCT---T----S-CTTCTTBC-CC-----CCBCSCCSCHHHHHHHHHHHHHTTCTT
T ss_pred HHHhCCC---c----C-CCCccccC-CCCCCCCceEeecCCCHHHHHHHHhchhhhcCCC
Confidence 8877632 1 1 14444421 00002 22268888888777777777776643
No 7
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.96 E-value=6.2e-30 Score=306.96 Aligned_cols=351 Identities=17% Similarity=0.196 Sum_probs=237.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccc-------ccc----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKT-------NLP---- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~-------~~~---- 808 (1129)
-+++|||+|++|+.+|..|++.| .+|+|||+++.+||+|..+.|||+.| ++| +..|..... +.+
T Consensus 10 ~dVvIIGaG~aGl~aA~~L~~~g--~~v~iiE~~~~~GGtw~~~~yPg~~~-d~~--~~~y~~~f~~~~~~~~~~~~~~~ 84 (545)
T 3uox_A 10 LDAVVIGAGVTGIYQAFLINQAG--MKVLGIEAGEDVGGTWYWNRYPGCRL-DTE--SYAYGYFALKGIIPEWEWSENFA 84 (545)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBC-SSC--HHHHCHHHHTTSSTTCCCSBSSC
T ss_pred CCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCccccCCCCceee-cCc--hhhcccccCcccccCCCccccCC
Confidence 46899999999999999999998 89999999999999999999999865 232 222321100 000
Q ss_pred --ccc--------cccc---CCCCCCC------------C------CCCCCChhhhhhcc--CCCCCCCCCCCCCCCCcE
Q psy12350 809 --KDL--------MELC---GYGHKGN------------A------DKSYIGAKDVLENY--NHPIYPEFKGKDMCQIPI 855 (1129)
Q Consensus 809 --~~~--------~~~~---~~~~~~~------------~------~~~~~~~~~v~~~~--~~P~~P~i~G~~~f~g~~ 855 (1129)
.++ ..+. ...+... | ...+.....|..+| +.|++|++||++.|+|..
T Consensus 85 ~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~~ 164 (545)
T 3uox_A 85 SQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGES 164 (545)
T ss_dssp BHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCCe
Confidence 000 0000 0000000 0 00000111112277 899999999999999999
Q ss_pred EeeccCCCC-------CCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCC-ccch----------------hh-
Q psy12350 856 LHSRDYRTP-------EPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSG-LDIT----------------LD- 910 (1129)
Q Consensus 856 ~hs~~~~~~-------~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~-~~~~----------------~~- 910 (1129)
+|+..|... .++.+|+|+|||+|.||+|+|.+|++.+++||++++++.. ++.. +.
T Consensus 165 ~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~p~~ 244 (545)
T 3uox_A 165 FHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRYPTI 244 (545)
T ss_dssp EEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTHHHH
T ss_pred EEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhhHHH
Confidence 999999876 7788999999999999999999999999999999987753 2110 00
Q ss_pred --------------------------------------------------------------------------------
Q psy12350 911 -------------------------------------------------------------------------------- 910 (1129)
Q Consensus 911 -------------------------------------------------------------------------------- 910 (1129)
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~ 324 (545)
T 3uox_A 245 LEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPVVAE 324 (545)
T ss_dssp HHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHHH
T ss_pred HHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence
Q ss_pred ------hhccccEEEEecCCccccccCCCCCeEEc---CC-eeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCC--
Q psy12350 911 ------IATRASTVFLSHHSERVTSLCLPNNVVLK---PD-VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE-- 978 (1129)
Q Consensus 911 ------~~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~~-i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~-- 978 (1129)
+...|++..++..+.+ ....++|+++ .. |+++++++|+++|| ++++|+||+||||+++..++..
T Consensus 325 ~l~P~~~~~g~kR~~~~~~y~~---al~~~nV~lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~~~~~~~~ 400 (545)
T 3uox_A 325 KLIPKDHPFGAKRVPMETNYYE---TYNRDNVHLVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVTGSLDRID 400 (545)
T ss_dssp HTSCSSSCTTSSCCCEESSHHH---HTTSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSSCSCTTSE
T ss_pred hCCCCCCCCCCCccCCCccHHH---HhcCCCEEEEecCCCCceEEccCeEEeCCC-eeecCEEEECCccccccccCCCce
Confidence 0011122222221111 1224589987 34 99999999999999 9999999999999987555542
Q ss_pred ---CCCeeecCCcc--cccccceeecCCCCcEEEcccccc----chhHHHHHHHHHHHHHHc-----CCCCCCCHHHHHH
Q psy12350 979 ---SCGIKVVNKNV--QPLYKHTINIEHPTMFILGVPRHT----LLFNLFDLQVRLFQQLMQ-----GHITLPSKEEMLA 1044 (1129)
Q Consensus 979 ---~~g~~~~~~~~--~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~~a~~l~-----g~~~lp~~~~~~~ 1044 (1129)
..|..+++.|. ...|+++..+++||+|++.+|++. +....+|.|++|++++|. |...+.+++++++
T Consensus 401 i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~~~~~~~~~~~a~~ 480 (545)
T 3uox_A 401 IRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMISYMKDNGFTYSEPTQAAEN 480 (545)
T ss_dssp EECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHHHHHTCCCEEECHHHHH
T ss_pred EECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHH
Confidence 23455554442 258999999999999999998753 567999999999999986 5667888889999
Q ss_pred HHHHHHHHHHhcCCCCCCceeccCCcHHHHHH-HHHhcC----CCCCCcHHHHHHHHchhhhhhhcCC
Q psy12350 1045 DTKQEVLAHLNEGQNPNTFHIIGHRSENFLNS-IISMMR----DESPLPPVLLKVYFDSYGQLTEDFI 1107 (1129)
Q Consensus 1045 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~d~-l~~~~g----~~~~~p~~~~~~~~~~~~~~~~~~~ 1107 (1129)
+|.++++.+.+.+. + . .|.+|+.. -...-| ....||+....++...+.++.+++.
T Consensus 481 ~~~~~~~~~~~~t~----~---~-~~~swy~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 540 (545)
T 3uox_A 481 RWTEEVYADFSRTL----L---A-EANAWWVKTTTKPDGSVVRRTLVHVSGGPEYRKRCEQVAYNNYN 540 (545)
T ss_dssp HHHHHHHHHHHTST----H---H-HHCGGGEEEEECSSSCEEEEESSCCSCHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhcCC----c---C-CCCccccCCCCCCCCCccceeeccCCcHHHHHHHHhhhhhhcCC
Confidence 99999988876532 1 1 24444421 001112 1225887777777666666555543
No 8
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=99.96 E-value=1.3e-28 Score=283.14 Aligned_cols=301 Identities=21% Similarity=0.311 Sum_probs=218.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||++|+++|..|++ .+++|+|||+++.+||.|.+ .|+.+..+.+...+.+++++
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~vie~~~~~gg~~~~----------------~~~~~~~~~~~~~~~~~~~~ 64 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRR--SGLSYVILDAEASPGGAWQH----------------AWHSLHLFSPAGWSSIPGWP 64 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--SSCCEEEECCSSSSSGGGGG----------------SCTTCBCSSCGGGSCCSSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccC----------------CCCCcEecCchhhhhCCCCC
Confidence 4799999999999999999999 56999999999999999985 46666777777788888887
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
++.. ...++++.++.+|+.++++++++ .++++++|+.++... +.|. .+.+ .. ....|| +||+||
T Consensus 65 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~i~~~~---~~~~-~v~~-~~---g~~~~d-----~vV~At 128 (357)
T 4a9w_A 65 MPAS-QGPYPARAEVLAYLAQYEQKYAL--PVLRPIRVQRVSHFG---ERLR-VVAR-DG---RQWLAR-----AVISAT 128 (357)
T ss_dssp CCCC-SSSSCBHHHHHHHHHHHHHHTTC--CEECSCCEEEEEEET---TEEE-EEET-TS---CEEEEE-----EEEECC
T ss_pred CCCC-ccCCCCHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEECC---CcEE-EEEe-CC---CEEEeC-----EEEECC
Confidence 7643 45688899999999999999988 699999999987632 2232 0322 11 267789 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
|.++.|.+|++||.. .+.+. ..++..+ .....+ ..
T Consensus 129 G~~~~~~~~~~~g~~--~~~~~-------------~~~~~~~---------------------------~~~~~~---~~ 163 (357)
T 4a9w_A 129 GTWGEAYTPEYQGLE--SFAGI-------------QLHSAHY---------------------------STPAPF---AG 163 (357)
T ss_dssp CSGGGBCCCCCTTGG--GCCSE-------------EEEGGGC---------------------------CCSGGG---TT
T ss_pred CCCCCCCCCCCCCcc--ccCCc-------------EEEeccC---------------------------CChhhc---CC
Confidence 988888889887732 11111 1111110 111122 23
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccC-CcccccC----------------------------
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSE-HVKKLRF---------------------------- 299 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~-~~~~~~~---------------------------- 299 (1129)
++++| ||+|.+|+|+|..|++.+ +|++++|+. .+++...
T Consensus 164 ~~v~V-----------vG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (357)
T 4a9w_A 164 MRVAI-----------IGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGG 231 (357)
T ss_dssp SEEEE-----------ECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC--------------------
T ss_pred CEEEE-----------ECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCccccc
Confidence 44544 799999999999999998 599999873 3333211
Q ss_pred ---------------CCCeEEcCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccc-c
Q psy12350 300 ---------------PNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKH-L 363 (1129)
Q Consensus 300 ---------------~~~i~~~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~-~ 363 (1129)
.+.+...+.++++++++|.++||+++++|.||+|||++++.+|++. .++. +++..+....+ +
T Consensus 232 ~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~-~gl~-~~~G~i~vd~~~l 309 (357)
T 4a9w_A 232 FGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKG-LDLV-TPQGQVEVDGSGL 309 (357)
T ss_dssp --CBCCCHHHHHHHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGGTT-TTCB-CTTSCBCBCTTSC
T ss_pred ccCcccChhHHHHHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCcccCc-cccc-CCCCCccccCCcc
Confidence 1124455667888888899999999999999999999999999974 5566 55554455444 4
Q ss_pred ccCCCCCeEEecc--ccc---ccccccccceeeehhhccccccc
Q psy12350 364 INIEHPSMCIIGY--TYR---YPFLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 364 ~~~~~p~l~~~G~--~~~---~~~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
..++.|++|++|. ... ........||+.+|.++.+.+.|
T Consensus 310 ~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g 353 (357)
T 4a9w_A 310 RALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCAD 353 (357)
T ss_dssp BBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred cCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHh
Confidence 5578999999993 322 12233348888889888877765
No 9
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=99.96 E-value=9.7e-29 Score=296.58 Aligned_cols=294 Identities=19% Similarity=0.154 Sum_probs=201.8
Q ss_pred CcCCCChHHHHHHHHh------cccceecCCCCCcceecccCCCC-------Cc---ceEEEEEEcccCCCCCCCCCCCC
Q psy12350 446 CIIGIPGDTVVFYMFD------LQDKIRPGRGNPRPSACEADALP-------TN---LTRLTYIISSRNYSNPVYPDFKG 509 (1129)
Q Consensus 446 ~~~~~~~~e~~~y~~~------~~~~i~~~~~~~~v~~~~~~~~~-------~~---~~~~~~v~atG~~~~p~~p~~~g 509 (1129)
...++++.|+.+|+++ +..+++|+ ++|+.+++++.. .+ ...+.||+|||.++.|++|++||
T Consensus 80 ~~~~~~~~ei~~yl~~~~~~~~l~~~i~~~---~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG 156 (545)
T 3uox_A 80 SENFASQPEMLRYVNRAADAMDVRKHYRFN---TRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKG 156 (545)
T ss_dssp SBSSCBHHHHHHHHHHHHHHHTCGGGEECS---CCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTT
T ss_pred cccCCCHHHHHHHHHHHHHHcCCcCcEEEC---CEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCC
Confidence 3456889999999982 34468884 445555554321 11 23466899999989999999999
Q ss_pred CCCcCCcEEecCCCCCC-------CCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEecceeeeccccccCCC--CC
Q psy12350 510 KDVCQIPIMHSHEYRTP-------EPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNKTITKRKKFDKGR--NY 580 (1129)
Q Consensus 510 ~~~f~g~v~hs~~~~~~-------~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~--~~ 580 (1129)
+++|+|+.+|+++|++. .++++|+|+|||+|.||+|+|..|++.+++||+++|+|+|++|..+...... ..
T Consensus 157 ~~~f~g~~~h~~~~~~~~~~~~~~~~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~ 236 (545)
T 3uox_A 157 IDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDS 236 (545)
T ss_dssp GGGCCSEEEEGGGCCBCTTSCBSCCCCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHH
T ss_pred ccccCCCeEEcccccccccccccccccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHH
Confidence 99999999999999887 8899999999999999999999999999999999999999888753210000 00
Q ss_pred CCCCCcccccc----------------cccccc-----ee--------eeecc-cCCCccCCcc-------------EEE
Q psy12350 581 NHPIYPEFKGK----------------DMCQIP-----IL--------HSRDY-RTPEPFAGKQ-------------AVV 617 (1129)
Q Consensus 581 ~~p~~p~~~~~----------------~~~~~~-----~~--------~~~~~-~~~~~~~~~~-------------~~~ 617 (1129)
....+|.+... .....+ .+ ..... .....+.... ...
T Consensus 237 l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (545)
T 3uox_A 237 LRNRYPTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQR 316 (545)
T ss_dssp HHHTHHHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHH
Confidence 00000100000 000000 00 00000 0000000000 000
Q ss_pred Eccccccccccc-cccccCcEEEEecCCcchhcccCCCcEEe---cCCceEEeCCcEEEcCCcEEeccEEEEccCCCCCC
Q psy12350 618 VGSGQSGLDITL-DIATRASTVFLSHHSERVTSLCLPNNVVL---KPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHY 693 (1129)
Q Consensus 618 ~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~v---~~~I~~it~~gV~~~dG~~~~~D~VVlATGy~~~~ 693 (1129)
+........+.| ++..+|+|.+++. +|+++++.+|+.++ .++|++++++||++.|| ++++|+||+||||+...
T Consensus 317 v~d~~~~~~l~P~~~~~g~kR~~~~~--~y~~al~~~nV~lv~~~~~~I~~it~~gv~~~dG-~~~~D~IV~ATGf~~~~ 393 (545)
T 3uox_A 317 VKDPVVAEKLIPKDHPFGAKRVPMET--NYYETYNRDNVHLVDIREAPIQEVTPEGIKTADA-AYDLDVIIYATGFDAVT 393 (545)
T ss_dssp CSCHHHHHHTSCSSSCTTSSCCCEES--SHHHHTTSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCCBSSS
T ss_pred cCCHHHHHhCCCCCCCCCCCccCCCc--cHHHHhcCCCEEEEecCCCCceEEccCeEEeCCC-eeecCEEEECCcccccc
Confidence 000111123566 6888899988754 58999999999999 68999999999999999 99999999999999765
Q ss_pred cccccccCceeeecccccccceeeecCCCceE-EEeecccccceeeccCccccccCCc
Q psy12350 694 PFLHESCGIKVVNKNVQPLYKHTINIEHPTMF-ILGVSFTIEEFIKVCPNIVDRHGPG 750 (1129)
Q Consensus 694 ~~l~~~l~~~i~~~~g~~l~~~~~~~~~p~l~-~vG~~~~pn~~~~~g~~~iiG~G~~ 750 (1129)
.++. ++.+.|++|..|.+.|. +.|..| ++.+++|||+|+..||+.-.|.+..
T Consensus 394 ~~~~---~~~i~g~~G~~l~~~w~--~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~ 446 (545)
T 3uox_A 394 GSLD---RIDIRGKDNVRLIDAWA--EGPSTYLGLQARGFPNFFTLVGPHNGSTFCNV 446 (545)
T ss_dssp CSCT---TSEEECGGGCBHHHHTT--TSCCCBTTTBCTTCTTEEECSSGGGTGGGSCH
T ss_pred ccCC---CceEECCCCccHHHhhc--cccceeeccccCCCCcEEEEeCCCCCCccccH
Confidence 5443 57889999999999994 457766 7888999999999999977666554
No 10
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.95 E-value=1.1e-27 Score=289.21 Aligned_cols=350 Identities=17% Similarity=0.210 Sum_probs=232.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccc-c------cccc---
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLK-T------NLPK--- 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~-~------~~~~--- 809 (1129)
-+++|||+|++|+++|..|++.| ++++|||+++.+||+|..+.+|++.+ +..+..|.... . ..+.
T Consensus 17 ~dVvIIGaG~aGl~aA~~L~~~G--~~v~iiE~~~~~GG~w~~~~~pg~~~---d~~~~~~~~~f~~~~~~~~~~~~~~~ 91 (542)
T 1w4x_A 17 VDVLVVGAGFSGLYALYRLRELG--RSVHVIETAGDVGGVWYWNRYPGARC---DIESIEYCYSFSEEVLQEWNWTERYA 91 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTHHHHCCCTTCBC---SSCTTTSSCCSCHHHHHHCCCCBSSC
T ss_pred CCEEEECccHHHHHHHHHHHhCC--CCEEEEeCCCCCCCcccccCCCceee---cccccccccccChhhhhccCcccccC
Confidence 36899999999999999999999 99999999999999999999998754 11222222110 0 0000
Q ss_pred ---cc--------cccc---CCCCC---------CC---CC------CCCCChhhhhhcc--CCCCCCCCCCCCCCCCcE
Q psy12350 810 ---DL--------MELC---GYGHK---------GN---AD------KSYIGAKDVLENY--NHPIYPEFKGKDMCQIPI 855 (1129)
Q Consensus 810 ---~~--------~~~~---~~~~~---------~~---~~------~~~~~~~~v~~~~--~~P~~P~i~G~~~f~g~~ 855 (1129)
++ ..+. ...+. ++ |. ..+.....|..+| +.|++|++||++.|+|.+
T Consensus 92 ~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~ 171 (542)
T 1w4x_A 92 SQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNL 171 (542)
T ss_dssp BHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEE
T ss_pred CHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCce
Confidence 00 0000 00000 00 00 0000011111255 789999999999999999
Q ss_pred EeeccCC-CCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCc-cc-----h-----------h--------
Q psy12350 856 LHSRDYR-TPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGL-DI-----T-----------L-------- 909 (1129)
Q Consensus 856 ~hs~~~~-~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~-~~-----~-----------~-------- 909 (1129)
+|+..|. +..++.+|+|+|||+|.||+|+|.+|++.+++|+++.+.+... +. . |
T Consensus 172 ~hs~~~~~~~~~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~~~ 251 (542)
T 1w4x_A 172 YHTGNWPHEPVDFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREESRN 251 (542)
T ss_dssp EEGGGCCSSCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHHHT
T ss_pred EECCCCCCchhccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHHHh
Confidence 9999998 5577899999999999999999999999999999998765431 10 0 0
Q ss_pred ------------------------------------------------------------------------------hh
Q psy12350 910 ------------------------------------------------------------------------------DI 911 (1129)
Q Consensus 910 ------------------------------------------------------------------------------~~ 911 (1129)
++
T Consensus 252 ~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~ 331 (542)
T 1w4x_A 252 TPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPKGY 331 (542)
T ss_dssp SSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCCSS
T ss_pred hccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCCCC
Confidence 00
Q ss_pred hccccEEEEecCCccccccCCCCCeEEc---C-CeeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCC-----CCCe
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLK---P-DVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE-----SCGI 982 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~---~-~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~-----~~g~ 982 (1129)
...|++..++..+.+ ....++|+++ . .|+++++++|+++| +++++|+|||||||+++.+++.. ..|.
T Consensus 332 ~~~~kr~~~~~~y~~---~~~~~~v~lv~~~~~~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~~~i~g~~G~ 407 (542)
T 1w4x_A 332 PFGTKRLILEIDYYE---MFNRDNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALTGALFKIDIRGVGNV 407 (542)
T ss_dssp CSSSSCCEEESSHHH---HTTSTTEEEEETTTSCEEEECSSEEEESS-CEEECSEEEECCCCCCTTHHHHTSEEECGGGC
T ss_pred CccccCCCCCccHHH---HhCCCCEEEEecCCCCceEEcCCeEEeCC-eEEecCEEEEcCCccccccCcCceeeECCCCC
Confidence 001111222221111 1223588886 3 49999999999999 89999999999999997554432 1233
Q ss_pred eecCCcc--cccccceeecCCCCcEEE-ccccc---cchhHHHHHHHHHHHHHHc-----CCCCCCCHHHHHHHHHHHHH
Q psy12350 983 KVVNKNV--QPLYKHTINIEHPTMFIL-GVPRH---TLLFNLFDLQVRLFQQLMQ-----GHITLPSKEEMLADTKQEVL 1051 (1129)
Q Consensus 983 ~~~~~~~--~~ly~~~~~~~~p~l~~i-G~~~~---~~~~~~~e~qa~~~a~~l~-----g~~~lp~~~~~~~~~~~~~~ 1051 (1129)
.+++.|. ...|..+..+++||+|++ |.... .+..+.+|.|++|++++|. +...+.++++.+++|.++++
T Consensus 408 ~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~~~~~~~~~~~a~~~~~~~~~ 487 (542)
T 1w4x_A 408 ALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNGLTRSEAVLEKEDEWVEHVN 487 (542)
T ss_dssp BHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCCEEECHHHHHHHHHHHH
T ss_pred CHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHHHHH
Confidence 4443332 247889999999999999 55422 2456999999999999986 33466777888899999988
Q ss_pred HHHhcCCCCCCceeccCCcHHHHHHHHHh-cC---CCCCCcHHHHHHHHchhhhhhhcCCC
Q psy12350 1052 AHLNEGQNPNTFHIIGHRSENFLNSIISM-MR---DESPLPPVLLKVYFDSYGQLTEDFIG 1108 (1129)
Q Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~y~d~l~~~-~g---~~~~~p~~~~~~~~~~~~~~~~~~~~ 1108 (1129)
....... + . .|.+|+.. .. -| ....||+....++...+.+.++++.-
T Consensus 488 ~~~~~~~----~---~-~~~swy~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 538 (542)
T 1w4x_A 488 EIADETL----Y---P-MTASWYTG--ANVPGKPRVFMLYVGGFHRYRQICDEVAAKGYEG 538 (542)
T ss_dssp HHHTTSS----G---G-GCGGGSSS--CCCTTSCCCCSSCCSCHHHHHHHHHHHHHTTSTT
T ss_pred HHHhCCC----c---C-CCCcCccC--CCCCCCcceEeccCCcHHHHHHHHhccchhcCCC
Confidence 8776531 1 2 35555532 11 12 23378887777777777777666543
No 11
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=99.95 E-value=6.4e-28 Score=289.10 Aligned_cols=305 Identities=18% Similarity=0.299 Sum_probs=212.5
Q ss_pred CcceEEEEcCChHHHHHHHHhh-cCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC-
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLT-EPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS- 85 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~-~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~- 85 (1129)
..++|+|||||+|||+||..|+ + .|++|+|||+++.+||+|.....++ ...+++...+.++
T Consensus 7 ~~~dVvIIGaG~aGl~aA~~L~~~--~G~~v~viE~~~~~GGtw~~~~ypg---------------~~~d~~s~~~~~~~ 69 (540)
T 3gwf_A 7 HTVDAVVIGAGFGGIYAVHKLHHE--LGLTTVGFDKADGPGGTWYWNRYPG---------------ALSDTESHLYRFSF 69 (540)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSSCTHHHHCCCTT---------------CEEEEEGGGSSCCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEECCCCCCCcccccCCCC---------------ceecCCcceeeecc
Confidence 3579999999999999999999 8 6689999999999999998644444 3333443333333
Q ss_pred ------CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 86 ------GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 86 ------d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
.+++ ...+++..++.+|++++++++++..+++++++|++++... ....|.++.. + +....+|
T Consensus 70 ~~~~~~~~~~----~~~~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~-~~~~~~V~~~---~--G~~i~ad-- 137 (540)
T 3gwf_A 70 DRDLLQESTW----KTTYITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLD-DENLWEVTTD---H--GEVYRAK-- 137 (540)
T ss_dssp CHHHHHHCCC----SBSEEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEET-TTTEEEEEET---T--SCEEEEE--
T ss_pred ccccccCCCC----cccCCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeC-CCCEEEEEEc---C--CCEEEeC--
Confidence 1111 3357789999999999999999988999999999987532 1123444332 2 2356788
Q ss_pred eeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccc
Q psy12350 160 VRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARC 239 (1129)
Q Consensus 160 ~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 239 (1129)
+||+|||.++.|+.|++||.. .+.|. ..|+..+ ..
T Consensus 138 ---~lV~AtG~~s~p~~p~ipG~~--~f~g~-------------~~~~~~~---------------------------~~ 172 (540)
T 3gwf_A 138 ---YVVNAVGLLSAINFPNLPGLD--TFEGE-------------TIHTAAW---------------------------PE 172 (540)
T ss_dssp ---EEEECCCSCCSBCCCCCTTGG--GCCSE-------------EEEGGGC---------------------------CS
T ss_pred ---EEEECCcccccCCCCCCCCcc--ccCCC-------------EEEeecC---------------------------CC
Confidence 999999998999999998842 23221 1111111 11
Q ss_pred ccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCc-ccccC-------------------
Q psy12350 240 SEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHV-KKLRF------------------- 299 (1129)
Q Consensus 240 ~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~-~~~~~------------------- 299 (1129)
... ..+++++| ||+|.||+|+|..|++.+++||+++|++.. ++...
T Consensus 173 ~~~---~~~krV~V-----------IG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~ 238 (540)
T 3gwf_A 173 GKS---LAGRRVGV-----------IGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIW 238 (540)
T ss_dssp SCC---CTTSEEEE-----------ECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHH
T ss_pred ccc---cccceEEE-----------ECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHH
Confidence 111 12344444 799999999999999999999999998862 11000
Q ss_pred --------------------------------------------------------------------------------
Q psy12350 300 -------------------------------------------------------------------------------- 299 (1129)
Q Consensus 300 -------------------------------------------------------------------------------- 299 (1129)
T Consensus 239 ~~~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~ 318 (540)
T 3gwf_A 239 ERAKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETAR 318 (540)
T ss_dssp HHHHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence
Q ss_pred -----------------------CCCeEE----cCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCe---
Q psy12350 300 -----------------------PNNVVK----KPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGI--- 349 (1129)
Q Consensus 300 -----------------------~~~i~~----~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~--- 349 (1129)
..+|.+ ...|+++++++|+++||+++++|+||+||||+++..++.. ..+
T Consensus 319 ~l~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~gv~~~dG~~~~~DvIV~ATGf~~~~~~~~~-~~i~g~ 397 (540)
T 3gwf_A 319 KLMPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGFDAVDGNYRR-IEIRGR 397 (540)
T ss_dssp HHCCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSEEEETTCCEEECSEEEECCCBSCSSHHHHT-SEEECG
T ss_pred hCCCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCeEEcCCCCEEECCEEEECCccCccccCcCc-ceEECC
Confidence 113333 3678999999999999999999999999999988755542 212
Q ss_pred ---Eeec--CcccccccccccCCCCCeEEe-cccc---c-ccccccccceeeehhhcccccccc
Q psy12350 350 ---KVVN--KNVQPLYKHLINIEHPSMCII-GYTY---R-YPFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 350 ---~~~~--~~~~~l~~~~~~~~~p~l~~~-G~~~---~-~~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.+++ ......|+.+..++.||+|++ |-.. + .+.++ +|++++++.+.....+.
T Consensus 398 ~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~~~s~~~~~e--~q~~~i~~~i~~~~~~~ 459 (540)
T 3gwf_A 398 DGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGPFTNLPPSIE--TQVEWISDTIGYAERNG 459 (540)
T ss_dssp GGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCBCSCHHHHHH--HHHHHHHHHHHHHHHTT
T ss_pred CCcCHHHhhccChhhccccccCCCCceEEEecCCCCCccHHHHHH--HHHHHHHHHHHHHHHCC
Confidence 2211 122458899999999999998 6221 1 23344 88888888777655443
No 12
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=99.94 E-value=1.3e-27 Score=286.96 Aligned_cols=294 Identities=18% Similarity=0.185 Sum_probs=204.6
Q ss_pred CcCCCChHHHHHHHHh------cccceecCCCCCcceecccCCCC-------Cc---ceEEEEEEcccCCCCCCCCCCCC
Q psy12350 446 CIIGIPGDTVVFYMFD------LQDKIRPGRGNPRPSACEADALP-------TN---LTRLTYIISSRNYSNPVYPDFKG 509 (1129)
Q Consensus 446 ~~~~~~~~e~~~y~~~------~~~~i~~~~~~~~v~~~~~~~~~-------~~---~~~~~~v~atG~~~~p~~p~~~g 509 (1129)
...++++.|+.+|+++ +..++++++ +|+.+++++.. .+ ...+.||+|||.++.|++|++||
T Consensus 92 ~~~~~~~~ei~~yl~~~~~~~g~~~~i~~~~---~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG 168 (549)
T 4ap3_A 92 SEKYATQPEILAYLEHVADRFDLRRDIRFDT---RVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDG 168 (549)
T ss_dssp SSSSCBHHHHHHHHHHHHHHTTCGGGEECSC---CEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTT
T ss_pred ccCCCCHHHHHHHHHHHHHHcCCCccEEECC---EEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCC
Confidence 3457889999999982 334678844 45555554321 11 23466899999888999999999
Q ss_pred CCCcCCcEEecCCCC-CCCCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEecceeeeccccccCCC--CCCCCCCc
Q psy12350 510 KDVCQIPIMHSHEYR-TPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNKTITKRKKFDKGR--NYNHPIYP 586 (1129)
Q Consensus 510 ~~~f~g~v~hs~~~~-~~~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~~~~~~~~~~~~~~~~--~~~~p~~p 586 (1129)
+++|+|.++|++.|+ +..++++|+|+|||+|.||+|+|..|++.+++||+++|+++|++|..+...... ......+|
T Consensus 169 ~~~f~g~~~~~~~~~~~~~~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~ilp~~~~~~~~~~~~~l~~~~~ 248 (549)
T 4ap3_A 169 LDRFTGDIVHTARWPHDGVDFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANYSIPAGNVPLDDATRAEQKANYA 248 (549)
T ss_dssp GGGCCSEEEEGGGCCTTCCCCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECC----CHHHHHHHHHTHH
T ss_pred cccCCCceEEeccccccccccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCcCCCCCHHHHHHHHhccH
Confidence 999999999999999 688999999999999999999999999999999999999999988753210000 00000000
Q ss_pred cccccc---------------ccc-cc-----ee--------eeecccCCCccCCcc-------------EEEEcccccc
Q psy12350 587 EFKGKD---------------MCQ-IP-----IL--------HSRDYRTPEPFAGKQ-------------AVVVGSGQSG 624 (1129)
Q Consensus 587 ~~~~~~---------------~~~-~~-----~~--------~~~~~~~~~~~~~~~-------------~~~~g~~~~~ 624 (1129)
.+.... ... .+ .+ .......+..+.... ...+......
T Consensus 249 ~~~~~~r~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~ 328 (549)
T 4ap3_A 249 ERRRLSRESGGGSPHRPHPKSALEVSEEERRAVYEERWKLGGVLFSKAFPDQLTDPAANDTARAFWEEKIRAVVDDPAVA 328 (549)
T ss_dssp HHHHHHHHSSSSSSCCCCSSCTTSSCHHHHHHHHHHHHHHCHHHHTTSSTTTTTCHHHHHHHHHHHHHHHHHHCSCHHHH
T ss_pred HHHHHHHhhccccccccCccchhcCCHHHHHHHHHHHHhhcchHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 000000 000 00 00 000000000000000 0000011111
Q ss_pred cccccc-ccccCcEEEEecCCcchhcccCCCcEEe---cCCceEEeCCcEEEcCCcEEeccEEEEccCCCCCCccccccc
Q psy12350 625 LDITLD-IATRASTVFLSHHSERVTSLCLPNNVVL---KPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHESC 700 (1129)
Q Consensus 625 ~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~v---~~~I~~it~~gV~~~dG~~~~~D~VVlATGy~~~~~~l~~~l 700 (1129)
..+.++ +..+|+|+++.. +|+++++.+|+.++ .++|++++++||++.|| ++++|+||+||||+....++.
T Consensus 329 ~~l~P~~~~~~~kR~~~~~--~y~~al~~~~V~lvd~~~~~I~~it~~gv~~~dG-~~~~D~iI~ATGf~~~~~~~~--- 402 (549)
T 4ap3_A 329 ELLTPKDHAIGAKRIVLDS--GYYETYNRDNVELVDLRSTPIVGMDETGIVTTGA-HYDLDMIVLATGFDAMTGSLD--- 402 (549)
T ss_dssp HHHSCSSCCBTTBCCEEES--STGGGGGSTTEEEEETTTSCEEEEETTEEEESSC-EEECSEEEECCCEEESSTTGG---
T ss_pred HhCCCCCCCCCccccCCCc--cHHHHhcCCCEEEEeCCCCCceEEeCCcEEeCCC-ceecCEEEECCcccccccccC---
Confidence 235666 888999998854 58999999999999 88999999999999999 999999999999998754554
Q ss_pred CceeeecccccccceeeecCCCceE-EEeecccccceeeccCccccccCCc
Q psy12350 701 GIKVVNKNVQPLYKHTINIEHPTMF-ILGVSFTIEEFIKVCPNIVDRHGPG 750 (1129)
Q Consensus 701 ~~~i~~~~g~~l~~~~~~~~~p~l~-~vG~~~~pn~~~~~g~~~iiG~G~~ 750 (1129)
++.+.|++|..|.+.|. +.|..| ++.+++|||+|+..||+.-.|.++.
T Consensus 403 ~~~i~g~~G~~l~~~w~--~~~~~y~g~~~~gfPN~f~~~Gp~~~~~~~s~ 451 (549)
T 4ap3_A 403 KLEIVGRGGRTLKETWA--AGPRTYLGLGIDGFPNFFNLTGPGSPSVLANM 451 (549)
T ss_dssp GSEEECGGGCBHHHHTT--TSCCCBTTTBCTTCTTEEETTCTTSCGGGSCH
T ss_pred ceeEECCCCcCHHHhhc--cchhhccccccCCCCcEEEEeCCCCCCcCccH
Confidence 46788999999999994 457666 6888999999999999987776554
No 13
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=99.92 E-value=3.2e-25 Score=267.77 Aligned_cols=306 Identities=21% Similarity=0.338 Sum_probs=209.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC--
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS-- 85 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~-- 85 (1129)
..++|+|||||+|||+||..|++ .|++|+||||++.+||+|.....++ +....+...+.++
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~GG~w~~~~~pg---------------~~~d~~~~~~~~~f~ 77 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVWYWNRYPG---------------ARCDIESIEYCYSFS 77 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTT---------------CBCSSCTTTSSCCSC
T ss_pred CCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcccccCCCc---------------eeecccccccccccC
Confidence 35799999999999999999999 5689999999999999997533333 2222222222222
Q ss_pred -----CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 86 -----GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 86 -----d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
++++ ...+++..++.+|++.+++++++..+++++++|++++... ....|.++.. + +....+|
T Consensus 78 ~~~~~~~~~----~~~~~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~-~~~~w~V~~~---~--G~~~~ad--- 144 (542)
T 1w4x_A 78 EEVLQEWNW----TERYASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDE-ATNTWTVDTN---H--GDRIRAR--- 144 (542)
T ss_dssp HHHHHHCCC----CBSSCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEET-TTTEEEEEET---T--CCEEEEE---
T ss_pred hhhhhccCc----ccccCCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcC-CCCeEEEEEC---C--CCEEEeC---
Confidence 1222 2357889999999999999999888999999999887531 1123554432 2 2346788
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+||+|||.++.|+.|++||.. .++|. ..|+..+ ..
T Consensus 145 --~vV~AtG~~s~p~~p~i~G~~--~f~G~-------------~~hs~~~---------------------------~~- 179 (542)
T 1w4x_A 145 --YLIMASGQLSVPQLPNFPGLK--DFAGN-------------LYHTGNW---------------------------PH- 179 (542)
T ss_dssp --EEEECCCSCCCCCCCCCTTGG--GCCSE-------------EEEGGGC---------------------------CS-
T ss_pred --EEEECcCCCCCCCCCCCCCcc--cCCCc-------------eEECCCC---------------------------CC-
Confidence 999999999999999998732 23332 0122111 10
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcc-ccc---------------------
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVK-KLR--------------------- 298 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~-~~~--------------------- 298 (1129)
+.+ ...+++++| ||+|.||+|+|..|+..+.+|+++.|++... +..
T Consensus 180 ~~~-~~~gk~V~V-----------IG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~ 247 (542)
T 1w4x_A 180 EPV-DFSGQRVGV-----------IGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFRE 247 (542)
T ss_dssp SCC-CCBTCEEEE-----------ECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHH
T ss_pred chh-ccCCCEEEE-----------ECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHH
Confidence 101 122444444 7999999999999999999999999876431 100
Q ss_pred -------------------------------------------------------------------------------C
Q psy12350 299 -------------------------------------------------------------------------------F 299 (1129)
Q Consensus 299 -------------------------------------------------------------------------------~ 299 (1129)
.
T Consensus 248 ~~~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 327 (542)
T 1w4x_A 248 ESRNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLV 327 (542)
T ss_dssp HHHTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHS
T ss_pred HHHhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcC
Confidence 0
Q ss_pred C----------------------CCeEE----cCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeec
Q psy12350 300 P----------------------NNVVK----KPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN 353 (1129)
Q Consensus 300 ~----------------------~~i~~----~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~ 353 (1129)
| ++|.+ ...|+++++++|+++| +++++|+||+||||+++.+++.. ..+.-.+
T Consensus 328 P~~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~gv~~~d-~~~~~D~ii~atG~~~~~~~~~~-~~i~g~~ 405 (542)
T 1w4x_A 328 PKGYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRGVRTSE-REYELDSLVLATGFDALTGALFK-IDIRGVG 405 (542)
T ss_dssp CCSSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSEEEESS-CEEECSEEEECCCCCCTTHHHHT-SEEECGG
T ss_pred CCCCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCeEEeCC-eEEecCEEEEcCCccccccCcCc-eeeECCC
Confidence 0 12333 4578999999999999 89999999999999987666542 2222111
Q ss_pred -Cc-------ccccccccccCCCCCeEEe-cccc---c---ccccccccceeeehhhccccccccc
Q psy12350 354 -KN-------VQPLYKHLINIEHPSMCII-GYTY---R---YPFLHESCGIKVVNKNVQPLYKHLI 404 (1129)
Q Consensus 354 -~~-------~~~l~~~~~~~~~p~l~~~-G~~~---~---~~~~~~~~~~~~~a~~~~~~~~~~~ 404 (1129)
.. ....|..+..++.||+|++ |... . ++.++ +|++++|+++.....+.+
T Consensus 406 G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e--~q~~~ia~~i~~~~~~~~ 469 (542)
T 1w4x_A 406 NVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIE--QHVEWVTDHIAYMFKNGL 469 (542)
T ss_dssp GCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHH--HHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 11 1246888888999999998 7542 1 23344 899999999887766553
No 14
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=4.9e-24 Score=244.80 Aligned_cols=272 Identities=18% Similarity=0.289 Sum_probs=181.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+++.+||+|.+. ++.. ..+.+.....++.++
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~vie~~~~~gg~~~~~-~~~~---------------~~~~~~~~~~~~~~~ 64 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRRSG--LSYVILDAEASPGGAWQHA-WHSL---------------HLFSPAGWSSIPGWP 64 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHSS--CCEEEECCSSSSSGGGGGS-CTTC---------------BCSSCGGGSCCSSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCcccCC-CCCc---------------EecCchhhhhCCCCC
Confidence 347899999999999999999999 9999999999999999852 2222 111111111111111
Q ss_pred CCCCCCCC-----------------------------------------------CCChhhhhhcc--CCCCCCCCCCCC
Q psy12350 819 HKGNADKS-----------------------------------------------YIGAKDVLENY--NHPIYPEFKGKD 849 (1129)
Q Consensus 819 ~~~~~~~~-----------------------------------------------~~~~~~v~~~~--~~P~~P~i~G~~ 849 (1129)
.+.. ... +.....++.+| +.|++|++||.+
T Consensus 65 ~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~ 143 (357)
T 4a9w_A 65 MPAS-QGPYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLE 143 (357)
T ss_dssp CCCC-SSSSCBHHHHHHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGG
T ss_pred CCCC-ccCCCCHHHHHHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCcc
Confidence 1100 000 00111122266 688899999999
Q ss_pred CCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC-CCCccch---hhhhccccEEEEecCC-
Q psy12350 850 MCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG-QSGLDIT---LDIATRASTVFLSHHS- 924 (1129)
Q Consensus 850 ~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~-~~~~~~~---~~~~~~~~~~~~~~~~- 924 (1129)
.|.+..+|+..+.+...+.+|+|+|||+|.+|+|+|.+|++.+ +|+++.+. +..++.. ..+.....+.+.....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (357)
T 4a9w_A 144 SFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEG 222 (357)
T ss_dssp GCCSEEEEGGGCCCSGGGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC-----------
T ss_pred ccCCcEEEeccCCChhhcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccc
Confidence 9999999999999988889999999999999999999999998 59999876 3332221 1112222221111000
Q ss_pred ---------------ccccccC-CCCCeEEcCCeeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCc
Q psy12350 925 ---------------ERVTSLC-LPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKN 988 (1129)
Q Consensus 925 ---------------~~~~~~~-~~~~V~~~~~i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~ 988 (1129)
.+.+... ..+.+.....+.+++.++|.+.||+++++|.||+|||++|+++++.. .++. ++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~v~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~l~~-~gl~-~~~G 300 (357)
T 4a9w_A 223 REPDLPPGGFGDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHLKG-LDLV-TPQG 300 (357)
T ss_dssp -----------CBCCCHHHHHHHHTTCCCEECCCSEEETTEEECTTSCEEECSEEEECCCBCCCCGGGTT-TTCB-CTTS
T ss_pred cCCCcccccccCcccChhHHHHHhcCceEEecCcceEeCCeeEECCCCEecCCEEEECCCcCCCCcccCc-cccc-CCCC
Confidence 0000000 01234555668899999999999999999999999999999998865 6777 4444
Q ss_pred ccccccc-eeecCCCCcEEEc--cccc--cchhHHHHHHHHHHHHHHcC
Q psy12350 989 VQPLYKH-TINIEHPTMFILG--VPRH--TLLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 989 ~~~ly~~-~~~~~~p~l~~iG--~~~~--~~~~~~~e~qa~~~a~~l~g 1032 (1129)
...+..+ +..++.||||++| ++.. ......+..||+.+|+.+..
T Consensus 301 ~i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~ 349 (357)
T 4a9w_A 301 QVEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTA 349 (357)
T ss_dssp CBCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHH
T ss_pred CccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHH
Confidence 4445555 4678999999999 4443 23455677778877776653
No 15
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=99.91 E-value=1.6e-24 Score=246.80 Aligned_cols=290 Identities=12% Similarity=0.164 Sum_probs=196.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc----CCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT----DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~----~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
..+||+|||||+|||+||..|++ .|++|+|||+. ..+||.|.+.. ....
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~vie~~~~~~~~~gg~~~~~~-------------------------~~~~ 73 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLAR--AEIKPILYEGMMANGIAAGGQLTTTT-------------------------EIEN 73 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGSS-------------------------EECC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCCCCCcCcccccch-------------------------hhcc
Confidence 45899999999999999999999 56999999994 47899988411 1112
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
|+.+ +.+.+..++.+|+.++++++++ .+++++ |+.++. +.+.+.+............|| +
T Consensus 74 ~~~~-------~~~~~~~~~~~~~~~~~~~~gv--~i~~~~-v~~i~~-----~~~~~~v~~~~~~~~~~~~~d-----~ 133 (338)
T 3itj_A 74 FPGF-------PDGLTGSELMDRMREQSTKFGT--EIITET-VSKVDL-----SSKPFKLWTEFNEDAEPVTTD-----A 133 (338)
T ss_dssp STTC-------TTCEEHHHHHHHHHHHHHHTTC--EEECSC-EEEEEC-----SSSSEEEEETTCSSSCCEEEE-----E
T ss_pred cCCC-------cccCCHHHHHHHHHHHHHHcCC--EEEEeE-EEEEEE-----cCCEEEEEEEecCCCcEEEeC-----E
Confidence 2222 1245678999999999999987 788888 888875 334444443322334567899 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||+||| +.|..|++||... +.+. +.+... .....+
T Consensus 134 vvlAtG--~~~~~~~~~g~~~--~~~~-------------~~~~~~----------------------------~~~~~~ 168 (338)
T 3itj_A 134 IILATG--ASAKRMHLPGEET--YWQK-------------GISACA----------------------------VCDGAV 168 (338)
T ss_dssp EEECCC--EEECCCCCTTHHH--HBTT-------------TEESCH----------------------------HHHTTS
T ss_pred EEECcC--CCcCCCCCCCchh--ccCc-------------cEEEch----------------------------hcccch
Confidence 999999 6788888877321 1110 001000 001111
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc--------cC-CCCeEEcCCceEEcC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL--------RF-PNNVVKKPDIAELTP 314 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~--------~~-~~~i~~~~~v~~~~~ 314 (1129)
.....++++| ||+|.+|+|+|..|++.+.+|++++|.+.+... .. .-++..+..|+++++
T Consensus 169 ~~~~~~~v~v-----------vG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~ 237 (338)
T 3itj_A 169 PIFRNKPLAV-----------IGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKG 237 (338)
T ss_dssp GGGTTSEEEE-----------ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEE
T ss_pred hhcCCCEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEeecceeEEEEc
Confidence 1122344444 799999999999999999999999998876431 11 113445667888865
Q ss_pred Cc-----eEEcC-----CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc---c
Q psy12350 315 TG-----VRFQD-----GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY---P 381 (1129)
Q Consensus 315 ~~-----v~~~d-----g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~---~ 381 (1129)
++ |++++ ++++++|.||+|+|++++.+++.. ++..+++..+..-.....++.|++|.+|..... .
T Consensus 238 ~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~ 315 (338)
T 3itj_A 238 DGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG--QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQ 315 (338)
T ss_dssp SSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT--TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCC
T ss_pred ccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC--ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccc
Confidence 43 77776 456899999999999999999874 566665554432222334678999999988642 2
Q ss_pred ccccccceeeehhhccccccc
Q psy12350 382 FLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 382 ~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
......||+.+|.++...+.+
T Consensus 316 ~~~A~~~g~~aa~~i~~~l~~ 336 (338)
T 3itj_A 316 AITSAGSGCMAALDAEKYLTS 336 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred eeeehhhhHHHHHHHHHHHhc
Confidence 233347888888877765543
No 16
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=99.91 E-value=3.6e-24 Score=247.13 Aligned_cols=310 Identities=15% Similarity=0.221 Sum_probs=191.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.++|+|||||+||+++|..|++ .++ +|+|||+++ +||+|.+.+.... .+. .......+.+.++
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~--~g~~~v~lie~~~-~Gg~~~~~~~~~~----------~~~---~~~~~~~~g~~~~ 67 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKD--FGITDVIILEKGT-VGHSFKHWPKSTR----------TIT---PSFTSNGFGMPDM 67 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSS-TTHHHHTSCTTCB----------CSS---CCCCCGGGTCCCT
T ss_pred cCcEEEECcCHHHHHHHHHHHH--cCCCcEEEEecCC-CCCccccCccccc----------ccC---cchhcccCCchhh
Confidence 4799999999999999999999 557 999999988 9999985332110 000 0001111111111
Q ss_pred CCCCC-------CCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 88 HHKGH-------PDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 88 ~~~~~-------~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
..+.. ....+++..++.+|++.+++++++ .++++++|+++++.. +.|.+... . ....||
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv--~i~~~~~v~~i~~~~---~~~~v~~~---~---g~~~~d--- 133 (369)
T 3d1c_A 68 NAISMDTSPAFTFNEEHISGETYAEYLQVVANHYEL--NIFENTVVTNISADD---AYYTIATT---T---ETYHAD--- 133 (369)
T ss_dssp TCSSTTCCHHHHHCCSSCBHHHHHHHHHHHHHHTTC--EEECSCCEEEEEECS---SSEEEEES---S---CCEEEE---
T ss_pred hhccccccccccccccCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEECC---CeEEEEeC---C---CEEEeC---
Confidence 11100 012467788999999999999987 789999999887631 24444321 1 146788
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+||+|||.+..|.+| + +. ..++..+ ...
T Consensus 134 --~vVlAtG~~~~p~ip---~-------~~-------------~~~~~~~---------------------------~~~ 161 (369)
T 3d1c_A 134 --YIFVATGDYNFPKKP---F-------KY-------------GIHYSEI---------------------------EDF 161 (369)
T ss_dssp --EEEECCCSTTSBCCC---S-------SS-------------CEEGGGC---------------------------SCG
T ss_pred --EEEECCCCCCccCCC---C-------Cc-------------eechhhc---------------------------CCh
Confidence 999999966555443 2 00 0111110 111
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-cC------------------CC
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-RF------------------PN 301 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-~~------------------~~ 301 (1129)
+.+ ..++++| ||+|.+|+|+|..|++.+.+|++++|++.+... .+ ..
T Consensus 162 ~~~---~~~~vvV-----------vG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~ 227 (369)
T 3d1c_A 162 DNF---NKGQYVV-----------IGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQG 227 (369)
T ss_dssp GGS---CSSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTT
T ss_pred hhc---CCCEEEE-----------ECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhC
Confidence 111 2344444 799999999999999999999999998766521 00 01
Q ss_pred -Ce--EEcCCceEE--cCCc--eEEcCCCEee-cCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEE
Q psy12350 302 -NV--VKKPDIAEL--TPTG--VRFQDGSYEQ-VDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCI 373 (1129)
Q Consensus 302 -~i--~~~~~v~~~--~~~~--v~~~dg~~~~-~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~ 373 (1129)
+| ..+..|+++ ++++ |.+.||+++. +|.||+|||++++++++.+. .+. +++..+.+..+...++.|++|+
T Consensus 228 g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~~-~~~-~~~g~i~v~~~~~~t~~~~v~a 305 (369)
T 3d1c_A 228 ARIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQ-LFV-TTNQDIKLTTHDESTRYPNIFM 305 (369)
T ss_dssp CCEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHHH-HSC-CTTSCCCBCTTSBBSSSTTEEE
T ss_pred CcEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhhh-hcc-CCCCCEEechhhcccCCCCeEE
Confidence 14 335678888 3443 7788998774 69999999999998665421 122 3333334444445578899999
Q ss_pred ecccccc---cc---cccccceeeehhhcccccccccccccccceecCCCcccchhhhhcccc
Q psy12350 374 IGYTYRY---PF---LHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGIPVESCGIKVVNKNV 430 (1129)
Q Consensus 374 ~G~~~~~---~~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 430 (1129)
+|..... ++ ....+|++++|+++. +.+++ |+.++|.++...+.
T Consensus 306 ~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~----~~~~~----------p~~~~~~~~~~~~~ 354 (369)
T 3d1c_A 306 IGATVENDNAKLCYIYKFRARFAVLAHLLT----QREGL----------PAKQEVIENYQKNQ 354 (369)
T ss_dssp CSTTCCCSSCCCCSHHHHGGGHHHHHHHHH----HHTTC----------CCCHHHHHHHHHTT
T ss_pred eccccccCCeeEEEEehhhHHHHHHHHHHh----cccCC----------CCcchHHHHHHhcC
Confidence 9987532 11 123366666666655 55565 77777776555444
No 17
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=99.90 E-value=2.1e-24 Score=253.06 Aligned_cols=284 Identities=17% Similarity=0.211 Sum_probs=186.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
.||+||||||||++||.+|++.+.+.+|+|||+++.+++... .+|..+.....
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~------------------------~l~~~~~~~~~--- 53 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANC------------------------ALPYVIGEVVE--- 53 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGG------------------------GHHHHHTTSSC---
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcc------------------------hhHHHHcCCcc---
Confidence 379999999999999999999777789999999775432100 01110000000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
+......... +.+.++.++ .++.+++|+.++. +...+.+............|| +||||||
T Consensus 54 -~~~~~~~~~~-------~~~~~~~~i--~~~~~~~V~~id~-----~~~~~~~~~~~~~~~~~~~yd-----~lVIATG 113 (437)
T 4eqs_A 54 -DRRYALAYTP-------EKFYDRKQI--TVKTYHEVIAIND-----ERQTVSVLNRKTNEQFEESYD-----KLILSPG 113 (437)
T ss_dssp -CGGGTBCCCH-------HHHHHHHCC--EEEETEEEEEEET-----TTTEEEEEETTTTEEEEEECS-----EEEECCC
T ss_pred -chhhhhhcCH-------HHHHHhcCC--EEEeCCeEEEEEc-----cCcEEEEEeccCCceEEEEcC-----EEEECCC
Confidence 0000000111 233455666 7888999999876 445555555444555567899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|+.|++||.....+ +...... ...+.+.....+
T Consensus 114 --s~p~~p~i~g~~~~~~---------------~~~~~~~----------------------------~l~~~~~~~~~~ 148 (437)
T 4eqs_A 114 --ASANSLGFESDITFTL---------------RNLEDTD----------------------------AIDQFIKANQVD 148 (437)
T ss_dssp --EEECCCCCCCTTEECC---------------SSHHHHH----------------------------HHHHHHHHHTCC
T ss_pred --CccccccccCceEEee---------------ccHHHHH----------------------------HHHHhhhccCCc
Confidence 8888888876321110 0000000 011111111123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT 315 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~ 315 (1129)
+++| ||||++|+|+|..+++.|.+||+++|.+++++..+++ ++..+..|++++++
T Consensus 149 ~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~ 217 (437)
T 4eqs_A 149 KVLV-----------VGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGN 217 (437)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETT
T ss_pred EEEE-----------ECCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCC
Confidence 3443 7999999999999999999999999999887654432 67788899999999
Q ss_pred ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccccc------------
Q psy12350 316 GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPFL------------ 383 (1129)
Q Consensus 316 ~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~~------------ 383 (1129)
.|.+++|+++++|.||+|+|.+|+..+++ ..++..+++..+....++ -+++|++|.+|.....|..
T Consensus 218 ~v~~~~g~~~~~D~vl~a~G~~Pn~~~~~-~~gl~~~~~G~I~vd~~~-~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~ 295 (437)
T 4eqs_A 218 EITFKSGKVEHYDMIIEGVGTHPNSKFIE-SSNIKLDRKGFIPVNDKF-ETNVPNIYAIGDIATSHYRHVDLPASVPLAW 295 (437)
T ss_dssp EEEETTSCEEECSEEEECCCEEESCGGGT-TSSCCCCTTSCEECCTTC-BCSSTTEEECGGGEEEEBSSSSSEECCCSHH
T ss_pred eeeecCCeEEeeeeEEEEeceecCcHHHH-hhhhhhccCCcEecCCCc-cCCCCCEEEEEEccCcccccCCccccchhHH
Confidence 99999999999999999999999999887 456776665443332222 2688999999987533221
Q ss_pred ccccceeeehhhccc
Q psy12350 384 HESCGIKVVNKNVQP 398 (1129)
Q Consensus 384 ~~~~~~~~~a~~~~~ 398 (1129)
.+..|++.+|.++.+
T Consensus 296 ~A~~~g~~~a~ni~g 310 (437)
T 4eqs_A 296 GAHRAASIVAEQIAG 310 (437)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 112566666666653
No 18
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=99.89 E-value=2.4e-23 Score=236.79 Aligned_cols=289 Identities=16% Similarity=0.219 Sum_probs=189.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||+||++||..|++ .+++|+|||+++.+||.|... |+. +.+..++.+
T Consensus 4 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~----------------~~~------~~~~~~~~~ 59 (335)
T 2zbw_A 4 DHTDVLIVGAGPTGLFAGFYVGM--RGLSFRFVDPLPEPGGQLTAL----------------YPE------KYIYDVAGF 59 (335)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSCHHHHHT----------------CTT------SEECCSTTC
T ss_pred CcCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCeeecc----------------CCC------ceeeccCCC
Confidence 35899999999999999999999 569999999999999999731 110 001111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
| .....++.+++.++++++++ .++++++|+.++... +.|.+.. . ......|| +||+|
T Consensus 60 ~--------~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~i~~~~---~~~~v~~---~--~g~~~~~~-----~lv~A 116 (335)
T 2zbw_A 60 P--------KVYAKDLVKGLVEQVAPFNP--VYSLGERAETLEREG---DLFKVTT---S--QGNAYTAK-----AVIIA 116 (335)
T ss_dssp S--------SEEHHHHHHHHHHHHGGGCC--EEEESCCEEEEEEET---TEEEEEE---T--TSCEEEEE-----EEEEC
T ss_pred C--------CCCHHHHHHHHHHHHHHcCC--EEEeCCEEEEEEECC---CEEEEEE---C--CCCEEEeC-----EEEEC
Confidence 1 23467889999999988876 788899999987631 1233321 1 12356788 99999
Q ss_pred cccCC-CCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVT-LPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~-~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||..+ .|..|++||.. .+.+. +.+. .....+. .
T Consensus 117 tG~~~~~p~~~~i~g~~--~~~~~-------------~~~~----------------------------~~~~~~~---~ 150 (335)
T 2zbw_A 117 AGVGAFEPRRIGAPGER--EFEGR-------------GVYY----------------------------AVKSKAE---F 150 (335)
T ss_dssp CTTSEEEECCCCCTTTT--TTBTT-------------TEES----------------------------SCSCGGG---G
T ss_pred CCCCCCCCCCCCCCChh--hccCc-------------EEEE----------------------------ecCchhh---c
Confidence 99432 57777776521 11110 0000 0011111 1
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC------------CCCeEEcCCceEEcC
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF------------PNNVVKKPDIAELTP 314 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~------------~~~i~~~~~v~~~~~ 314 (1129)
..++++| ||+|.+|+|+|..|++.+.+|++++|++.+..... .-++.....|+++++
T Consensus 151 ~~~~v~v-----------iG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~ 219 (335)
T 2zbw_A 151 QGKRVLI-----------VGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEG 219 (335)
T ss_dssp TTCEEEE-----------ECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEE
T ss_pred CCCEEEE-----------ECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEcc
Confidence 2344444 79999999999999999999999999886643210 113444556788865
Q ss_pred C----ceEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc----
Q psy12350 315 T----GVRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---- 381 (1129)
Q Consensus 315 ~----~v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---- 381 (1129)
+ +|.++ +| +++++|.||+|+|++++.++++. .++..+. ..+....+ +.++.|++|++|.....|
T Consensus 220 ~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~~~~~-g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~ 296 (335)
T 2zbw_A 220 DERVRWAVVFHNQTQEELALEVDAVLILAGYITKLGPLAN-WGLALEK-NKIKVDTT-MATSIPGVYACGDIVTYPGKLP 296 (335)
T ss_dssp SSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECGGGGG-SCCCEET-TEEECCTT-CBCSSTTEEECSTTEECTTCCC
T ss_pred CCCeeEEEEEECCCCceEEEecCEEEEeecCCCCchHhhh-cceeccC-CeeeeCCC-CCCCCCCEEEeccccccCcchh
Confidence 4 47776 77 46899999999999999988863 4455442 22222222 235789999999875321
Q ss_pred c-cccccceeeehhhcccccccc
Q psy12350 382 F-LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 382 ~-~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
. .....|++.+|.++.+.+.+.
T Consensus 297 ~~~~A~~~g~~aa~~i~~~l~~~ 319 (335)
T 2zbw_A 297 LIVLGFGEAAIAANHAAAYANPA 319 (335)
T ss_dssp CHHHHHHHHHHHHHHHHHHHCTT
T ss_pred hhhhhHHHHHHHHHHHHHHhhhh
Confidence 1 222367888888887665544
No 19
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=99.89 E-value=6.5e-23 Score=232.06 Aligned_cols=288 Identities=16% Similarity=0.224 Sum_probs=189.8
Q ss_pred CCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccccc
Q psy12350 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMEL 84 (1129)
Q Consensus 5 ~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~ 84 (1129)
.+...++|+||||||||++||..|++ .+++|+|||++ .+||.|.+... ...+
T Consensus 4 ~~~~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~-~~gg~~~~~~~-------------------------~~~~ 55 (325)
T 2q7v_A 4 PTAHDYDVVIIGGGPAGLTAAIYTGR--AQLSTLILEKG-MPGGQIAWSEE-------------------------VENF 55 (325)
T ss_dssp CCCEEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTGGGGGCSC-------------------------BCCS
T ss_pred CccccCCEEEECCCHHHHHHHHHHHH--cCCcEEEEeCC-CCCcccccccc-------------------------cccC
Confidence 34456899999999999999999999 56999999997 79999884110 1112
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCC-CceEEeccccCccceEEecceeeeE
Q psy12350 85 SGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEH-PSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 85 ~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
+.++ ..++..++.+++.++++++++ .+++ ++|+.++.... .+. |.+... + .....|| +
T Consensus 56 ~~~~-------~~~~~~~~~~~l~~~~~~~gv--~~~~-~~v~~i~~~~~-~~~~~~v~~~---~--g~~~~~~-----~ 114 (325)
T 2q7v_A 56 PGFP-------EPIAGMELAQRMHQQAEKFGA--KVEM-DEVQGVQHDAT-SHPYPFTVRG---Y--NGEYRAK-----A 114 (325)
T ss_dssp TTCS-------SCBCHHHHHHHHHHHHHHTTC--EEEE-CCEEEEEECTT-SSSCCEEEEE---S--SCEEEEE-----E
T ss_pred CCCC-------CCCCHHHHHHHHHHHHHHcCC--EEEe-eeEEEEEeccC-CCceEEEEEC---C--CCEEEeC-----E
Confidence 2221 124567899999999999887 5665 57888765200 011 444322 1 2356788 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||+||| +.|..|++||... +.+ .+.+...+ .+..
T Consensus 115 vv~AtG--~~~~~~~i~g~~~--~~~-------------~~~~~~~~-----------------------------~~~~ 148 (325)
T 2q7v_A 115 VILATG--ADPRKLGIPGEDN--FWG-------------KGVSTCAT-----------------------------CDGF 148 (325)
T ss_dssp EEECCC--EEECCCCCTTTTT--TBT-------------TTEESCHH-----------------------------HHGG
T ss_pred EEECcC--CCcCCCCCCChhh--ccC-------------ceEEEecc-----------------------------CCHH
Confidence 999999 6678887776311 111 01110000 0000
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCC--eEEcCCceEEcC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNN--VVKKPDIAELTP 314 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~--i~~~~~v~~~~~ 314 (1129)
....++++| ||+|.+|+|+|..|++.+.+|++++|.+.+... ..... +..+..|+++.+
T Consensus 149 -~~~~~~v~V-----------vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~ 216 (325)
T 2q7v_A 149 -FYKGKKVVV-----------IGGGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQG 216 (325)
T ss_dssp -GGTTCEEEE-----------ECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEE
T ss_pred -HcCCCEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHhcCCceEecCCceEEEcc
Confidence 012344444 799999999999999999999999998765321 01123 344667888865
Q ss_pred C----ceEEc---CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---c
Q psy12350 315 T----GVRFQ---DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---F 382 (1129)
Q Consensus 315 ~----~v~~~---dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~ 382 (1129)
+ +|.++ +|+ ++++|.||+|+|++++.+++.. . +..+++..+....+ +.+++|++|++|.....+ .
T Consensus 217 ~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~-~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~ 293 (325)
T 2q7v_A 217 ADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTAFVKD-T-VSLRDDGYVDVRDE-IYTNIPMLFAAGDVSDYIYRQL 293 (325)
T ss_dssp SSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCBTT-TBCSSTTEEECSTTTCSSCCCH
T ss_pred CCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChHHHhh-h-cccCCCccEecCCC-CccCCCCEEEeecccCccHHHH
Confidence 4 47776 676 6799999999999999999874 3 44544433333333 236789999999885431 2
Q ss_pred cccccceeeehhhccccccc
Q psy12350 383 LHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 383 ~~~~~~~~~~a~~~~~~~~~ 402 (1129)
.....|++.+|.++.+.+.+
T Consensus 294 ~~A~~~g~~aa~~i~~~l~~ 313 (325)
T 2q7v_A 294 ATSVGAGTRAAMMTERQLAA 313 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33348888888888876654
No 20
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=99.88 E-value=3.7e-23 Score=234.94 Aligned_cols=288 Identities=16% Similarity=0.189 Sum_probs=191.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||+|||+||..|++ .+++|+|||+++.+||.|.+ .|+.. .+..+++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gG~~~~----------------~~~~~------~~~~~~~~~ 62 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGM--RQASVKIIESLPQLGGQLSA----------------LYPEK------YIYDVAGFP 62 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHH----------------HCTTS------EECCSTTCS
T ss_pred cceEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCCceehh----------------cCCCc------eEeccCCCC
Confidence 4799999999999999999999 66999999999999999963 12110 111222221
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
..+..++.+|+.++++++++ .++++++|+.++... ...|.+... .+ ...|| +||+||
T Consensus 63 --------~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~i~~~~--~~~~~v~~~---~g---~~~~d-----~vVlAt 119 (332)
T 3lzw_A 63 --------KIRAQELINNLKEQMAKFDQ--TICLEQAVESVEKQA--DGVFKLVTN---EE---THYSK-----TVIITA 119 (332)
T ss_dssp --------SEEHHHHHHHHHHHHTTSCC--EEECSCCEEEEEECT--TSCEEEEES---SE---EEEEE-----EEEECC
T ss_pred --------CCCHHHHHHHHHHHHHHhCC--cEEccCEEEEEEECC--CCcEEEEEC---CC---EEEeC-----EEEECC
Confidence 23568999999999998876 889999999987632 113444331 11 26788 999999
Q ss_pred ccCC-CCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 169 GHVT-LPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 169 G~~~-~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|..+ .|..|++||... +.+. +.+. .+.....+ .
T Consensus 120 G~~~~~p~~~~~~g~~~--~~g~-------------~~~~----------------------------~~~~~~~~---~ 153 (332)
T 3lzw_A 120 GNGAFKPRKLELENAEQ--YEGK-------------NLHY----------------------------FVDDLQKF---A 153 (332)
T ss_dssp TTSCCEECCCCCTTGGG--GBTT-------------TEES----------------------------SCSCGGGG---B
T ss_pred CCCcCCCCCCCCCChhh--ccCc-------------eEEE----------------------------ecCCHHHc---C
Confidence 9432 788888876321 1111 0000 00111111 2
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc--------CCCCeEEcCCceEEcCCc---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR--------FPNNVVKKPDIAELTPTG--- 316 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~--------~~~~i~~~~~v~~~~~~~--- 316 (1129)
.++++| ||+|.+|+|+|..|++.+.+|++++|.+.+.... ..-++..+..|+++++++
T Consensus 154 ~~~v~v-----------vG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~~~ 222 (332)
T 3lzw_A 154 GRRVAI-----------LGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVENLHASKVNVLTPFVPAELIGEDKIE 222 (332)
T ss_dssp TCEEEE-----------ECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHHHHHSSCEEETTEEEEEEECSSSCC
T ss_pred CCEEEE-----------ECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHHHhcCCeEEEeCceeeEEecCCceE
Confidence 344444 7999999999999999999999999988764321 111344456788887653
Q ss_pred -eEEcC-----CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc---cc--cccc
Q psy12350 317 -VRFQD-----GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR---YP--FLHE 385 (1129)
Q Consensus 317 -v~~~d-----g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~---~~--~~~~ 385 (1129)
|.+++ ++++++|.||+|+|++++.++++. .++..+ +..+....+ +..+.|++|.+|.... .| ....
T Consensus 223 ~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~-~~~~~~-~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~A 299 (332)
T 3lzw_A 223 QLVLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKN-WGLDIE-KNSIVVKST-METNIEGFFAAGDICTYEGKVNLIASG 299 (332)
T ss_dssp EEEEEETTSCCEEEEECSEEEECCCEECCCGGGGG-SSCCEE-TTEEECCTT-SBCSSTTEEECGGGEECTTCCCCHHHH
T ss_pred EEEEEecCCCceEEEECCEEEEeeccCCCchHHhh-cCcccc-CCeEEeCCC-CceecCCEEEccceecCCCCcceEeee
Confidence 78876 356799999999999999998763 445542 222222222 2247899999998752 11 1233
Q ss_pred ccceeeehhhcccccccc
Q psy12350 386 SCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~ 403 (1129)
..||+.+|.++...+.+.
T Consensus 300 ~~~g~~aa~~i~~~l~~~ 317 (332)
T 3lzw_A 300 FGEAPTAVNNAKAYMDPK 317 (332)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred hhhHHHHHHHHHHhhChh
Confidence 477778888777665543
No 21
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=99.88 E-value=1.9e-23 Score=248.68 Aligned_cols=293 Identities=14% Similarity=0.160 Sum_probs=168.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+++|+|||||+|||+||..|++.+++++|+|||+++.++ |.. .+ .+. .+.......
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~--~~~---~g------------l~~---~~~g~~~~~---- 58 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS--YGG---CG------------IPY---YVSGEVSNI---- 58 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc--ccc---cc------------cch---hhcCCCCch----
Confidence 379999999999999999999976689999999988654 110 00 000 000000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
...++...++.++.+.+++++++ .++++++|+.+++ +...+.+.+...+......|| +||+||
T Consensus 59 -----~~~~~~~~~~~~~~~~~~~~~gi--~~~~~~~V~~id~-----~~~~v~~~~~~~g~~~~~~~d-----~lviAt 121 (472)
T 3iwa_A 59 -----ESLQATPYNVVRDPEFFRINKDV--EALVETRAHAIDR-----AAHTVEIENLRTGERRTLKYD-----KLVLAL 121 (472)
T ss_dssp ---------------------------C--EEECSEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEECC
T ss_pred -----HHhccccchhccCHHHHhhhcCc--EEEECCEEEEEEC-----CCCEEEEeecCCCCEEEEECC-----EEEEeC
Confidence 00011122356667777777776 7889999999876 445555554333444467899 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... .+. ..... ...+....+.+.....
T Consensus 122 G--~~p~~p~i~G~~~---~~v---------------~~~~~----------------------~~~~~~l~~~l~~~~~ 159 (472)
T 3iwa_A 122 G--SKANRPPVEGMDL---AGV---------------TPVTN----------------------LDEAEFVQHAISAGEV 159 (472)
T ss_dssp C--EEECCCSCTTTTS---BTE---------------EECCS----------------------HHHHHHHHHHCCTTSC
T ss_pred C--CCcCCCCCCCCCC---CCE---------------EEeCC----------------------HHHHHHHHHHhhcCCC
Confidence 9 7888888877321 110 00000 0000000000000112
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhccc-ccEEEEccccCCccc-ccCC--------------CCeEEcCCceEE
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTE-ATTVFLSHHSEHVKK-LRFP--------------NNVVKKPDIAEL 312 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~-~~~V~lv~r~~~~~~-~~~~--------------~~i~~~~~v~~~ 312 (1129)
++++| ||+|++|+|+|..+++. +.+|+++++.+.+++ ...+ -++..++.|+++
T Consensus 160 ~~vvV-----------iGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i 228 (472)
T 3iwa_A 160 SKAVI-----------VGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRL 228 (472)
T ss_dssp SEEEE-----------ECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred CEEEE-----------ECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEE
Confidence 33443 79999999999999999 999999999987766 2221 145556788888
Q ss_pred cC-Cc---eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc--------
Q psy12350 313 TP-TG---VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-------- 380 (1129)
Q Consensus 313 ~~-~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-------- 380 (1129)
++ ++ |.++||+++++|.||+|||++++.+++. ..++.++++..+....++ .++.|++|++|.....
T Consensus 229 ~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~-~~gl~~~~~g~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~g~~ 306 (472)
T 3iwa_A 229 EGENGKVARVITDKRTLDADLVILAAGVSPNTQLAR-DAGLELDPRGAIIVDTRM-RTSDPDIFAGGDCVTIPNLVTGKP 306 (472)
T ss_dssp EESSSBEEEEEESSCEEECSEEEECSCEEECCHHHH-HHTCCBCTTCCEECCTTC-BCSSTTEEECGGGEEEEBTTTSSE
T ss_pred EccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHH-hCCccCCCCCCEEECCCc-ccCCCCEEEeccceecccccCCce
Confidence 75 32 6788999999999999999999988764 344555544433222222 2578999999987521
Q ss_pred ---cc-cccccceeeehhhcc
Q psy12350 381 ---PF-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 381 ---~~-~~~~~~~~~~a~~~~ 397 (1129)
|+ .....|++.+|.++.
T Consensus 307 ~~~~~~~~A~~~g~~aa~~i~ 327 (472)
T 3iwa_A 307 GFFPLGSMANRQGRVIGTNLA 327 (472)
T ss_dssp ECCCCTTHHHHHHHHHHHHHT
T ss_pred eecchHHHHHHHHHHHHHHhc
Confidence 11 112366666666665
No 22
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=99.88 E-value=1.6e-23 Score=256.29 Aligned_cols=290 Identities=17% Similarity=0.230 Sum_probs=188.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||+|||+||.+|++.+++++|+|||+++.+| |. + .. ++..+ .+
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~--~~--~-------------~~-------lp~~~---~g- 86 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS--FA--N-------------CG-------LPYYI---GG- 86 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS--BC--G-------------GG-------HHHHH---TT-
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc--cc--C-------------CC-------Cchhh---cC-
Confidence 3579999999999999999999976689999999988654 11 0 00 00000 00
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
........+.++++.+++++++ .++++++|+.++. +...+.+.+...+......|| +||+|
T Consensus 87 -------~~~~~~~~~~~~~~~~~~~~gi--~v~~~~~V~~id~-----~~~~v~v~~~~~g~~~~~~~d-----~lviA 147 (588)
T 3ics_A 87 -------VITERQKLLVQTVERMSKRFNL--DIRVLSEVVKINK-----EEKTITIKNVTTNETYNEAYD-----VLILS 147 (588)
T ss_dssp -------SSCCGGGGBSSCHHHHHHHTTC--EEECSEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEEC
T ss_pred -------cCCChHHhhccCHHHHHHhcCc--EEEECCEEEEEEC-----CCCEEEEeecCCCCEEEEeCC-----EEEEC
Confidence 0011122344566777888887 7899999999876 445566654434443467799 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||... ..+. ........ .......+....
T Consensus 148 tG--~~p~~p~i~G~~~--~~~v---------~~~~~~~~----------------------------~~~~~~~l~~~~ 186 (588)
T 3ics_A 148 PG--AKPIVPSIPGIEE--AKAL---------FTLRNVPD----------------------------TDRIKAYIDEKK 186 (588)
T ss_dssp CC--EEECCCCCTTTTT--CTTE---------EECSSHHH----------------------------HHHHHHHHHHHC
T ss_pred CC--CCCCCCCCCCccc--CCCe---------EEeCCHHH----------------------------HHHHHHHHhhcC
Confidence 99 7888888877310 0000 00000000 000000010112
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELT 313 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~ 313 (1129)
.++++| ||+|++|+|+|..|++.|.+|+++++.+.+++...+ -++..++.|++++
T Consensus 187 ~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 255 (588)
T 3ics_A 187 PRHATV-----------IGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALE 255 (588)
T ss_dssp CSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEE
T ss_pred CCeEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEe
Confidence 234444 899999999999999999999999998877664221 1455677899997
Q ss_pred C--CceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----------
Q psy12350 314 P--TGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY----------- 380 (1129)
Q Consensus 314 ~--~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~----------- 380 (1129)
+ ++|.++||+++++|.||+|||++++.++++ ..++.++++..+....+ +.++.|++|++|.....
T Consensus 256 ~~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~-~~g~~~~~~g~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~ 333 (588)
T 3ics_A 256 ENGAVVRLKSGSVIQTDMLILAIGVQPESSLAK-GAGLALGVRGTIKVNEK-FQTSDPHIYAIGDAIEVKDFVTETETMI 333 (588)
T ss_dssp GGGTEEEETTSCEEECSEEEECSCEEECCHHHH-HTTCCBCGGGCBCCCTT-SBCSSTTEEECGGGBCEEBTTTCCEECC
T ss_pred cCCCEEEECCCCEEEcCEEEEccCCCCChHHHH-hcCceEcCCCCEEECCc-cccCCCCEEEeeeeeecccccCCccccc
Confidence 6 469999999999999999999999988875 35566655443333332 22578999999987521
Q ss_pred cc-cccccceeeehhhccc
Q psy12350 381 PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 381 ~~-~~~~~~~~~~a~~~~~ 398 (1129)
++ ..+..||+.+|.++.+
T Consensus 334 ~~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 334 PLAWPANRQGRMLADIIHG 352 (588)
T ss_dssp CCHHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHhcC
Confidence 11 1123666666666653
No 23
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=99.88 E-value=1.2e-22 Score=230.95 Aligned_cols=285 Identities=16% Similarity=0.194 Sum_probs=190.1
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
+..++|+||||||||++||..|++ .+++|+|||+. .+||.|.+... ...++.
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~-~~gg~~~~~~~-------------------------~~~~~~ 63 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAAR--AQLAPLVFEGT-SFGGALMTTTD-------------------------VENYPG 63 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHH--TTCCCEEECCS-SCSCGGGSCSC-------------------------BCCSTT
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-CCCCceeccch-------------------------hhhcCC
Confidence 345899999999999999999999 56999999984 78998874111 011111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCce-EEeccccCccceEEecceeeeEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSM-CIIGIPRDTVGFYLFDLQVRFFLQ 165 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~lv 165 (1129)
++ ......++.+++.++++++++ .+++++ |+.++. .+.|.+ .. .. .....|| +||
T Consensus 64 ~~-------~~~~~~~~~~~l~~~~~~~~v--~~~~~~-v~~i~~----~~~~~v~~~---~~--g~~~~~d-----~lv 119 (335)
T 2a87_A 64 FR-------NGITGPELMDEMREQALRFGA--DLRMED-VESVSL----HGPLKSVVT---AD--GQTHRAR-----AVI 119 (335)
T ss_dssp CT-------TCBCHHHHHHHHHHHHHHTTC--EEECCC-EEEEEC----SSSSEEEEE---TT--SCEEEEE-----EEE
T ss_pred CC-------CCCCHHHHHHHHHHHHHHcCC--EEEEee-EEEEEe----CCcEEEEEe---CC--CCEEEeC-----EEE
Confidence 11 123567899999999998877 777776 877764 134544 22 11 2356789 999
Q ss_pred EecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 166 LMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 166 vAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
+||| +.|..|++||... +.+ .+.+...+ ....+
T Consensus 120 iAtG--~~~~~~~i~g~~~--~~~-------------~~~~~~~~----------------------------~~~~~-- 152 (335)
T 2a87_A 120 LAMG--AAARYLQVPGEQE--LLG-------------RGVSSCAT----------------------------CDGFF-- 152 (335)
T ss_dssp ECCC--EEECCCCCTHHHH--TBT-------------TTEESCHH----------------------------HHGGG--
T ss_pred ECCC--CCccCCCCCchHh--ccC-------------CceEEeec----------------------------cchhh--
Confidence 9999 6778888876321 111 01111000 00001
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-------CCCC--eEEcCCceEEcCCc
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-------FPNN--VVKKPDIAELTPTG 316 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-------~~~~--i~~~~~v~~~~~~~ 316 (1129)
...++++| ||+|.+|+|+|..|++.+.+|++++|++.+.... .... +..+..|+++++++
T Consensus 153 ~~~~~v~V-----------iG~G~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~~~~~~~gV~v~~~~~v~~i~~~~ 221 (335)
T 2a87_A 153 FRDQDIAV-----------IGGGDSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDT 221 (335)
T ss_dssp GTTCEEEE-----------ECSSHHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHHHHHHCTTEEEECSEEEEEEECSS
T ss_pred cCCCEEEE-----------ECCCHHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHHHHhccCCcEEEeCceeEEEecCC
Confidence 12344444 7999999999999999999999999987653211 0123 34456788887654
Q ss_pred ----eEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---ccc
Q psy12350 317 ----VRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLH 384 (1129)
Q Consensus 317 ----v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~ 384 (1129)
|.++ +| +++++|.||+|+|++++.++++. ++..+++..+....+.+.++.|++|++|.....+ ...
T Consensus 222 ~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~ 299 (335)
T 2a87_A 222 TVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLVRE--AIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVT 299 (335)
T ss_dssp SCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTTBT--TBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHH
T ss_pred cEeEEEEEEcCCCceEEeecCEEEEccCCccChhHhhc--ccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHH
Confidence 7776 45 46799999999999999999862 4556555544444444457899999999886432 122
Q ss_pred cccceeeehhhcccccccc
Q psy12350 385 ESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 385 ~~~~~~~~a~~~~~~~~~~ 403 (1129)
...|++.+|.++...+.++
T Consensus 300 A~~~g~~aA~~i~~~l~~~ 318 (335)
T 2a87_A 300 AAGSGCAAAIDAERWLAEH 318 (335)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhhcC
Confidence 3477778888777665443
No 24
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=99.88 E-value=1e-22 Score=231.26 Aligned_cols=292 Identities=13% Similarity=0.192 Sum_probs=189.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcc----cCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ----TDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~----~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
..++|+||||||+|+++|..|++ .+++|+|||+ ...+||.|.+.. ....
T Consensus 7 ~~~~vvIIG~G~aGl~~A~~l~~--~g~~v~lie~~~~~~~~~gg~~~~~~-------------------------~~~~ 59 (333)
T 1vdc_A 7 HNTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTT-------------------------DVEN 59 (333)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCS-------------------------EECC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCccccCCCceeeecc-------------------------cccc
Confidence 35799999999999999999999 5699999999 566787776310 0111
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
++.|| ......++.+++.+++++.++ .+++++ |+.++... +.|. +.. ......|| +
T Consensus 60 ~~~~~-------~~~~~~~~~~~l~~~~~~~gv--~~~~~~-v~~i~~~~---~~~~--v~~----~~~~~~~~-----~ 115 (333)
T 1vdc_A 60 FPGFP-------EGILGVELTDKFRKQSERFGT--TIFTET-VTKVDFSS---KPFK--LFT----DSKAILAD-----A 115 (333)
T ss_dssp STTCT-------TCEEHHHHHHHHHHHHHHTTC--EEECCC-CCEEECSS---SSEE--EEC----SSEEEEEE-----E
T ss_pred CCCCc-------cCCCHHHHHHHHHHHHHHCCC--EEEEeE-EEEEEEcC---CEEE--EEE----CCcEEEcC-----E
Confidence 22221 123567889999999988876 677776 88776521 2233 332 12456788 9
Q ss_pred EEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 164 LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 164 lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
||+||| +.|..|++||..... + .+...+.++..+ ....+
T Consensus 116 vv~A~G--~~~~~~~~~g~~~~~--~---------~~~~~~~~~~~~----------------------------~~~~~ 154 (333)
T 1vdc_A 116 VILAIG--AVAKRLSFVGSGEVL--G---------GFWNRGISACAV----------------------------CDGAA 154 (333)
T ss_dssp EEECCC--EEECCCCCBTCSSSS--S---------CCBTTTEESCHH----------------------------HHTTS
T ss_pred EEECCC--CCcCCCCCCCccccc--c---------ccccCcEEEecc----------------------------Cccch
Confidence 999999 567788777632100 0 000011111100 00011
Q ss_pred ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCCe--EEcCCceEEcC
Q psy12350 244 TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNNV--VKKPDIAELTP 314 (1129)
Q Consensus 244 ~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~i--~~~~~v~~~~~ 314 (1129)
.....++++| ||+|.+|+|+|..|++.+.+|++++|++.+... .....| ..+..|+++++
T Consensus 155 ~~~~~~~v~V-----------vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~ 223 (333)
T 1vdc_A 155 PIFRNKPLAV-----------IGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYG 223 (333)
T ss_dssp GGGTTSEEEE-----------ECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEE
T ss_pred hhcCCCeEEE-----------ECCChHHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHHhCCCeeEecCCceEEEeC
Confidence 0012344444 799999999999999999999999998865321 112233 44567888864
Q ss_pred Cc-------eEEc---CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc-
Q psy12350 315 TG-------VRFQ---DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP- 381 (1129)
Q Consensus 315 ~~-------v~~~---dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~- 381 (1129)
++ |.++ +| +++++|.||+|+|++++.++++. ++..+++..+....+.+.++.|++|++|.....+
T Consensus 224 ~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~ 301 (333)
T 1vdc_A 224 DGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLDG--GVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKY 301 (333)
T ss_dssp SSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT--SSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSC
T ss_pred CCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhhc--cccccCCCCEEechhhcccCCCCEEEeeeccCCCc
Confidence 32 7776 45 46799999999999999998873 3555555544444444456889999999886432
Q ss_pred --ccccccceeeehhhccccccccc
Q psy12350 382 --FLHESCGIKVVNKNVQPLYKHLI 404 (1129)
Q Consensus 382 --~~~~~~~~~~~a~~~~~~~~~~~ 404 (1129)
......|++.+|.++...+.++-
T Consensus 302 ~~~~~A~~~g~~aa~~i~~~l~~~~ 326 (333)
T 1vdc_A 302 RQAITAAGTGCMAALDAEHYLQEIG 326 (333)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred hhHHHHHHhHHHHHHHHHHHHHhcc
Confidence 23334778888888877665553
No 25
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=99.88 E-value=1.3e-22 Score=233.14 Aligned_cols=290 Identities=20% Similarity=0.258 Sum_probs=188.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||..|++ .+++|+|||+++.+||.|... ++. +.+..++.+
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~----------------~~~------~~~~~~~~~ 68 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGM--NNISCRIIESMPQLGGQLAAL----------------YPE------KHIYDVAGF 68 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHT----------------CTT------SEECCSTTC
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCccccc----------------CCC------cccccCCCC
Confidence 45799999999999999999999 669999999999999999731 110 001111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+ .....++.+++.++++++++ .++++++|+.++... ...|.+.. .+ .....|| +||+|
T Consensus 69 ~--------~~~~~~~~~~l~~~~~~~~~--~~~~~~~v~~i~~~~--~~~~~v~~---~~--g~~~~~~-----~li~A 126 (360)
T 3ab1_A 69 P--------EVPAIDLVESLWAQAERYNP--DVVLNETVTKYTKLD--DGTFETRT---NT--GNVYRSR-----AVLIA 126 (360)
T ss_dssp S--------SEEHHHHHHHHHHHHHTTCC--EEECSCCEEEEEECT--TSCEEEEE---TT--SCEEEEE-----EEEEC
T ss_pred C--------CCCHHHHHHHHHHHHHHhCC--EEEcCCEEEEEEECC--CceEEEEE---CC--CcEEEee-----EEEEc
Confidence 1 12467889999999988876 788999999987631 11233322 11 2356788 99999
Q ss_pred cccCC-CCCcccccc-chhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 168 QGHVT-LPSKAEMLA-DTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 168 tG~~~-~p~~p~i~g-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
||..+ .|..|++|| .. .+.+. +.+. .+...+.
T Consensus 127 tG~~~~~~~~~~i~g~~~--~~~~~-------------~v~~----------------------------~~~~~~~--- 160 (360)
T 3ab1_A 127 AGLGAFEPRKLPQLGNID--HLTGS-------------SVYY----------------------------AVKSVED--- 160 (360)
T ss_dssp CTTCSCCBCCCGGGCCCT--TTBTT-------------TEES----------------------------SCSCGGG---
T ss_pred cCCCcCCCCCCCCCCchh--hCcCc-------------eEEE----------------------------ecCCHHH---
Confidence 99543 677777765 21 11110 0000 0011111
Q ss_pred ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-----C-----C--CCeEEcCCceEEc
Q psy12350 246 FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-----F-----P--NNVVKKPDIAELT 313 (1129)
Q Consensus 246 ~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-----~-----~--~~i~~~~~v~~~~ 313 (1129)
...++++| ||+|.+|+|+|..|++.+.+|++++|.+.+.... + . -++.....|++++
T Consensus 161 ~~~~~vvV-----------vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~ 229 (360)
T 3ab1_A 161 FKGKRVVI-----------VGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIE 229 (360)
T ss_dssp GTTCEEEE-----------ECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEE
T ss_pred cCCCcEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhc
Confidence 12344444 7999999999999999999999999987654321 0 0 1234455678886
Q ss_pred CC-----ceEEc--CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---
Q psy12350 314 PT-----GVRFQ--DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP--- 381 (1129)
Q Consensus 314 ~~-----~v~~~--dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~--- 381 (1129)
++ +|.+. +| +++++|.||+|+|++++.++++. .++..+ +..+....+ +..+.|++|++|.....|
T Consensus 230 ~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~~~~-~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~ 306 (360)
T 3ab1_A 230 ESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLAR-WDLELY-ENALVVDSH-MKTSVDGLYAAGDIAYYPGKL 306 (360)
T ss_dssp EETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCGGGGG-SSCCEE-TTEEECCTT-SBCSSTTEEECSTTEECTTCC
T ss_pred cCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHh-hccccc-cCeeeecCC-CcCCCCCEEEecCccCCCCcc
Confidence 43 47775 78 46799999999999999988863 445554 222222222 225789999999875321
Q ss_pred -c-cccccceeeehhhcccccccc
Q psy12350 382 -F-LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 382 -~-~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
. .....|++.+|.++.+.+.+.
T Consensus 307 ~~~~~A~~~g~~aa~~i~~~l~~~ 330 (360)
T 3ab1_A 307 KIIQTGLSEATMAVRHSLSYIKPG 330 (360)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHSCC
T ss_pred ceeehhHHHHHHHHHHHHhhcCCc
Confidence 1 222367888888887665544
No 26
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=99.88 E-value=2.9e-22 Score=226.10 Aligned_cols=283 Identities=14% Similarity=0.196 Sum_probs=186.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
...++|+||||||||++||..|++ .|++|+|||+ ..+||.|.+... +..++.
T Consensus 14 ~~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~-~~~gg~~~~~~~-------------------------~~~~~~ 65 (319)
T 3cty_A 14 ERDFDVVIVGAGAAGFSAAVYAAR--SGFSVAILDK-AVAGGLTAEAPL-------------------------VENYLG 65 (319)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SSTTGGGGGCSC-------------------------BCCBTT
T ss_pred cCCCcEEEECcCHHHHHHHHHHHh--CCCcEEEEeC-CCCCccccccch-------------------------hhhcCC
Confidence 345799999999999999999999 5689999999 578998874110 001111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
| ......++.+++.++++++++ .+++ ++|+.++... +.|.+ .. . .....|| +||+
T Consensus 66 ~--------~~~~~~~~~~~~~~~~~~~~v--~~~~-~~v~~i~~~~---~~~~v--~~--~--~~~~~~~-----~li~ 120 (319)
T 3cty_A 66 F--------KSIVGSELAKLFADHAANYAK--IREG-VEVRSIKKTQ---GGFDI--ET--N--DDTYHAK-----YVII 120 (319)
T ss_dssp B--------SSBCHHHHHHHHHHHHHTTSE--EEET-CCEEEEEEET---TEEEE--EE--S--SSEEEEE-----EEEE
T ss_pred C--------cccCHHHHHHHHHHHHHHcCC--EEEE-eeEEEEEEeC---CEEEE--EE--C--CCEEEeC-----EEEE
Confidence 1 123556888999998988876 5666 6788776521 22333 22 1 2356788 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|..|++||... +.+ .+.+... ..+.. ..
T Consensus 121 AtG--~~~~~~~i~g~~~--~~~-------------~~~~~~~-----------------------------~~~~~-~~ 153 (319)
T 3cty_A 121 TTG--TTHKHLGVKGESE--YFG-------------KGTSYCS-----------------------------TCDGY-LF 153 (319)
T ss_dssp CCC--EEECCCCCBTTTT--TBT-------------TTEESCH-----------------------------HHHGG-GG
T ss_pred CCC--CCcccCCCCChHH--hCC-------------ceEEEEE-----------------------------ecchh-hc
Confidence 999 6677887766311 100 0110000 00000 01
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc--------cCCCCeEEcCCceEEcCC---
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL--------RFPNNVVKKPDIAELTPT--- 315 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~--------~~~~~i~~~~~v~~~~~~--- 315 (1129)
..++++| ||+|.+|+|+|..|++.+++|++++|.+.+... ...-++.....|+++.++
T Consensus 154 ~~~~v~v-----------iG~G~~g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~ 222 (319)
T 3cty_A 154 KGKRVVT-----------IGGGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQEIKKRNIPYIMNAQVTEIVGDGKK 222 (319)
T ss_dssp BTSEEEE-----------ECCSHHHHHHHHHHTTTBSEEEEECSSSSCCSCHHHHHHHHHTTCCEECSEEEEEEEESSSS
T ss_pred CCCeEEE-----------ECCCHHHHHHHHHHHhhCCcEEEEEcCCccCCCHHHHHHHhcCCcEEEcCCeEEEEecCCce
Confidence 2344444 799999999999999999999999998765321 111245566778888643
Q ss_pred --ceEEc---CCC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccc
Q psy12350 316 --GVRFQ---DGS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHE 385 (1129)
Q Consensus 316 --~v~~~---dg~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~ 385 (1129)
+|.+. +|+ ++++|.||+|+|++++.+++. ..++..+++..+....+ +.++.|++|++|.....| ...+
T Consensus 223 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~-~~gl~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A 300 (319)
T 3cty_A 223 VTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTSFLK-DSGVKLDERGYIVVDSR-QRTSVPGVYAAGDVTSGNFAQIASA 300 (319)
T ss_dssp EEEEEEEETTTCCEEEECCSEEEECCCEEECCGGGT-TSCCCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHH
T ss_pred EEEEEEEEcCCCceEEEecCEEEEeeCCccChHHHh-hccccccCCccEeCCCC-CccCCCCEEEeecccCcchhhHHHH
Confidence 36775 676 579999999999999999987 45566665444433333 336789999999885432 1223
Q ss_pred ccceeeehhhccccccc
Q psy12350 386 SCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 386 ~~~~~~~a~~~~~~~~~ 402 (1129)
..||+.+|.++...+.+
T Consensus 301 ~~~g~~aa~~i~~~l~~ 317 (319)
T 3cty_A 301 VGDGCKAALSLYSDSIS 317 (319)
T ss_dssp HHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 47888888887765543
No 27
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=99.88 E-value=3.6e-23 Score=242.10 Aligned_cols=269 Identities=16% Similarity=0.112 Sum_probs=165.7
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcc
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKE 80 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~ 80 (1129)
||+..+...++|+|||||+||++||.+|++.|...+|+|+|+++.++.... .+++.
T Consensus 1 M~~~~~~~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~------------------------~l~~~ 56 (415)
T 3lxd_A 1 MASEVQAERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERP------------------------PLSKE 56 (415)
T ss_dssp ------CCEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSG------------------------GGGTT
T ss_pred CCCcccCCCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcc------------------------cCCHH
Confidence 665444556899999999999999999999665556999999875421100 01111
Q ss_pred ccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 81 IMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 81 ~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
..... ....++..+..++..+.++ .++++++|+.+++ +.+.+... ......||
T Consensus 57 ~~~~~------------~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~id~-----~~~~v~~~-----~g~~~~~d--- 109 (415)
T 3lxd_A 57 YLARE------------KTFERICIRPAQFWEDKAV--EMKLGAEVVSLDP-----AAHTVKLG-----DGSAIEYG--- 109 (415)
T ss_dssp TTTTS------------SCSGGGBSSCHHHHHHTTE--EEEETCCEEEEET-----TTTEEEET-----TSCEEEEE---
T ss_pred HHcCC------------CCHHHhccCCHHHHHHCCc--EEEeCCEEEEEEC-----CCCEEEEC-----CCCEEEee---
Confidence 10000 0001111112334455555 7888999998876 33444331 22456799
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+||+||| +.|..|++||... .+ .+.... .+.+....
T Consensus 110 --~lvlAtG--~~~~~~~i~g~~~---~~---------------v~~~~~----------------------~~d~~~l~ 145 (415)
T 3lxd_A 110 --KLIWATG--GDPRRLSCVGADL---AG---------------VHAVRT----------------------KEDADRLM 145 (415)
T ss_dssp --EEEECCC--EECCCCBTTSSCC---BT---------------EECCCS----------------------HHHHHHHH
T ss_pred --EEEEccC--CccCCCCCCCccc---cC---------------EEEEcC----------------------HHHHHHHH
Confidence 9999999 7899888877321 11 000000 00000000
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEE
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVK 305 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~ 305 (1129)
..+. ...++++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -++..
T Consensus 146 ~~~~-~~~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~ 213 (415)
T 3lxd_A 146 AELD-AGAKNAVV-----------IGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRT 213 (415)
T ss_dssp HHHH-TTCCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred HHhh-hcCCeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEE
Confidence 0010 00234444 799999999999999999999999999877653222 15667
Q ss_pred cCCceEEcCC-----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 306 KPDIAELTPT-----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 306 ~~~v~~~~~~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
++.|++++++ +|.++||+++++|.||+|+|++++.++++ ..++..+....++-+. .+++|++|++|.....
T Consensus 214 ~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~l~~-~~gl~~~~gi~vd~~~---~t~~~~iyA~GD~a~~ 289 (415)
T 3lxd_A 214 GAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVGALI-SAGASGGNGVDVDEFC---RTSLTDVYAIGDCAAH 289 (415)
T ss_dssp TCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCHHHH-HTTCCCSSSEECCTTC---BCSSTTEEECGGGEEE
T ss_pred CCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChHHHH-hCCCCcCCCEEECCCC---CcCCCCEEEEEeeeee
Confidence 8889998753 47889999999999999999999988765 2344444221222222 2478999999987543
No 28
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=99.87 E-value=3.2e-22 Score=238.48 Aligned_cols=207 Identities=14% Similarity=0.155 Sum_probs=127.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCC------------CceEEEEcccCCcCceEecCCCCCCCCCCCCccCccccccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGS------------GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTN 76 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~------------~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~ 76 (1129)
.+||+||||||+||++|..|.+.+. +.....|||.+..+ |. ...+|++.+++
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~--Wh--------------~g~~~p~~~~q 102 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFA--WH--------------SGMLVPGSKMQ 102 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCC--SS--------------GGGCCTTCBCS
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCC--cC--------------CCCCCCCcccc
Confidence 3799999999999999999987432 22344555554443 32 11234444443
Q ss_pred CC--ccccccCC---------C--------CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecccccc--
Q psy12350 77 LP--KEIMELSG---------Y--------HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLIN-- 135 (1129)
Q Consensus 77 ~~--~~~~~~~d---------~--------~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~-- 135 (1129)
++ +++..+.| | +++. ....||++.++.+|++.+|++|+. +|+|+++|++|+.....
T Consensus 103 ~~fl~Dlvtl~~P~s~~sf~~yl~~~~rl~~f~~-~~~~~p~r~E~~~Yl~~~A~~~~~--~vrf~~~V~~v~~~~~~~~ 179 (501)
T 4b63_A 103 ISFIKDLATLRDPRSSFTFLNYLHQKGRLIHFTN-LSTFLPARLEFEDYMRWCAQQFSD--VVAYGEEVVEVIPGKSDPS 179 (501)
T ss_dssp SCGGGSSSTTTCTTCTTSHHHHHHHHTCHHHHHT-TCCSCCBHHHHHHHHHHHHHTTGG--GEEESEEEEEEEEECSSTT
T ss_pred ccchhhhccccCCCCccchHHHHHHhCCccCCcc-ccCCCCCHHHHHHHHHHHHHHcCC--ceEcceEEEeecccccccc
Confidence 32 11111110 0 1111 134589999999999999999864 89999999999763321
Q ss_pred ---CCCCceEEeccccCccceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhh
Q psy12350 136 ---IEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLN 212 (1129)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 212 (1129)
.+.|.|++.+...+......++ .||+||| ..|++|++++ +.| +..|+..|..
T Consensus 180 ~~~~~~~~V~~~~~~~g~~~~~~ar-----~vVlatG--~~P~iP~~~~-----~~g-------------~v~Hss~y~~ 234 (501)
T 4b63_A 180 SSVVDFFTVRSRNVETGEISARRTR-----KVVIAIG--GTAKMPSGLP-----QDP-------------RIIHSSKYCT 234 (501)
T ss_dssp SSCBCEEEEEEEETTTCCEEEEEEE-----EEEECCC--CEECCCTTSC-----CCT-------------TEEEGGGHHH
T ss_pred ccccceEEEEEecCCCceEEEEEeC-----EEEECcC--CCCCCCCCCC-----CCc-------------ceeecccccc
Confidence 1236777666555555555666 9999999 6677775532 111 2244444311
Q ss_pred cccccccCCCCCCccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc--ccEEEEccc
Q psy12350 213 SLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE--ATTVFLSHH 290 (1129)
Q Consensus 213 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~--~~~V~lv~r 290 (1129)
+.. ....+.+ ++|+|+| ||+|.||+|++..|++. +.+|+++.|
T Consensus 235 ~~~---------------------~~~~~~~---~gKrV~V-----------VG~G~SA~ei~~~L~~~~~~~~v~~~~R 279 (501)
T 4b63_A 235 TLP---------------------ALLKDKS---KPYNIAV-----------LGSGQSAAEIFHDLQKRYPNSRTTLIMR 279 (501)
T ss_dssp HHH---------------------HHSCCTT---SCCEEEE-----------ECCSHHHHHHHHHHHHHSTTCEEEEECS
T ss_pred chh---------------------hcccccc---CCcEEEE-----------ECCcHHHHHHHHHHHhcCCCceEEEEeC
Confidence 100 0112222 3455555 79999999999999865 689999999
Q ss_pred cCCc
Q psy12350 291 SEHV 294 (1129)
Q Consensus 291 ~~~~ 294 (1129)
++.+
T Consensus 280 ~~~~ 283 (501)
T 4b63_A 280 DSAM 283 (501)
T ss_dssp SSSC
T ss_pred CCcc
Confidence 8643
No 29
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=99.87 E-value=2.4e-22 Score=237.66 Aligned_cols=259 Identities=14% Similarity=0.164 Sum_probs=164.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+|||+||.+|++.+++++|+|||+++.+|.... + .+.|. ....
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~-----~---------~~~~~------~~~~-------- 54 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSG-----G---------LSAYF------NHTI-------- 54 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------------------
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCc-----c---------chhhh------cCCC--------
Confidence 699999999999999999999766899999999887762110 0 00000 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
....++..+..+...++++ .++++++|+.++. +...+.+. ..+......|| +||+|||
T Consensus 55 --------~~~~~~~~~~~~~~~~~gi--~~~~~~~V~~id~-----~~~~v~v~--~~~~~~~~~~d-----~lviAtG 112 (452)
T 3oc4_A 55 --------NELHEARYITEEELRRQKI--QLLLNREVVAMDV-----ENQLIAWT--RKEEQQWYSYD-----KLILATG 112 (452)
T ss_dssp --------------CCCCHHHHHHTTE--EEECSCEEEEEET-----TTTEEEEE--ETTEEEEEECS-----EEEECCC
T ss_pred --------CCHHHhhcCCHHHHHHCCC--EEEECCEEEEEEC-----CCCEEEEE--ecCceEEEEcC-----EEEECCC
Confidence 0001111111233345555 7788999999876 33444443 12234567789 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc-c-cc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT-E-FR 247 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~-~~ 247 (1129)
+.|..|++||.....+ .... .+ .....+. . ..
T Consensus 113 --~~p~~p~i~g~~~~~v------------------~~~~----------------------~~----~~~~~~~~~~~~ 146 (452)
T 3oc4_A 113 --ASQFSTQIRGSQTEKL------------------LKYK----------------------FL----SGALAAVPLLEN 146 (452)
T ss_dssp --CCBCCCCCBTTTCTTE------------------EEGG----------------------GC----C----CCHHHHT
T ss_pred --cccCCCCCCCCCCCCE------------------EEeC----------------------CH----HHHHHHHHHHhc
Confidence 7899998877321100 0000 00 0111111 0 11
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEE
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAEL 312 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~ 312 (1129)
.++++| ||+|++|+|+|..+++.|.+|+++++.+.+++..++. ++..++.|+++
T Consensus 147 ~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i 215 (452)
T 3oc4_A 147 SQTVAV-----------IGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGI 215 (452)
T ss_dssp CSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEE
T ss_pred CCEEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 233333 8999999999999999999999999998876642211 45667889988
Q ss_pred c--CCc--eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 313 T--PTG--VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 313 ~--~~~--v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
+ +++ |.+.+| ++++|.||+|||++++.++++.. +..+++..+....+ +.+++|++|++|....
T Consensus 216 ~~~~~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~~--~~~~~~g~i~vd~~-~~t~~~~IyA~GD~~~ 282 (452)
T 3oc4_A 216 EETANGIVLETSEQ-EISCDSGIFALNLHPQLAYLDKK--IQRNLDQTIAVDAY-LQTSVPNVFAIGDCIS 282 (452)
T ss_dssp EECSSCEEEEESSC-EEEESEEEECSCCBCCCSSCCTT--SCBCTTSCBCCCTT-CBCSSTTEEECGGGBC
T ss_pred EccCCeEEEEECCC-EEEeCEEEECcCCCCChHHHHhh--hccCCCCCEEECcC-ccCCCCCEEEEEeeEE
Confidence 7 333 556666 89999999999999999998742 55555443333332 2257899999998754
No 30
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=99.87 E-value=2.5e-22 Score=226.14 Aligned_cols=285 Identities=15% Similarity=0.193 Sum_probs=189.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEE-EcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTT-FEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v-~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+|||||+|||+||..|++ .+++|+| +|| +.+||.|.+... ...++.+
T Consensus 4 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~li~e~-~~~gG~~~~~~~-------------------------~~~~~~~ 55 (315)
T 3r9u_A 4 MLDVAIIGGGPAGLSAGLYATR--GGLKNVVMFEK-GMPGGQITSSSE-------------------------IENYPGV 55 (315)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--HTCSCEEEECS-SSTTGGGGGCSC-------------------------BCCSTTC
T ss_pred CceEEEECCCHHHHHHHHHHHH--CCCCeEEEEeC-CCCCceeeeece-------------------------eccCCCC
Confidence 4799999999999999999999 5699999 999 779999985111 1111111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+...+..++.+|++++++++++ .++++ +|+.+ ... ..+.|.+.+. .+. .+.|| +||+|
T Consensus 56 -------~~~~~~~~~~~~~~~~~~~~~v--~~~~~-~v~~i-~~~-~~~~~~v~~~---~~~--~~~~d-----~lvlA 113 (315)
T 3r9u_A 56 -------AQVMDGISFMAPWSEQCMRFGL--KHEMV-GVEQI-LKN-SDGSFTIKLE---GGK--TELAK-----AVIVC 113 (315)
T ss_dssp -------CSCBCHHHHHHHHHHHHTTTCC--EEECC-CEEEE-EEC-TTSCEEEEET---TSC--EEEEE-----EEEEC
T ss_pred -------CCCCCHHHHHHHHHHHHHHcCc--EEEEE-EEEEE-ecC-CCCcEEEEEe---cCC--EEEeC-----EEEEe
Confidence 1245778999999999999987 67777 78777 421 0023432222 222 67899 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||... +.+ ++.+...+ ..... ..
T Consensus 114 tG--~~~~~~~~~g~~~--~~~-------------~~~~~~~~---------------------------~~~~~---~~ 146 (315)
T 3r9u_A 114 TG--SAPKKAGFKGEDE--FFG-------------KGVSTCAT---------------------------CDGFF---YK 146 (315)
T ss_dssp CC--EEECCCCCBTTTT--TBT-------------TTEESCHH---------------------------HHGGG---GT
T ss_pred eC--CCCCCCCCCChhh--cCC-------------CeEEeeec---------------------------ccccc---cC
Confidence 99 6788888876321 111 11111110 00000 12
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-------CCC--CeEEcCCceEEcCCc--
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-------FPN--NVVKKPDIAELTPTG-- 316 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-------~~~--~i~~~~~v~~~~~~~-- 316 (1129)
.++++| ||+|.+|+|+|..|++.+.+|+++++.+.+.... ... ++..++.|++++.+.
T Consensus 147 ~~~v~v-----------iG~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~ 215 (315)
T 3r9u_A 147 NKEVAV-----------LGGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMG 215 (315)
T ss_dssp TSEEEE-----------ECCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHHHHHHHCTTEEEECSCEEEEEEEETTE
T ss_pred cCEEEE-----------ECCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHHHHHHhcCCeEEEeCcEEEEEEcCCCc
Confidence 344444 7999999999999999999999999988653210 012 445577788886543
Q ss_pred ---eEEc--CCC--EeecCEEEEcccccccCCCCCC--CCC-eEeecCcccccccccccCCCCCeEEeccccc-c--ccc
Q psy12350 317 ---VRFQ--DGS--YEQVDIILYCTGYTYRYPFLHE--SCG-IKVVNKNVQPLYKHLINIEHPSMCIIGYTYR-Y--PFL 383 (1129)
Q Consensus 317 ---v~~~--dg~--~~~~D~VI~atG~~~~~~~l~~--~~~-~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~-~--~~~ 383 (1129)
|++. +|+ ++++|.||+|+|++++.+++.. ..+ +..+++..+.... .+..+.|++|.+|.... . ...
T Consensus 216 ~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~-~~~t~~~~v~a~GD~~~~~~~~~~ 294 (315)
T 3r9u_A 216 VAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVI 294 (315)
T ss_dssp EEEEEEECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT-TCBCSSTTEEECGGGBTTCCCCHH
T ss_pred EEEEEEEcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCC-CcccCCCCEEEeecccCCchhhhh
Confidence 7776 886 6799999999999999988764 133 5555544333332 22357899999998852 1 223
Q ss_pred ccccceeeehhhccccccc
Q psy12350 384 HESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~~ 402 (1129)
....|++.+|.++...+.+
T Consensus 295 ~A~~~g~~aa~~i~~~l~~ 313 (315)
T 3r9u_A 295 CAAGDGAVAALSAMAYIES 313 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHhhHHHHHHHHHHHHHh
Confidence 3447888888887766543
No 31
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=99.87 E-value=1.5e-22 Score=228.91 Aligned_cols=282 Identities=16% Similarity=0.171 Sum_probs=188.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||+|||+||..|++ .+++|+|||++ +||.|.+.. ....++.+
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~--~gg~~~~~~-------------------------~~~~~~~~- 64 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSAR--YMLKTLVIGET--PGGQLTEAG-------------------------IVDDYLGL- 64 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS--TTGGGGGCC-------------------------EECCSTTS-
T ss_pred ccCEEEECccHHHHHHHHHHHH--CCCcEEEEecc--CCCeecccc-------------------------cccccCCC-
Confidence 4799999999999999999999 56999999997 999998411 01111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
...+..++.+|+.++++++++ .+++ ++|+.++... +.|.+.. .......|| +||+||
T Consensus 65 -------~~~~~~~~~~~~~~~~~~~~v--~~~~-~~v~~i~~~~---~~~~v~~-----~~g~~~~~d-----~lvlAt 121 (323)
T 3f8d_A 65 -------IEIQASDMIKVFNKHIEKYEV--PVLL-DIVEKIENRG---DEFVVKT-----KRKGEFKAD-----SVILGI 121 (323)
T ss_dssp -------TTEEHHHHHHHHHHHHHTTTC--CEEE-SCEEEEEEC-----CEEEEE-----SSSCEEEEE-----EEEECC
T ss_pred -------CCCCHHHHHHHHHHHHHHcCC--EEEE-EEEEEEEecC---CEEEEEE-----CCCCEEEcC-----EEEECc
Confidence 124567899999999999887 6777 8888887631 2333322 122456789 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... +.+ .+.+...+ ..... ...
T Consensus 122 G--~~~~~~~i~g~~~--~~~-------------~~~~~~~~---------------------------~~~~~---~~~ 154 (323)
T 3f8d_A 122 G--VKRRKLGVPGEQE--FAG-------------RGISYCSV---------------------------ADAPL---FKN 154 (323)
T ss_dssp C--CEECCCCCTTTTT--TBT-------------TTEESCHH---------------------------HHGGG---GTT
T ss_pred C--CCCccCCCCchhh--hcC-------------CceEEecc---------------------------CCHhH---cCC
Confidence 9 6688888876321 111 11111000 01111 123
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCC--eEEcCCceEEcCC----
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNN--VVKKPDIAELTPT---- 315 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~--i~~~~~v~~~~~~---- 315 (1129)
++++| ||+|.+|+|+|..|++.+.+|+++++.+.+... ..... +..+..|++++++
T Consensus 155 ~~v~v-----------vG~G~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~~ 223 (323)
T 3f8d_A 155 RVVAV-----------IGGGDSALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKVVK 223 (323)
T ss_dssp CEEEE-----------ECCSHHHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSEE
T ss_pred CEEEE-----------ECCCHHHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCEEEEEeccCcee
Confidence 44444 799999999999999999999999998876541 01113 4445568888755
Q ss_pred ceEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc---c--cccc
Q psy12350 316 GVRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY---P--FLHE 385 (1129)
Q Consensus 316 ~v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~---~--~~~~ 385 (1129)
+|.+.| |+ ++++|.||+|+|++++.++++ ..++..+++..+....+ +..+.|++|++|..... | ....
T Consensus 224 ~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~-~~g~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~~~A 301 (323)
T 3f8d_A 224 QVVVENLKTGEIKELNVNGVFIEIGFDPPTDFAK-SNGIETDTNGYIKVDEW-MRTSVPGVFAAGDCTSAWLGFRQVITA 301 (323)
T ss_dssp EEEEEETTTCCEEEEECSEEEECCCEECCHHHHH-HTTCCBCTTSSBCCCTT-CBCSSTTEEECSTTBSTTTTCCCHHHH
T ss_pred EEEEEECCCCceEEEEcCEEEEEECCCCChhHHh-hcCeeecCCCcEecCCC-ceecCCCEEEcceecCCCCcccceeeh
Confidence 377876 77 679999999999999988876 34455555443332222 22578999999987653 1 2333
Q ss_pred ccceeeehhhcccccccc
Q psy12350 386 SCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 386 ~~~~~~~a~~~~~~~~~~ 403 (1129)
..||+.+|.++...+.++
T Consensus 302 ~~~g~~aa~~i~~~l~~~ 319 (323)
T 3f8d_A 302 VAQGAVAATSAYRYVTEK 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHh
Confidence 478888888877665443
No 32
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=99.87 E-value=1.7e-22 Score=227.44 Aligned_cols=283 Identities=12% Similarity=0.189 Sum_probs=170.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
+.+||+|||||||||+||.+|++ .|++|+|||+. ..||.|.+ || ++. ...+..++.|
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~--~g~~v~liE~~-~~gg~~~~----G~----------~~~------~~~i~~~~g~ 59 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGR--SSLKPVMYEGF-MAGGVAAG----GQ----------LTT------TTIIENFPGF 59 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCS-SGGGCCTT----CG----------GGG------SSEECCSTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecC-CCCCcccC----CC----------cCC------hHHhhhccCC
Confidence 45899999999999999999999 66999999995 56777652 21 111 0111223222
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
| ...+..++.+++..++++++. .+..+ .|..+.. ......+. ......+.|| +||+|
T Consensus 60 ~-------~~i~~~~l~~~~~~~~~~~~~--~~~~~-~v~~~~~-----~~~~~~~~---~~~~~~~~~~-----~liiA 116 (314)
T 4a5l_A 60 P-------NGIDGNELMMNMRTQSEKYGT--TIITE-TIDHVDF-----STQPFKLF---TEEGKEVLTK-----SVIIA 116 (314)
T ss_dssp T-------TCEEHHHHHHHHHHHHHHTTC--EEECC-CEEEEEC-----SSSSEEEE---ETTCCEEEEE-----EEEEC
T ss_pred c-------ccCCHHHHHHHHHHHHhhcCc--EEEEe-EEEEeec-----CCCceEEE---ECCCeEEEEe-----EEEEc
Confidence 2 234667888999998888875 44433 3433332 11111121 1233456788 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|+.|++||.......+ ..... ..........
T Consensus 117 TG--~~~~~~~ipG~~~~~~~~---------------~~~~~----------------------------~~~~~~~~~~ 151 (314)
T 4a5l_A 117 TG--ATAKRMHVPGEDKYWQNG---------------VSACA----------------------------ICDGAVPIFR 151 (314)
T ss_dssp CC--EEECCCCCTTHHHHBTTT---------------EESCH----------------------------HHHTTSGGGT
T ss_pred cc--ccccccCCCccccccccc---------------eeeeh----------------------------hhhhhhhhcC
Confidence 99 789999998843211111 00000 0000111112
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC-------CCC--eEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF-------PNN--VVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~-------~~~--i~~~~~v~~~~~~--- 315 (1129)
.++++| ||||++|+|+|..|++.|.+||+++|......... ... ......+.++.+.
T Consensus 152 ~~~vvV-----------iGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 220 (314)
T 4a5l_A 152 NKVLMV-----------VGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGDGDL 220 (314)
T ss_dssp TSEEEE-----------ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSS
T ss_pred CCeEEE-----------ECCChHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhcccceeeEeeeeeEEEEeeeec
Confidence 344444 79999999999999999999999998775432210 111 1122233334321
Q ss_pred --ceEE-----cCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcc-cccccccccCCCCCeEEecccccccc---cc
Q psy12350 316 --GVRF-----QDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNV-QPLYKHLINIEHPSMCIIGYTYRYPF---LH 384 (1129)
Q Consensus 316 --~v~~-----~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~-~~l~~~~~~~~~p~l~~~G~~~~~~~---~~ 384 (1129)
++.+ .+++++++|.||+|+|.+|+..+|... +..+++.. ++-+ +-++.|++|.+|.....|. ..
T Consensus 221 ~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~~--~~~~~~G~iv~~~---~~Ts~pgIyA~GDv~~~~~~~~~~ 295 (314)
T 4a5l_A 221 LNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGGQ--VKTADDGYILTEG---PKTSVDGVFACGDVCDRVYRQAIV 295 (314)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTTS--SCBCTTSCBCCBT---TBCSSTTEEECSTTTCSSCCCHHH
T ss_pred cceeEEeecccccceeeccccceEecccccChhHhccc--ceEcCCeeEeCCC---CccCCCCEEEEEeccCCcchHHHH
Confidence 2333 245578999999999999999998743 44444443 2222 2368999999999764432 12
Q ss_pred cccceeeehhhcc
Q psy12350 385 ESCGIKVVNKNVQ 397 (1129)
Q Consensus 385 ~~~~~~~~a~~~~ 397 (1129)
+..|++.+|.++.
T Consensus 296 A~~~G~~AA~~~~ 308 (314)
T 4a5l_A 296 AAGSGCMAALSCE 308 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 2256655555544
No 33
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=99.87 E-value=3.2e-23 Score=253.10 Aligned_cols=286 Identities=16% Similarity=0.188 Sum_probs=183.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+|||+||.+|++.+++++|+|||+++.++... . .++..+ .+
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~-----------------~-------~l~~~~---~~--- 51 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFAN-----------------C-------GLPYHI---SG--- 51 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCG-----------------G-------GHHHHH---TS---
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccc-----------------c-------CchHHh---cC---
Confidence 58999999999999999999976789999999988654100 0 000000 00
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
........+.++++.+++++++ .++++++|+.+++ +...+.+.+...+......|| +||+|||
T Consensus 52 -----~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~V~~id~-----~~~~v~~~~~~~g~~~~~~~d-----~lviAtG 114 (565)
T 3ntd_A 52 -----EIAQRSALVLQTPESFKARFNV--EVRVKHEVVAIDR-----AAKLVTVRRLLDGSEYQESYD-----TLLLSPG 114 (565)
T ss_dssp -----SSCCGGGGBCCCHHHHHHHHCC--EEETTEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEECCC
T ss_pred -----CcCChHHhhccCHHHHHHhcCc--EEEECCEEEEEEC-----CCCEEEEEecCCCCeEEEECC-----EEEECCC
Confidence 0011222344556677777877 7889999999986 445566655444444567899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||.....+ +.... +.......+.+.....+
T Consensus 115 --~~p~~p~ipG~~~~~v------------------~~~~~----------------------~~~~~~l~~~~~~~~~~ 152 (565)
T 3ntd_A 115 --AAPIVPPIPGVDNPLT------------------HSLRN----------------------IPDMDRILQTIQMNNVE 152 (565)
T ss_dssp --EEECCCCCTTCCSTTE------------------ECCSS----------------------HHHHHHHHHHHHHTTCS
T ss_pred --CCCCCCCCCCCCCCCE------------------EEeCC----------------------HHHHHHHHHHHhhCCCC
Confidence 7888888887321110 00000 00000000000001123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEcC-
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELTP- 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~~- 314 (1129)
+++| ||||++|+|+|..|++.|.+|++++|.+.+++...+ -++.....|+++++
T Consensus 153 ~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~ 221 (565)
T 3ntd_A 153 HATV-----------VGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQ 221 (565)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEE
T ss_pred EEEE-----------ECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecc
Confidence 4444 799999999999999999999999999877663221 14566778888864
Q ss_pred -------------------C---ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeE
Q psy12350 315 -------------------T---GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 315 -------------------~---~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
+ .++++||+++++|.||+|||++++.++++ ..++.++++..+....+ +.+++|++|
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-~~g~~~~~~g~i~vd~~-~~t~~~~Iy 299 (565)
T 3ntd_A 222 VQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLAR-DAGLAIGELGGIKVNAM-MQTSDPAIY 299 (565)
T ss_dssp CCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHH-HHTCCBCTTSSBCCCTT-CBCSSTTEE
T ss_pred ccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHH-hCCcccCCCCCEEECCC-cccCCCCEE
Confidence 2 26778999999999999999999988764 34455555443333222 225789999
Q ss_pred Eecccccc-----------cc-cccccceeeehhhcc
Q psy12350 373 IIGYTYRY-----------PF-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 373 ~~G~~~~~-----------~~-~~~~~~~~~~a~~~~ 397 (1129)
++|..... ++ ..+..||+.+|.++.
T Consensus 300 A~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 336 (565)
T 3ntd_A 300 AVGDAVEEQDFVTGQACLVPLAGPANRQGRMAADNMF 336 (565)
T ss_dssp ECGGGBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred EeeeeEeeccccCCceeecccHHHHHHHHHHHHHHhc
Confidence 99987521 11 112366666666665
No 34
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=99.87 E-value=2.7e-22 Score=231.48 Aligned_cols=291 Identities=14% Similarity=0.220 Sum_probs=177.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCCCCC--------CCCCCCCcc----ccccCcc---
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHIG--------CDQYGLPVH----SSMYKSL--- 803 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~~~g--------~~~~g~p~~----~~~y~~~--- 803 (1129)
.+++|||+|++|+++|..|.+.| . +|+|||+++ +||+|....... ...+|++.. ...+..+
T Consensus 5 ~~vvIIGaG~aGl~aA~~l~~~g--~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 81 (369)
T 3d1c_A 5 HKVAIIGAGAAGIGMAITLKDFG--ITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTFN 81 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHHC
T ss_pred CcEEEECcCHHHHHHHHHHHHcC--CCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhcccccccccccc
Confidence 46899999999999999999999 8 999999988 999997421100 000111000 0000000
Q ss_pred ccccc-ccc----ccc---cCCCC--CC-------C---C-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEee
Q psy12350 804 KTNLP-KDL----MEL---CGYGH--KG-------N---A-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHS 858 (1129)
Q Consensus 804 ~~~~~-~~~----~~~---~~~~~--~~-------~---~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs 858 (1129)
..... ..+ ..+ .+..+ .. . + ...+.....|+.+|+.+. |.+|+ +.++|+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~-p~ip~-----~~~~~~ 155 (369)
T 3d1c_A 82 EEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNF-PKKPF-----KYGIHY 155 (369)
T ss_dssp CSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCSTTS-BCCCS-----SSCEEG
T ss_pred ccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCCCc-cCCCC-----Cceech
Confidence 00000 000 000 00000 00 0 0 001111122333777665 66666 467899
Q ss_pred ccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCC-CCC
Q psy12350 859 RDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCL-PNN 935 (1129)
Q Consensus 859 ~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 935 (1129)
..+.+...+.+|+|+|||+|.+|+|+|..|++.+.+|+++.+.+..+. +.+... +.......+...+ ..+
T Consensus 156 ~~~~~~~~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~-------~~~~~~~~l~~~l~~~g 228 (369)
T 3d1c_A 156 SEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVR-------LSPYTRQRLGNVIKQGA 228 (369)
T ss_dssp GGCSCGGGSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTS-------CCHHHHHHHHHHHHTTC
T ss_pred hhcCChhhcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCcc-------CCHHHHHHHHHHHhhCC
Confidence 999887778899999999999999999999999999999988654432 111000 0000000011111 123
Q ss_pred -eEEcCC--eeEE--eCCc--EEecCCcEee-ccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEE
Q psy12350 936 -VVLKPD--VAEL--TPTG--VRFQDGSYEQ-VDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFIL 1007 (1129)
Q Consensus 936 -V~~~~~--i~~v--~~~~--V~~~dG~~~~-~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~i 1007 (1129)
|++..+ |.++ ++++ |++.||+++. +|.||+|||++++++++.+ .++. ++++...++.+...+++||||++
T Consensus 229 ~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~~~~~-~~~~-~~~g~i~v~~~~~~t~~~~v~a~ 306 (369)
T 3d1c_A 229 RIEMNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQ-QLFV-TTNQDIKLTTHDESTRYPNIFMI 306 (369)
T ss_dssp CEEEECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGSHHHH-HHSC-CTTSCCCBCTTSBBSSSTTEEEC
T ss_pred cEEEecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccchhhh-hhcc-CCCCCEEechhhcccCCCCeEEe
Confidence 777654 8888 4443 7788998775 6999999999999866653 2233 33443345555567899999999
Q ss_pred cccccc-----chhHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q psy12350 1008 GVPRHT-----LLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQ 1048 (1129)
Q Consensus 1008 G~~~~~-----~~~~~~e~qa~~~a~~l~g~~~lp~~~~~~~~~~~ 1048 (1129)
|++... ..+..++.||+++|++|.|+..+|+.++|.+.|..
T Consensus 307 GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~~p~~~~~~~~~~~ 352 (369)
T 3d1c_A 307 GATVENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQK 352 (369)
T ss_dssp STTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred ccccccCCeeEEEEehhhHHHHHHHHHHhcccCCCCcchHHHHHHh
Confidence 998643 23457889999999999999999998777666554
No 35
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=99.87 E-value=6.7e-23 Score=244.41 Aligned_cols=299 Identities=15% Similarity=0.123 Sum_probs=183.2
Q ss_pred CCcceEEEEcCChHHHHHHHHhhc-CCCCceEEEEc--------ccCCcCceEecCCCCCCCCCCCCccCcccccccccC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFE--------QTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNL 77 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E--------~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~ 77 (1129)
...+||+||||||||++||..|++ .| ++|+|+| +.+.+||+|.+ .+|. |.+...+.. ..
T Consensus 5 ~~~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~~~~---~gci----P~k~l~~~a---~~ 72 (495)
T 2wpf_A 5 SKAFDLVVIGAGSGGLEAGWNAATLYG--KRVAVVDVQTSHGPPFYAALGGTCVN---VGCV----PKKLMVTGA---QY 72 (495)
T ss_dssp CEEEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBCBTTHHHHH---HSHH----HHHHHHHHH---HH
T ss_pred ccccCEEEECCChhHHHHHHHHHHhcC--CeEEEEecccccccccCCCCCCeeec---CCcc----hHHHHHHHH---HH
Confidence 345899999999999999999998 65 8999999 45789999984 2221 111111100 00
Q ss_pred CccccccCCCCCCCCCCCC--CCCHHHHHHHHHHHHHhc------------CCcceeEeceeeeeeccccccCCCCceEE
Q psy12350 78 PKEIMELSGYHHKGHPDKS--YIAANDVLEYLNDFADNF------------NLRNLCLVNKNVQPLYKHLINIEHPSMCI 143 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~~--~~~~~~~~~yl~~~~~~~------------~~~~~i~~~~~V~~v~~~~~~~~~~~~~~ 143 (1129)
...+..+.+|.++.. .. ..+..++.++.+++.+++ ++ .++.++ ++.++ .+.+.+
T Consensus 73 ~~~~~~~~~~g~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g~-~~~i~-------~~~v~v 140 (495)
T 2wpf_A 73 MDHLRESAGFGWEFD--GSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGL--DFFLGW-GSLES-------KNVVVV 140 (495)
T ss_dssp HHHHHHHHTTTEECC--GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTE--EEEESE-EEEEE-------TTEEEE
T ss_pred HHHHhHHHhcCcccC--CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCe--EEEEeE-EEEee-------CCEEEE
Confidence 011112222322110 01 235566666665554432 33 444443 33332 345555
Q ss_pred ecccc---CccceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccC
Q psy12350 144 IGIPR---DTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRD 220 (1129)
Q Consensus 144 ~~~~~---~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (1129)
.+... .....+.|| +|||||| +.|..|++||.. .+ ..+..+
T Consensus 141 ~~~~~~~~~~~~~~~~d-----~lViATG--s~p~~p~i~G~~--~~-----------------~~~~~~---------- 184 (495)
T 2wpf_A 141 RETADPKSAVKERLQAD-----HILLATG--SWPQMPAIPGIE--HC-----------------ISSNEA---------- 184 (495)
T ss_dssp ESSSSTTSCEEEEEEEE-----EEEECCC--EEECCCCCTTGG--GC-----------------EEHHHH----------
T ss_pred eecCCccCCCCeEEEcC-----EEEEeCC--CCcCCCCCCCcc--cc-----------------ccHHHH----------
Confidence 42111 003457899 9999999 788888887631 00 000000
Q ss_pred CCCCCccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc---ccEEEEccccCCcccc
Q psy12350 221 ESPVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE---ATTVFLSHHSEHVKKL 297 (1129)
Q Consensus 221 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~---~~~V~lv~r~~~~~~~ 297 (1129)
..... ..++++| ||+|++|+|+|..|++. |.+||+++|.+.+++.
T Consensus 185 -----------------~~~~~----~~~~vvV-----------iGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~ 232 (495)
T 2wpf_A 185 -----------------FYLPE----PPRRVLT-----------VGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRG 232 (495)
T ss_dssp -----------------TTCSS----CCSEEEE-----------ECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTT
T ss_pred -----------------Hhhhh----cCCeEEE-----------ECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccc
Confidence 00000 1233333 89999999999999999 9999999999887654
Q ss_pred cCC--------------CCeEEcCCceEEcCC-----ceEEcCCCEeecCEEEEcccccccCCCC-CCCCCeEeecCccc
Q psy12350 298 RFP--------------NNVVKKPDIAELTPT-----GVRFQDGSYEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQ 357 (1129)
Q Consensus 298 ~~~--------------~~i~~~~~v~~~~~~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~ 357 (1129)
..+ -++..+..|++++++ .|.++||+++++|.||+|+|++++.++| -+..++.++++..+
T Consensus 233 ~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i 312 (495)
T 2wpf_A 233 FDETIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGV 312 (495)
T ss_dssp SCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSB
T ss_pred cCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCE
Confidence 222 156668888888643 3778899999999999999999999865 23456666654433
Q ss_pred ccccccccCCCCCeEEecccccc-cc-cccccceeeehhhccc
Q psy12350 358 PLYKHLINIEHPSMCIIGYTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 358 ~l~~~~~~~~~p~l~~~G~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
....++ -+++|++|++|..... ++ .....|++.+|.++.+
T Consensus 313 ~Vd~~~-~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 354 (495)
T 2wpf_A 313 QVDEFS-RTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFG 354 (495)
T ss_dssp CCCTTC-BCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHS
T ss_pred EECCCC-ccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcC
Confidence 332222 2578999999987542 22 1223788888887764
No 36
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=99.87 E-value=6.3e-22 Score=223.43 Aligned_cols=281 Identities=14% Similarity=0.177 Sum_probs=185.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+||||||||++||..|++ .+++|+|||+ ..+||.|.+... ...++.++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~-~~~gg~~~~~~~-------------------------~~~~~~~~ 56 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAAR--ANLQPVLITG-MEKGGQLTTTTE-------------------------VENWPGDP 56 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCCEEECC-SSTTGGGGGCSB-------------------------CCCSTTCC
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEcc-CCCCceEecchh-------------------------hhhCCCCC
Confidence 5799999999999999999999 5699999997 578998874110 01111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
......++.+++..+++++++ .+++++ |+.++.. .+.|.+ . .+ .....|| +||+||
T Consensus 57 -------~~~~~~~~~~~~~~~~~~~~~--~~~~~~-v~~i~~~---~~~~~v-~---~~--~~~~~~~-----~lv~At 112 (320)
T 1trb_A 57 -------NDLTGPLLMERMHEHATKFET--EIIFDH-INKVDLQ---NRPFRL-N---GD--NGEYTCD-----ALIIAT 112 (320)
T ss_dssp -------SSCBHHHHHHHHHHHHHHTTC--EEECCC-EEEEECS---SSSEEE-E---ES--SCEEEEE-----EEEECC
T ss_pred -------CCCCHHHHHHHHHHHHHHCCC--EEEEee-eeEEEec---CCEEEE-E---eC--CCEEEcC-----EEEECC
Confidence 123567889999999998877 677776 8777652 123333 1 11 2356788 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... +.+. +.+... .....+ ...
T Consensus 113 G--~~~~~~~~~g~~~--~~~~-------------~~~~~~----------------------------~~~~~~--~~~ 145 (320)
T 1trb_A 113 G--ASARYLGLPSEEA--FKGR-------------GVSACA----------------------------TSDGFF--YRN 145 (320)
T ss_dssp C--EEECCCCCHHHHH--TBTT-------------TEESCH----------------------------HHHGGG--GTT
T ss_pred C--CCcCCCCCCChHH--hCCc-------------eeEecc----------------------------cCCccc--cCC
Confidence 9 6678888876321 1110 011100 000001 123
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc------------CCCCeEEcCCceEEcCCc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR------------FPNNVVKKPDIAELTPTG 316 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~------------~~~~i~~~~~v~~~~~~~ 316 (1129)
++++| ||+|.+|+|+|..|++.+.+|++++|.+.+.... ..-++..++.|+++++++
T Consensus 146 ~~v~V-----------iG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~ 214 (320)
T 1trb_A 146 QKVAV-----------IGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQ 214 (320)
T ss_dssp SEEEE-----------ECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECS
T ss_pred CeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCC
Confidence 44444 7999999999999999999999999987653210 111345567788886543
Q ss_pred -----eEEcC----C--CEeecCEEEEcccccccCCCCCCCCCeEeecCccccccccc----ccCCCCCeEEeccccccc
Q psy12350 317 -----VRFQD----G--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHL----INIEHPSMCIIGYTYRYP 381 (1129)
Q Consensus 317 -----v~~~d----g--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~----~~~~~p~l~~~G~~~~~~ 381 (1129)
|.+++ | +++++|.||+|+|++++.++++. ++..+ +..+....++ ..++.|++|++|.....+
T Consensus 215 ~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~~~~--~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~ 291 (320)
T 1trb_A 215 MGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEG--QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHI 291 (320)
T ss_dssp SSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGGGTT--TSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSS
T ss_pred CceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHHhcc--ccccc-CceEEECCCcccccccCCCCCEEEcccccCCc
Confidence 77875 5 46799999999999999998873 34444 4433333332 346789999999886532
Q ss_pred ---ccccccceeeehhhccccccc
Q psy12350 382 ---FLHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 382 ---~~~~~~~~~~~a~~~~~~~~~ 402 (1129)
......|++.+|.++...+.+
T Consensus 292 ~~~~~~A~~~g~~aa~~i~~~l~~ 315 (320)
T 1trb_A 292 YRQAITSAGTGCMAALDAERYLDG 315 (320)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred chhhhhhhccHHHHHHHHHHHHHh
Confidence 223347777777777665544
No 37
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=99.87 E-value=1e-22 Score=241.68 Aligned_cols=293 Identities=13% Similarity=0.144 Sum_probs=177.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||+.|++ .|++|+|+||++.+||+|.+ .+|. |.+...+.. ........++.+
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~--~G~~V~liEk~~~~GG~~~~---~gci----Psk~l~~~a---~~~~~~~~~~~~- 70 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAK--AKYNVLMADPKGELGGNCLY---SGCV----PSKTVREVI---QTAWRLTNIANV- 70 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECTTSSSSHHHHH---HSHH----HHHHHHHHH---HHHHHHHHHHCS-
T ss_pred cceEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCCcccc---cCCC----chHHHHHHH---HHHHHHHhcccC-
Confidence 4899999999999999999999 66999999998999999985 2221 111111100 000001111111
Q ss_pred CCCCCCCCCCCHHHHHHHHH------------HHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYLN------------DFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~------------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
...+....+..+.+ ...++.++ .+..+ +|..++. ..+.+.. .++......|
T Consensus 71 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~g-~v~~id~-------~~~~V~~-~~g~~~~~~~ 133 (466)
T 3l8k_A 71 ------KIPLDFSTVQDRKDYVQELRFKQHKRNMSQYETL--TFYKG-YVKIKDP-------THVIVKT-DEGKEIEAET 133 (466)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHHHHHHHHHHTTCTTE--EEESE-EEEEEET-------TEEEEEE-TTSCEEEEEE
T ss_pred ------CCCcCHHHHHHHHHhheeccccchHHHHHHhCCC--EEEEe-EEEEecC-------CeEEEEc-CCCcEEEEec
Confidence 01223344443332 22233332 34433 4555543 2233322 1221222789
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +||+||| +.|..|++||.. .+ ..+..+
T Consensus 134 d-----~lviAtG--~~p~~p~i~G~~--~~-----------------~t~~~~-------------------------- 161 (466)
T 3l8k_A 134 R-----YMIIASG--AETAKLRLPGVE--YC-----------------LTSDDI-------------------------- 161 (466)
T ss_dssp E-----EEEECCC--EEECCCCCTTGG--GS-----------------BCHHHH--------------------------
T ss_pred C-----EEEECCC--CCccCCCCCCcc--ce-----------------EeHHHH--------------------------
Confidence 9 9999999 788888887732 00 000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-CC-----------CCeE
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-FP-----------NNVV 304 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-~~-----------~~i~ 304 (1129)
......+. ...++++| ||||++|+|+|..|++.|.+|+++++.+.+++.. .+ -++.
T Consensus 162 ~~~~~~l~-~~~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~v~i~ 229 (466)
T 3l8k_A 162 FGYKTSFR-KLPQDMVI-----------IGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLNIK 229 (466)
T ss_dssp HSTTCSCC-SCCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHCCCEE
T ss_pred HHHHHHHh-hCCCeEEE-----------ECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCEEEEE
Confidence 00000111 01233333 8999999999999999999999999998877644 22 1455
Q ss_pred EcCCceEEcC---Cc--eEEc--CCC--EeecCEEEEcccccccCCC-CCCCCCeEeecCcccccccccccCCCCCeEEe
Q psy12350 305 KKPDIAELTP---TG--VRFQ--DGS--YEQVDIILYCTGYTYRYPF-LHESCGIKVVNKNVQPLYKHLINIEHPSMCII 374 (1129)
Q Consensus 305 ~~~~v~~~~~---~~--v~~~--dg~--~~~~D~VI~atG~~~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~ 374 (1129)
.+..|+++++ ++ |.++ ||+ ++++|.||+|+|++++.++ +. ..++.++++. +....++ ..+.|++|++
T Consensus 230 ~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~-~~gl~~~~~G-i~vd~~~-~t~~~~Iya~ 306 (466)
T 3l8k_A 230 FNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAR-EIGLSISKTG-IVVDETM-KTNIPNVFAT 306 (466)
T ss_dssp CSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCCTTTG-GGTCCBCSSS-BCCCTTC-BCSSTTEEEC
T ss_pred ECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccccchh-hcCceeCCCC-EeECCCc-cCCCCCEEEE
Confidence 6778888865 33 6677 676 7899999999999999883 33 4566666555 4333322 2578999999
Q ss_pred cccccc-cc-cccccceeeehhhccc
Q psy12350 375 GYTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 375 G~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
|..... ++ .....|++.+|.++.+
T Consensus 307 GD~~~~~~~~~~A~~~g~~aa~~i~~ 332 (466)
T 3l8k_A 307 GDANGLAPYYHAAVRMSIAAANNIMA 332 (466)
T ss_dssp GGGTCSCCSHHHHHHHHHHHHHHHHT
T ss_pred EecCCCCccHhHHHHHHHHHHHHHhC
Confidence 987542 22 2233888888888764
No 38
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=99.86 E-value=7.2e-22 Score=222.01 Aligned_cols=282 Identities=15% Similarity=0.211 Sum_probs=184.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
++|+||||||||++||..|++ .++ +|+|||+ +.+||.|.+... ...++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~--~g~~~v~lie~-~~~gg~~~~~~~-------------------------~~~~~~~~ 53 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATR--GGVKNAVLFEK-GMPGGQITGSSE-------------------------IENYPGVK 53 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCSSEEEECS-SSTTCGGGGCSC-------------------------BCCSTTCC
T ss_pred ceEEEECccHHHHHHHHHHHH--CCCCcEEEEcC-CCCCcccccccc-------------------------cccCCCCc
Confidence 689999999999999999999 568 9999999 578998874110 01111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
...+..++.+++.++++++++ .+++ ++|+.++... +.|.+.. .+ .....|| +||+||
T Consensus 54 -------~~~~~~~~~~~l~~~~~~~~v--~~~~-~~v~~i~~~~---~~~~v~~---~~--g~~~~~~-----~vv~At 110 (311)
T 2q0l_A 54 -------EVVSGLDFMQPWQEQCFRFGL--KHEM-TAVQRVSKKD---SHFVILA---ED--GKTFEAK-----SVIIAT 110 (311)
T ss_dssp -------SCBCHHHHHHHHHHHHHTTSC--EEEC-SCEEEEEEET---TEEEEEE---TT--SCEEEEE-----EEEECC
T ss_pred -------ccCCHHHHHHHHHHHHHHcCC--EEEE-EEEEEEEEcC---CEEEEEE---cC--CCEEECC-----EEEECC
Confidence 234677899999999988876 6666 7888887521 2233322 11 2356788 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... +.+. +.+...+ .+.. ....
T Consensus 111 G--~~~~~~~~~g~~~--~~~~-------------~~~~~~~-----------------------------~~~~-~~~~ 143 (311)
T 2q0l_A 111 G--GSPKRTGIKGESE--YWGK-------------GVSTCAT-----------------------------CDGF-FYKN 143 (311)
T ss_dssp C--EEECCCCCBTHHH--HBTT-------------TEESCHH-----------------------------HHGG-GGTT
T ss_pred C--CCCCCCCCCChhh--ccCC-------------cEEEeec-----------------------------CChh-hcCC
Confidence 9 6778888876321 1110 0111000 0000 0123
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCCe--EEcCCceEEcCC----
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNNV--VKKPDIAELTPT---- 315 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~i--~~~~~v~~~~~~---- 315 (1129)
++++| ||+|.+|+|+|..|++.+.+|++++|++.+... .....| ..+..|++++++
T Consensus 144 ~~v~V-----------vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v 212 (311)
T 2q0l_A 144 KEVAV-----------LGGGDTAVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASGV 212 (311)
T ss_dssp SEEEE-----------ECCSHHHHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEETTEEEEEEEEETTEE
T ss_pred CEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhhCCCeEEEeCCEEEEEECCCCcE
Confidence 44444 799999999999999999999999998765311 011234 345568888644
Q ss_pred -ceEEc---CCC--EeecCEEEEcccccccCCCCCCCC---CeEeecCcccccccccccCCCCCeEEecccccc-c--cc
Q psy12350 316 -GVRFQ---DGS--YEQVDIILYCTGYTYRYPFLHESC---GIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-P--FL 383 (1129)
Q Consensus 316 -~v~~~---dg~--~~~~D~VI~atG~~~~~~~l~~~~---~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-~--~~ 383 (1129)
+|.++ +|+ ++++|.||+|+|++++.++++... ++..+++..+....+ +.++.|++|++|..... | ..
T Consensus 213 ~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~ 291 (311)
T 2q0l_A 213 SSLSIKNTATNEKRELVVPGFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFS-MKTNVQGLFAAGDIRIFAPKQVV 291 (311)
T ss_dssp EEEEEEETTTCCEEEEECSEEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHH
T ss_pred eEEEEEecCCCceEEEecCEEEEEecCccChhhhhcccccceeEeccCCCEEeCCc-cccCCCCeEEcccccCcchHHHH
Confidence 46776 676 679999999999999999987431 255554443333332 23578999999988542 1 12
Q ss_pred ccccceeeehhhcccccc
Q psy12350 384 HESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 384 ~~~~~~~~~a~~~~~~~~ 401 (1129)
....|++.+|.++...+.
T Consensus 292 ~A~~~g~~aa~~i~~~l~ 309 (311)
T 2q0l_A 292 CAASDGATAALSVISYLE 309 (311)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHh
Confidence 233778888877765543
No 39
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=99.86 E-value=1.5e-22 Score=239.34 Aligned_cols=262 Identities=14% Similarity=0.205 Sum_probs=163.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+++|+|||||+|||+||..|++.+.+++|+|||+++.+++... .++.....
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~------------------------~~p~~~~~----- 53 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPC------------------------GIPYVVEG----- 53 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-----------------------------------------
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCc------------------------CCccccCC-----
Confidence 3799999999999999999999766899999999886543221 00100000
Q ss_pred CCCCCCCCCCCHHHHHHHH-HHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 89 HKGHPDKSYIAANDVLEYL-NDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl-~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
....+++..+. +.+++++++ .++++++|+.++.. .+.+ .. .+......|| +||+|
T Consensus 54 --------~~~~~~~~~~~~~~~~~~~gi--~v~~~~~v~~i~~~-----~~~v--~~--~~g~~~~~~d-----~lviA 109 (449)
T 3kd9_A 54 --------LSTPDKLMYYPPEVFIKKRGI--DLHLNAEVIEVDTG-----YVRV--RE--NGGEKSYEWD-----YLVFA 109 (449)
T ss_dssp --------------------CTHHHHTTC--EEETTCEEEEECSS-----EEEE--EC--SSSEEEEECS-----EEEEC
T ss_pred --------CCCHHHhhhcCHHHHHHhcCc--EEEecCEEEEEecC-----CCEE--EE--CCceEEEEcC-----EEEEC
Confidence 01112223322 334466777 88999999988752 2322 21 2222357799 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||.... +. ..... .+.+....+.+..+.
T Consensus 110 tG--~~p~~p~i~G~~~~---~v---------------~~~~~----------------------~~~~~~~~~~~~~~~ 147 (449)
T 3kd9_A 110 NG--ASPQVPAIEGVNLK---GV---------------FTADL----------------------PPDALAIREYMEKYK 147 (449)
T ss_dssp CC--EEECCCSCBTTTST---TE---------------ECSCS----------------------THHHHHHHHHHSSSC
T ss_pred CC--CCCCCCCCCCCCCC---CE---------------EEeCC----------------------HHHHHHHHHHHHhcC
Confidence 99 78888888773211 10 00000 000000000010112
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELT 313 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~ 313 (1129)
.++++| ||+|++|+|+|..|++.|.+|++++|.+.+++..++ -++..+..|.+++
T Consensus 148 ~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~v~i~~~~~v~~i~ 216 (449)
T 3kd9_A 148 VENVVI-----------IGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKHVNLRLQEITMKIE 216 (449)
T ss_dssp CCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTTSEEEESCCEEEEE
T ss_pred CCeEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCcEEEeCCeEEEEe
Confidence 344444 799999999999999999999999999887654111 1345577888887
Q ss_pred CCc---eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 314 PTG---VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 314 ~~~---v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
+++ .++.+|+++++|.||+|+|++++.++++ ..++.++++..+....+ +.++.|++|.+|...
T Consensus 217 ~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~-~~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~ 282 (449)
T 3kd9_A 217 GEERVEKVVTDAGEYKAELVILATGIKPNIELAK-QLGVRIGETGAIWTNEK-MQTSVENVYAAGDVA 282 (449)
T ss_dssp CSSSCCEEEETTEEEECSEEEECSCEEECCHHHH-HTTCCBCTTSSBCCCTT-CBCSSTTEEECSTTB
T ss_pred ccCcEEEEEeCCCEEECCEEEEeeCCccCHHHHH-hCCccCCCCCCEEECCC-CccCCCCEEEeeeee
Confidence 653 4577888899999999999999988775 35566665443332222 225789999999874
No 40
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=99.86 E-value=5.3e-22 Score=222.99 Aligned_cols=283 Identities=12% Similarity=0.129 Sum_probs=184.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+||||||||++||..|++ .+++|+|+|+ .+||.|.... . +..+.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~li~~--~~gG~~~~~~--------------~-----------~~~~~---- 48 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGE--RFGGQILDTV--------------D-----------IENYI---- 48 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHT--TTCCEEEECS--STTGGGGGCC--------------E-----------ECCBT----
T ss_pred CCEEEECcCHHHHHHHHHHHH--CCCcEEEEeC--CCCceecccc--------------c-----------ccccc----
Confidence 689999999999999999999 5689999986 4799987310 0 00111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
...+....++.++++++++++++ .++++++|+.++........|.+... . .....|| +||+|||
T Consensus 49 ----~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~~~~~~~~~~v~~~---~--g~~~~~~-----~lv~AtG 112 (310)
T 1fl2_A 49 ----SVPKTEGQKLAGALKVHVDEYDV--DVIDSQSASKLIPAAVEGGLHQIETA---S--GAVLKAR-----SIIVATG 112 (310)
T ss_dssp ----TBSSEEHHHHHHHHHHHHHTSCE--EEECSCCEEEEECCSSTTCCEEEEET---T--SCEEEEE-----EEEECCC
T ss_pred ----CcCCCCHHHHHHHHHHHHHHcCC--eEEccCEEEEEEecccCCceEEEEEC---C--CCEEEeC-----EEEECcC
Confidence 11134567899999999998876 78899999988653111123444321 1 2356788 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||... +.++ +.+...+ ... . ....+
T Consensus 113 --~~~~~~~~~g~~~--~~~~-------------~~~~~~~---------------------------~~~-~--~~~~~ 145 (310)
T 1fl2_A 113 --AKWRNMNVPGEDQ--YRTK-------------GVTYCPH---------------------------CDG-P--LFKGK 145 (310)
T ss_dssp --EEECCCCCTTTTT--TBTT-------------TEESCHH---------------------------HHG-G--GGBTC
T ss_pred --CCcCCCCCCChhh--cccc-------------eeEEecc---------------------------CcH-h--hcCCC
Confidence 5677777766321 1110 0000000 000 0 01234
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-------cCCCC--eEEcCCceEEcCC-----
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-------RFPNN--VVKKPDIAELTPT----- 315 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-------~~~~~--i~~~~~v~~~~~~----- 315 (1129)
+++| ||+|++|+|+|..|++.+.+|++++|.+.+... ..... +..+..|+++.++
T Consensus 146 ~v~V-----------vG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~v~ 214 (310)
T 1fl2_A 146 RVAV-----------IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVV 214 (310)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEEEEEEESSSSEE
T ss_pred EEEE-----------ECCCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhhCCCeEEecCCceEEEEcCCCcEE
Confidence 4444 799999999999999999999999998765211 01123 3445568888654
Q ss_pred ceEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccccc
Q psy12350 316 GVRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHESC 387 (1129)
Q Consensus 316 ~v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~~~ 387 (1129)
+|.+++ |+ ++++|.||+|+|++++.+++.. . +..+++..+....++ .++.|++|++|.....| ......
T Consensus 215 ~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~-l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~ 291 (310)
T 1fl2_A 215 GLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEG-A-VERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATG 291 (310)
T ss_dssp EEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHH
T ss_pred EEEEEECCCCcEEEEEcCEEEEeeCCccCchHHhc-c-ccccCCCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHh
Confidence 467764 54 5799999999999999988874 2 445444433333332 26789999999876543 233347
Q ss_pred ceeeehhhccccccc
Q psy12350 388 GIKVVNKNVQPLYKH 402 (1129)
Q Consensus 388 ~~~~~a~~~~~~~~~ 402 (1129)
|++.+|.++...+.+
T Consensus 292 ~g~~aa~~i~~~l~~ 306 (310)
T 1fl2_A 292 EGAKASLSAFDYLIR 306 (310)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 777778777665443
No 41
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=99.86 E-value=1.6e-22 Score=239.41 Aligned_cols=290 Identities=15% Similarity=0.202 Sum_probs=174.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||++|++ .+++|+|||++ .+||+|.+ .+|. |.+ .++.... ....+.....|.
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~~~~---~gci----P~k-~l~~~a~--~~~~~~~~~~~g 70 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAA--FGKRVALIESK-ALGGTCVN---VGCV----PKK-VMWYASH--LAEAVRDAPGFG 70 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHH---HSHH----HHH-HHHHHHH--HHHHHHHGGGGT
T ss_pred cCcEEEECCCHHHHHHHHHHHh--CCCcEEEEcCC-CCCCcCcC---cCch----hHH-HHHHHHH--HHHHHhhhhhcC
Confidence 5899999999999999999999 67999999997 79999984 2221 111 1111000 000001111111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHH-----------hcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFAD-----------NFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~-----------~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++. .....+..++.++.+.+++ +.++ .++.++ ++.++ .+.+.+ + .....||
T Consensus 71 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~i~-------~~~v~~----~--g~~~~~d 132 (463)
T 2r9z_A 71 VQA--SGGTLDWPRLVAGRDRYIGAINSFWDGYVERLGI--TRVDGH-ARFVD-------AHTIEV----E--GQRLSAD 132 (463)
T ss_dssp BCC--C---CCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESC-EEEEE-------TTEEEE----T--TEEEEEE
T ss_pred ccc--CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--EEEEeE-EEEcc-------CCEEEE----C--CEEEEcC
Confidence 111 0112345555555444432 3333 444443 32232 234433 1 2356799
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+||+||| +.|..|++||.. .+ ..+..+
T Consensus 133 -----~lviAtG--s~p~~p~i~G~~--~~-----------------~~~~~~--------------------------- 159 (463)
T 2r9z_A 133 -----HIVIATG--GRPIVPRLPGAE--LG-----------------ITSDGF--------------------------- 159 (463)
T ss_dssp -----EEEECCC--EEECCCSCTTGG--GS-----------------BCHHHH---------------------------
T ss_pred -----EEEECCC--CCCCCCCCCCcc--ce-----------------ecHHHH---------------------------
Confidence 9999999 788888887631 00 000000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
..... ..++++| ||||++|+|+|..|++.|.+|+++++.+.+++...+ -++
T Consensus 160 ~~~~~----~~~~vvV-----------vGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i 224 (463)
T 2r9z_A 160 FALQQ----QPKRVAI-----------IGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIET 224 (463)
T ss_dssp HHCSS----CCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred hhhhc----cCCEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 00000 1233333 899999999999999999999999999876543221 145
Q ss_pred EEcCCceEEcCC----ceEEcCCC-EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccc
Q psy12350 304 VKKPDIAELTPT----GVRFQDGS-YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYT 377 (1129)
Q Consensus 304 ~~~~~v~~~~~~----~v~~~dg~-~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~ 377 (1129)
..+..|++++++ .|.++||+ ++++|.||+|+|++++.++|. +..++.++++..+....++ .+++|++|++|..
T Consensus 225 ~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD~ 303 (463)
T 2r9z_A 225 HLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQ-NTNVPGVYALGDI 303 (463)
T ss_dssp ESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTS-BCSSTTEEECGGG
T ss_pred EeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCC-ccCCCCEEEEeec
Confidence 557778888642 37788998 899999999999999998652 2334555544433322222 2678999999987
Q ss_pred ccc-cc-cccccceeeehhhccc
Q psy12350 378 YRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 378 ~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
... ++ .....|++.+|.++.+
T Consensus 304 ~~~~~~~~~A~~~g~~aa~~i~g 326 (463)
T 2r9z_A 304 TGRDQLTPVAIAAGRRLAERLFD 326 (463)
T ss_dssp GTSCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCcccHHHHHHHHHHHHHHHcC
Confidence 532 22 1223778888877764
No 42
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=99.86 E-value=5.1e-22 Score=236.36 Aligned_cols=295 Identities=17% Similarity=0.217 Sum_probs=178.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+||||||||++||..|++ .|++|+||||+ .+||+|.+ .+|. |.+...+.. .....+.....|
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~~~n---~gci----P~k~l~~~~---~~~~~~~~~~~~ 76 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAAS--YGAKTLLVEAK-ALGGTCVN---VGCV----PKKVMWYAS---DLATRVSHANEY 76 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TSCCEEEEESS-CTTHHHHH---HSHH----HHHHHHHHH---HHHHHHTTTTTT
T ss_pred ccCCEEEEcCCHHHHHHHHHHHH--CCCcEEEEeCC-CcCCcCcc---cCcH----HHHHHHHHH---HHHHHHHhHHhc
Confidence 45899999999999999999999 67999999996 79999984 2221 111111110 000000011111
Q ss_pred CCCCC----CCCCCCCHHHHHHHHHHHH-----------HhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 88 HHKGH----PDKSYIAANDVLEYLNDFA-----------DNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 88 ~~~~~----~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
.+... +.....+...+.++.+.++ ++.++ .+..++ ++.++ .+.+.+.+ .++...
T Consensus 77 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~i~-------~~~~~v~~-~~g~~~ 145 (479)
T 2hqm_A 77 GLYQNLPLDKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKV--DVVFGW-ARFNK-------DGNVEVQK-RDNTTE 145 (479)
T ss_dssp TBSTTSCCSGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTE--EEEEEE-EEECT-------TSCEEEEE-SSSCCE
T ss_pred CcccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEee-------CCEEEEEe-CCCcEE
Confidence 11100 0011234445554443333 23333 444443 44443 23444432 222223
Q ss_pred eEEecceeeeEEEEecccCCCCCcc-ccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhc
Q psy12350 153 FYLFDLQVRFFLQLMQGHVTLPSKA-EMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKI 231 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~~p~~p-~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 231 (1129)
...|| +||+||| +.|..| ++||... . ..+..+
T Consensus 146 ~~~~d-----~lviAtG--s~p~~p~~i~g~~~-~------------------~~~~~~--------------------- 178 (479)
T 2hqm_A 146 VYSAN-----HILVATG--GKAIFPENIPGFEL-G------------------TDSDGF--------------------- 178 (479)
T ss_dssp EEEEE-----EEEECCC--EEECCCTTSTTGGG-S------------------BCHHHH---------------------
T ss_pred EEEeC-----EEEEcCC--CCCCCCCCCCCccc-c------------------cchHHH---------------------
Confidence 56789 9999999 788888 7876310 0 000000
Q ss_pred ccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC----------
Q psy12350 232 YFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------- 301 (1129)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------- 301 (1129)
+ . ... ..++++| ||||++|+|+|..|++.|.+|+++++.+.+++...++
T Consensus 179 -~----~-l~~----~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~ 237 (479)
T 2hqm_A 179 -F----R-LEE----QPKKVVV-----------VGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYV 237 (479)
T ss_dssp -H----H-CSS----CCSEEEE-----------ECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH
T ss_pred -h----c-ccc----cCCeEEE-----------ECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHH
Confidence 0 0 000 1233333 8999999999999999999999999998876543221
Q ss_pred ----CeEEcCCceEEcCC------ceEEcCC-CEeecCEEEEcccccccCCC-CCCCCCeEeecCcccccccccccCCCC
Q psy12350 302 ----NVVKKPDIAELTPT------GVRFQDG-SYEQVDIILYCTGYTYRYPF-LHESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 302 ----~i~~~~~v~~~~~~------~v~~~dg-~~~~~D~VI~atG~~~~~~~-l~~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
++..++.|++++++ .|.++|| +++++|.||+|+|++++..+ ++ ..++.++++..+....++ .+++|
T Consensus 238 ~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~-~~gl~~~~~G~i~vd~~~-~t~~~ 315 (479)
T 2hqm_A 238 KEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSE-NVGIKLNSHDQIIADEYQ-NTNVP 315 (479)
T ss_dssp HHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGG-GGTCCBCTTSCBCCCTTC-BCSST
T ss_pred hCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChh-hcCceECCCCCEeECCCC-ccCCC
Confidence 45667788888642 3778899 78999999999999999854 34 455666654433333332 36789
Q ss_pred CeEEeccccc----ccccccccceeeehhhccc
Q psy12350 370 SMCIIGYTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 370 ~l~~~G~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
++|++|.... ++.+. .||+.+|.++.+
T Consensus 316 ~IyA~GD~~~~~~~~~~A~--~~g~~aa~~i~~ 346 (479)
T 2hqm_A 316 NIYSLGDVVGKVELTPVAI--AAGRKLSNRLFG 346 (479)
T ss_dssp TEEECGGGTTSSCCHHHHH--HHHHHHHHHHHS
T ss_pred CEEEEEecCCCcccHHHHH--HHHHHHHHHhcC
Confidence 9999998843 23344 788888888764
No 43
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=99.86 E-value=4.7e-23 Score=236.99 Aligned_cols=270 Identities=13% Similarity=0.108 Sum_probs=165.3
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS 85 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 85 (1129)
...+.||+|||||+||++||..|+. .+.+|+|||+++.++. . +..+++.+...
T Consensus 6 ~~~~~~~vIvGgG~AGl~aA~~L~~--~~~~itlie~~~~~~y----------------------~--~~~l~~~l~g~- 58 (385)
T 3klj_A 6 HHKSTKILILGAGPAGFSAAKAALG--KCDDITMINSEKYLPY----------------------Y--RPRLNEIIAKN- 58 (385)
T ss_dssp --CBCSEEEECCSHHHHHHHHHHTT--TCSCEEEECSSSSCCB----------------------C--GGGHHHHHHSC-
T ss_pred ccCCCCEEEEcCcHHHHHHHHHHhC--CCCEEEEEECCCCCCc----------------------c--cChhhHHHcCC-
Confidence 3456799999999999999999955 7899999999876431 0 11111111110
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEE
Q psy12350 86 GYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQ 165 (1129)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lv 165 (1129)
.+.+++..+..++.+++++ .++++++|+.+++ +.+.+++. ......|| +||
T Consensus 59 ------------~~~~~l~~~~~~~~~~~~i--~~~~~~~V~~id~-----~~~~v~~~-----~g~~~~yd-----~lv 109 (385)
T 3klj_A 59 ------------KSIDDILIKKNDWYEKNNI--KVITSEFATSIDP-----NNKLVTLK-----SGEKIKYE-----KLI 109 (385)
T ss_dssp ------------CCGGGTBSSCHHHHHHTTC--EEECSCCEEEEET-----TTTEEEET-----TSCEEECS-----EEE
T ss_pred ------------CCHHHccCCCHHHHHHCCC--EEEeCCEEEEEEC-----CCCEEEEC-----CCCEEECC-----EEE
Confidence 0111222223444556666 7899999999986 33434332 23467899 999
Q ss_pred EecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc
Q psy12350 166 LMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245 (1129)
Q Consensus 166 vAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~ 245 (1129)
|||| +.|+.|++||.. +. +.. +..++...
T Consensus 110 lAtG--~~p~~p~i~G~~-----~v---------------~~~-----------------------------~~~~d~~~ 138 (385)
T 3klj_A 110 IASG--SIANKIKVPHAD-----EI---------------FSL-----------------------------YSYDDALK 138 (385)
T ss_dssp ECCC--EEECCCCCTTCS-----CE---------------ECC-----------------------------SSHHHHHH
T ss_pred EecC--CCcCCCCCCCCC-----Ce---------------EEe-----------------------------CCHHHHHH
Confidence 9999 789999887732 10 000 11111110
Q ss_pred c-----cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCCCeEEcCCceEEcCCceEEc
Q psy12350 246 F-----RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQ 320 (1129)
Q Consensus 246 ~-----~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~~i~~~~~v~~~~~~~v~~~ 320 (1129)
. ..++++| ||||.+|+|+|..|++.|.+||++++.+.+++..++..+.. .-...++..+|.+.
T Consensus 139 l~~~l~~~~~vvV-----------IGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~-~~~~~l~~~gV~~~ 206 (385)
T 3klj_A 139 IKDECKNKGKAFI-----------IGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGL-FLKDKLDRLGIKIY 206 (385)
T ss_dssp HHHHHHHHSCEEE-----------ECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHH-HHHHHHHTTTCEEE
T ss_pred HHHHhhcCCeEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHH-HHHHHHHhCCCEEE
Confidence 0 1344444 79999999999999999999999999988766433221000 00001112222222
Q ss_pred C-------CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc------cccccc
Q psy12350 321 D-------GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP------FLHESC 387 (1129)
Q Consensus 321 d-------g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~------~~~~~~ 387 (1129)
. |+++++|.||+|+|++++.++++. .++..+....++-+.+ .++|++|++|.....+ ......
T Consensus 207 ~~~~v~~ig~~~~~D~vv~a~G~~p~~~~~~~-~gl~~~~gi~vd~~~~---t~~~~IyA~GD~a~~~~~~~~~~~~A~~ 282 (385)
T 3klj_A 207 TNSNFEEMGDLIRSSCVITAVGVKPNLDFIKD-TEIASKRGILVNDHME---TSIKDIYACGDVAEFYGKNPGLINIANK 282 (385)
T ss_dssp CSCCGGGCHHHHHHSEEEECCCEEECCGGGTT-SCCCBSSSEEECTTCB---CSSTTEEECGGGEEETTBCCCCHHHHHH
T ss_pred eCCEEEEcCeEEecCeEEECcCcccChhhhhh-cCCCcCCCEEECCCcc---cCCCCEEEEEeeEecCCCcccHHHHHHH
Confidence 1 567899999999999999999874 4566543322332222 5789999999875421 122236
Q ss_pred ceeeehhhccc
Q psy12350 388 GIKVVNKNVQP 398 (1129)
Q Consensus 388 ~~~~~a~~~~~ 398 (1129)
||+.+|+++.+
T Consensus 283 qg~~aa~~i~g 293 (385)
T 3klj_A 283 QGEVAGLNACG 293 (385)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 77777776653
No 44
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=99.86 E-value=1.2e-21 Score=218.42 Aligned_cols=277 Identities=11% Similarity=0.011 Sum_probs=179.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+|||+||..|++ .+++|+|||+++..++.+.. ...++
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~~~~~~~----------------------------~~~~~---- 48 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGR--ARKNILLVDAGERRNRFASH----------------------------SHGFL---- 48 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCCGGGGCSC----------------------------CCSST----
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCcccccchh----------------------------hcCCc----
Confidence 799999999999999999999 56899999996533222110 01111
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
.....+..++.+++.+++.+++.. .+ ++++|+.+++.. +.|.+... ......|| +||+|||
T Consensus 49 ----~~~~~~~~~~~~~~~~~~~~~~~v-~~-~~~~v~~i~~~~---~~~~v~~~-----~g~~~~~d-----~vviAtG 109 (297)
T 3fbs_A 49 ----GQDGKAPGEIIAEARRQIERYPTI-HW-VEGRVTDAKGSF---GEFIVEID-----GGRRETAG-----RLILAMG 109 (297)
T ss_dssp ----TCTTCCHHHHHHHHHHHHTTCTTE-EE-EESCEEEEEEET---TEEEEEET-----TSCEEEEE-----EEEECCC
T ss_pred ----CCCCCCHHHHHHHHHHHHHhcCCe-EE-EEeEEEEEEEcC---CeEEEEEC-----CCCEEEcC-----EEEECCC
Confidence 112456788999999998887321 22 356888887631 22433321 12357799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
..|..|++||... +.+ .+.+...+ ..... ...+
T Consensus 110 --~~~~~~~~~g~~~--~~~-------------~~~~~~~~---------------------------~~~~~---~~~~ 142 (297)
T 3fbs_A 110 --VTDELPEIAGLRE--RWG-------------SAVFHCPY---------------------------CHGYE---LDQG 142 (297)
T ss_dssp --CEEECCCCBTTGG--GBT-------------TTEESCHH---------------------------HHTGG---GTTC
T ss_pred --CCCCCCCCCCchh--hcC-------------CeeEEccc---------------------------Ccchh---hcCC
Confidence 6778887776321 111 00010000 11111 1234
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc-------CCCCeEEcCCceEEcCC-ceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR-------FPNNVVKKPDIAELTPT-GVRFQD 321 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~-------~~~~i~~~~~v~~~~~~-~v~~~d 321 (1129)
+++| ||+|++|+|+|..|++.+ +|+++++.+...... ..-++. ...|++++++ .|.++|
T Consensus 143 ~v~v-----------vG~G~~~~e~a~~l~~~g-~v~~v~~~~~~~~~~~~~~l~~~gv~i~-~~~v~~i~~~~~v~~~~ 209 (297)
T 3fbs_A 143 KIGV-----------IAASPMAIHHALMLPDWG-ETTFFTNGIVEPDADQHALLAARGVRVE-TTRIREIAGHADVVLAD 209 (297)
T ss_dssp EEEE-----------ECCSTTHHHHHHHGGGTS-EEEEECTTTCCCCHHHHHHHHHTTCEEE-CSCEEEEETTEEEEETT
T ss_pred EEEE-----------EecCccHHHHHHHhhhcC-cEEEEECCCCCCCHHHHHHHHHCCcEEE-cceeeeeecCCeEEeCC
Confidence 4444 799999999999999998 999999876522110 111344 3678899877 799999
Q ss_pred CCEeecCEEEEcccccccCCCCCCCCCeEeec--Cc-ccccccccccCCCCCeEEeccccccc--ccccccceeeehhhc
Q psy12350 322 GSYEQVDIILYCTGYTYRYPFLHESCGIKVVN--KN-VQPLYKHLINIEHPSMCIIGYTYRYP--FLHESCGIKVVNKNV 396 (1129)
Q Consensus 322 g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~--~~-~~~l~~~~~~~~~p~l~~~G~~~~~~--~~~~~~~~~~~a~~~ 396 (1129)
|+++++|.||+|+|++++.++++ ..++..+. .. .+....+ +.++.|++|++|.....| ......|++.+|.++
T Consensus 210 g~~~~~D~vi~a~G~~p~~~~~~-~~g~~~~~~~~G~~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i 287 (297)
T 3fbs_A 210 GRSIALAGLFTQPKLRITVDWIE-KLGCAVEEGPMGSTIVTDPM-KQTTARGIFACGDVARPAGSVALAVGDGAMAGAAA 287 (297)
T ss_dssp SCEEEESEEEECCEEECCCSCHH-HHTCCEEEETTEEEECCCTT-CBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEEEccCcccCchhHH-hcCCccccCCCCceEEeCCC-CccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHH
Confidence 99999999999999999998876 34454442 22 2222222 336789999999876522 123337787878777
Q ss_pred ccccc
Q psy12350 397 QPLYK 401 (1129)
Q Consensus 397 ~~~~~ 401 (1129)
...+.
T Consensus 288 ~~~l~ 292 (297)
T 3fbs_A 288 HRSIL 292 (297)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 65543
No 45
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=99.86 E-value=8.1e-23 Score=238.26 Aligned_cols=275 Identities=13% Similarity=0.165 Sum_probs=171.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||+||++||..|++.|...+|+|||+++.++.. +..+++...... .+
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~------------------------~~~l~~~~~~g~-~~- 56 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD------------------------RPSLSKAVLDGS-LE- 56 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC------------------------SGGGGTHHHHTS-SS-
T ss_pred CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC------------------------CccccHHHhCCC-CC-
Confidence 5899999999999999999997655569999998754311 001111111000 00
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
..... +..++.++.++ +++++++|+.+++ +.+.+... ......|| +||+|||
T Consensus 57 ----~~~~~-------~~~~~~~~~~i--~~~~~~~v~~id~-----~~~~v~~~-----~g~~~~~d-----~lvlAtG 108 (410)
T 3ef6_A 57 ----RPPIL-------AEADWYGEARI--DMLTGPEVTALDV-----QTRTISLD-----DGTTLSAD-----AIVIATG 108 (410)
T ss_dssp ----SCCBS-------SCTTHHHHTTC--EEEESCCEEEEET-----TTTEEEET-----TSCEEECS-----EEEECCC
T ss_pred ----HHHhc-------CCHHHHHHCCC--EEEeCCEEEEEEC-----CCCEEEEC-----CCCEEECC-----EEEEccC
Confidence 00000 01122344555 8899999999876 33444332 12357799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||... .+ .+.... .+.+....+.+ ...+
T Consensus 109 --~~p~~~~ipG~~~---~~---------------v~~~~~----------------------~~d~~~l~~~~--~~~~ 144 (410)
T 3ef6_A 109 --SRARTMALPGSQL---PG---------------VVTLRT----------------------YGDVQVLRDSW--TSAT 144 (410)
T ss_dssp --EEECCCCCTTTTS---TT---------------EECCCS----------------------HHHHHHHHHHC--CTTC
T ss_pred --CcccCCCCCCccc---cc---------------eEEecc----------------------HHHHHHHHHHh--ccCC
Confidence 7788888877321 11 000000 00000000011 0123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAELTP 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~~~ 314 (1129)
+++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -++..+..|+++++
T Consensus 145 ~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 213 (410)
T 3ef6_A 145 RLLI-----------VGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSG 213 (410)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEEC
T ss_pred eEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEec
Confidence 4443 899999999999999999999999999877543211 14566788999976
Q ss_pred C----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccccc--------
Q psy12350 315 T----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPF-------- 382 (1129)
Q Consensus 315 ~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~-------- 382 (1129)
+ +|.++||+++++|.||+|+|++++.++++ ..++.++....++.+.+ .++|++|++|.....|.
T Consensus 214 ~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~l~~-~~gl~~~~gi~vd~~~~---t~~~~IyA~GD~a~~~~~~g~~~~~ 289 (410)
T 3ef6_A 214 EGQLEQVMASDGRSFVADSALICVGAEPADQLAR-QAGLACDRGVIVDHCGA---TLAKGVFAVGDVASWPLRAGGRRSL 289 (410)
T ss_dssp SSSCCEEEETTSCEEECSEEEECSCEEECCHHHH-HTTCCBSSSEECCTTSB---CSSTTEEECGGGEEEEBTTSSEECC
T ss_pred cCcEEEEEECCCCEEEcCEEEEeeCCeecHHHHH-hCCCccCCeEEEccCee---ECCCCEEEEEcceeccCCCCCeeee
Confidence 5 48899999999999999999999988875 34455543222333332 57899999998754432
Q ss_pred ---cccccceeeehhhcc
Q psy12350 383 ---LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 383 ---~~~~~~~~~~a~~~~ 397 (1129)
.....||+.+|.++.
T Consensus 290 ~~~~~A~~qg~~aa~~i~ 307 (410)
T 3ef6_A 290 ETYMNAQRQAAAVAAAIL 307 (410)
T ss_dssp CCHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHc
Confidence 122356666666554
No 46
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=99.85 E-value=2.7e-22 Score=236.67 Aligned_cols=289 Identities=15% Similarity=0.191 Sum_probs=175.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccc-ccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIM-ELSG 86 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~-~~~d 86 (1129)
..+||+||||||||++||++|++ .|++|+|||++ .+||+|.+ .+|. |.+ .++.... ....+. ....
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~~~~---~gci----P~k-~l~~~a~--~~~~~~~~~~~ 69 (450)
T 1ges_A 3 KHYDYIAIGGGSGGIASINRAAM--YGQKCALIEAK-ELGGTCVN---VGCV----PKK-VMWHAAQ--IREAIHMYGPD 69 (450)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESS-CTTHHHHH---HSHH----HHH-HHHHHHH--HHHHHHTTGGG
T ss_pred ccCCEEEECCCHHHHHHHHHHHh--CCCeEEEEcCC-CCCCcccc---cCcc----ChH-HHHHHHH--HHHHHHHHHHh
Confidence 35899999999999999999999 67999999996 79999984 2221 111 1110000 000000 0111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHH-----------HhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFA-----------DNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~-----------~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
|.++. .....+..++.++.+++. ++.++ .+..++ ++.++ .+.+.+ + .....
T Consensus 70 ~g~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~-~~~i~-------~~~v~~----~--g~~~~ 131 (450)
T 1ges_A 70 YGFDT--TINKFNWETLIASRTAYIDRIHTSYENVLGKNNV--DVIKGF-ARFVD-------AKTLEV----N--GETIT 131 (450)
T ss_dssp GTEEE--EEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESC-CEEEE-------TTEEEE----T--TEEEE
T ss_pred cCccC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEec-------CCEEEE----C--CEEEE
Confidence 11100 001123444554444333 33333 444443 23332 133333 1 23577
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +||+||| +.|..|++||.. .+ ..+..+
T Consensus 132 ~d-----~lviAtG--s~p~~p~i~g~~--~~-----------------~~~~~~------------------------- 160 (450)
T 1ges_A 132 AD-----HILIATG--GRPSHPDIPGVE--YG-----------------IDSDGF------------------------- 160 (450)
T ss_dssp EE-----EEEECCC--EEECCCCSTTGG--GS-----------------BCHHHH-------------------------
T ss_pred eC-----EEEECCC--CCCCCCCCCCcc--ce-----------------ecHHHh-------------------------
Confidence 99 9999999 788888887631 00 000000
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------- 301 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------- 301 (1129)
..... ..++++| ||||++|+|+|..|++.|.+|+++++.+.+++...+.
T Consensus 161 --~~~~~----~~~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv 223 (450)
T 1ges_A 161 --FALPA----LPERVAV-----------VGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGP 223 (450)
T ss_dssp --HHCSS----CCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSC
T ss_pred --hhhhh----cCCeEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCC
Confidence 00000 1233333 8999999999999999999999999988766532221
Q ss_pred CeEEcCCceEEcCC-----ceEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 302 NVVKKPDIAELTPT-----GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
++..++.|++++++ .|.++||+++++|.||+|+|++++.++|. +..++.++++..+....++ .+++|++|++|
T Consensus 224 ~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~-~t~~~~IyA~G 302 (450)
T 1ges_A 224 QLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ-NTNIEGIYAVG 302 (450)
T ss_dssp EEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEECS
T ss_pred EEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCC-ccCCCCEEEEe
Confidence 45667788888642 37788999999999999999999998652 2344555544433333332 26789999999
Q ss_pred cccc----ccccccccceeeehhhccc
Q psy12350 376 YTYR----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 376 ~~~~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.... ++.+. .|++.+|.++.+
T Consensus 303 D~~~~~~~~~~A~--~~g~~aa~~i~~ 327 (450)
T 1ges_A 303 DNTGAVELTPVAV--AAGRRLSERLFN 327 (450)
T ss_dssp GGGTSCCCHHHHH--HHHHHHHHHHHT
T ss_pred ccCCCCccHHHHH--HHHHHHHHHHcC
Confidence 8753 23344 888888887764
No 47
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.85 E-value=4e-22 Score=238.38 Aligned_cols=272 Identities=16% Similarity=0.219 Sum_probs=156.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+||||||||++||+.|++ .+++|+|||++ .+||+|.+ .+|. |.+...+.. .....+.....|.+
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~c~~---~gc~----P~k~l~~~a---~~~~~~~~~~~~g~ 69 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAAR--HNAKVALVEKS-RLGGTCVN---VGCV----PKKIMFNAA---SVHDILENSRHYGF 69 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-STTHHHHH---TSHH----HHHHHHHHH---HHHHHHHHGGGGTC
T ss_pred cCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCC-CcCccccc---cCCc----chHHHHHHH---HHHHHHHhhHhcCC
Confidence 799999999999999999999 67999999997 59999985 2221 111000000 00011111111222
Q ss_pred CCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecc--------ccCc
Q psy12350 90 KGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGI--------PRDT 150 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~--------~~~~ 150 (1129)
... ...+..++.++ +..+.++.++ .++.++. ..++ .+.+.+.+. ..+.
T Consensus 70 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~-~~id-------~~~v~v~~~~~~~~~~~~~~~ 136 (500)
T 1onf_A 70 DTK---FSFNLPLLVERRDKYIQRLNNIYRQNLSKDKV--DLYEGTA-SFLS-------ENRILIKGTKDNNNKDNGPLN 136 (500)
T ss_dssp CCC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESCC-CCC-----------------------------
T ss_pred ccC---CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEE-EEee-------CCEEEEEeccccccccccCCC
Confidence 111 11233333322 2333344444 4555532 2222 233333220 0111
Q ss_pred cceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchh
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLK 230 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 230 (1129)
...+.|| +||+||| +.|..|++||.. .+ .++..+
T Consensus 137 ~~~~~~d-----~lViAtG--s~p~~p~i~G~~--~~-----------------~~~~~~-------------------- 170 (500)
T 1onf_A 137 EEILEGR-----NILIAVG--NKPVFPPVKGIE--NT-----------------ISSDEF-------------------- 170 (500)
T ss_dssp ----CBS-----SEEECCC--CCBCCCSCTTGG--GC-----------------EEHHHH--------------------
T ss_pred ceEEEeC-----EEEECCC--CCCCCCCCCCCC--cc-----------------cCHHHH--------------------
Confidence 2356789 9999999 788888887631 00 000000
Q ss_pred cccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------
Q psy12350 231 IYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------- 301 (1129)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------- 301 (1129)
. .+. ..++++| ||||++|+|+|..|++.|.+||++++.+.+++...++
T Consensus 171 -------~---~~~--~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l 227 (500)
T 1onf_A 171 -------F---NIK--ESKKIGI-----------VGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDM 227 (500)
T ss_dssp -------T---TCC--CCSEEEE-----------ECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHH
T ss_pred -------h---ccC--CCCeEEE-----------ECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHH
Confidence 0 011 0233333 8999999999999999999999999998876532221
Q ss_pred -----CeEEcCCceEEcCC-----ceEEcCCCE-eecCEEEEcccccccCCCC-CCCCCeEeecCcccccccccccCCCC
Q psy12350 302 -----NVVKKPDIAELTPT-----GVRFQDGSY-EQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 302 -----~i~~~~~v~~~~~~-----~v~~~dg~~-~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
++..+..|++++++ .|.++||++ +++|.||+|+|++++.++| -+..++.+ ++..+....++ .+++|
T Consensus 228 ~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~-~t~~~ 305 (500)
T 1onf_A 228 KKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQ-RTSVN 305 (500)
T ss_dssp HHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTC-BCSSS
T ss_pred HhCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCc-ccCCC
Confidence 45667788888642 377889988 9999999999999999765 33555655 33322222222 25678
Q ss_pred CeEEecccc
Q psy12350 370 SMCIIGYTY 378 (1129)
Q Consensus 370 ~l~~~G~~~ 378 (1129)
++|++|...
T Consensus 306 ~iya~GD~~ 314 (500)
T 1onf_A 306 NIYAVGDCC 314 (500)
T ss_dssp SEEECSTTE
T ss_pred CEEEEeccc
Confidence 888888664
No 48
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=99.85 E-value=7.1e-23 Score=244.20 Aligned_cols=304 Identities=15% Similarity=0.136 Sum_probs=179.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..|++ .|++|+|+||+ .+||+|.+ .+|. |.+...+.. ........++.|.
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~--~G~~V~liE~~-~~GGtc~~---~gci----Psk~l~~~a---~~~~~~~~~~~~g 74 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKK--HTDKVVLIEGG-AYGTTCAR---VGCM----PSKLLIAAA---DASYHASQTDLFG 74 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TCSCEEEEESS-CSSCHHHH---HSHH----HHHHHHHHH---HHHHHHTCGGGGT
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCC-CCCCcccc---cChh----cCHHHHHHH---HHHHHHhhhhhcC
Confidence 3799999999999999999999 66999999995 59999974 2221 111111110 0001111222222
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCc--ceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLR--NLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~--~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
++. .....+..++.++++.+.+++... ..+.....+..+.......+.+.+.+. ......|| +|||
T Consensus 75 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~-----~~~~~~~d-----~lVi 142 (492)
T 3ic9_A 75 IQV--DRISVNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVD-----DHSQVIAK-----RIVI 142 (492)
T ss_dssp EEC--SEEEECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEET-----TTEEEEEE-----EEEE
T ss_pred cCC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEc-----CCcEEEeC-----EEEE
Confidence 211 111246677778877766655310 000000011111111111233444331 23457799 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|..|++++..... .+. ..+.+...
T Consensus 143 ATG--s~p~~p~~~~~~~~~------------------v~t-------------------------------~~~~~~~~ 171 (492)
T 3ic9_A 143 ATG--SRPNYPEFLAAAGSR------------------LLT-------------------------------NDNLFELN 171 (492)
T ss_dssp CCC--EECCCCHHHHTTGGG------------------EEC-------------------------------HHHHTTCS
T ss_pred ccC--CCCcCCCCCCccCCc------------------EEc-------------------------------HHHHhhhh
Confidence 999 889888775421000 000 00000000
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------------CCeEEcCCceEEc
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-------------NNVVKKPDIAELT 313 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-------------~~i~~~~~v~~~~ 313 (1129)
.. +++++| ||||++|+|+|..|++.|.+||+++|.+.+++...+ -++..++.|++++
T Consensus 172 ~~------~k~vvV----iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~V~i~~~~~v~~i~ 241 (492)
T 3ic9_A 172 DL------PKSVAV----FGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEEFYFDAKARVISTI 241 (492)
T ss_dssp SC------CSEEEE----ESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTTSEEETTCEEEEEE
T ss_pred hc------CCeEEE----ECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhCcEEEECCEEEEEE
Confidence 01 233333 899999999999999999999999999887654221 1344466788885
Q ss_pred CC--c--eEEc--CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccccc-ccc
Q psy12350 314 PT--G--VRFQ--DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-PFL 383 (1129)
Q Consensus 314 ~~--~--v~~~--dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-~~~ 383 (1129)
.+ + +.+. || +++++|.||+|+|++++.++|. +..++.++++..+......+..+.|++|++|..... +++
T Consensus 242 ~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~IyA~GD~~~~~~~~ 321 (492)
T 3ic9_A 242 EKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDANNTLTLL 321 (492)
T ss_dssp ECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTTEEECGGGGTSSCSH
T ss_pred EcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCCEEEEEecCCCCccH
Confidence 43 3 4554 67 5689999999999999999853 345667666554333211222578999999987543 222
Q ss_pred -ccccceeeehhhccc
Q psy12350 384 -HESCGIKVVNKNVQP 398 (1129)
Q Consensus 384 -~~~~~~~~~a~~~~~ 398 (1129)
.+..|++.+|.++.+
T Consensus 322 ~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 322 HEAADDGKVAGTNAGA 337 (492)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC
Confidence 334888888888764
No 49
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=99.85 E-value=5.6e-22 Score=236.72 Aligned_cols=283 Identities=12% Similarity=0.128 Sum_probs=172.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC-CCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG-SGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~-~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+|||||+||++||+.|++.+ ++.+|+|||+++.+|..+. ..+.|.. .......
T Consensus 35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~--------------~~~~~~~------~~~~~~~-- 92 (490)
T 2bc0_A 35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFLGA--------------GMALWIG------EQIAGPE-- 92 (490)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBCGG--------------GHHHHHT------TSSSCSG--
T ss_pred CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCcccc--------------ccchhhc------CccCCHH--
Confidence 479999999999999999999954 4599999999876542211 0000100 0000000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
++...+.+.++++++ .++++++|+.++. +...+.+.. .+......|| +||+|
T Consensus 93 --------------~~~~~~~~~~~~~gv--~v~~~~~v~~i~~-----~~~~v~v~~--~g~~~~~~~d-----~lviA 144 (490)
T 2bc0_A 93 --------------GLFYSDKEELESLGA--KVYMESPVQSIDY-----DAKTVTALV--DGKNHVETYD-----KLIFA 144 (490)
T ss_dssp --------------GGBSCCHHHHHHTTC--EEETTCCEEEEET-----TTTEEEEEE--TTEEEEEECS-----EEEEC
T ss_pred --------------HhhhcCHHHHHhCCC--EEEeCCEEEEEEC-----CCCEEEEEe--CCcEEEEECC-----EEEEC
Confidence 000011223345565 7788999998875 233444431 1223457799 99999
Q ss_pred cccCCCCCccccccchh----hhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTE----QDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDF 243 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 243 (1129)
|| +.|..|++||... ..+.+. ..+..... .+.+.+.+
T Consensus 145 tG--~~p~~p~i~G~~~~~~~~~f~~~-----------~~~v~~~~--------------------------~~~~~~~~ 185 (490)
T 2bc0_A 145 TG--SQPILPPIKGAEIKEGSLEFEAT-----------LENLQFVK--------------------------LYQNSADV 185 (490)
T ss_dssp CC--EEECCCSCBTCCBCTTCTTCCBS-----------STTEEECS--------------------------SHHHHHHH
T ss_pred CC--CCcCCCCCCCccccccccccccc-----------cCCEEEeC--------------------------CHHHHHHH
Confidence 99 7888888877320 011110 00000000 00001111
Q ss_pred c----cccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeE
Q psy12350 244 T----EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVV 304 (1129)
Q Consensus 244 ~----~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~ 304 (1129)
. ....++++| ||||++|+|+|..|++.|.+||+++|.+.+++..++ -++.
T Consensus 186 ~~~~~~~~~~~vvV-----------IGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~ 254 (490)
T 2bc0_A 186 IAKLENKDIKRVAV-----------VGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKNMEEHGIQLA 254 (490)
T ss_dssp HHHTTSTTCCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHTTTCEEE
T ss_pred HHHhhhcCCceEEE-----------ECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHHHHhCCeEEE
Confidence 0 011233433 899999999999999999999999999887652211 1466
Q ss_pred EcCCceEEcCCc----eEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcc--cccccccccCCCCCeEEecccc
Q psy12350 305 KKPDIAELTPTG----VRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNV--QPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 305 ~~~~v~~~~~~~----v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~--~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
.++.|+++++++ |.+ ||+++++|.||+|+|++++.++++. . +.++++.. ++.|.+ +++|++|++|...
T Consensus 255 ~~~~v~~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ll~~-~-l~~~~~G~I~Vd~~~~---t~~~~IyA~GD~~ 328 (490)
T 2bc0_A 255 FGETVKEVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTTLGNG-K-IDLFRNGAFLVNKRQE---TSIPGVYAIGDCA 328 (490)
T ss_dssp ETCCEEEEECSSSCCEEEE-SSCEEECSEEEECCCEEECCGGGTT-C-SCBCTTSCBCCCTTCB---CSSTTEEECGGGB
T ss_pred eCCEEEEEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChHHHHh-h-hccCCCCCEEECCCcc---cCCCCEEEeeeeE
Confidence 678899987543 444 8888999999999999999998864 3 55544443 333333 4789999999875
Q ss_pred ccc-----------c-cccccceeeehhhcc
Q psy12350 379 RYP-----------F-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 379 ~~~-----------~-~~~~~~~~~~a~~~~ 397 (1129)
..+ + ..+..|++.+|.++.
T Consensus 329 ~~~~~~~g~~~~~~~~~~A~~qg~~aa~~i~ 359 (490)
T 2bc0_A 329 TIYDNATRDTNYIALASNAVRTGIVAAHNAC 359 (490)
T ss_dssp CEEETTTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred EeccccCCceeecccHHHHHHHHHHHHHHhc
Confidence 421 1 122366666666665
No 50
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=99.85 E-value=6.8e-23 Score=243.76 Aligned_cols=307 Identities=16% Similarity=0.137 Sum_probs=177.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc--------CCcCceEecCCCCCCCCCCCCccCcccccccccCCccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT--------DNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEI 81 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~--------~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~ 81 (1129)
+||+||||||||++||.++++ .|.+|+|+|+. ..+||+|.+ .||. |.+...+..-.....+.
T Consensus 43 YDviVIG~GpaG~~aA~~aa~--~G~kValIE~~~~~~~~~k~~lGGtCln---~GCI----PsK~L~~aa~~~~~~~~- 112 (542)
T 4b1b_A 43 YDYVVIGGGPGGMASAKEAAA--HGARVLLFDYVKPSSQGTKWGIGGTCVN---VGCV----PKKLMHYAGHMGSIFKL- 112 (542)
T ss_dssp EEEEEECCSHHHHHHHHHHHT--TTCCEEEECCCCCCTTCCCCCSSHHHHH---HSHH----HHHHHHHHHHHHHHHHH-
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCCCCcccc---cchH----HHHHHHHHHHHHHHHHh-
Confidence 799999999999999999999 67999999974 458999984 4442 32221111100000000
Q ss_pred cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCC--cceeEeceeeeeeccccccCCCCceEEeccc-cCccceEEecc
Q psy12350 82 MELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNL--RNLCLVNKNVQPLYKHLINIEHPSMCIIGIP-RDTVGFYLFDL 158 (1129)
Q Consensus 82 ~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~--~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~ 158 (1129)
....|.+.. ...-.+..++.++.+...+++.- ...+ -+..|+-+...+...+..++.+.... ........++
T Consensus 113 -~~~~~Gi~~--~~~~~d~~~~~~~~~~~v~~l~~~~~~~l-~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~- 187 (542)
T 4b1b_A 113 -DSKAYGWKF--DNLKHDWKKLVTTVQSHIRSLNFSYMTGL-RSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGK- 187 (542)
T ss_dssp -TGGGGTEEE--EEEEECHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEE-
T ss_pred -hhHhcCccc--CcccccHHHHHHHHHHHHHHHHHHHHHHH-HhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeee-
Confidence 000010000 00112455666665555444310 0000 01123322222222344555543322 2234456778
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
++||||| +.|.+|++++...... . .
T Consensus 188 ----~iiIATG--s~P~~P~~~~~~~~~~-----------------~--------------------------------t 212 (542)
T 4b1b_A 188 ----YILIATG--CRPHIPDDVEGAKELS-----------------I--------------------------------T 212 (542)
T ss_dssp ----EEEECCC--EEECCCSSSBTHHHHC-----------------B--------------------------------C
T ss_pred ----eEEeccC--CCCCCCCcccCCCccc-----------------c--------------------------------C
Confidence 9999999 8999886533111000 0 1
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~ 304 (1129)
+.+.|.....++.++| ||||++|+|+|..++++|.+||++.|+. +++..+++ ++.
T Consensus 213 s~~~l~l~~lP~~lvI----------IGgG~IGlE~A~~~~~lG~~VTii~~~~-~L~~~D~ei~~~l~~~l~~~gi~~~ 281 (542)
T 4b1b_A 213 SDDIFSLKKDPGKTLV----------VGASYVALECSGFLNSLGYDVTVAVRSI-VLRGFDQQCAVKVKLYMEEQGVMFK 281 (542)
T ss_dssp HHHHTTCSSCCCSEEE----------ECCSHHHHHHHHHHHHHTCCEEEEESSC-SSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred chhhhccccCCceEEE----------ECCCHHHHHHHHHHHhcCCeEEEecccc-cccccchhHHHHHHHHHHhhcceee
Confidence 1111111112333333 8999999999999999999999998864 44443322 455
Q ss_pred EcCCceEEcCC--c--eEEcCCCEeecCEEEEcccccccCCCCCC-CCCeEeecCcccccccccccCCCCCeEEecccc-
Q psy12350 305 KKPDIAELTPT--G--VRFQDGSYEQVDIILYCTGYTYRYPFLHE-SCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY- 378 (1129)
Q Consensus 305 ~~~~v~~~~~~--~--v~~~dg~~~~~D~VI~atG~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~- 378 (1129)
....+++++.. . |.+.+++++++|.|++|+|.+|+...|.- ..++.++.......-...+-+++|++|.+|...
T Consensus 282 ~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~~~Ts~p~IyAiGDv~~ 361 (542)
T 4b1b_A 282 NGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHLSCTNIPSIFAVGDVAE 361 (542)
T ss_dssp ETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTTSBCSSTTEEECTTSBT
T ss_pred cceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEeccccccccCCCeEEeccccC
Confidence 66777777543 2 67788999999999999999999988752 245666554332111122236889999999874
Q ss_pred ccc----ccccccceeeehhhcccc
Q psy12350 379 RYP----FLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 379 ~~~----~~~~~~~~~~~a~~~~~~ 399 (1129)
..| .+. .|++.++.++.+.
T Consensus 362 ~~p~La~~A~--~eg~~aa~~i~g~ 384 (542)
T 4b1b_A 362 NVPELAPVAI--KAGEILARRLFKD 384 (542)
T ss_dssp TCCCCHHHHH--HHHHHHHHHHHSC
T ss_pred CchhHHHHHH--HHHHHHHHHHhcC
Confidence 323 243 6777777776654
No 51
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.85 E-value=1.8e-22 Score=231.19 Aligned_cols=266 Identities=14% Similarity=0.160 Sum_probs=169.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
.+|+||||||||++||..|++ .+ +|+|+|+++..+ +. .++. ++.+....
T Consensus 9 ~~vvIIGgG~AGl~aA~~l~~--~g-~V~lie~~~~~~--~~---------------~~~l-------~~~~~g~~---- 57 (367)
T 1xhc_A 9 SKVVIVGNGPGGFELAKQLSQ--TY-EVTVIDKEPVPY--YS---------------KPML-------SHYIAGFI---- 57 (367)
T ss_dssp CEEEEECCSHHHHHHHHHHTT--TS-EEEEECSSSSCC--CC---------------STTH-------HHHHTTSS----
T ss_pred CcEEEECCcHHHHHHHHHHhh--cC-CEEEEECCCCCc--cc---------------cchh-------HHHHhCCC----
Confidence 589999999999999999999 55 999999977432 00 0011 01010000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
..+++..+..++.++.++ .++++++|+.+++ +.+.+. . + .....|| +||||||
T Consensus 58 ---------~~~~~~~~~~~~~~~~~v--~~~~g~~v~~id~-----~~~~V~-~---~--g~~~~~d-----~lViATG 110 (367)
T 1xhc_A 58 ---------PRNRLFPYSLDWYRKRGI--EIRLAEEAKLIDR-----GRKVVI-T---E--KGEVPYD-----TLVLATG 110 (367)
T ss_dssp ---------CGGGGCSSCHHHHHHHTE--EEECSCCEEEEET-----TTTEEE-E---S--SCEEECS-----EEEECCC
T ss_pred ---------CHHHhccCCHHHHHhCCc--EEEECCEEEEEEC-----CCCEEE-E---C--CcEEECC-----EEEECCC
Confidence 011111122333455565 7888889988876 334443 1 1 2357899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc--c
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF--R 247 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~ 247 (1129)
+.|..|++||. + +.+ .... . .....+... .
T Consensus 111 --s~p~~p~i~G~-~----~v~--------------~~~~-----------------------~----~~~~~l~~~~~~ 142 (367)
T 1xhc_A 111 --ARAREPQIKGK-E----YLL--------------TLRT-----------------------I----FDADRIKESIEN 142 (367)
T ss_dssp --EEECCCCSBTG-G----GEE--------------CCCS-----------------------H----HHHHHHHHHHHH
T ss_pred --CCCCCCCCCCc-C----CEE--------------EEcC-----------------------H----HHHHHHHHHhhc
Confidence 78888888761 1 100 0000 0 000011000 1
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELT 313 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~ 313 (1129)
.++++| ||||++|+|+|..|++.|.+||++++.+.+++ ..++ ++..++.|++++
T Consensus 143 ~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~ 210 (367)
T 1xhc_A 143 SGEAII-----------IGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG-LDEELSNMIKDMLEETGVKFFLNSELLEAN 210 (367)
T ss_dssp HSEEEE-----------EECSHHHHHHHHHHHHTTCEEEEECSSSCCTT-CCHHHHHHHHHHHHHTTEEEECSCCEEEEC
T ss_pred CCcEEE-----------ECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc-CCHHHHHHHHHHHHHCCCEEEcCCEEEEEE
Confidence 234444 79999999999999999999999999988766 2211 455577899998
Q ss_pred CCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----cc-ccccc
Q psy12350 314 PTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-----PF-LHESC 387 (1129)
Q Consensus 314 ~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-----~~-~~~~~ 387 (1129)
.++|.++||+ +++|.||+|+|++++.++++ ..++..+....++-+.+ ++.|++|++|..... ++ .....
T Consensus 211 ~~~v~~~~g~-i~~D~vi~a~G~~p~~~ll~-~~gl~~~~gi~Vd~~~~---t~~~~IyA~GD~a~~~~~~~~~~~~A~~ 285 (367)
T 1xhc_A 211 EEGVLTNSGF-IEGKVKICAIGIVPNVDLAR-RSGIHTGRGILIDDNFR---TSAKDVYAIGDCAEYSGIIAGTAKAAME 285 (367)
T ss_dssp SSEEEETTEE-EECSCEEEECCEEECCHHHH-HTTCCBSSSEECCTTSB---CSSTTEEECGGGEEBTTBCCCSHHHHHH
T ss_pred eeEEEECCCE-EEcCEEEECcCCCcCHHHHH-hCCCCCCCCEEECCCcc---cCCCCEEEeEeeeecCCCCccHHHHHHH
Confidence 7789999998 99999999999999988765 34455432212222222 478999999987421 11 12237
Q ss_pred ceeeehhhccc
Q psy12350 388 GIKVVNKNVQP 398 (1129)
Q Consensus 388 ~~~~~a~~~~~ 398 (1129)
|++.+|.++.+
T Consensus 286 qg~~aa~~i~g 296 (367)
T 1xhc_A 286 QARVLADILKG 296 (367)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 88888888764
No 52
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=99.85 E-value=9.8e-22 Score=235.32 Aligned_cols=306 Identities=14% Similarity=0.104 Sum_probs=181.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCC-CceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGS-GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~-~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
+||+|||||+||++||.+|++..+ |++|+|||+++ +||+|.+ .+ |.....+.... .....+..+..+.
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~---~g-----~~psk~l~~~a--~~~~~~~~~~~~g 71 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVL---DD-----CVPSKTFIAST--GLRTELRRAPHLG 71 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHH---TS-----HHHHHHHHHHH--HHHHHHTTTTTTT
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccC---cC-----ccchHHHHHHH--HHHHHHHHHHhCC
Confidence 799999999999999999999522 79999999987 9999984 12 21111111100 0000111122222
Q ss_pred CCCCCCCCCCCHHHHHH-----------HHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLE-----------YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~-----------yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++........+...+.. ++.++.++.++ .++.++ ++.+++... .+...+.+.. ..++.....||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~-~~~i~~~~~-~~~~~~~V~~-~~g~~~~~~~d 146 (499)
T 1xdi_A 72 FHIDFDDAKISLPQIHARVKTLAAAQSADITAQLLSMGV--QVIAGR-GELIDSTPG-LARHRIKATA-ADGSTSEHEAD 146 (499)
T ss_dssp BC------CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESE-EEECCSSSC-CSSEEEEEEC-TTSCEEEEEES
T ss_pred CccccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeE-EEEecCccc-CCCCEEEEEe-CCCcEEEEEeC
Confidence 21000111123444433 34555566665 666665 555543100 0013344432 12211257899
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+||+||| +.|..|++||..... ..+.
T Consensus 147 -----~lviATG--s~p~~p~i~g~~~~~------------------v~~~----------------------------- 172 (499)
T 1xdi_A 147 -----VVLVATG--ASPRILPSAQPDGER------------------ILTW----------------------------- 172 (499)
T ss_dssp -----EEEECCC--EEECCCGGGCCCSSS------------------EEEG-----------------------------
T ss_pred -----EEEEcCC--CCCCCCCCCCCCcCc------------------EEeh-----------------------------
Confidence 9999999 788888876621100 0000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
.....+. ...++++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -++
T Consensus 173 ~~~~~~~-~~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~GV~i 240 (499)
T 1xdi_A 173 RQLYDLD-ALPDHLIV-----------VGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEESFAERGVRL 240 (499)
T ss_dssp GGGGGCS-SCCSSEEE-----------ESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHHHHHHTTCEE
T ss_pred hHhhhhh-ccCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 0000010 01233443 799999999999999999999999999887653221 145
Q ss_pred EEcCCceEEcCCc----eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 304 VKKPDIAELTPTG----VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 304 ~~~~~v~~~~~~~----v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..++.|+++++++ |.+.+|+++++|.||+|+|++++.++|. +..++.++++..+....++ -+++|++|++|...
T Consensus 241 ~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~ 319 (499)
T 1xdi_A 241 FKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVS-RTLATGIYAAGDCT 319 (499)
T ss_dssp ETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSS-BCSSTTEEECSGGG
T ss_pred EeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCc-ccCCCCEEEEeccC
Confidence 5677888886442 4557888899999999999999998842 3566777654433333332 25789999999885
Q ss_pred ccc-c-cccccceeeehhhccc
Q psy12350 379 RYP-F-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 379 ~~~-~-~~~~~~~~~~a~~~~~ 398 (1129)
..| + .....||+.+|.++.+
T Consensus 320 ~~~~l~~~A~~~g~~aa~~i~g 341 (499)
T 1xdi_A 320 GLLPLASVAAMQGRIAMYHALG 341 (499)
T ss_dssp TSCSCHHHHHHHHHHHHHHHTT
T ss_pred CCcccHHHHHHHHHHHHHHhcC
Confidence 432 1 1223777777777764
No 53
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=99.85 E-value=6.5e-22 Score=222.35 Aligned_cols=277 Identities=14% Similarity=0.162 Sum_probs=165.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||||||+||.+|++ .|++|+|||| +.+||+|.+. +| ++ .++.+
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~--~g~~V~liE~-~~~gG~~~~~---~~----------i~------------~~p~~- 56 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASR--ANLKTVMIER-GIPGGQMANT---EE----------VE------------NFPGF- 56 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SCTTGGGGGC---SC----------BC------------CSTTC-
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEec-CCCCCeeecc---cc----------cC------------CcCCc-
Confidence 4899999999999999999999 6699999999 5699998741 11 11 11111
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
......++.........+.+. .+..+..+...... ....+ ......+.|| +|||||
T Consensus 57 -------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~------~~~~~----~~~~~~~~~d-----~liiAt 112 (312)
T 4gcm_A 57 -------EMITGPDLSTKMFEHAKKFGA--VYQYGDIKSVEDKG------EYKVI----NFGNKELTAK-----AVIIAT 112 (312)
T ss_dssp -------SSBCHHHHHHHHHHHHHHTTC--EEEECCCCEEEECS------SCEEE----ECSSCEEEEE-----EEEECC
T ss_pred -------cccchHHHHHHHHHHHhhccc--cccceeeeeeeeee------cceee----ccCCeEEEec-----eeEEcc
Confidence 233556666666666666544 34444444332221 01111 1223456788 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... +.++ +.+.... .+... ...
T Consensus 113 G--s~~~~~~ipG~~~--~~~~-------------~v~~~~~---------------------------~~~~~---~~~ 145 (312)
T 4gcm_A 113 G--AEYKKIGVPGEQE--LGGR-------------GVSYCAV---------------------------CDGAF---FKN 145 (312)
T ss_dssp C--EEECCCCCTTTTT--TBTT-------------TEESCHH---------------------------HHGGG---GTT
T ss_pred c--CccCcCCCCChhh--hCCc-------------cEEeeec---------------------------cCccc---cCC
Confidence 9 8899999988422 1110 1100000 00111 123
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------CCeEEcC--CceEEc--CC--
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-------NNVVKKP--DIAELT--PT-- 315 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-------~~i~~~~--~v~~~~--~~-- 315 (1129)
++++| ||||++|+|+|..|++.|.+||+++|.+.+++.... ..+.... .+.... +.
T Consensus 146 k~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (312)
T 4gcm_A 146 KRLFV-----------IGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKV 214 (312)
T ss_dssp CEEEE-----------ECCSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEEETTEE
T ss_pred CEEEE-----------ECCCHHHHHHHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeeecceeeeecccccc
Confidence 44444 799999999999999999999999999877643211 1121111 111111 11
Q ss_pred c---e-EEc--CCCEeecCEEEEcccccccCCCCCCCCCeEeecCc--ccccccccccCCCCCeEEeccccccc---ccc
Q psy12350 316 G---V-RFQ--DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKN--VQPLYKHLINIEHPSMCIIGYTYRYP---FLH 384 (1129)
Q Consensus 316 ~---v-~~~--dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~--~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~ 384 (1129)
+ . ... ++..+++|.|++++|.+++..++.. .++.. ++. .++-+. -++.|++|.+|.....+ ...
T Consensus 215 ~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~~~~~-~g~~~-~~G~I~vd~~~---~Ts~pgIyA~GDv~~~~~~~~~~ 289 (312)
T 4gcm_A 215 GSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKD-LGITN-DVGYIVTKDDM---TTSVPGIFAAGDVRDKGLRQIVT 289 (312)
T ss_dssp EEEEEEETTTCCEEEEECSEEEECSCEEESCGGGGG-GTCBC-TTSCBCCCTTS---BCSSTTEEECSTTBSCSCCSHHH
T ss_pred ccceeeeecCCceeEEeeeeEEeecCCCcCchhHHh-cceec-CCCeEeeCCCC---ccCCCCEEEEeecCCCcchHHHH
Confidence 0 1 112 2346799999999999999888763 33332 222 222222 26789999999875321 122
Q ss_pred cccceeeehhhcccccc
Q psy12350 385 ESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 385 ~~~~~~~~a~~~~~~~~ 401 (1129)
+..|++.+|+++..++.
T Consensus 290 A~~~G~~AA~~i~~~L~ 306 (312)
T 4gcm_A 290 ATGDGSIAAQSAAEYIE 306 (312)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33788888887765543
No 54
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=99.85 E-value=7e-23 Score=244.14 Aligned_cols=130 Identities=18% Similarity=0.128 Sum_probs=102.5
Q ss_pred ccccccCCCCCcCcCCCChHHHHHHHH----hcccceecCCCCCcceecccCCCC--------------C----cceEEE
Q psy12350 434 YKHLINIDHPSMCIIGIPGDTVVFYMF----DLQDKIRPGRGNPRPSACEADALP--------------T----NLTRLT 491 (1129)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~e~~~y~~----~~~~~i~~~~~~~~v~~~~~~~~~--------------~----~~~~~~ 491 (1129)
+.+.++++|+++..+|++|.||.+||+ ++..+|+|+++|++|+..+++... + ...+++
T Consensus 126 ~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~ 205 (501)
T 4b63_A 126 HQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRK 205 (501)
T ss_dssp HHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEE
T ss_pred HHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCE
Confidence 345667788889999999999999999 566679997777777655433210 1 123466
Q ss_pred EEEcccCCCCCCCCCCCCCCCcCCcEEecCCCCC------CCCCCCCeEEEEccCcchhhhHHHhhcc--cCeEEEEEEe
Q psy12350 492 YIISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRT------PEPFAGKRAVVVGSGPSGLDITHDISTE--ATTVSAYLRF 563 (1129)
Q Consensus 492 ~v~atG~~~~p~~p~~~g~~~f~g~v~hs~~~~~------~~~~~~k~v~ViG~g~sa~~~~~~l~~~--~~~v~~~~r~ 563 (1129)
||+||| ..|++|++ ..|.|+++||++|.+ ..+++||||+|||+|+||+|++.+|++. +++|+|++|+
T Consensus 206 vVlatG--~~P~iP~~---~~~~g~v~Hss~y~~~~~~~~~~~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~~v~~~~R~ 280 (501)
T 4b63_A 206 VVIAIG--GTAKMPSG---LPQDPRIIHSSKYCTTLPALLKDKSKPYNIAVLGSGQSAAEIFHDLQKRYPNSRTTLIMRD 280 (501)
T ss_dssp EEECCC--CEECCCTT---SCCCTTEEEGGGHHHHHHHHSCCTTSCCEEEEECCSHHHHHHHHHHHHHSTTCEEEEECSS
T ss_pred EEECcC--CCCCCCCC---CCCCcceeeccccccchhhccccccCCcEEEEECCcHHHHHHHHHHHhcCCCceEEEEeCC
Confidence 899999 66776654 457899999999975 4569999999999999999999999875 7899999999
Q ss_pred cceee
Q psy12350 564 DNKTI 568 (1129)
Q Consensus 564 ~~~~~ 568 (1129)
+++..
T Consensus 281 ~~~~p 285 (501)
T 4b63_A 281 SAMRP 285 (501)
T ss_dssp SSCCB
T ss_pred Ccccc
Confidence 98743
No 55
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=99.85 E-value=4.8e-22 Score=238.94 Aligned_cols=300 Identities=13% Similarity=0.125 Sum_probs=184.9
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS 85 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 85 (1129)
+...+||+|||||+||++||.+|++ .|++|+|||+++.+||+|.+ .+|. |.+...+... ....+..+.
T Consensus 40 ~~~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~---~g~~----p~k~l~~~~~---~~~~~~~~~ 107 (523)
T 1mo9_A 40 DPREYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFLGGSCPH---NACV----PHHLFSDCAA---ELMLARTFS 107 (523)
T ss_dssp CCSCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSCHHHH---HSHH----HHHHHHHHHH---HHHHHHHTT
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcccc---cCcC----chHHHHHHHH---HHHHHhhhh
Confidence 3445899999999999999999999 56899999998889999985 1210 1000000000 000001111
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHH-------HH-----HhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 86 GYHHKGHPDKSYIAANDVLEYLND-------FA-----DNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 86 d~~~~~~~~~~~~~~~~~~~yl~~-------~~-----~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
.|.+.......+++.+++.+++.. +. ++.++ .++++.+|+.++. +.+.+. ...
T Consensus 108 ~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~-------~~v~~~------g~~ 172 (523)
T 1mo9_A 108 GQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNL--EYILNCPAKVIDN-------HTVEAA------GKV 172 (523)
T ss_dssp TSTTCCCCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCC--CEEESSCCEEEET-------TEEEET------TEE
T ss_pred hcCcHHHHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCc--EEEEeeEEEEeeC-------CEEEEC------CEE
Confidence 222100112234557788877753 23 44555 5665667766643 233321 235
Q ss_pred EEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccc
Q psy12350 154 YLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYF 233 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 233 (1129)
..|| +||+||| +.|..|++||.... +. ..+..+
T Consensus 173 ~~~d-----~lViATG--s~p~~p~i~G~~~~---~v--------------~~~~~~----------------------- 205 (523)
T 1mo9_A 173 FKAK-----NLILAVG--AGPGTLDVPGVNAK---GV--------------FDHATL----------------------- 205 (523)
T ss_dssp EEBS-----CEEECCC--EECCCCCSTTTTSB---TE--------------EEHHHH-----------------------
T ss_pred EEeC-----EEEECCC--CCCCCCCCCCcccC---cE--------------eeHHHH-----------------------
Confidence 6789 9999999 78888888763210 00 000000
Q ss_pred ccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------------
Q psy12350 234 ESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP------------- 300 (1129)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~------------- 300 (1129)
. +.+....+++++| ||||++|+|+|..+++.|.+|+++++.+.+++...+
T Consensus 206 ----~--~~l~~~~g~~vvV-----------iGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~ 268 (523)
T 1mo9_A 206 ----V--EELDYEPGSTVVV-----------VGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQ 268 (523)
T ss_dssp ----H--HHCCSCCCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHT
T ss_pred ----H--HHHHhcCCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHhC
Confidence 0 0011011133433 899999999999999999999999999877653221
Q ss_pred -CCeEEcCCceEEcC--Cc------eEEcCCC-EeecCEEEEcccccccCC-CCCCCCCeEeecCcccccccccccCCCC
Q psy12350 301 -NNVVKKPDIAELTP--TG------VRFQDGS-YEQVDIILYCTGYTYRYP-FLHESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 301 -~~i~~~~~v~~~~~--~~------v~~~dg~-~~~~D~VI~atG~~~~~~-~l~~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
-++..++.|++++. ++ |.++||+ ++++|.||+|+|++++.+ +++ ..++.++++..+....++ -+++|
T Consensus 269 GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~-~~gl~~~~~G~i~Vd~~~-~t~~~ 346 (523)
T 1mo9_A 269 GMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAK-ILGLDLGPKGEVLVNEYL-QTSVP 346 (523)
T ss_dssp TCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHH-HHTCCBCTTSCBCCCTTS-BCSST
T ss_pred CcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHH-HcCCccCCCCCEEECCCC-ccCCC
Confidence 14556777888864 33 5677887 789999999999999988 665 344555544332222222 25789
Q ss_pred CeEEeccccccc-c-cccccceeeehhhccc
Q psy12350 370 SMCIIGYTYRYP-F-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 370 ~l~~~G~~~~~~-~-~~~~~~~~~~a~~~~~ 398 (1129)
++|++|.....| + .....||+.+|.++.+
T Consensus 347 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 377 (523)
T 1mo9_A 347 NVYAVGDLIGGPMEMFKARKSGCYAARNVMG 377 (523)
T ss_dssp TEEECGGGGCSSCSHHHHHHHHHHHHHHHTT
T ss_pred CEEEEeecCCCcccHHHHHHHHHHHHHHHcC
Confidence 999999875432 1 1223788888877764
No 56
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=99.85 E-value=2.9e-22 Score=238.98 Aligned_cols=304 Identities=15% Similarity=0.152 Sum_probs=177.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-------C--CcCceEecCCCCCCCCCCCCccCcccccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-------D--NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLP 78 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-------~--~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~ 78 (1129)
..+||+||||||||++||..|++ .|++|+|+||. . .+||+|.+ .+|. |.+...+.. ...
T Consensus 8 ~~~DvvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~~GG~c~~---~gci----Psk~l~~~~---~~~ 75 (483)
T 3dgh_A 8 YDYDLIVIGGGSAGLACAKEAVL--NGARVACLDFVKPTPTLGTKWGVGGTCVN---VGCI----PKKLMHQAS---LLG 75 (483)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTTTCCCCSSCHHHH---HSHH----HHHHHHHHH---HHH
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCEEEEEEeccccccccccCCcCCeecc---cCch----hhHHHHHHH---HHH
Confidence 45899999999999999999999 66999999942 1 38999984 2331 111111100 000
Q ss_pred ccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 79 KEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 79 ~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
........|.++.. ....++..++.++.+.+.+.+.......+ ...|+.+.......+.+.+.+.. ..+ ...+.||
T Consensus 76 ~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~-~~g-~~~~~~d 152 (483)
T 3dgh_A 76 EAVHEAAAYGWNVD-DKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKL-KSG-ERTITAQ 152 (483)
T ss_dssp HHHHHHHHTTBCCC-CCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEEC-TTC-CEEEEEE
T ss_pred HHHHHHHhcCcccC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEe-CCC-eEEEEcC
Confidence 00111111222111 11244677777777766654421000000 01121111111111223344432 112 1457899
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|++||.....+ .+..+
T Consensus 153 -----~lviATG--s~p~~p~i~G~~~~~~------------------~~~~~--------------------------- 180 (483)
T 3dgh_A 153 -----TFVIAVG--GRPRYPDIPGAVEYGI------------------TSDDL--------------------------- 180 (483)
T ss_dssp -----EEEECCC--EEECCCSSTTHHHHCB------------------CHHHH---------------------------
T ss_pred -----EEEEeCC--CCcCCCCCCCcccccC------------------cHHHH---------------------------
Confidence 9999999 8899998887421110 00000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
..... ..++++| ||+|++|+|+|..|++.|.+|++++|+. +++...+ -++
T Consensus 181 ~~~~~----~~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~-~l~~~d~~~~~~l~~~l~~~Gv~i 244 (483)
T 3dgh_A 181 FSLDR----EPGKTLV-----------VGAGYIGLECAGFLKGLGYEPTVMVRSI-VLRGFDQQMAELVAASMEERGIPF 244 (483)
T ss_dssp TTCSS----CCCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSC-SSTTSCHHHHHHHHHHHHHTTCCE
T ss_pred hhhhh----cCCcEEE-----------ECCCHHHHHHHHHHHHcCCEEEEEeCCC-CCcccCHHHHHHHHHHHHhCCCEE
Confidence 00001 1233333 7999999999999999999999999853 3332221 156
Q ss_pred EEcCCceEEcC--Cc---eEEcCCC-----EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 304 VKKPDIAELTP--TG---VRFQDGS-----YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 304 ~~~~~v~~~~~--~~---v~~~dg~-----~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
..+..|++++. ++ |.+.+++ ++++|.||+|+|++++.+++. +..++..++ ..+....++ .++.|++|
T Consensus 245 ~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~-~t~~~~Iy 322 (483)
T 3dgh_A 245 LRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQE-ATNVANIY 322 (483)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTC-BCSSTTEE
T ss_pred EeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCC-ccCCCCEE
Confidence 66777888863 32 6777664 679999999999999998873 345566655 433333332 36789999
Q ss_pred Eecccc-c----ccccccccceeeehhhccc
Q psy12350 373 IIGYTY-R----YPFLHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~-~----~~~~~~~~~~~~~a~~~~~ 398 (1129)
.+|... . ++.+. .|++.+|.++.+
T Consensus 323 A~GD~~~~~~~~~~~A~--~~g~~aa~~i~g 351 (483)
T 3dgh_A 323 AVGDIIYGKPELTPVAV--LAGRLLARRLYG 351 (483)
T ss_dssp ECSTTBTTSCCCHHHHH--HHHHHHHHHHHS
T ss_pred EEEcccCCCCccHHHHH--HHHHHHHHHHcC
Confidence 999874 2 22344 788888887764
No 57
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=99.85 E-value=9.9e-22 Score=234.15 Aligned_cols=297 Identities=15% Similarity=0.144 Sum_probs=178.5
Q ss_pred cceEEEEcCChHHHHHHHHhhc-CCCCceEEEEc--------ccCCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFE--------QTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E--------~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
.+||+||||||||++||.+|++ .| ++|+|+| +.+.+||+|.+ .+|. |.+...+.. ....
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~~G--~~V~liE~~~~~~~~~~~~~GG~c~~---~gci----Psk~l~~~a---~~~~ 70 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASLHK--KRVAVIDLQKHHGPPHYAALGGTCVN---VGCV----PKKLMVTGA---NYMD 70 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHHHC--CCEEEEESCSSSBTTTBSCTTCHHHH---HSHH----HHHHHHHHH---HHHH
T ss_pred cccEEEECCCHHHHHHHHHHHHHcC--CEEEEEecccccccccCCCcCccccC---CCcc----hhhHHHHHH---HHHH
Confidence 4799999999999999999998 65 8999999 35789999984 2221 111111110 0000
Q ss_pred cccccCCCCCCCCCCCC--CCCHHHHHHHHHHHH-----------Hhc-CCcceeEeceeeeeeccccccCCCCceEEec
Q psy12350 80 EIMELSGYHHKGHPDKS--YIAANDVLEYLNDFA-----------DNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIG 145 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~--~~~~~~~~~yl~~~~-----------~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~ 145 (1129)
.+.....|.+... .. ..+..++.++.+++. ++. ++ .++.++ ++.+++ ..+.+.+
T Consensus 71 ~~~~~~~~g~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv--~~~~g~-~~~i~~-------~~v~v~~ 138 (490)
T 1fec_A 71 TIRESAGFGWELD--RESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGL--TFHQGF-GALQDN-------HTVLVRE 138 (490)
T ss_dssp HHHHGGGGTEECC--GGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTE--EEEESE-EEEEET-------TEEEEES
T ss_pred HHHHHHhcCcccC--CcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--EEEEeE-EEEeeC-------CEEEEEe
Confidence 0001111111100 00 123344444433332 333 43 455554 444432 3344432
Q ss_pred c--ccCc-cceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCC
Q psy12350 146 I--PRDT-VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDES 222 (1129)
Q Consensus 146 ~--~~~~-~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (1129)
. .++. ...+.|| +||+||| +.|..|++||.. .+ ..+..+
T Consensus 139 ~~~~~g~~~~~~~~d-----~lviAtG--s~p~~p~i~g~~--~~-----------------~~~~~~------------ 180 (490)
T 1fec_A 139 SADPNSAVLETLDTE-----YILLATG--SWPQHLGIEGDD--LC-----------------ITSNEA------------ 180 (490)
T ss_dssp SSSTTSCEEEEEEEE-----EEEECCC--EEECCCCSBTGG--GC-----------------BCHHHH------------
T ss_pred eccCCCCceEEEEcC-----EEEEeCC--CCCCCCCCCCcc--ce-----------------ecHHHH------------
Confidence 1 0111 1457899 9999999 788888887631 00 000000
Q ss_pred CCCccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc---ccEEEEccccCCcccccC
Q psy12350 223 PVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE---ATTVFLSHHSEHVKKLRF 299 (1129)
Q Consensus 223 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~---~~~V~lv~r~~~~~~~~~ 299 (1129)
..... ..++++| ||||++|+|+|..|++. |.+|+++++.+.+++...
T Consensus 181 ---------------~~~~~----~~~~vvV-----------iGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d 230 (490)
T 1fec_A 181 ---------------FYLDE----APKRALC-----------VGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFD 230 (490)
T ss_dssp ---------------TTCSS----CCSEEEE-----------ECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSC
T ss_pred ---------------hhhhh----cCCeEEE-----------ECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccC
Confidence 00000 1233333 89999999999999999 999999999988765322
Q ss_pred CC--------------CeEEcCCceEEcCC-----ceEEcCCCEeecCEEEEcccccccCCCC-CCCCCeEeecCccccc
Q psy12350 300 PN--------------NVVKKPDIAELTPT-----GVRFQDGSYEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPL 359 (1129)
Q Consensus 300 ~~--------------~i~~~~~v~~~~~~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l 359 (1129)
++ ++..++.|++++.+ .|.++||+++++|.||+|+|++++.++| -+..++.++++..+..
T Consensus 231 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~V 310 (490)
T 1fec_A 231 SELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKV 310 (490)
T ss_dssp HHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEE
Confidence 21 46667888888643 3678899889999999999999999865 2345666665443333
Q ss_pred ccccccCCCCCeEEecccccc-cc-cccccceeeehhhccc
Q psy12350 360 YKHLINIEHPSMCIIGYTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 360 ~~~~~~~~~p~l~~~G~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
..++ .+++|++|.+|..... ++ .....|++.+|.++.+
T Consensus 311 d~~~-~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 350 (490)
T 1fec_A 311 DAYS-KTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFA 350 (490)
T ss_dssp CTTC-BCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHS
T ss_pred CCCC-ccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcC
Confidence 3332 2578999999987542 12 1223788888887764
No 58
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=99.85 E-value=3.2e-22 Score=240.05 Aligned_cols=308 Identities=14% Similarity=0.133 Sum_probs=175.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC--------CcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD--------NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~--------~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
..+||+||||||||++||..|++ .|++|+|+||++ .+||+|.+ .+|. |.+ .++... ....
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~---~Gci----Psk-~l~~~~--~~~~ 98 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQ--YGKKVMVLDFVTPTPLGTRWGLGGTCVN---VGCI----PKK-LMHQAA--LLGQ 98 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTCHHHH---HSHH----HHH-HHHHHH--HHHH
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCccccccCCCcccccCC---cCcc----chH-HHHHHH--HHHH
Confidence 35799999999999999999999 669999999964 79999984 2221 111 111100 0111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
....+.+|.++.. .....+...+.++.+.+.+.+.......+ ...|+-+.......+.+.+.+.+ .+++...+.||
T Consensus 99 ~~~~~~~~g~~~~-~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~-~~g~~~~i~~d- 175 (519)
T 3qfa_A 99 ALQDSRNYGWKVE-ETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATN-NKGKEKIYSAE- 175 (519)
T ss_dssp HHHHHHHTTBCCC-SSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEEC-TTCCCCEEEEE-
T ss_pred HHHHHHhcCcccC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEc-CCCCEEEEECC-
Confidence 1112222322211 11245677777777766554321000000 01121111111112234444443 22333467899
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+|||||| +.|..|++||.....+ .+..+ .
T Consensus 176 ----~lViATG--s~p~~p~i~G~~~~~~------------------t~~~~---------------------------~ 204 (519)
T 3qfa_A 176 ----RFLIATG--ERPRYLGIPGDKEYCI------------------SSDDL---------------------------F 204 (519)
T ss_dssp ----EEEECCC--EEECCCCCTTHHHHCB------------------CHHHH---------------------------T
T ss_pred ----EEEEECC--CCcCCCCCCCccCceE------------------cHHHH---------------------------h
Confidence 9999999 8899998887321100 00000 0
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~ 304 (1129)
.... ..++++| ||||++|+|+|..|++.|.+||+++|+ .+++..+++ ++.
T Consensus 205 ~l~~----~~~~vvV-----------IGgG~ig~E~A~~l~~~G~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~GV~v~ 268 (519)
T 3qfa_A 205 SLPY----CPGKTLV-----------VGASYVALECAGFLAGIGLDVTVMVRS-ILLRGFDQDMANKIGEHMEEHGIKFI 268 (519)
T ss_dssp TCSS----CCCSEEE-----------ECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred hhhh----cCCeEEE-----------ECCcHHHHHHHHHHHHcCCeEEEEecc-cccccCCHHHHHHHHHHHHHCCCEEE
Confidence 0001 1234443 799999999999999999999999985 444332211 344
Q ss_pred EcCCceEE---cC---Cc--eEE--cCCC---EeecCEEEEcccccccCCCCC-CCCCeEee-cCcccccccccccCCCC
Q psy12350 305 KKPDIAEL---TP---TG--VRF--QDGS---YEQVDIILYCTGYTYRYPFLH-ESCGIKVV-NKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 305 ~~~~v~~~---~~---~~--v~~--~dg~---~~~~D~VI~atG~~~~~~~l~-~~~~~~~~-~~~~~~l~~~~~~~~~p 369 (1129)
.+..++++ ++ +. +.+ .+|+ ++++|.||+|+|++++.++|. +..++..+ ++..+....++ .++.|
T Consensus 269 ~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~-~Ts~~ 347 (519)
T 3qfa_A 269 RQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEE-QTNVP 347 (519)
T ss_dssp ESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTS-BCSST
T ss_pred eCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCC-ccCCC
Confidence 44444444 32 22 222 4563 458999999999999998852 34566665 33333333332 25789
Q ss_pred CeEEecccc-c-ccc-cccccceeeehhhccc
Q psy12350 370 SMCIIGYTY-R-YPF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 370 ~l~~~G~~~-~-~~~-~~~~~~~~~~a~~~~~ 398 (1129)
++|++|... . .++ .....|++.+|.++.+
T Consensus 348 ~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g 379 (519)
T 3qfa_A 348 YIYAIGDILEDKVELTPVAIQAGRLLAQRLYA 379 (519)
T ss_dssp TEEECGGGBSSSCCCHHHHHHHHHHHHHHHHS
T ss_pred CEEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 999999875 2 222 1223788888887764
No 59
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=99.84 E-value=1.4e-21 Score=231.11 Aligned_cols=282 Identities=15% Similarity=0.181 Sum_probs=173.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+||++||..|++.+++.+|+|+|+++.+|.... ..+.|.. .... ....
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~--------------~~~~~~~--g~~~--~~~~----- 57 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSC--------------GIALYLG--KEIK--NNDP----- 57 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGG--------------GHHHHHT--TCBG--GGCG-----
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccc--------------cchhhhc--CCcc--cCCH-----
Confidence 489999999999999999999655899999999876542110 0000100 0000 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
+++..++.++.+++++ .++++++|+.++. +...+.+.+...++.....|| +||+|||
T Consensus 58 -----------~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~-----~~~~v~v~~~~~g~~~~~~~d-----~lviAtG 114 (452)
T 2cdu_A 58 -----------RGLFYSSPEELSNLGA--NVQMRHQVTNVDP-----ETKTIKVKDLITNEEKTEAYD-----KLIMTTG 114 (452)
T ss_dssp -----------GGGBSCCHHHHHHTTC--EEEESEEEEEEEG-----GGTEEEEEETTTCCEEEEECS-----EEEECCC
T ss_pred -----------HHhhhcCHHHHHHcCC--EEEeCCEEEEEEc-----CCCEEEEEecCCCceEEEECC-----EEEEccC
Confidence 0011111233345566 7888999988875 233455543222334567899 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccc-c-cc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT-E-FR 247 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~-~-~~ 247 (1129)
+.|..|++||.... +. . ....+ .+...+. . ..
T Consensus 115 --s~p~~p~i~g~~~~---~v---------~-----~~~~~---------------------------~~~~~~~~~~~~ 148 (452)
T 2cdu_A 115 --SKPTVPPIPGIDSS---RV---------Y-----LCKNY---------------------------NDAKKLFEEAPK 148 (452)
T ss_dssp --EEECCCCCTTTTST---TE---------E-----ECSSH---------------------------HHHHHHHHHGGG
T ss_pred --CCcCCCCCCCCCCC---CE---------E-----EeCcH---------------------------HHHHHHHHHhcc
Confidence 88888888773210 00 0 00000 0001110 0 01
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEE
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAEL 312 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~ 312 (1129)
.++++| ||+|++|+|+|..|++.|.+|+++++.+.+++..++ -++..++.|+++
T Consensus 149 ~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i 217 (452)
T 2cdu_A 149 AKTITI-----------IGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAF 217 (452)
T ss_dssp CSEEEE-----------ECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEE
T ss_pred CCeEEE-----------ECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEE
Confidence 233333 899999999999999999999999999877662221 156677889988
Q ss_pred cC-Cc-e--EEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc-------
Q psy12350 313 TP-TG-V--RFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP------- 381 (1129)
Q Consensus 313 ~~-~~-v--~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~------- 381 (1129)
++ ++ + +..||+++++|.||+|+|++++.++++. . +.++++..+....++ .+++|++|++|.....+
T Consensus 218 ~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~ll~~-~-l~~~~~G~i~Vd~~~-~t~~~~IyA~GD~~~~~~~~~g~~ 294 (452)
T 2cdu_A 218 EEVDDEIITKTLDGKEIKSDIAILCIGFRPNTELLKG-K-VAMLDNGAIITDEYM-HSSNRDIFAAGDSAAVHYNPTNSN 294 (452)
T ss_dssp EEETTEEEEEETTSCEEEESEEEECCCEEECCGGGTT-T-SCBCTTSCBCCCTTS-BCSSTTEEECSTTBCEEETTTTEE
T ss_pred EcCCCeEEEEEeCCCEEECCEEEECcCCCCCHHHHHH-h-hhcCCCCCEEECCCc-CcCCCCEEEcceEEEeccccCCCe
Confidence 75 32 3 3458888999999999999999998864 3 555544433222222 24789999999875421
Q ss_pred ----c-cccccceeeehhhcc
Q psy12350 382 ----F-LHESCGIKVVNKNVQ 397 (1129)
Q Consensus 382 ----~-~~~~~~~~~~a~~~~ 397 (1129)
+ .....|++.+|.++.
T Consensus 295 ~~~~~~~~A~~~g~~aa~~i~ 315 (452)
T 2cdu_A 295 AYIPLATNAVRQGRLVGLNLT 315 (452)
T ss_dssp ECCCCHHHHHHHHHHHHHTSS
T ss_pred eecchHHHHHHHHHHHHHHhC
Confidence 1 122366666666665
No 60
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=99.84 E-value=2e-21 Score=230.56 Aligned_cols=291 Identities=13% Similarity=0.092 Sum_probs=176.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||||||+||..|++ .|++|+|+|| +.+||+|.+ .+|. |.+...+.. ..+.....++.|.
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~--~G~~V~liEk-~~~GG~~~~---~gci----p~k~l~~~~---~~~~~~~~~~~~g 71 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAA--LGKKVAIAEE-FRYGGTCVI---RGCV----PKKLYVYAS---QFAEHFEDAAGFG 71 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT--TTCCEEEEES-SCTTHHHHH---HSHH----HHHHHHHHH---HHHHHHHHGGGGT
T ss_pred CCcEEEECcCHHHHHHHHHHHh--CCCEEEEEeC-CCCCCcccc---cCch----hhHHHHHHH---HHHHHHHHHHhcC
Confidence 4799999999999999999999 6699999999 789999984 2221 111100100 0111111222222
Q ss_pred CCCCCCCCCCCHHHHHHHHH-----------HHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLN-----------DFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~-----------~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++.. ....+..++.++.+ .+.++.++ .+..+ ++..++ .+.+.+. .......||
T Consensus 72 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g-~~~~i~-------~~~v~~~----~~~~~~~~d 135 (463)
T 4dna_A 72 WTVG--ESRFDWAKLVAAKEQEIARLEGLYRKGLANAGA--EILDT-RAELAG-------PNTVKLL----ASGKTVTAE 135 (463)
T ss_dssp EEEC--CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEES-CEEESS-------SSEEEET----TTTEEEEEE
T ss_pred cccC--CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEE-EEEEee-------CCEEEEe----cCCeEEEeC
Confidence 1100 01123333333333 33333333 33333 333332 2333331 123456788
Q ss_pred ceeeeEEEEecccCCCCC-ccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPS-KAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~-~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+||+||| +.|. .|++||... + ..+..+
T Consensus 136 -----~lviAtG--~~p~~~p~i~G~~~--~-----------------~~~~~~-------------------------- 163 (463)
T 4dna_A 136 -----RIVIAVG--GHPSPHDALPGHEL--C-----------------ITSNEA-------------------------- 163 (463)
T ss_dssp -----EEEECCC--EEECCCTTSTTGGG--C-----------------BCHHHH--------------------------
T ss_pred -----EEEEecC--CCcccCCCCCCccc--c-----------------ccHHHH--------------------------
Confidence 9999999 7888 888876210 0 000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CC
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NN 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~ 302 (1129)
..... ..++++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ -+
T Consensus 164 -~~~~~----~~~~v~V-----------iGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~ 227 (463)
T 4dna_A 164 -FDLPA----LPESILI-----------AGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIR 227 (463)
T ss_dssp -TTCSS----CCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred -hhhhc----CCCeEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCE
Confidence 00001 1233333 899999999999999999999999999876643222 14
Q ss_pred eEEcCCceEEcCC-----ceE-EcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 303 VVKKPDIAELTPT-----GVR-FQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 303 i~~~~~v~~~~~~-----~v~-~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
+..++.|++++.+ .|. ++||+ +++|.||+|+|++++.++|. +..++.++++..+....++- ++.|++|++|
T Consensus 228 i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~~-t~~~~iya~G 305 (463)
T 4dna_A 228 ILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFSR-TSTPGIYALG 305 (463)
T ss_dssp EECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTCB-CSSTTEEECS
T ss_pred EECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCCC-CCCCCEEEEE
Confidence 5567788888643 366 77887 99999999999999999852 34567776655443333322 6889999999
Q ss_pred ccccc-cc-cccccceeeehhhccc
Q psy12350 376 YTYRY-PF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 376 ~~~~~-~~-~~~~~~~~~~a~~~~~ 398 (1129)
..... ++ .....|++.+|.++.+
T Consensus 306 D~~~~~~~~~~A~~~g~~aa~~i~g 330 (463)
T 4dna_A 306 DVTDRVQLTPVAIHEAMCFIETEYK 330 (463)
T ss_dssp GGGSSCCCHHHHHHHHHHHHHHHHS
T ss_pred ecCCCCCChHHHHHHHHHHHHHHcC
Confidence 87542 22 1234888888888765
No 61
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=99.84 E-value=2.4e-21 Score=224.18 Aligned_cols=276 Identities=15% Similarity=0.214 Sum_probs=175.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||+||++||..|++.|...+|+|+|+++ |+.|.. +.+.. . +.
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~---------------~~l~~-------~---~~--- 53 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSK---------------PMLST-------G---FS--- 53 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECG---------------GGGGG-------T---TT---
T ss_pred CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCc---------------ccccH-------H---Hh---
Confidence 479999999999999999999977667899999965 443331 11111 0 00
Q ss_pred CCCCCCCCCCCHHHHH-HHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 89 HKGHPDKSYIAANDVL-EYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
......++. .+++.+++++++ .++++++|+.++. +.+.+.+. .....|| +||+|
T Consensus 54 -------~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~v~~i~~-----~~~~v~~~------~~~~~~d-----~lviA 108 (384)
T 2v3a_A 54 -------KNKDADGLAMAEPGAMAEQLNA--RILTHTRVTGIDP-----GHQRIWIG------EEEVRYR-----DLVLA 108 (384)
T ss_dssp -------TTCCHHHHEEECHHHHHHHTTC--EEECSCCCCEEEG-----GGTEEEET------TEEEECS-----EEEEC
T ss_pred -------CCCCHHHhhccCHHHHHHhCCc--EEEeCCEEEEEEC-----CCCEEEEC------CcEEECC-----EEEEe
Confidence 011223343 245666677776 6788888888875 23444431 1346789 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||.....+ .. +.. +..+....+.+ ..
T Consensus 109 tG--~~p~~p~i~g~~~~~v------------~~-----~~~-----------------------~~~~~~~~~~~--~~ 144 (384)
T 2v3a_A 109 WG--AEPIRVPVEGDAQDAL------------YP-----IND-----------------------LEDYARFRQAA--AG 144 (384)
T ss_dssp CC--EEECCCCCBSTTTTCE------------EE-----CSS-----------------------HHHHHHHHHHH--TT
T ss_pred CC--CCcCCCCCCCcCcCCE------------EE-----ECC-----------------------HHHHHHHHHhh--cc
Confidence 99 7888888877321100 00 000 00000000001 01
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEE
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAEL 312 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~ 312 (1129)
.++++| ||+|++|+|+|..|++.|.+|+++++.+.+++...+ -++.....|+++
T Consensus 145 ~~~v~V-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i 213 (384)
T 2v3a_A 145 KRRVLL-----------LGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASL 213 (384)
T ss_dssp CCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEE
T ss_pred CCeEEE-----------ECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 233333 899999999999999999999999998876553221 145667788888
Q ss_pred cCC----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc-----cc-
Q psy12350 313 TPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY-----PF- 382 (1129)
Q Consensus 313 ~~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~-----~~- 382 (1129)
+.+ .|.++||+++++|.||+|+|++++.++++ ..++.++. . +....+ +.+++|++|++|..... ++
T Consensus 214 ~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~l~~-~~g~~~~~-g-i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~ 289 (384)
T 2v3a_A 214 KKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTELAF-AAGLAVNR-G-IVVDRS-LRTSHANIYALGDCAEVDGLNLLYV 289 (384)
T ss_dssp EEETTEEEEEETTSCEEEESEEEECSCEEECCHHHH-HTTCCBSS-S-EEECTT-CBCSSTTEEECGGGEEETTBCCCSH
T ss_pred EecCCEEEEEECCCCEEECCEEEECcCCCcCHHHHH-HCCCCCCC-C-EEECCC-CCCCCCCEEEeeeeeeECCCCcchH
Confidence 642 37788999999999999999999987764 34455542 2 222222 22678999999987521 11
Q ss_pred cccccceeeehhhccc
Q psy12350 383 LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 383 ~~~~~~~~~~a~~~~~ 398 (1129)
.....||+.+|.++.+
T Consensus 290 ~~a~~~g~~~a~~i~g 305 (384)
T 2v3a_A 290 MPLMACARALAQTLAG 305 (384)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcC
Confidence 1123677777776653
No 62
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.84 E-value=1.8e-21 Score=231.54 Aligned_cols=298 Identities=14% Similarity=0.152 Sum_probs=171.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCC---ceEEEEcccCCcCceEecCCC-CCCCCCCCCccCcccccc-cccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSG---FTCTTFEQTDNVGGTWVYTEQ-TGRDQYGLPVHSSMYKSL-KTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~---~~v~v~E~~~~~GG~w~~~~~-~~~~~~~~~~~~~~y~~l-~~~~~~~~~~ 83 (1129)
.++|+|||||||||+||..|++.|.. .+|+||||++.+| |..... +++ ....+.+..+ ....+...+.
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g--~~~~~~~~~~-----~~~~~~~~~l~~~~~p~~~~~ 102 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYR--WHGNTLVSQS-----ELQISFLKDLVSLRNPTSPYS 102 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCC--SSGGGCCSSC-----BCSSCTTSSSSTTTCTTCTTS
T ss_pred cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCC--CcCCCCCCCC-----cCCcchhhccccccCCCCCCC
Confidence 35899999999999999999994322 8999999999887 442100 111 0000001100 0011111111
Q ss_pred cCCCCCC-------CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc-CccceEE
Q psy12350 84 LSGYHHK-------GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR-DTVGFYL 155 (1129)
Q Consensus 84 ~~d~~~~-------~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~ 155 (1129)
|.+|... ......++.+.++.+|++.++++++. .++++++|+.++........|.+.+..... ++...+.
T Consensus 103 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~ 180 (463)
T 3s5w_A 103 FVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQE--QSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRT 180 (463)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTT--TEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEE
T ss_pred hhHhhhhcCceeecccccCCCCCHHHHHHHHHHHHHHcCC--eEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEE
Confidence 1110000 00123467889999999999999875 899999999998642112335445543222 2222567
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +||+||| +.|.+|+... .+.+. ....++..+.
T Consensus 181 ~d-----~lVlAtG--~~p~~p~~~~----~~~~~-----------~~~~~~~~~~------------------------ 214 (463)
T 3s5w_A 181 TR-----ALVVSPG--GTPRIPQVFR----ALKGD-----------GRVFHHSQYL------------------------ 214 (463)
T ss_dssp ES-----EEEECCC--CEECCCGGGG----GGTTC-----------TTEEEGGGHH------------------------
T ss_pred eC-----EEEECCC--CCCCCcchhh----hcCCC-----------CcEEECHHHH------------------------
Confidence 88 9999999 5777775310 11110 0011111110
Q ss_pred ccccccccc--cccccceeEeeceeeeecCCCCCCCCcccchhhhccc--ccEEEEccccCCccccc-------------
Q psy12350 236 FARCSEDFT--EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE--ATTVFLSHHSEHVKKLR------------- 298 (1129)
Q Consensus 236 ~~~~~~~~~--~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~--~~~V~lv~r~~~~~~~~------------- 298 (1129)
...+.+. ....++++ | ||||.+|+|+|..|++. +.+|++++|++.+++..
T Consensus 215 --~~~~~~~~~~~~~~~vv-------V----vGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~ 281 (463)
T 3s5w_A 215 --EHMAKQPCSSGKPMKIA-------I----IGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKF 281 (463)
T ss_dssp --HHHCC-------CEEEE-------E----ECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHH
T ss_pred --hhHHHhhhcccCCCeEE-------E----ECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhH
Confidence 0011110 00123333 3 89999999999999999 99999999998664311
Q ss_pred -----------------------------------------------CCCCeEEcCCceEEcCC--c--eEEc---CCCE
Q psy12350 299 -----------------------------------------------FPNNVVKKPDIAELTPT--G--VRFQ---DGSY 324 (1129)
Q Consensus 299 -----------------------------------------------~~~~i~~~~~v~~~~~~--~--v~~~---dg~~ 324 (1129)
..-++..++.|++++.+ + |.+. +|+.
T Consensus 282 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~ 361 (463)
T 3s5w_A 282 TDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGEL 361 (463)
T ss_dssp HHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCE
T ss_pred HHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCe
Confidence 01123445567777543 2 6666 7765
Q ss_pred --eecCEEEEccccccc--CCCCCCC----CCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 325 --EQVDIILYCTGYTYR--YPFLHES----CGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 325 --~~~D~VI~atG~~~~--~~~l~~~----~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
+++|.||+|||++++ .++|..- .++.++.+...... ...+|++|.+|...
T Consensus 362 ~~~~~D~Vv~AtG~~p~~~~~~l~~l~~~~g~i~v~~~~~~~~~----~~~~~~Ifa~G~~~ 419 (463)
T 3s5w_A 362 SVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTD----ERCKVAIYAQGFSQ 419 (463)
T ss_dssp EEEEESEEEECCCEECCC-CTTTGGGGGGBC--CCCTTSBCCBC----TTBCSEEEESSCCH
T ss_pred EEEECCEEEEeeCCCCCCccchhHHHHHHhCCcccCcccccccC----CCCCCeEEEcCCCc
Confidence 799999999999998 6777631 22334433222111 11267799998753
No 63
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=99.84 E-value=8.3e-22 Score=229.52 Aligned_cols=258 Identities=12% Similarity=0.128 Sum_probs=160.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||+||++||.+|++.|...+|+|||+++.++ |. +..+++...... ..
T Consensus 2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~----------------------y~--~~~l~~~~l~~~-~~- 55 (404)
T 3fg2_P 2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP----------------------YQ--RPPLSKAYLKSG-GD- 55 (404)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSS----------------------BC--SGGGGTGGGGSC-CC-
T ss_pred CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCC----------------------CC--CccCCHHHHCCC-CC-
Confidence 68999999999999999999966545999999987432 11 001111111100 00
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
... +..+...+..+.++ .++. ++|+.+++ +.+.+... ......|| +||+|||
T Consensus 56 ----~~~------~~~~~~~~~~~~~i--~~~~-~~v~~id~-----~~~~v~~~-----~g~~~~~d-----~lvlAtG 107 (404)
T 3fg2_P 56 ----PNS------LMFRPEKFFQDQAI--ELIS-DRMVSIDR-----EGRKLLLA-----SGTAIEYG-----HLVLATG 107 (404)
T ss_dssp ----TTS------SBSSCHHHHHHTTE--EEEC-CCEEEEET-----TTTEEEES-----SSCEEECS-----EEEECCC
T ss_pred ----HHH------ccCCCHHHHHhCCC--EEEE-EEEEEEEC-----CCCEEEEC-----CCCEEECC-----EEEEeeC
Confidence 000 00111233344555 6666 88888876 33333321 22456799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||... .+ .+.... .+.+......+ ...+
T Consensus 108 --~~p~~~~i~g~~~---~~---------------v~~~~~----------------------~~d~~~l~~~~--~~~~ 143 (404)
T 3fg2_P 108 --ARNRMLDVPNASL---PD---------------VLYLRT----------------------LDESEVLRQRM--PDKK 143 (404)
T ss_dssp --EEECCCCSTTTTS---TT---------------EECCSS----------------------HHHHHHHHHHG--GGCS
T ss_pred --CCccCCCCCCCCC---Cc---------------EEEECC----------------------HHHHHHHHHHh--hcCC
Confidence 7888888877321 11 000000 00000000000 1123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAELTP 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~~~~ 314 (1129)
+++| ||+|.+|+|+|..+++.+.+|+++++.+.+++...+ -++..+..|+++++
T Consensus 144 ~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~ 212 (404)
T 3fg2_P 144 HVVV-----------IGAGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAA 212 (404)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE
T ss_pred eEEE-----------ECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEe
Confidence 4443 799999999999999999999999999877653222 14556778888865
Q ss_pred C-----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 315 T-----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 315 ~-----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
+ +|.++||+++++|.||+|+|++++.++++ ..++.++....++-+.+ +++|++|++|.....
T Consensus 213 ~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~~l~~-~~gl~~~~Gi~vd~~~~---t~~~~iya~GD~a~~ 279 (404)
T 3fg2_P 213 EGDRVTGVVLSDGNTLPCDLVVVGVGVIPNVEIAA-AAGLPTAAGIIVDQQLL---TSDPHISAIGDCALF 279 (404)
T ss_dssp ETTEEEEEEETTSCEEECSEEEECCCEEECCHHHH-HTTCCBSSSEEECTTSB---CSSTTEEECGGGEEE
T ss_pred cCCcEEEEEeCCCCEEEcCEEEECcCCccCHHHHH-hCCCCCCCCEEECCCcc---cCCCCEEEeecceee
Confidence 3 48889999999999999999999988875 34455543222222222 578999999987543
No 64
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=99.84 E-value=3.3e-22 Score=238.71 Aligned_cols=309 Identities=15% Similarity=0.140 Sum_probs=179.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcc--------cCCcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ--------TDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~--------~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
..+||+||||||||++||..|++ .|++|+|+|| ...+||+|.+ .+|. |.+ .++... ....
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~---~gci----Psk-~l~~~~--~~~~ 72 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQ--LGKKVAVADYVEPSPRGTKWGLGGTCVN---VGCI----PKK-LMHQAA--LLGG 72 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTSCCCCTTCHHHH---HSHH----HHH-HHHHHH--HHHH
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEEecccccccccCCcCCeecc---cCCc----ccH-HHHHHH--HHHH
Confidence 35899999999999999999999 5699999998 5679999984 2331 111 111100 0111
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.......|.+... ....+...++.++.+++.+++.......+ ...|+-+.......+.+.+.+.+ .++....+.||
T Consensus 73 ~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~-~~g~~~~~~~d- 149 (488)
T 3dgz_A 73 MIRDAHHYGWEVA-QPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVD-KGGKATLLSAE- 149 (488)
T ss_dssp HHHHHHHTTCCCC-SSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEEC-TTSCEEEEEEE-
T ss_pred HHHHHHhcCcccC-CcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEe-CCCceEEEECC-
Confidence 1112222322211 12345677777777666554421000000 01111111111112334455543 22233467899
Q ss_pred eeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+|||||| +.|..|+ +||.....+ .+..+
T Consensus 150 ----~lViATG--s~p~~p~~i~G~~~~~~------------------~~~~~--------------------------- 178 (488)
T 3dgz_A 150 ----HIVIATG--GRPRYPTQVKGALEYGI------------------TSDDI--------------------------- 178 (488)
T ss_dssp ----EEEECCC--EEECCCSSCBTHHHHCB------------------CHHHH---------------------------
T ss_pred ----EEEEcCC--CCCCCCCCCCCcccccC------------------cHHHH---------------------------
Confidence 9999999 8899998 887421110 00000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
. .+. ...++++| ||+|++|+|+|..|++.|.+||+++|.. +++...+ -++
T Consensus 179 ~---~~~-~~~~~vvV-----------iGgG~ig~E~A~~l~~~g~~Vtlv~~~~-~l~~~d~~~~~~l~~~l~~~gv~~ 242 (488)
T 3dgz_A 179 F---WLK-ESPGKTLV-----------VGASYVALECAGFLTGIGLDTTVMMRSI-PLRGFDQQMSSLVTEHMESHGTQF 242 (488)
T ss_dssp T---TCS-SCCCSEEE-----------ECCSHHHHHHHHHHHHTTCCEEEEESSC-SSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred H---hhh-hcCCeEEE-----------ECCCHHHHHHHHHHHHcCCceEEEEcCc-ccccCCHHHHHHHHHHHHHCCCEE
Confidence 0 000 01233443 7999999999999999999999999874 3332221 145
Q ss_pred EEcCCceEEcC---Cc--eEEcC---CC--EeecCEEEEcccccccCCCCC-CCCCeEee-cCcccccccccccCCCCCe
Q psy12350 304 VKKPDIAELTP---TG--VRFQD---GS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVV-NKNVQPLYKHLINIEHPSM 371 (1129)
Q Consensus 304 ~~~~~v~~~~~---~~--v~~~d---g~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~-~~~~~~l~~~~~~~~~p~l 371 (1129)
..+..+++++. +. |.+.+ |+ ++++|.||+|+|++++.++|. +..++..+ ++..+....++ .++.|++
T Consensus 243 ~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~-~t~~~~I 321 (488)
T 3dgz_A 243 LKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQE-ATSVPHI 321 (488)
T ss_dssp EETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTS-BCSSTTE
T ss_pred EeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCC-ccCCCCE
Confidence 55666777743 22 55654 55 368999999999999998853 23556665 44433333322 2578999
Q ss_pred EEecccc-ccc-c-cccccceeeehhhcccc
Q psy12350 372 CIIGYTY-RYP-F-LHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 372 ~~~G~~~-~~~-~-~~~~~~~~~~a~~~~~~ 399 (1129)
|++|... ..| + .....|++.+|.++.+.
T Consensus 322 yA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (488)
T 3dgz_A 322 YAIGDVAEGRPELTPTAIKAGKLLAQRLFGK 352 (488)
T ss_dssp EECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred EEeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence 9999874 222 1 12237888888887653
No 65
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=99.84 E-value=2.1e-21 Score=229.42 Aligned_cols=266 Identities=11% Similarity=0.150 Sum_probs=163.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
|||+|||||+||++||..|++.+++.+|+|+|+++.+|.. . | ..+.|. ....
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~------~-------~~~~~~------~~~~-------- 52 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFL-S------A-------GMQLYL------EGKV-------- 52 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBC-G------G-------GHHHHH------TTSS--------
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcc-c------c-------cchhhh------cCcc--------
Confidence 4899999999999999999996558999999998765411 0 0 000000 0000
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
.+.+++..++.+..+++++ .++++++|+.++. +...+.+.+...++.....|| +||+|||
T Consensus 53 --------~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~-----~~~~v~~~~~~~g~~~~~~~d-----~lviAtG 112 (447)
T 1nhp_A 53 --------KDVNSVRYMTGEKMESRGV--NVFSNTEITAIQP-----KEHQVTVKDLVSGEERVENYD-----KLIISPG 112 (447)
T ss_dssp --------CCGGGSBSCCHHHHHHTTC--EEEETEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEECCC
T ss_pred --------CCHHHhhcCCHHHHHHCCC--EEEECCEEEEEeC-----CCCEEEEEecCCCceEEEeCC-----EEEEcCC
Confidence 0001111112233345566 7888999988865 334455543222322346799 9999999
Q ss_pred cCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccccc
Q psy12350 170 HVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKD 249 (1129)
Q Consensus 170 ~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 249 (1129)
+.|..|++||... .+. .+...+ +.+....+.+.....+
T Consensus 113 --~~p~~p~i~G~~~---~~v--------------~~~~~~-----------------------~~~~~l~~~~~~~~~~ 150 (447)
T 1nhp_A 113 --AVPFELDIPGKDL---DNI--------------YLMRGR-----------------------QWAIKLKQKTVDPEVN 150 (447)
T ss_dssp --EEECCCCSTTTTS---BSE--------------ECCCHH-----------------------HHHHHHHHHHTCTTCC
T ss_pred --CCcCCCCCCCCCC---CCe--------------EEECCH-----------------------HHHHHHHHHhhhcCCC
Confidence 7888888877321 010 000000 0000000000000123
Q ss_pred ceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-------------C--CeEEcCCceEEcC
Q psy12350 250 KYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP-------------N--NVVKKPDIAELTP 314 (1129)
Q Consensus 250 ~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~-------------~--~i~~~~~v~~~~~ 314 (1129)
+++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+ . ++..+..|+++++
T Consensus 151 ~vvI-----------iG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~ 219 (447)
T 1nhp_A 151 NVVV-----------IGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEG 219 (447)
T ss_dssp EEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEEC
T ss_pred eEEE-----------ECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEc
Confidence 4443 799999999999999999999999998876552111 1 4566778888875
Q ss_pred Cc-e--EEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 315 TG-V--RFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 315 ~~-v--~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
++ + +..+|+++++|.||+|+|++++.++++. . +.++++..+....++ .+++|++|++|....
T Consensus 220 ~~~v~~v~~~~~~i~~d~vi~a~G~~p~~~~~~~-~-~~~~~~G~i~Vd~~~-~t~~~~Iya~GD~~~ 284 (447)
T 1nhp_A 220 DGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLKG-T-LELHPNGLIKTDEYM-RTSEPDVFAVGDATL 284 (447)
T ss_dssp SSBCCEEEESSCEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCCTTC-BCSSTTEEECGGGSC
T ss_pred cCcEEEEEECCCEEECCEEEECcCCCCChHHHHh-h-hhhcCCCcEEECccc-cCCCCCEEEeeeEEE
Confidence 43 2 3346778999999999999999998864 3 555444332222222 247899999998754
No 66
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=99.84 E-value=8e-22 Score=234.33 Aligned_cols=298 Identities=13% Similarity=0.169 Sum_probs=170.8
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
.+++||||||||+||+++|+.|++ .+++|+|+|+++.. .| ...+|+.+...+..
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~--~~~~VtLId~~~~~----~~-------------~PlL~~va~G~l~~------- 93 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDT--KKYNVSIISPRSYF----LF-------------TPLLPSAPVGTVDE------- 93 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCT--TTCEEEEEESSSEE----EC-------------GGGGGGTTTTSSCG-------
T ss_pred CCCCCEEEECCcHHHHHHHHHhhh--CCCcEEEECCCCCc----cc-------------ccchhHHhhccccH-------
Confidence 345799999999999999999998 67999999997631 11 01112111111100
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEe-ceeeeeeccccccCCCCceEEecc---------------ccCc
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGI---------------PRDT 150 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~-~~~V~~v~~~~~~~~~~~~~~~~~---------------~~~~ 150 (1129)
.++..-++++.... ...++| ..+|+.|+. +...+++... ...+
T Consensus 94 --------------~~i~~p~~~~~~~~--~~~v~~~~~~v~~ID~-----~~k~V~l~~~~~~~~~~~~~~~~~~~~~~ 152 (502)
T 4g6h_A 94 --------------KSIIEPIVNFALKK--KGNVTYYEAEATSINP-----DRNTVTIKSLSAVSQLYQPENHLGLHQAE 152 (502)
T ss_dssp --------------GGGEEEHHHHHTTC--SSCEEEEEEEEEEEEG-----GGTEEEEEEEEEEEECSSSCCCCCCCTTC
T ss_pred --------------HHhhhhHHHHHHhh--cCCeEEEEEEEEEEEh-----hhCEEEEeecccceeecccccccccccCC
Confidence 01110112222111 112222 346777765 3344444321 1223
Q ss_pred cceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchh
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLK 230 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 230 (1129)
.....|| +|||||| +.|+.|++||..+..+. ..+.+++..++......
T Consensus 153 ~~~i~YD-----~LViAtG--s~~~~~~ipG~~e~a~~----l~t~~dA~~ir~~l~~~--------------------- 200 (502)
T 4g6h_A 153 PAEIKYD-----YLISAVG--AEPNTFGIPGVTDYGHF----LKEIPNSLEIRRTFAAN--------------------- 200 (502)
T ss_dssp CEEEECS-----EEEECCC--CEECCTTCTTHHHHCEE----CSSHHHHHHHHHHHHHH---------------------
T ss_pred ceEEeCC-----EEEEcCC--cccccCCccCcccccCC----CCCHHHHHHHHHHHHHH---------------------
Confidence 4567899 9999999 88999999885432211 11222222222111110
Q ss_pred ccccccccccccc-ccccccceeEeeceeeeecCCCCCCCCcccchhhhcccc--------------cEEEEccccCCcc
Q psy12350 231 IYFESFARCSEDF-TEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA--------------TTVFLSHHSEHVK 295 (1129)
Q Consensus 231 ~~~~~~~~~~~~~-~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~--------------~~V~lv~r~~~~~ 295 (1129)
++.+......- ......+++| ||||++|+|+|.+|++.+ .+|+|+++.+.++
T Consensus 201 --~e~a~~~~~~~~~~~~~~~vvV-----------vGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il 267 (502)
T 4g6h_A 201 --LEKANLLPKGDPERRRLLSIVV-----------VGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL 267 (502)
T ss_dssp --HHHHHHSCTTCHHHHHHTEEEE-----------ECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS
T ss_pred --HHHHhcccccchhhccccceEE-----------ECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc
Confidence 00000000000 0011123444 799999999999988654 5799999999887
Q ss_pred cccCCC--------------CeEEcCCceEEcCCceEE----cCCC----EeecCEEEEcccccccC---------CC-C
Q psy12350 296 KLRFPN--------------NVVKKPDIAELTPTGVRF----QDGS----YEQVDIILYCTGYTYRY---------PF-L 343 (1129)
Q Consensus 296 ~~~~~~--------------~i~~~~~v~~~~~~~v~~----~dg~----~~~~D~VI~atG~~~~~---------~~-l 343 (1129)
+...+. ++..++.|++++++++.+ +||+ ++++|.||||+|.+++. +. .
T Consensus 268 ~~~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~ 347 (502)
T 4g6h_A 268 NMFEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKKIPEQN 347 (502)
T ss_dssp TTSCHHHHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGT
T ss_pred cCCCHHHHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHhccccc
Confidence 643321 456677899999887654 4664 57999999999998862 11 1
Q ss_pred CCCCCeEeecCcccccccccccCCCCCeEEecccccccccccccceeeehhhccccc
Q psy12350 344 HESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPFLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 344 ~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~~~~~~~~~~~a~~~~~~~ 400 (1129)
....++.+|+....+.+.++|.++| .+..+.+.+++.+. +||+++|+++.+..
T Consensus 348 ~~~g~I~Vd~~lq~~~~~~IfAiGD--~a~~~~p~~a~~A~--qqg~~~A~ni~~~~ 400 (502)
T 4g6h_A 348 SSKRGLAVNDFLQVKGSNNIFAIGD--NAFAGLPPTAQVAH--QEAEYLAKNFDKMA 400 (502)
T ss_dssp TCCSSEEBCTTSBBTTCSSEEECGG--GEESSSCCCHHHHH--HHHHHHHHHHHHHT
T ss_pred cCCCceeECCccccCCCCCEEEEEc--ccCCCCCCchHHHH--HHHHHHHHHHHHHh
Confidence 2224466665544434444444444 33334445566677 99999999987653
No 67
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=99.84 E-value=5.6e-22 Score=236.42 Aligned_cols=293 Identities=17% Similarity=0.202 Sum_probs=176.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..|++ .|++|+|+||+ .+||+|.+ .+| .....++... .....+..+..|.
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~--~G~~V~liE~~-~~GG~~~~---~gc-----~p~k~l~~~~--~~~~~~~~~~~~g 86 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAE--LGARAAVVESH-KLGGTCVN---VGC-----VPKKVMWNTA--VHSEFMHDHADYG 86 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHH---HSH-----HHHHHHHHHH--HHHHHHTTTTTTT
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-CCCCcccc---cCc-----cchHHHHHHH--HHHHHHHHHHhcC
Confidence 4799999999999999999999 66999999985 79999974 222 1111111110 0111112223333
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCC---------cceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNL---------RNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~---------~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
++.. ....+..++.++.+.+.+.+.. ...+..++ +..++. ..+.+. . ......||
T Consensus 87 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~-~~~~~~-----~~~~v~--~----~g~~~~~d-- 150 (478)
T 3dk9_A 87 FPSC--EGKFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGH-AAFTSD-----PKPTIE--V----SGKKYTAP-- 150 (478)
T ss_dssp SCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESC-EEECSC-----SSCEEE--E----TTEEEECS--
T ss_pred ccCC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeE-EEEeeC-----CeEEEE--E----CCEEEEee--
Confidence 3221 1244666777766655544310 01222222 222211 112222 1 12346788
Q ss_pred eeeEEEEecccCCCCCcc---ccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 160 VRFFLQLMQGHVTLPSKA---EMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 160 ~~~~lvvAtG~~~~p~~p---~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+|||||| +.|..| ++||.. . ...+..+
T Consensus 151 ---~lviAtG--~~p~~p~~~~i~G~~--~-----------------~~~~~~~-------------------------- 180 (478)
T 3dk9_A 151 ---HILIATG--GMPSTPHESQIPGAS--L-----------------GITSDGF-------------------------- 180 (478)
T ss_dssp ---CEEECCC--EEECCCCTTTSTTGG--G-----------------SBCHHHH--------------------------
T ss_pred ---EEEEccC--CCCCCCCcCCCCCCc--e-----------------eEchHHh--------------------------
Confidence 9999999 788888 776621 0 0000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------C
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------N 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~ 302 (1129)
.....+ .++++| ||||++|+|+|..|++.|.+|++++|.+.+++...++ +
T Consensus 181 -~~~~~~----~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv~ 244 (478)
T 3dk9_A 181 -FQLEEL----PGRSVI-----------VGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVE 244 (478)
T ss_dssp -TTCCSC----CSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCE
T ss_pred -hchhhc----CccEEE-----------ECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCCE
Confidence 000111 233333 8999999999999999999999999988776543321 3
Q ss_pred eEEcCCceEEcC--Cc----eEEcC---C----CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCC
Q psy12350 303 VVKKPDIAELTP--TG----VRFQD---G----SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEH 368 (1129)
Q Consensus 303 i~~~~~v~~~~~--~~----v~~~d---g----~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~ 368 (1129)
+..+..|++++. ++ +.+.+ | +++++|.||+|+|++++.++|. +..++..+++..+....++ .++.
T Consensus 245 i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~ 323 (478)
T 3dk9_A 245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ-NTNV 323 (478)
T ss_dssp EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTC-BCSS
T ss_pred EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCc-ccCC
Confidence 444556788763 23 55665 2 5679999999999999998652 3455666555433333332 3678
Q ss_pred CCeEEecccccc----cccccccceeeehhhcccc
Q psy12350 369 PSMCIIGYTYRY----PFLHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 369 p~l~~~G~~~~~----~~~~~~~~~~~~a~~~~~~ 399 (1129)
|++|++|..... +.+. .|++.+|.++.+.
T Consensus 324 ~~IyA~GD~~~~~~~~~~A~--~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 324 KGIYAVGDVCGKALLTPVAI--AAGRKLAHRLFEY 356 (478)
T ss_dssp TTEEECGGGGCSSCCHHHHH--HHHHHHHHHHHSC
T ss_pred CCEEEEEecCCCCccHhHHH--HHHHHHHHHHcCC
Confidence 999999987532 3344 7888888877643
No 68
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=99.84 E-value=5.2e-22 Score=236.39 Aligned_cols=298 Identities=14% Similarity=0.151 Sum_probs=175.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCcccc--ccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIM--ELSG 86 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~--~~~d 86 (1129)
.+||+||||||||++||..|++ .|++|+|||+++.+||+|.+ .+|. | ...++.... ....+. .+..
T Consensus 6 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~~~GG~~~~---~g~~----P-sk~l~~~~~--~~~~~~~~~~~~ 73 (474)
T 1zmd_A 6 DADVTVIGSGPGGYVAAIKAAQ--LGFKTVCIEKNETLGGTCLN---VGCI----P-SKALLNNSH--YYHMAHGTDFAS 73 (474)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSSSSHHHHH---HSHH----H-HHHHHHHHH--HHHHHHSSHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCcCCcccc---cCcc----c-hHHHHHHHH--HHHHhhhhhHhh
Confidence 4799999999999999999999 56899999999899999974 1221 1 111110000 000000 1111
Q ss_pred CCCCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+.++. .....+..++..+ +..+.++.++ .++.++.+ .++ .+.+.+... ++....+.
T Consensus 74 ~g~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~-~~~-------~~~~~v~~~-~gg~~~~~ 140 (474)
T 1zmd_A 74 RGIEM--SEVRLNLDKMMEQKSTAVKALTGGIAHLFKQNKV--VHVNGYGK-ITG-------KNQVTATKA-DGGTQVID 140 (474)
T ss_dssp TTEEE--SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEEE-EEE-------TTEEEEECT-TSCEEEEE
T ss_pred Ccccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE-Eec-------CCEEEEEec-CCCcEEEE
Confidence 11110 0001123333332 2444455555 66666543 232 233344321 11224578
Q ss_pred ecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccc
Q psy12350 156 FDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFES 235 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 235 (1129)
|| +||+||| +.|..|++||.....+ .++..+
T Consensus 141 ~d-----~lViAtG--s~p~~p~i~g~~~~~v-----------------~t~~~~------------------------- 171 (474)
T 1zmd_A 141 TK-----NILIATG--SEVTPFPGITIDEDTI-----------------VSSTGA------------------------- 171 (474)
T ss_dssp EE-----EEEECCC--EEECCCTTCCCCSSSE-----------------ECHHHH-------------------------
T ss_pred eC-----EEEECCC--CCCCCCCCCCCCcCcE-----------------EcHHHH-------------------------
Confidence 89 9999999 7788887766211000 000000
Q ss_pred ccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccc-ccCC--------------
Q psy12350 236 FARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKK-LRFP-------------- 300 (1129)
Q Consensus 236 ~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~-~~~~-------------- 300 (1129)
..... ..++++ | ||||++|+|+|..|++.|.+|+++++.+.+++ ...+
T Consensus 172 --~~~~~----~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~G 234 (474)
T 1zmd_A 172 --LSLKK----VPEKMV-------V----IGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQG 234 (474)
T ss_dssp --TTCSS----CCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHTT
T ss_pred --hhccc----cCceEE-------E----ECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHCC
Confidence 00000 123333 3 89999999999999999999999999988766 2221
Q ss_pred CCeEEcCCceEEcCC--c-eEE-------cCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCC
Q psy12350 301 NNVVKKPDIAELTPT--G-VRF-------QDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHP 369 (1129)
Q Consensus 301 ~~i~~~~~v~~~~~~--~-v~~-------~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p 369 (1129)
-++..+..|++++++ + +.+ .+++++++|.||+|+|++++.++|. +..++.++++..+....++ .+++|
T Consensus 235 v~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~ 313 (474)
T 1zmd_A 235 FKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRF-QTKIP 313 (474)
T ss_dssp CEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTC-BCSST
T ss_pred CEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCC-ccCCC
Confidence 144556678888643 2 443 3566789999999999999998843 2344555544333333332 26789
Q ss_pred CeEEecccccccc--cccccceeeehhhccc
Q psy12350 370 SMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 370 ~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
++|++|.....|. .....|++.+|.++.+
T Consensus 314 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 344 (474)
T 1zmd_A 314 NIYAIGDVVAGPMLAHKAEDEGIICVEGMAG 344 (474)
T ss_dssp TEEECGGGSSSCCCHHHHHHHHHHHHHHHTT
T ss_pred CEEEeeecCCCCccHHHHHHHHHHHHHHhcC
Confidence 9999998854321 1223788888887764
No 69
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=99.84 E-value=2.1e-21 Score=227.56 Aligned_cols=263 Identities=14% Similarity=0.160 Sum_probs=161.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||+||++||..|++.|...+|+|+|+++.++ |. +..+++....-..
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~----------------------~~--~~~l~~~~~~~~~-- 57 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIP----------------------HH--LPPLSKAYLAGKA-- 57 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCC----------------------BC--SGGGGTTTTTTCS--
T ss_pred CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCC----------------------Cc--CCCCcHHHhCCCC--
Confidence 479999999999999999999966444899999976432 10 0011111110000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
..+++.....++.++.++ .++++++|+.+++ +.+.+.+. + .....|| +||+||
T Consensus 58 ----------~~~~~~~~~~~~~~~~gv--~~~~~~~v~~i~~-----~~~~v~~~---~--g~~~~~d-----~lviAt 110 (431)
T 1q1r_A 58 ----------TAESLYLRTPDAYAAQNI--QLLGGTQVTAINR-----DRQQVILS---D--GRALDYD-----RLVLAT 110 (431)
T ss_dssp ----------CSGGGBSSCHHHHHHTTE--EEECSCCEEEEET-----TTTEEEET---T--SCEEECS-----EEEECC
T ss_pred ----------ChHHhcccCHHHHHhCCC--EEEeCCEEEEEEC-----CCCEEEEC---C--CCEEECC-----EEEEcC
Confidence 000000001223345555 7888999998875 23334331 1 2357799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||.....-.+. +.... .+.+....+.+ ...
T Consensus 111 G--~~p~~~~i~G~~~~~~~~v---------------~~~~~----------------------~~d~~~l~~~l--~~~ 149 (431)
T 1q1r_A 111 G--GRPRPLPVASGAVGKANNF---------------RYLRT----------------------LEDAECIRRQL--IAD 149 (431)
T ss_dssp C--EEECCCGGGTTHHHHSTTE---------------EESSS----------------------HHHHHHHHHTC--CTT
T ss_pred C--CCccCCCCCCcccCCCceE---------------EEECC----------------------HHHHHHHHHHh--hcC
Confidence 9 7888888877321110000 00000 00000000011 012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC---------------CeEEcCCceEEc
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------------NVVKKPDIAELT 313 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------------~i~~~~~v~~~~ 313 (1129)
++++| ||+|++|+|+|..|++.|.+|+++++.+.+++...+. ++..+..|++++
T Consensus 150 ~~vvV-----------iGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~ 218 (431)
T 1q1r_A 150 NRLVV-----------IGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFE 218 (431)
T ss_dssp CEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEE
T ss_pred CeEEE-----------ECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEE
Confidence 33333 8999999999999999999999999988776532221 455677888886
Q ss_pred C---C----ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 314 P---T----GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 314 ~---~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
+ + .|.++||+++++|.||+|+|++++.++++ ..++.++....++-+. .+++|++|++|.....
T Consensus 219 ~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~-~~gl~~~~gi~Vd~~~---~ts~~~IyA~GD~~~~ 288 (431)
T 1q1r_A 219 MSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCELAS-AAGLQVDNGIVINEHM---QTSDPLIMAVGDCARF 288 (431)
T ss_dssp ECTTTCCEEEEEETTSCEEECSEEEECCCEEECCHHHH-HTTCCBSSSEECCTTS---BCSSTTEEECGGGEEE
T ss_pred eccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcchhh-ccCCCCCCCEEECCCc---ccCCCCEEEEEeEEEE
Confidence 4 2 37788999999999999999999988765 3445544322222222 2578999999987543
No 70
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=99.83 E-value=2.2e-21 Score=230.88 Aligned_cols=266 Identities=14% Similarity=0.202 Sum_probs=164.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+|||||+||++||..|++.+.+.+|+|||+++.+|+... + .+.+. ...
T Consensus 37 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~-----~---------~~~~~------~~~--------- 87 (480)
T 3cgb_A 37 MNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQC-----G---------LPYVI------SGA--------- 87 (480)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGG-----G---------HHHHH------TTS---------
T ss_pred ceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCC-----C---------cchhh------cCC---------
Confidence 699999999999999999999655899999999876542110 0 00000 000
Q ss_pred CCCCCCCCCCHHHHH-HHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 90 KGHPDKSYIAANDVL-EYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~-~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
....+++. .+.+.+.+++++ .++++++|+.++. +...+.+.+..+++.....|| +||+||
T Consensus 88 -------~~~~~~l~~~~~~~~~~~~gv--~~~~~~~v~~i~~-----~~~~v~v~~~~~g~~~~~~~d-----~lviAt 148 (480)
T 3cgb_A 88 -------IASTEKLIARNVKTFRDKYGI--DAKVRHEVTKVDT-----EKKIVYAEHTKTKDVFEFSYD-----RLLIAT 148 (480)
T ss_dssp -------SSCGGGGBSSCHHHHHHTTCC--EEESSEEEEEEET-----TTTEEEEEETTTCCEEEEECS-----EEEECC
T ss_pred -------cCCHHHhhhcCHHHHHhhcCC--EEEeCCEEEEEEC-----CCCEEEEEEcCCCceEEEEcC-----EEEECC
Confidence 00011111 112334455666 7888999998875 334555543222322357899 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||... .+.+ +... .+.+....+.+.....
T Consensus 149 G--~~p~~p~i~G~~~---~~v~--------------~~~~-----------------------~~~~~~l~~~~~~~~~ 186 (480)
T 3cgb_A 149 G--VRPVMPEWEGRDL---QGVH--------------LLKT-----------------------IPDAERILKTLETNKV 186 (480)
T ss_dssp C--EEECCCCCBTTTS---BTEE--------------CCSS-----------------------HHHHHHHHHHHHSSCC
T ss_pred C--CcccCCCCCCccC---CCEE--------------EeCC-----------------------HHHHHHHHHHhhhcCC
Confidence 9 7888888877321 0100 0000 0000000000100012
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeEEcCCceEEcC
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVVKKPDIAELTP 314 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~~~~~v~~~~~ 314 (1129)
++++| ||||++|+|+|..|++.|.+|+++++.+.+++...+ -++..++.|+++++
T Consensus 187 ~~vvV-----------iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~ 255 (480)
T 3cgb_A 187 EDVTI-----------IGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKG 255 (480)
T ss_dssp CEEEE-----------ECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEE
T ss_pred CeEEE-----------ECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEc
Confidence 33433 899999999999999999999999998876552211 14555778888875
Q ss_pred Cc-e--EEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 315 TG-V--RFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 315 ~~-v--~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
++ + +..++.++++|.||+|+|++++.++++ ..++.++++..+....++ ..++|++|++|...
T Consensus 256 ~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~~l~-~~g~~~~~~G~I~Vd~~~-~ts~p~IyA~GD~~ 320 (480)
T 3cgb_A 256 NERVEAVETDKGTYKADLVLVSVGVKPNTDFLE-GTNIRTNHKGAIEVNAYM-QTNVQDVYAAGDCA 320 (480)
T ss_dssp SSBEEEEEETTEEEECSEEEECSCEEESCGGGT-TSCCCBCTTSCBCCCTTS-BCSSTTEEECGGGB
T ss_pred CCcEEEEEECCCEEEcCEEEECcCCCcChHHHH-hCCcccCCCCCEEECCCc-cCCCCCEEEeeeEE
Confidence 43 2 334566889999999999999998886 455666554433333322 24689999999875
No 71
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=99.83 E-value=5.6e-21 Score=227.01 Aligned_cols=296 Identities=16% Similarity=0.181 Sum_probs=171.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||+||++||.+|++ .|++|+|||++ .+||+|.+ .+|. | ...++...... ......+.+
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~-~~GG~~~~---~g~i----p-~k~l~~~~~~~--~~~~~~~~~ 69 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVE--QGAQVTLIERG-TIGGTCVN---VGCV----P-SKIMIRAAHIA--HLRRESPFD 69 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS-STTHHHHH---HSHH----H-HHHHHHHHHHH--HHHHCCTTT
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC-CCCccccC---CCcc----c-hHHHHHHHHHH--HHHhhhhhc
Confidence 35899999999999999999999 56899999997 79999984 2221 1 11111100000 000000000
Q ss_pred -CCCCCCCCCCCCHHHHH-------HHHH-----HHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 88 -HHKGHPDKSYIAANDVL-------EYLN-----DFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 88 -~~~~~~~~~~~~~~~~~-------~yl~-----~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
.++. ........++. ++++ +..++. ++ .++.+ +++.++. +.+.+.. .+++...
T Consensus 70 ~g~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v--~~~~g-~~~~~~~-------~~~~v~~-~~g~~~~ 136 (467)
T 1zk7_A 70 GGIAA--TVPTIDRSKLLAQQQARVDELRHAKYEGILGGNPAI--TVVHG-EARFKDD-------QSLTVRL-NEGGERV 136 (467)
T ss_dssp TTSCC--CCCCCCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTE--EEEEE-EEEEEET-------TEEEEEE-TTSSEEE
T ss_pred CCccC--CCCccCHHHHHHHHHHHHHHHhhhhHHHHHhccCCe--EEEEE-EEEEccC-------CEEEEEe-CCCceEE
Confidence 0000 01112233333 2332 112222 32 44444 3444432 3344432 2222245
Q ss_pred EEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccc
Q psy12350 154 YLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYF 233 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 233 (1129)
..|| +||+||| +.|..|++||.....+ ..+...
T Consensus 137 ~~~d-----~lviAtG--s~p~~p~i~G~~~~~~-----------------~~~~~~----------------------- 169 (467)
T 1zk7_A 137 VMFD-----RCLVATG--ASPAVPPIPGLKESPY-----------------WTSTEA----------------------- 169 (467)
T ss_dssp EECS-----EEEECCC--EEECCCCCTTTTTSCC-----------------BCHHHH-----------------------
T ss_pred EEeC-----EEEEeCC--CCCCCCCCCCCCcCce-----------------ecHHHH-----------------------
Confidence 7799 9999999 7888888876311000 000000
Q ss_pred ccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC------------
Q psy12350 234 ESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN------------ 301 (1129)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~------------ 301 (1129)
...+. ..++++ | ||+|++|+|+|..|++.|.+|+++++.+.+++ ..+.
T Consensus 170 ----~~~~~----~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~-~~~~~~~~l~~~l~~~ 229 (467)
T 1zk7_A 170 ----LASDT----IPERLA-------V----IGSSVVALELAQAFARLGSKVTVLARNTLFFR-EDPAIGEAVTAAFRAE 229 (467)
T ss_dssp ----HHCSS----CCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSCTTTT-SCHHHHHHHHHHHHHT
T ss_pred ----hcccc----cCCEEE-------E----ECCCHHHHHHHHHHHHcCCEEEEEEECCccCC-CCHHHHHHHHHHHHhC
Confidence 00000 123333 3 89999999999999999999999999988765 2211
Q ss_pred --CeEEcCCceEEcCCc----eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEe
Q psy12350 302 --NVVKKPDIAELTPTG----VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCII 374 (1129)
Q Consensus 302 --~i~~~~~v~~~~~~~----v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~ 374 (1129)
++..++.|+++++++ |.++ +.++++|.||+|+|++++.+++. +..++.++++..+....++ .+++|++|++
T Consensus 230 Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-~t~~~~iya~ 307 (467)
T 1zk7_A 230 GIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGM-RTSNPNIYAA 307 (467)
T ss_dssp TCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTC-BCSSTTEEEC
T ss_pred CCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCc-ccCCCCEEEE
Confidence 355567788886432 4444 56789999999999999987642 2345555544433332222 2578999999
Q ss_pred cccccccc--cccccceeeehhhccc
Q psy12350 375 GYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 375 G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
|.....|. .....|++.+|.++.+
T Consensus 308 GD~~~~~~~~~~A~~~g~~aa~~i~~ 333 (467)
T 1zk7_A 308 GDCTDQPQFVYVAAAAGTRAAINMTG 333 (467)
T ss_dssp STTBSSCCCHHHHHHHHHHHHHHHTT
T ss_pred eccCCCcccHHHHHHHHHHHHHHHcC
Confidence 98754321 1223788888887764
No 72
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.83 E-value=1.8e-21 Score=230.16 Aligned_cols=285 Identities=13% Similarity=0.109 Sum_probs=174.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccC-----cccccccccCCcccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHS-----SMYKSLKTNLPKEIM 82 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~-----~~y~~l~~~~~~~~~ 82 (1129)
..+||+||||||||++||.+|++ .|++|+|||+ +.+||+|.+ .+|. |.+. ..|+.++
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~-~~~GG~~~~---~g~~----Psk~l~~~~~~~~~~~-------- 65 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEG-QALGGTCLN---IGCI----PSKALIHVAEQFHQAS-------- 65 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHH--HTCCEEEECS-SCTTHHHHH---HSHH----HHHHHHHHHHHHHHHH--------
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEcc-CCCCCcCCC---cCcH----hHHHHHHHHHHHHHHh--------
Confidence 34799999999999999999999 5689999999 789999984 2221 1110 0111111
Q ss_pred ccCC---CCCCCCCCCCCCCHHHHHHHH-----------HHHHHhcCCcceeEeceeeeeeccccccCCCCceEEecccc
Q psy12350 83 ELSG---YHHKGHPDKSYIAANDVLEYL-----------NDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPR 148 (1129)
Q Consensus 83 ~~~d---~~~~~~~~~~~~~~~~~~~yl-----------~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~ 148 (1129)
.+.. |.++. ....++.+++..+. +.+.++.++ .++.++.+. ++ .+++.+.
T Consensus 66 ~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~g~~~~-~~-------~~~v~v~---- 129 (458)
T 1lvl_A 66 RFTEPSPLGISV--ASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGV--KVVHGWAKV-LD-------GKQVEVD---- 129 (458)
T ss_dssp HTTSCCTTCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECSCEEE-EE-------TTEEEET----
T ss_pred hcccccccCccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEEEEEEE-cc-------CCEEEEe----
Confidence 1111 22211 11123445554443 344455555 566666543 22 2333332
Q ss_pred CccceEEecceeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCcc
Q psy12350 149 DTVGFYLFDLQVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPV 227 (1129)
Q Consensus 149 ~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 227 (1129)
+ ....|| +|||||| +.|..|+ +|.+. . ...+..+
T Consensus 130 ~--~~~~~d-----~lviATG--s~p~~~~~~~~~~------~-------------v~~~~~~----------------- 164 (458)
T 1lvl_A 130 G--QRIQCE-----HLLLATG--SSSVELPMLPLGG------P-------------VISSTEA----------------- 164 (458)
T ss_dssp T--EEEECS-----EEEECCC--EEECCBTTBCCBT------T-------------EECHHHH-----------------
T ss_pred e--EEEEeC-----EEEEeCC--CCCCCCCCCCccC------c-------------EecHHHH-----------------
Confidence 1 456799 9999999 6777665 42100 0 0000000
Q ss_pred chhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC------
Q psy12350 228 LLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN------ 301 (1129)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~------ 301 (1129)
. .+. ...+++ +| ||||++|+|+|..|++.|.+|+++++.+.+++...++
T Consensus 165 ----------~---~~~-~~~~~v-------vV----iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~ 219 (458)
T 1lvl_A 165 ----------L---APK-ALPQHL-------VV----VGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVA 219 (458)
T ss_dssp ----------T---CCS-SCCSEE-------EE----ECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHH
T ss_pred ----------h---hhh-ccCCeE-------EE----ECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHH
Confidence 0 000 012333 33 8999999999999999999999999998876532211
Q ss_pred --------CeEEcCCceEEcCCceEEc--CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCC
Q psy12350 302 --------NVVKKPDIAELTPTGVRFQ--DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEH 368 (1129)
Q Consensus 302 --------~i~~~~~v~~~~~~~v~~~--dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~ 368 (1129)
++..+..|++++++++.+. +| +++++|.||+|||++++.+++. +..++.++++ .+....++ .+++
T Consensus 220 ~~l~~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~-~t~~ 297 (458)
T 1lvl_A 220 ESLKKLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERC-QTSM 297 (458)
T ss_dssp HHHHHHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTC-BCSS
T ss_pred HHHHHCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCC-cCCC
Confidence 3455677888876435554 57 5789999999999999998752 3455666654 44444432 3678
Q ss_pred CCeEEecccccccc--cccccceeeehhhccc
Q psy12350 369 PSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 369 p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
|++|++|.....|. .....||+.+|.++.+
T Consensus 298 ~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 329 (458)
T 1lvl_A 298 HNVWAIGDVAGEPMLAHRAMAQGEMVAEIIAG 329 (458)
T ss_dssp TTEEECGGGGCSSCCHHHHHHHHHHHHHHHTT
T ss_pred CCEEEeeccCCCcccHHHHHHHHHHHHHHhcC
Confidence 99999998754321 1123777777777763
No 73
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=99.83 E-value=6.7e-22 Score=235.82 Aligned_cols=291 Identities=15% Similarity=0.149 Sum_probs=174.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||||||+||..|++ .|++|+|||| +.+||+|.+ .+|. |.+...+.. ..+.....+.+|.
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~--~G~~V~liEk-~~~GG~~~~---~gci----p~k~l~~~a---~~~~~~~~~~~~g 92 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGA--LGKRVAIAEE-YRIGGTCVI---RGCV----PKKLYFYAS---QYAQEFSKSIGFG 92 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SCTTHHHHH---HSHH----HHHHHHHHH---HHHHHHHHHGGGT
T ss_pred CCCEEEECcCHHHHHHHHHHHh--CcCEEEEEeC-CCCCCceec---cCcc----ccHHHHHHH---HHHHHHHHHHhCC
Confidence 4799999999999999999999 6699999999 789999984 2221 111101100 0111111222222
Q ss_pred CCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++.. ....+...+.++ +..+.++.++ .+..+ ++..++. +.+.+. .......||
T Consensus 93 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g-~~~~i~~-------~~v~v~----~~~~~~~~d 156 (484)
T 3o0h_A 93 WKYA--DPIFNWEKLVAAKNKEISRLEGLYREGLQNSNV--HIYES-RAVFVDE-------HTLELS----VTGERISAE 156 (484)
T ss_dssp BCCC--CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEES-CEEEEET-------TEEEET----TTCCEEEEE
T ss_pred cccC--CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEe-EEEEeeC-------CEEEEe----cCCeEEEeC
Confidence 2211 011233333333 2333333333 33333 3333322 233321 123456788
Q ss_pred ceeeeEEEEecccCCCCC-ccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPS-KAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~-~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+||+||| +.|. .|++||... + .
T Consensus 157 -----~lviAtG--~~p~~~p~i~G~~~--~-----------------~------------------------------- 179 (484)
T 3o0h_A 157 -----KILIATG--AKIVSNSAIKGSDL--C-----------------L------------------------------- 179 (484)
T ss_dssp -----EEEECCC--EEECCC--CBTGGG--S-----------------B-------------------------------
T ss_pred -----EEEEccC--CCcccCCCCCCccc--c-----------------c-------------------------------
Confidence 9999999 7788 887876310 0 0
Q ss_pred ccccccccc-ccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------
Q psy12350 237 ARCSEDFTE-FRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN-------------- 301 (1129)
Q Consensus 237 ~~~~~~~~~-~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~-------------- 301 (1129)
...+.+.. ...++++| ||+|++|+|+|..+++.|.+|+++++.+.+++...+.
T Consensus 180 -~~~~~~~~~~~~~~v~V-----------iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv 247 (484)
T 3o0h_A 180 -TSNEIFDLEKLPKSIVI-----------VGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGI 247 (484)
T ss_dssp -CTTTGGGCSSCCSEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred -cHHHHHhHHhcCCcEEE-----------ECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCC
Confidence 00000100 01233333 8999999999999999999999999998765532221
Q ss_pred CeEEcCCceEEcCC----ceEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEecc
Q psy12350 302 NVVKKPDIAELTPT----GVRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGY 376 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~----~v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~ 376 (1129)
++..++.|++++.+ .|.++||+++++|.||+|+|++++..+|. +..++.++++..+....++ .++.|++|++|.
T Consensus 248 ~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD 326 (484)
T 3o0h_A 248 SIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKM-TTNVSHIWAVGD 326 (484)
T ss_dssp EEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEECGG
T ss_pred EEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCC-CCCCCCEEEEEe
Confidence 45556788888654 37888999999999999999999998853 2344555554433332222 267899999998
Q ss_pred cccc-ccc-ccccceeeehhhccc
Q psy12350 377 TYRY-PFL-HESCGIKVVNKNVQP 398 (1129)
Q Consensus 377 ~~~~-~~~-~~~~~~~~~a~~~~~ 398 (1129)
.... +++ ....|++.+|.++.+
T Consensus 327 ~~~~~~~~~~A~~~g~~aa~~i~~ 350 (484)
T 3o0h_A 327 VTGHIQLTPVAIHDAMCFVKNAFE 350 (484)
T ss_dssp GGTSCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCCCcCHHHHHHHHHHHHHHHcC
Confidence 7542 221 233788888887764
No 74
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=99.83 E-value=2.5e-21 Score=225.39 Aligned_cols=256 Identities=15% Similarity=0.169 Sum_probs=162.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||+||++||..|++.|...+|+|+|+++.++.. .+ .+++....- ..
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~-----------------~~-------~~~~~~~~~-~~ 60 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYD-----------------RP-------PLSKDFMAH-GD 60 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBC-----------------SG-------GGGTHHHHH-CC
T ss_pred CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCccc-----------------CC-------CCCHHHhCC-Cc
Confidence 357999999999999999999996654579999997754210 00 011111000 00
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
+ ...+ ++ +++++++ .++++++|+.+++ +.+.+.+. + .....|| +||+|
T Consensus 61 --~---~~~~---------~~-~~~~~~v--~~~~~~~v~~i~~-----~~~~v~~~---~--g~~~~~d-----~lviA 108 (408)
T 2gqw_A 61 --A---EKIR---------LD-CKRAPEV--EWLLGVTAQSFDP-----QAHTVALS---D--GRTLPYG-----TLVLA 108 (408)
T ss_dssp --G---GGSB---------CC-CTTSCSC--EEEETCCEEEEET-----TTTEEEET---T--SCEEECS-----EEEEC
T ss_pred --h---hhhh---------HH-HHHHCCC--EEEcCCEEEEEEC-----CCCEEEEC---C--CCEEECC-----EEEEC
Confidence 0 0000 01 2344555 7888999998876 34555442 1 2357799 99999
Q ss_pred cccCCCCCcccc-ccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 168 QGHVTLPSKAEM-LADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 168 tG~~~~p~~p~i-~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
|| +.|..|++ ||.. .+. +.... .+.+....+.+ .
T Consensus 109 tG--~~~~~~~i~~G~~----~~v---------------~~~~~----------------------~~~~~~l~~~~--~ 143 (408)
T 2gqw_A 109 TG--AAPRALPTLQGAT----MPV---------------HTLRT----------------------LEDARRIQAGL--R 143 (408)
T ss_dssp CC--EEECCCGGGTTCS----SCE---------------EECCS----------------------HHHHHHHHTTC--C
T ss_pred CC--CCCCCCCccCCCC----CcE---------------EEECC----------------------HHHHHHHHHHh--h
Confidence 99 78888888 7732 110 00000 00000000011 0
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC---------------CCeEEcCCceE
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP---------------NNVVKKPDIAE 311 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~---------------~~i~~~~~v~~ 311 (1129)
..++++| ||+|++|+|+|..|++.|.+||++++.+.+++...+ -++..++.|++
T Consensus 144 ~~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 212 (408)
T 2gqw_A 144 PQSRLLI-----------VGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTG 212 (408)
T ss_dssp TTCEEEE-----------ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred cCCeEEE-----------ECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEE
Confidence 1233433 899999999999999999999999999877653221 14666788999
Q ss_pred EcCCceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccccc
Q psy12350 312 LTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380 (1129)
Q Consensus 312 ~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~ 380 (1129)
++++.|+++||+++++|.||+|+|++++.++++ ..++..+....++-+. .+++|++|++|.....
T Consensus 213 i~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~-~~gl~~~~gi~Vd~~~---~t~~~~IyA~GD~~~~ 277 (408)
T 2gqw_A 213 SVDGVVLLDDGTRIAADMVVVGIGVLANDALAR-AAGLACDDGIFVDAYG---RTTCPDVYALGDVTRQ 277 (408)
T ss_dssp EETTEEEETTSCEEECSEEEECSCEEECCHHHH-HHTCCBSSSEECCTTC---BCSSTTEEECGGGEEE
T ss_pred EECCEEEECCCCEEEcCEEEECcCCCccHHHHH-hCCCCCCCCEEECCCC---ccCCCCEEEEEEEEEe
Confidence 874478999999999999999999999988765 2334443221222222 2578999999987543
No 75
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=99.83 E-value=1.6e-21 Score=232.47 Aligned_cols=298 Identities=16% Similarity=0.214 Sum_probs=175.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||+||++||..|++ .|++|+|+|+++.+||+|.+ .+|. | ...+.... .....+..+..+
T Consensus 5 ~~~dVvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~---~g~~----p-sk~ll~~~--~~~~~~~~~~~~ 72 (482)
T 1ojt_A 5 AEYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTLGGVCLN---VGCI----P-SKALLHNA--AVIDEVRHLAAN 72 (482)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCSSHHHHH---HSHH----H-HHHHHHHH--HHHHHHHHGGGG
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCceee---eccc----c-hHHHHHHH--HHHHHHHHHHhC
Confidence 35899999999999999999999 66999999999999999974 1220 1 00000000 000000001111
Q ss_pred CCCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc---------
Q psy12350 88 HHKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP--------- 147 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~--------- 147 (1129)
.++. .........+..+ ++.++++.++ .+++++.+. ++ .+.+.+...+
T Consensus 73 gi~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~-------~~~v~v~~~~g~~~~~~~~ 140 (482)
T 1ojt_A 73 GIKY--PEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKV--DVIQGDGQF-LD-------PHHLEVSLTAGDAYEQAAP 140 (482)
T ss_dssp TCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEEEEEEE-EE-------TTEEEEEEEEEEETTEEEE
T ss_pred Cccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCc--EEEeeEEEE-cc-------CCEEEEEecCCcccccccc
Confidence 1110 0011233333332 3344555555 667776553 22 2233332111
Q ss_pred cCccceEEecceeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCc
Q psy12350 148 RDTVGFYLFDLQVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPP 226 (1129)
Q Consensus 148 ~~~~~~~~~d~~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 226 (1129)
.++.....|| +||+||| +.|..|+ +|.+. . ...+..
T Consensus 141 ~g~~~~i~ad-----~lViAtG--s~p~~~~~i~~~~--~-----------------v~~~~~----------------- 177 (482)
T 1ojt_A 141 TGEKKIVAFK-----NCIIAAG--SRVTKLPFIPEDP--R-----------------IIDSSG----------------- 177 (482)
T ss_dssp EEEEEEEEEE-----EEEECCC--EEECCCSSCCCCT--T-----------------EECHHH-----------------
T ss_pred cCcceEEEcC-----EEEECCC--CCCCCCCCCCccC--c-----------------EEcHHH-----------------
Confidence 1112356788 9999999 6677765 33100 0 000000
Q ss_pred cchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC-----
Q psy12350 227 VLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN----- 301 (1129)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~----- 301 (1129)
...+. .. +++++| ||||++|+|+|..|++.|.+||++++.+.+++...++
T Consensus 178 -------------~~~~~--~~------~~~vvV----iGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l 232 (482)
T 1ojt_A 178 -------------ALALK--EV------PGKLLI----IGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVW 232 (482)
T ss_dssp -------------HTTCC--CC------CSEEEE----ESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHH
T ss_pred -------------Hhccc--cc------CCeEEE----ECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHH
Confidence 00010 01 233333 8999999999999999999999999998876643221
Q ss_pred ---------CeEEcCCceEEcCC----ceEEcC----CCEeecCEEEEcccccccCCCCC-CCCCeEeecCccccccccc
Q psy12350 302 ---------NVVKKPDIAELTPT----GVRFQD----GSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHL 363 (1129)
Q Consensus 302 ---------~i~~~~~v~~~~~~----~v~~~d----g~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~ 363 (1129)
++..+..|++++++ .|.++| |+++++|.||+|+|++++.++|. +..++.++++..+....++
T Consensus 233 ~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~ 312 (482)
T 1ojt_A 233 QKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQM 312 (482)
T ss_dssp HHHHGGGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTS
T ss_pred HHHHHhcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCc
Confidence 45556778888643 267777 77889999999999999998852 3456666554433332222
Q ss_pred ccCCCCCeEEeccccccc-c-cccccceeeehhhccc
Q psy12350 364 INIEHPSMCIIGYTYRYP-F-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 364 ~~~~~p~l~~~G~~~~~~-~-~~~~~~~~~~a~~~~~ 398 (1129)
.+++|++|++|.....| + .....|++.+|.++.+
T Consensus 313 -~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g 348 (482)
T 1ojt_A 313 -RTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAG 348 (482)
T ss_dssp -BCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred -ccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcC
Confidence 25789999999875422 1 1223777777777764
No 76
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=99.83 E-value=9.2e-21 Score=211.91 Aligned_cols=280 Identities=14% Similarity=0.137 Sum_probs=168.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSG 86 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d 86 (1129)
|+.+||+|||||||||+||.+|++ .+++|+|||++ ..||.+.. .| ++
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar--~g~~v~lie~~-~~gg~~~~----------------~~--------------~~ 50 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGR--ARKQIALFDNN-TNRNRVTQ----------------NS--------------HG 50 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECS-CCGGGGSS----------------CB--------------CC
T ss_pred CCCcCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCC-CCCCeeee----------------ec--------------CC
Confidence 456899999999999999999999 66999999995 46665431 01 11
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 87 YHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
|+. ..-.+..++.+...+.+.+++. ...++..+..+... +....++.+ .....+.|| +|||
T Consensus 51 ~~~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~----~~~~~~v~~---~~g~~~~a~-----~lii 111 (304)
T 4fk1_A 51 FIT-----RDGIKPEEFKEIGLNEVMKYPS--VHYYEKTVVMITKQ----STGLFEIVT---KDHTKYLAE-----RVLL 111 (304)
T ss_dssp STT-----CTTBCHHHHHHHHHHHHTTSTT--EEEEECCEEEEEEC----TTSCEEEEE---TTCCEEEEE-----EEEE
T ss_pred ccC-----CCCCCHHHHHHHHHHHHHhcCC--EEEEeeEEEEeeec----CCCcEEEEE---CCCCEEEeC-----EEEE
Confidence 111 1123455666666666666643 22334445544432 111122221 223456788 9999
Q ss_pred ecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccc
Q psy12350 167 MQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF 246 (1129)
Q Consensus 167 AtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 246 (1129)
||| +.|..|++||... +.++ +..... ..+.+ ..
T Consensus 112 ATG--s~p~~p~i~G~~~--~~~~-------------~v~~~~-----------------------------~~~~~-~~ 144 (304)
T 4fk1_A 112 ATG--MQEEFPSIPNVRE--YYGK-------------SLFSCP-----------------------------YCDGW-EL 144 (304)
T ss_dssp CCC--CEEECCSCTTHHH--HBTT-------------TEESCH-----------------------------HHHSG-GG
T ss_pred ccC--CccccccccCccc--cccc-------------eeeecc-----------------------------ccchh-Hh
Confidence 999 8899999988432 2111 000000 00111 12
Q ss_pred cccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc------CCCCeEEcCCceEEcCC-----
Q psy12350 247 RKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR------FPNNVVKKPDIAELTPT----- 315 (1129)
Q Consensus 247 ~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~------~~~~i~~~~~v~~~~~~----- 315 (1129)
+.++++|| .|||..++|+|..+...+++|+++.+.+.+.... ....+. ...++++.++
T Consensus 145 ~~~~~~VI----------ggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~~~l~~~g~~~~-~~~v~~~~~~~~~~~ 213 (304)
T 4fk1_A 145 KDQPLIII----------SENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDELSNKNIPVI-TESIRTLQGEGGYLK 213 (304)
T ss_dssp TTSCEEEE----------CCSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHHHHHHTTTCCEE-CSCEEEEESGGGCCC
T ss_pred cCCceeee----------cCCCchhhhHHHHHHhCCceEEEEeccccchhhhhhhhhccceeEe-eeeEEEeecCCCeee
Confidence 24555553 3444567899999999999999999887653321 111233 3346666543
Q ss_pred ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---ccccccceeee
Q psy12350 316 GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHESCGIKVV 392 (1129)
Q Consensus 316 ~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~~~~~~~~ 392 (1129)
.|.+.||+++++|.+|+++|..++..++. ..++.++++..+....++ -++.|++|.+|.....+ ...+..|++.+
T Consensus 214 ~v~~~~g~~i~~~~~vi~~g~~~~~~~~~-~~g~~~~~~G~I~vd~~~-~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~A 291 (304)
T 4fk1_A 214 KVEFHSGLRIERAGGFIVPTFFRPNQFIE-QLGCELQSNGTFVIDDFG-RTSEKNIYLAGETTTQGPSSLIIAASQGNKA 291 (304)
T ss_dssp EEEETTSCEECCCEEEECCEEECSSCHHH-HTTCCCCTTSSSCSSTTC-BCSSTTEEECSHHHHTSCCCHHHHHHHHHHH
T ss_pred eeeccccceeeecceeeeeccccCChhhh-hcCeEECCCCCEEECcCC-ccCCCCEEEEeccCCCcchHHHHHHHHHHHH
Confidence 37889999999999999999888877765 456777665433332222 36789999999875322 22233566665
Q ss_pred hhhccc
Q psy12350 393 NKNVQP 398 (1129)
Q Consensus 393 a~~~~~ 398 (1129)
|..+..
T Consensus 292 A~~i~~ 297 (304)
T 4fk1_A 292 AIAINS 297 (304)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555443
No 77
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=99.83 E-value=5.3e-22 Score=237.29 Aligned_cols=297 Identities=13% Similarity=0.140 Sum_probs=168.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccC-----cccccccccCCcccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHS-----SMYKSLKTNLPKEIM 82 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~-----~~y~~l~~~~~~~~~ 82 (1129)
..+||+||||||||++||..|++ .|++|+||||++.+||+|.+ .+|. |.+. ..+..+...
T Consensus 24 ~~~dVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~GG~~~~---~gci----P~k~l~~~~~~~~~~~~~------ 88 (491)
T 3urh_A 24 MAYDLIVIGSGPGGYVCAIKAAQ--LGMKVAVVEKRSTYGGTCLN---VGCI----PSKALLHASEMFHQAQHG------ 88 (491)
T ss_dssp --CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHH---HSHH----HHHHHHHHHHHHHHHHHS------
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCcccc---ccch----hhHHHHHHHHHHHHHHhh------
Confidence 35799999999999999999999 66999999999999999985 2221 1110 011111100
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHHHHHH-----------HHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 83 ELSGYHHKGHPDKSYIAANDVLEYLNDF-----------ADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~~~~yl~~~-----------~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
+..|.++. .........+.++.+.+ .++.++ .+..++.+ . .+.+.+.+.+ ..+..
T Consensus 89 -~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~g~~~-~-------~~~~~~~v~~-~~g~~ 154 (491)
T 3urh_A 89 -LEALGVEV--ANPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKI--DGFQGTGK-V-------LGQGKVSVTN-EKGEE 154 (491)
T ss_dssp -SGGGTEEC--CCCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEEE-E-------CSSSEEEEEC-TTSCE
T ss_pred -HhhcCccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEE-E-------ecCCEEEEEe-CCCce
Confidence 11111110 01112334444443322 223333 33333222 1 1334455543 22333
Q ss_pred ceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhc
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKI 231 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 231 (1129)
....|| +|||||| +.| |.+||... .+.+ ...++...
T Consensus 155 ~~~~~d-----~lViATG--s~p--~~ipg~~~-~~~~-------------~~~~~~~~--------------------- 190 (491)
T 3urh_A 155 QVLEAK-----NVVIATG--SDV--AGIPGVEV-AFDE-------------KTIVSSTG--------------------- 190 (491)
T ss_dssp EEEECS-----EEEECCC--EEC--CCBTTBCC-CCCS-------------SSEECHHH---------------------
T ss_pred EEEEeC-----EEEEccC--CCC--CCCCCccc-ccCC-------------eeEEehhH---------------------
Confidence 567889 9999999 444 33444210 0000 00000000
Q ss_pred ccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC----------
Q psy12350 232 YFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---------- 301 (1129)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---------- 301 (1129)
...+. ...++++ | ||||++|+|+|..|++.|.+|+++++.+.+++...++
T Consensus 191 --------~~~~~-~~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~ 250 (491)
T 3urh_A 191 --------ALALE-KVPASMI-------V----VGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLT 250 (491)
T ss_dssp --------HTSCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHH
T ss_pred --------hhhhh-hcCCeEE-------E----ECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHH
Confidence 00010 0123333 3 8999999999999999999999999998876533221
Q ss_pred ----CeEEcCCceEEcCC--c--eEEcC---C--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCC
Q psy12350 302 ----NVVKKPDIAELTPT--G--VRFQD---G--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIE 367 (1129)
Q Consensus 302 ----~i~~~~~v~~~~~~--~--v~~~d---g--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~ 367 (1129)
++..+..|++++++ + +.+++ | +++++|.||+|||++++.++|. +..++..+++..+....++ .++
T Consensus 251 ~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~-~t~ 329 (491)
T 3urh_A 251 KQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHF-QTS 329 (491)
T ss_dssp HTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTC-BCS
T ss_pred hCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCC-CCC
Confidence 34455667777643 2 56653 5 4689999999999999998852 2234555554433333332 257
Q ss_pred CCCeEEecccccccc--cccccceeeehhhccc
Q psy12350 368 HPSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 368 ~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
.|++|++|.....|. .....|++.+|.++.+
T Consensus 330 ~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 362 (491)
T 3urh_A 330 IAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAG 362 (491)
T ss_dssp STTEEECGGGSSSCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEEecCCCccchhHHHHHHHHHHHHHcC
Confidence 899999998763322 1223777777776654
No 78
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=99.83 E-value=1.7e-21 Score=230.92 Aligned_cols=290 Identities=20% Similarity=0.212 Sum_probs=170.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||..|++ .+++|+|+|+++ +||+|.+ .+|. |.+...+.. .....+..+..|.
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~--~g~~V~lie~~~-~GG~~~~---~g~i----P~k~l~~~~---~~~~~~~~~~~~g 72 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQ--LGLKVLAVEAGE-VGGVCLN---VGCI----PTKALLHAA---ETLHHLKVAEGFG 72 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC-TTHHHHH---TSHH----HHHHHHHHH---HHHHHHHHHGGGT
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCC-CCCCCCC---cChH----HHHHHHHHH---HHHHHHHhHHhcC
Confidence 5899999999999999999999 568999999977 9999974 2221 111111000 0000000111111
Q ss_pred CCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++. ...++...+..+ +..+.++.++ .++.++.+. ++ .+.+.+. .....||
T Consensus 73 ~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~-------~~~v~v~------g~~~~~d 133 (464)
T 2eq6_A 73 LKA---KPELDLKKLGGWRDQVVKKLTGGVGTLLKGNGV--ELLRGFARL-VG-------PKEVEVG------GERYGAK 133 (464)
T ss_dssp EEC---CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESCEEE-EE-------TTEEEET------TEEEEEE
T ss_pred CCC---CCCcCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEeeeEEE-cc-------CCEEEEc------cEEEEeC
Confidence 110 011123333322 2334444555 566665442 22 2333332 2356789
Q ss_pred ceeeeEEEEecccCCCCCccc-cccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAE-MLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~-i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
+||+||| +.|..|+ +|+.. .+ ..+..
T Consensus 134 -----~lViATG--s~p~~p~gi~~~~--~v-----------------~~~~~--------------------------- 160 (464)
T 2eq6_A 134 -----SLILATG--SEPLELKGFPFGE--DV-----------------WDSTR--------------------------- 160 (464)
T ss_dssp -----EEEECCC--EEECCBTTBCCSS--SE-----------------ECHHH---------------------------
T ss_pred -----EEEEcCC--CCCCCCCCCCCCC--cE-----------------EcHHH---------------------------
Confidence 9999999 7788775 54310 00 00000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CC
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NN 302 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~ 302 (1129)
...+.....++++ | ||||++|+|+|..|++.|.+|+++++.+.+++...+ -+
T Consensus 161 ---~~~l~~~~~~~vv-------V----iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~ 226 (464)
T 2eq6_A 161 ---ALKVEEGLPKRLL-------V----IGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIR 226 (464)
T ss_dssp ---HTCGGGCCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCE
T ss_pred ---HHhhhhhcCCEEE-------E----ECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCE
Confidence 0001100123333 3 899999999999999999999999999877653221 13
Q ss_pred eEEcCCceEEcCC--c--eEEc-C--CC--EeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 303 VVKKPDIAELTPT--G--VRFQ-D--GS--YEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 303 i~~~~~v~~~~~~--~--v~~~-d--g~--~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
+..+..|++++++ + |.++ + |+ ++++|.||+|+|++++.+++. +..++.++++..+....+ +.+++|++|
T Consensus 227 i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iy 305 (464)
T 2eq6_A 227 VRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNAR-METSVPGVY 305 (464)
T ss_dssp EECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTT-CBCSSTTEE
T ss_pred EEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCC-cccCCCCEE
Confidence 4556678888643 2 5665 7 87 789999999999999998752 233455544433333222 225789999
Q ss_pred Eecccccccc--cccccceeeehhhccc
Q psy12350 373 IIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
++|.....|. .....||+.+|.++.+
T Consensus 306 a~GD~~~~~~l~~~A~~~g~~aa~~i~g 333 (464)
T 2eq6_A 306 AIGDAARPPLLAHKAMREGLIAAENAAG 333 (464)
T ss_dssp ECGGGTCSSCCHHHHHHHHHHHHHHHTT
T ss_pred EEeccCCCcccHHHHHHHHHHHHHHhcC
Confidence 9998854321 1123677777777764
No 79
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=99.82 E-value=2.3e-20 Score=223.70 Aligned_cols=284 Identities=11% Similarity=0.147 Sum_probs=185.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+||||||||++||.+|++ .|++|+|+|+ .+||.|..... +..+..+
T Consensus 211 ~~~dVvIIGgG~AGl~aA~~la~--~G~~v~lie~--~~GG~~~~~~~-------------------------~~~~~~~ 261 (521)
T 1hyu_A 211 DAYDVLIVGSGPAGAAAAVYSAR--KGIRTGLMGE--RFGGQVLDTVD-------------------------IENYISV 261 (521)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECS--STTGGGTTCSC-------------------------BCCBTTB
T ss_pred CcccEEEECCcHHHHHHHHHHHh--CCCeEEEEEC--CCCCccccccc-------------------------ccccCCC
Confidence 35799999999999999999999 5699999987 57999873110 0011111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.+....++.++++.+++++++ .++++++|+.++........|.+.. .. .....|| +||+|
T Consensus 262 --------~~~~~~~l~~~l~~~~~~~gv--~v~~~~~v~~i~~~~~~~~~~~V~~---~~--g~~~~~d-----~vVlA 321 (521)
T 1hyu_A 262 --------PKTEGQKLAGALKAHVSDYDV--DVIDSQSASKLVPAATEGGLHQIET---AS--GAVLKAR-----SIIIA 321 (521)
T ss_dssp --------SSBCHHHHHHHHHHHHHTSCE--EEECSCCEEEEECCSSTTSCEEEEE---TT--SCEEEEE-----EEEEC
T ss_pred --------CCCCHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEeccCCCceEEEEE---CC--CCEEEcC-----EEEEC
Confidence 124567899999999998877 7899999998864211112344432 12 2356788 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||... +.++ +.+... ..... .+.
T Consensus 322 tG--~~~~~~~ipG~~~--~~~~-------------~v~~~~----------------------------~~~~~--~~~ 354 (521)
T 1hyu_A 322 TG--AKWRNMNVPGEDQ--YRTK-------------GVTYCP----------------------------HCDGP--LFK 354 (521)
T ss_dssp CC--EEECCCCCTTTTT--TTTT-------------TEECCT----------------------------TCCGG--GGB
T ss_pred CC--CCcCCCCCCChhh--hcCc-------------eEEEee----------------------------cCchh--hcC
Confidence 99 5677777776321 1110 000000 00000 112
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCccccc------CC-C--CeEEcCCceEEcCC---
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLR------FP-N--NVVKKPDIAELTPT--- 315 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~------~~-~--~i~~~~~v~~~~~~--- 315 (1129)
+++++| ||||++|+|+|..|+..+.+|++++|.+.+.... .. . ++..+..++++.++
T Consensus 355 ~k~V~V-----------iGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~~~l~~~~gV~v~~~~~v~~i~~~~~~ 423 (521)
T 1hyu_A 355 GKRVAV-----------IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGDGSK 423 (521)
T ss_dssp TSEEEE-----------ECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHHHHHTTCTTEEEECSEEEEEEEECSSS
T ss_pred CCeEEE-----------ECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHHHHHhcCCCcEEEeCCEEEEEEcCCCc
Confidence 344444 7999999999999999999999999988764310 11 2 34445678888653
Q ss_pred --ceEEcC---CC--EeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc---cccc
Q psy12350 316 --GVRFQD---GS--YEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHE 385 (1129)
Q Consensus 316 --~v~~~d---g~--~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~ 385 (1129)
+|.+.| |+ ++++|.||+|+|++++.+++... +..++++.+....++ .++.|++|++|.....| ...+
T Consensus 424 v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~--l~~~~~G~I~Vd~~~-~ts~p~VfA~GD~~~~~~~~~~~A 500 (521)
T 1hyu_A 424 VVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGA--LERNRMGEIIIDAKC-ETSVKGVFAAGDCTTVPYKQIIIA 500 (521)
T ss_dssp EEEEEEEETTTCCEEEEECSEEEECCCEEESCGGGTTT--SCBCTTSCBCCCTTC-BCSSTTEEECSTTBCCSSCCHHHH
T ss_pred EEEEEEEeCCCCceEEEEcCEEEECcCCCCCchHHhhh--hccCCCCcEEeCCCC-CCCCCCEEEeecccCCCcceeeeh
Confidence 366764 54 57999999999999999998742 444444333222222 25789999999886543 2333
Q ss_pred ccceeeehhhcccccc
Q psy12350 386 SCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 386 ~~~~~~~a~~~~~~~~ 401 (1129)
..|++.+|.++...+.
T Consensus 501 ~~~g~~aa~~i~~~L~ 516 (521)
T 1hyu_A 501 TGEGAKASLSAFDYLI 516 (521)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 4777777777765543
No 80
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.82 E-value=9.1e-21 Score=225.65 Aligned_cols=295 Identities=14% Similarity=0.151 Sum_probs=176.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCc-----ccccccccCCcccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSS-----MYKSLKTNLPKEIM 82 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~-----~y~~l~~~~~~~~~ 82 (1129)
..+||+||||||||++||..|++ .|++|+|+|+++.+||+|.+ .+|. |.+.. .+..+...
T Consensus 5 ~~~dvvIIGaG~aGl~aA~~l~~--~g~~V~liE~~~~~GG~~~~---~g~~----p~k~l~~~~~~~~~~~~~------ 69 (470)
T 1dxl_A 5 DENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGALGGTCLN---VGCI----PSKALLHSSHMYHEAKHS------ 69 (470)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSCCSHHH---HSHH----HHHHHHHHHHHHHHHHHT------
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCccccccC---cCcc----chHHHHHHHHHHHHHHHH------
Confidence 35899999999999999999999 56899999999899999974 1221 10000 00100000
Q ss_pred ccCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 83 ELSGYHHKGHPDKSYIAAND-----------VLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~-----------~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
+..+.++. ......... +.+++..++++.++ .+++++.+. ++. ..+.+.. .++..
T Consensus 70 -~~~~g~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-~~~-------~~~~v~~-~~G~~ 135 (470)
T 1dxl_A 70 -FANHGVKV--SNVEIDLAAMMGQKDKAVSNLTRGIEGLFKKNKV--TYVKGYGKF-VSP-------SEISVDT-IEGEN 135 (470)
T ss_dssp -HHHHTEEE--SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCEEE-EET-------TEEEECC-SSSCC
T ss_pred -HHhcCccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-ecC-------CEEEEEe-CCCce
Confidence 00000000 000011122 22334555566665 677777553 332 2233322 12222
Q ss_pred ceEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhc
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKI 231 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~ 231 (1129)
....|| +||+||| +.|..|+++|.... +..+..
T Consensus 136 ~~i~~d-----~lIiAtG--s~p~~p~~~g~~~~------------------~v~~~~---------------------- 168 (470)
T 1dxl_A 136 TVVKGK-----HIIIATG--SDVKSLPGVTIDEK------------------KIVSST---------------------- 168 (470)
T ss_dssp EEEECS-----EEEECCC--EEECCBTTBCCCSS------------------SEECHH----------------------
T ss_pred EEEEcC-----EEEECCC--CCCCCCCCCCCCcc------------------cEEeHH----------------------
Confidence 457788 9999999 77888877652110 000000
Q ss_pred ccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC-----------
Q psy12350 232 YFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP----------- 300 (1129)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~----------- 300 (1129)
....+. .. +++++| ||||++|+|+|..|++.|.+|+++++.+.+++...+
T Consensus 169 -------~~~~~~--~~------~~~vvV----iGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~ 229 (470)
T 1dxl_A 169 -------GALALS--EI------PKKLVV----IGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLE 229 (470)
T ss_dssp -------HHTTCS--SC------CSEEEE----SCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHH
T ss_pred -------Hhhhhh--hc------CCeEEE----ECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHH
Confidence 000010 01 233333 899999999999999999999999999887653221
Q ss_pred ---CCeEEcCCceEEcCCc----eEEc---CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCC
Q psy12350 301 ---NNVVKKPDIAELTPTG----VRFQ---DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIE 367 (1129)
Q Consensus 301 ---~~i~~~~~v~~~~~~~----v~~~---dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~ 367 (1129)
-++..+..|+++++++ +.++ +| +++++|.||+|+|++++.++|. +..++.++++..+....++ .++
T Consensus 230 ~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~-~t~ 308 (470)
T 1dxl_A 230 KQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERF-STN 308 (470)
T ss_dssp HSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTC-BCS
T ss_pred HcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCC-ccC
Confidence 1556677788887542 4554 55 5789999999999999998842 3456766654433333332 267
Q ss_pred CCCeEEecccccccc--cccccceeeehhhccc
Q psy12350 368 HPSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 368 ~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
+|++|++|.....|. .....|++.+|.++.+
T Consensus 309 ~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 341 (470)
T 1dxl_A 309 VSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAG 341 (470)
T ss_dssp STTEEECSTTSSSCCCHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeccCCCCccHHHHHHHHHHHHHHHcC
Confidence 899999998754321 1123777777777764
No 81
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=99.82 E-value=1.2e-21 Score=240.18 Aligned_cols=309 Identities=16% Similarity=0.142 Sum_probs=175.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-C-------CcCceEecCCCCCCCCCCCCccCcccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-D-------NVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~-------~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~ 79 (1129)
..+||+|||||||||+||.+|++ .|++|+|||+. + .+||+|.+ .+|. |.+ .++... .+..
T Consensus 106 ~~~dvvVIG~GpAGl~aA~~l~~--~g~~v~liE~~~~~~~g~~~~~GG~~~~---~g~i----P~~-~l~~~~--~~~~ 173 (598)
T 2x8g_A 106 YDYDLIVIGGGSGGLAAGKEAAK--YGAKTAVLDYVEPTPIGTTWGLGGTCVN---VGCI----PKK-LMHQAG--LLSH 173 (598)
T ss_dssp SSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTHHHHH---HSHH----HHH-HHHHHH--HHHH
T ss_pred ccccEEEECCCccHHHHHHHHHh--CCCeEEEEeccCCcccccccccCceEec---cCCC----chH-HHHHHH--HHHH
Confidence 35899999999999999999999 56999999973 2 48998874 1210 100 010000 0000
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEec-eeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVN-KNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~-~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
.......|.+.........+..++.+|++.+++++.....+.+. ..|+.+.......+.|.+.+.+ .+++.....||
T Consensus 174 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~-~~g~~~~~~~d- 251 (598)
T 2x8g_A 174 ALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITD-KNQKVSTITGN- 251 (598)
T ss_dssp HHHHHHHTTCCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEEC-TTCCEEEEEEE-
T ss_pred HHhhHHhCCccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEe-CCCCeEEEEeC-
Confidence 01111111111000001346678888888777654211111111 1222222111112345555543 22222456799
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+|||||| +.|..|++||.....+ .+... + .
T Consensus 252 ----~lviAtG--s~p~~p~i~G~~~~~~------------------~~~~~----------------------~----~ 281 (598)
T 2x8g_A 252 ----KIILATG--ERPKYPEIPGAVEYGI------------------TSDDL----------------------F----S 281 (598)
T ss_dssp ----EEEECCC--EEECCCSSTTHHHHCE------------------EHHHH----------------------T----T
T ss_pred ----EEEEeCC--CCCCCCCCCCcccceE------------------cHHHH----------------------h----h
Confidence 9999999 7899998887321100 00000 0 0
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~ 304 (1129)
+. ...++++| ||||++|+|+|..|++.|.+||+++|. .+++...+ -++.
T Consensus 282 ----~~-~~~~~vvV-----------iGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~~~~~~~~~l~~~gv~i~ 344 (598)
T 2x8g_A 282 ----LP-YFPGKTLV-----------IGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQMAEKVGDYMENHGVKFA 344 (598)
T ss_dssp ----CS-SCCCSEEE-----------ECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred ----Cc-cCCCEEEE-----------ECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHHHHHHHHHHHHhCCCEEE
Confidence 00 11234444 799999999999999999999999997 44332211 1344
Q ss_pred EcCCceEE--------cC---Cce--E--EcCCCEee--cCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccC
Q psy12350 305 KKPDIAEL--------TP---TGV--R--FQDGSYEQ--VDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINI 366 (1129)
Q Consensus 305 ~~~~v~~~--------~~---~~v--~--~~dg~~~~--~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~ 366 (1129)
....++++ ++ +.+ . +.+|++++ +|.||+|+|++++.++|. +..++.++++..+....+ +.+
T Consensus 345 ~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t 423 (598)
T 2x8g_A 345 KLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVCTDD-EQT 423 (598)
T ss_dssp ETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCCCTT-SBC
T ss_pred ECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEeCCC-CcC
Confidence 44444454 22 223 2 35887664 999999999999998853 344566655443333333 236
Q ss_pred CCCCeEEeccccc--ccc-cccccceeeehhhccc
Q psy12350 367 EHPSMCIIGYTYR--YPF-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 367 ~~p~l~~~G~~~~--~~~-~~~~~~~~~~a~~~~~ 398 (1129)
+.|++|++|.... ..+ ..+..||+.+|.++.+
T Consensus 424 s~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 458 (598)
T 2x8g_A 424 TVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFA 458 (598)
T ss_dssp SSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhc
Confidence 7899999998832 111 1223788888887764
No 82
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=99.82 E-value=7.3e-21 Score=226.13 Aligned_cols=299 Identities=13% Similarity=0.142 Sum_probs=173.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc-cCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME-LSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~-~~d~ 87 (1129)
.+||+|||||+||++||..|++ .|++|+|+|+++.+||+|.+ .+|. |.+...+.. .....+.. +..+
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~---~g~~----psk~l~~~~---~~~~~~~~~~~~~ 69 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQ--LGMKTACVEKRGALGGTCLN---VGCI----PSKALLHAT---HLYHDAHANFARY 69 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHH---HSHH----HHHHHHHHH---HHHHHHHHTHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCcCCC---cCcH----hHHHHHHHH---HHHHHHHHHHHhc
Confidence 3799999999999999999999 56899999999899999984 1221 111000000 00000000 0001
Q ss_pred CCCCCCCCCCCCHHHHHH-----------HHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 88 HHKGHPDKSYIAANDVLE-----------YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~-----------yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
.++.. .....+..++.. .+..+.++.++ .++.++.+. ++. +.+.+.. .++......|
T Consensus 70 g~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~~~-i~~-------~~~~v~~-~~G~~~~~~~ 137 (468)
T 2qae_A 70 GLMGG-EGVTMDSAKMQQQKERAVKGLTGGVEYLFKKNKV--TYYKGEGSF-ETA-------HSIRVNG-LDGKQEMLET 137 (468)
T ss_dssp TEECG-GGCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEEEEEEE-EET-------TEEEEEE-TTSCEEEEEE
T ss_pred CcccC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-eeC-------CEEEEEe-cCCceEEEEc
Confidence 00000 000112233322 23445555555 666666442 332 3334432 1222245789
Q ss_pred cceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccc
Q psy12350 157 DLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESF 236 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 236 (1129)
| +||+||| +.|..|+++|.... +..+..
T Consensus 138 d-----~lviAtG--~~p~~p~~~g~~~~------------------~v~t~~--------------------------- 165 (468)
T 2qae_A 138 K-----KTIIATG--SEPTELPFLPFDEK------------------VVLSST--------------------------- 165 (468)
T ss_dssp E-----EEEECCC--EEECCBTTBCCCSS------------------SEECHH---------------------------
T ss_pred C-----EEEECCC--CCcCCCCCCCCCcC------------------ceechH---------------------------
Confidence 9 9999999 78888877652100 000000
Q ss_pred cccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccC---------------CC
Q psy12350 237 ARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRF---------------PN 301 (1129)
Q Consensus 237 ~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~---------------~~ 301 (1129)
....+. ...++++ | ||||++|+|+|..|++.|.+|+++++.+.+++... .-
T Consensus 166 --~~~~~~-~~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~gv 231 (468)
T 2qae_A 166 --GALALP-RVPKTMV-------V----IGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEKM 231 (468)
T ss_dssp --HHHTCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCC
T ss_pred --HHhhcc-cCCceEE-------E----ECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCCc
Confidence 000010 0123333 3 89999999999999999999999999987765211 11
Q ss_pred CeEEcCCceEEcCC--c--eEEc--CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeE
Q psy12350 302 NVVKKPDIAELTPT--G--VRFQ--DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~--~--v~~~--dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
++..+..|++++++ + +.++ || +++++|.||+|+|++++.++|. +..++.++++..+....++ -+++|++|
T Consensus 232 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~-~t~~~~Iy 310 (468)
T 2qae_A 232 KFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHF-ETSIPDVY 310 (468)
T ss_dssp EEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEE
T ss_pred EEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCc-ccCCCCEE
Confidence 34556778888643 2 4555 67 5789999999999999998853 2344555544333322222 25789999
Q ss_pred Eeccccc-cc-c-cccccceeeehhhccc
Q psy12350 373 IIGYTYR-YP-F-LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 373 ~~G~~~~-~~-~-~~~~~~~~~~a~~~~~ 398 (1129)
++|.... .| + .....||+.+|.++.+
T Consensus 311 A~GD~~~~~~~~~~~A~~~g~~aa~~i~~ 339 (468)
T 2qae_A 311 AIGDVVDKGPMLAHKAEDEGVACAEILAG 339 (468)
T ss_dssp ECGGGBSSSCSCHHHHHHHHHHHHHHHTT
T ss_pred EeeccCCCCCccHhHHHHHHHHHHHHHcC
Confidence 9998765 32 2 1223777777777654
No 83
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=99.82 E-value=4.9e-21 Score=213.61 Aligned_cols=266 Identities=11% Similarity=0.048 Sum_probs=174.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC-CCCCCCCCCCCccccccCccccccc---------c
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT-EHIGCDQYGLPVHSSMYKSLKTNLP---------K 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~-~~~g~~~~g~p~~~~~y~~~~~~~~---------~ 809 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+++..++.+... .+++.. ..+ ...+...+..... .
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~v~~~~~ 77 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGRAR--KNILLVDAGERRNRFASHSHGFLGQD--GKA-PGEIIAEARRQIERYPTIHWVEG 77 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECCCCGGGGCSCCCSSTTCT--TCC-HHHHHHHHHHHHTTCTTEEEEES
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCcccccchhhcCCcCCC--CCC-HHHHHHHHHHHHHhcCCeEEEEe
Confidence 46899999999999999999999 9999999977555544221 122210 000 0000000000000 0
Q ss_pred cccccc--C--CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHH
Q psy12350 810 DLMELC--G--YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDIT 885 (1129)
Q Consensus 810 ~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA 885 (1129)
...... + +.........+.....++.+|+.|+.|++||++.|.+..+|++.+.+...+++|+|+|||+|.+|+|+|
T Consensus 78 ~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e~a 157 (297)
T 3fbs_A 78 RVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGYELDQGKIGVIAASPMAIHHA 157 (297)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTGGGTTCEEEEECCSTTHHHHH
T ss_pred EEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcchhhcCCEEEEEecCccHHHHH
Confidence 000000 0 000000011122223344499999999999998887777787777666677899999999999999999
Q ss_pred HHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcC-CeeEEeCC-cEEecCCcEeeccEE
Q psy12350 886 LDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP-DVAELTPT-GVRFQDGSYEQVDII 963 (1129)
Q Consensus 886 ~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-~i~~v~~~-~V~~~dG~~~~~D~V 963 (1129)
..|++.+ +|+++.+.... +...+. +.+. ..+|++.. .|++++++ .|++.||+++++|.|
T Consensus 158 ~~l~~~g-~v~~v~~~~~~--~~~~~~-------------~~l~---~~gv~i~~~~v~~i~~~~~v~~~~g~~~~~D~v 218 (297)
T 3fbs_A 158 LMLPDWG-ETTFFTNGIVE--PDADQH-------------ALLA---ARGVRVETTRIREIAGHADVVLADGRSIALAGL 218 (297)
T ss_dssp HHGGGTS-EEEEECTTTCC--CCHHHH-------------HHHH---HTTCEEECSCEEEEETTEEEEETTSCEEEESEE
T ss_pred HHhhhcC-cEEEEECCCCC--CCHHHH-------------HHHH---HCCcEEEcceeeeeecCCeEEeCCCCEEEEEEE
Confidence 9999998 99999875431 111000 0111 12566654 38888877 799999999999999
Q ss_pred EEccCccCcCCCCCCCCCeeecCC--c-ccccccceeecCCCCcEEEccccc-cchhHHHHHHHHHHHHHHc
Q psy12350 964 LCCTGYSNHYPFLHESCGIKVVNK--N-VQPLYKHTINIEHPTMFILGVPRH-TLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 964 I~aTG~~~~~~fl~~~~g~~~~~~--~-~~~ly~~~~~~~~p~l~~iG~~~~-~~~~~~~e~qa~~~a~~l~ 1031 (1129)
|+|||++|+.+++.. ++++++.. + ...+..+ +.++.||||++|++.. ......+..||+.+|..+.
T Consensus 219 i~a~G~~p~~~~~~~-~g~~~~~~~~G~~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~A~~~g~~aa~~i~ 288 (297)
T 3fbs_A 219 FTQPKLRITVDWIEK-LGCAVEEGPMGSTIVTDPM-KQTTARGIFACGDVARPAGSVALAVGDGAMAGAAAH 288 (297)
T ss_dssp EECCEEECCCSCHHH-HTCCEEEETTEEEECCCTT-CBCSSTTEEECSGGGCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEccCcccCchhHHh-cCCccccCCCCceEEeCCC-CccCCCCEEEEeecCCchHHHHHHHHhHHHHHHHHH
Confidence 999999999887654 56665532 2 2233333 4578999999999987 4567888889998887764
No 84
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.82 E-value=8.7e-21 Score=224.60 Aligned_cols=295 Identities=16% Similarity=0.164 Sum_probs=174.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+||||||||++||.+|++ .|++|+|+|++ .+||+|.+ .+|. |.+ .+.... .....+..+..+.
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~-~~gG~~~~---~g~~----p~k-~l~~~~--~~~~~~~~~~~~g 69 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKG-NLGGVCLN---VGCI----PSK-ALISAS--HRYEQAKHSEEMG 69 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHH---TSHH----HHH-HHHHHH--HHHHHHHTCGGGT
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECC-CCCCcCcC---cCch----hhH-HHHHHH--HHHHHHHHHHhcC
Confidence 4789999999999999999999 56899999997 89999974 1221 100 000000 0000000011111
Q ss_pred CCCCCCCCCCCHHH-----------HHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 89 HKGHPDKSYIAAND-----------VLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~-----------~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
++. .....+... +.+++.+++++.++ .++.++.+. ++. ..+.+... ++ .....||
T Consensus 70 ~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~-id~-------~~v~V~~~-~G-~~~i~~d 135 (455)
T 1ebd_A 70 IKA--ENVTIDFAKVQEWKASVVKKLTGGVEGLLKGNKV--EIVKGEAYF-VDA-------NTVRVVNG-DS-AQTYTFK 135 (455)
T ss_dssp EEC--CSCEECHHHHHHHHHHHHHHHHHHHHHHHHTTTC--EEEESEEEE-EET-------TEEEEEET-TE-EEEEECS
T ss_pred ccc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEE-ccC-------CeEEEEeC-CC-cEEEEeC
Confidence 100 000011222 33444556666665 677777553 332 23333321 11 1456789
Q ss_pred ceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
+||+||| +.|..|+++|.... + ..+...
T Consensus 136 -----~lViATG--s~p~~~~~~g~~~~-v-----------------~~~~~~--------------------------- 163 (455)
T 1ebd_A 136 -----NAIIATG--SRPIELPNFKFSNR-I-----------------LDSTGA--------------------------- 163 (455)
T ss_dssp -----EEEECCC--EEECCBTTBCCCSS-E-----------------ECHHHH---------------------------
T ss_pred -----EEEEecC--CCCCCCCCCCccce-E-----------------ecHHHH---------------------------
Confidence 9999999 77888877652100 0 000000
Q ss_pred ccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCe
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNV 303 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i 303 (1129)
. .+. ...++++ | ||||++|+|+|..|++.|.+|+++++.+.+++...+ -++
T Consensus 164 ~---~~~-~~~~~vv-------V----iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i 228 (455)
T 1ebd_A 164 L---NLG-EVPKSLV-------V----IGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEV 228 (455)
T ss_dssp H---TCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEE
T ss_pred h---ccc-cCCCeEE-------E----ECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEE
Confidence 0 010 0123333 3 899999999999999999999999998877653221 145
Q ss_pred EEcCCceEEcCC--c--eEEc---CCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEec
Q psy12350 304 VKKPDIAELTPT--G--VRFQ---DGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIG 375 (1129)
Q Consensus 304 ~~~~~v~~~~~~--~--v~~~---dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G 375 (1129)
..+..|++++++ + +.++ +++++++|.||+|+|++++.++|. +..++.++++..+....++ .+++|++|++|
T Consensus 229 ~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~G 307 (455)
T 1ebd_A 229 VTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQC-RTSVPNIFAIG 307 (455)
T ss_dssp EESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTC-BCSSTTEEECG
T ss_pred EeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCc-ccCCCCEEEEe
Confidence 566778888643 3 3444 456789999999999999999852 3456766654433333332 26789999999
Q ss_pred ccccccc--cccccceeeehhhccc
Q psy12350 376 YTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 376 ~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
.....|. .....|++.+|.++.+
T Consensus 308 D~~~~~~~~~~A~~~g~~aa~~i~~ 332 (455)
T 1ebd_A 308 DIVPGPALAHKASYEGKVAAEAIAG 332 (455)
T ss_dssp GGSSSCCCHHHHHHHHHHHHHHHTS
T ss_pred ccCCCcccHHHHHHHHHHHHHHHcC
Confidence 8854321 1223777777777763
No 85
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=99.82 E-value=5.1e-21 Score=227.18 Aligned_cols=291 Identities=11% Similarity=0.105 Sum_probs=174.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCc-----ccccccccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSS-----MYKSLKTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~-----~y~~l~~~~~~~~~~ 83 (1129)
.+||+||||||||++||..|++ .|++|+|+||+ .+||+|.+. +|. |.+.. .++.+.. .
T Consensus 3 ~~dvvIIGaG~aGl~aA~~l~~--~G~~V~liE~~-~~gG~~~~~---g~~----psk~ll~~~~~~~~~~~-------~ 65 (464)
T 2a8x_A 3 HYDVVVLGAGPGGYVAAIRAAQ--LGLSTAIVEPK-YWGGVCLNV---GCI----PSKALLRNAELVHIFTK-------D 65 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS-CTTHHHHHH---SHH----HHHHHHHHHHHHHHHHH-------H
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCC-CCCCccccc---Cch----hhHHHHHHHHHHHHHHH-------H
Confidence 4799999999999999999999 56999999997 799999741 110 10000 0111100 0
Q ss_pred cCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 84 LSGYHHKGHPDKSYIAAND-----------VLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~-----------~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
+..+.++. . ...+... +.+++.+++++.++ .+++++.+. ++ .+.+.+.. .++...
T Consensus 66 ~~~~g~~~--~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv--~~~~g~~~~-id-------~~~v~V~~-~~G~~~ 131 (464)
T 2a8x_A 66 AKAFGISG--E-VTFDYGIAYDRSRKVAEGRVAGVHFLMKKNKI--TEIHGYGTF-AD-------ANTLLVDL-NDGGTE 131 (464)
T ss_dssp TTTTTEEE--C-CEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEECEEEEE-SS-------SSEEEEEE-TTSCCE
T ss_pred HHhcCCCC--C-CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-ec-------CCeEEEEe-CCCceE
Confidence 11111110 0 0111222 23344556666665 677777553 22 23344432 122224
Q ss_pred eEEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcc
Q psy12350 153 FYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIY 232 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 232 (1129)
...|| +||+||| +.|..|+++|.... + ..+...
T Consensus 132 ~~~~d-----~lViAtG--~~~~~~~~~g~~~~-~-----------------~~~~~~---------------------- 164 (464)
T 2a8x_A 132 SVTFD-----NAIIATG--SSTRLVPGTSLSAN-V-----------------VTYEEQ---------------------- 164 (464)
T ss_dssp EEEEE-----EEEECCC--EEECCCTTCCCBTT-E-----------------ECHHHH----------------------
T ss_pred EEEcC-----EEEECCC--CCCCCCCCCCCCce-E-----------------EecHHH----------------------
Confidence 57789 9999999 67777776552100 0 000000
Q ss_pred cccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC-----------
Q psy12350 233 FESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN----------- 301 (1129)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~----------- 301 (1129)
. .+. ...++++ | ||||++|+|+|..|++.|.+||+++|.+.+++...++
T Consensus 165 -----~---~~~-~~~~~vv-------V----iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~ 224 (464)
T 2a8x_A 165 -----I---LSR-ELPKSII-------I----AGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKK 224 (464)
T ss_dssp -----H---TCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHH
T ss_pred -----h---hcc-ccCCeEE-------E----ECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHH
Confidence 0 010 0123333 3 8999999999999999999999999998876632221
Q ss_pred ---CeEEcCCceEEcCC--c--eEEc-CC--CEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCC
Q psy12350 302 ---NVVKKPDIAELTPT--G--VRFQ-DG--SYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPS 370 (1129)
Q Consensus 302 ---~i~~~~~v~~~~~~--~--v~~~-dg--~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~ 370 (1129)
++..+..|++++++ + +.++ +| +++++|.||+|+|++++.++|. +..++.++++..+....++ -+++|+
T Consensus 225 ~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~-~t~~~~ 303 (464)
T 2a8x_A 225 LGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYM-RTNVGH 303 (464)
T ss_dssp HTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTS-BCSSTT
T ss_pred cCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCC-ccCCCC
Confidence 45567788888643 2 4454 67 5689999999999999998853 2344555544333332332 267899
Q ss_pred eEEecccccccc--cccccceeeehhhccc
Q psy12350 371 MCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 371 l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
+|++|.....|. .....|++.+|.++.+
T Consensus 304 IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 304 IYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp EEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred EEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 999998854321 1223777777777753
No 86
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=99.82 E-value=9.6e-21 Score=214.92 Aligned_cols=268 Identities=14% Similarity=0.141 Sum_probs=176.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccc-----cccCccccccc-----
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHS-----SMYKSLKTNLP----- 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~-----~~y~~~~~~~~----- 808 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+++.+||.|.. .+|+...++.+... .+...+.....
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gG~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGMRQ--ASVKIIESLPQLGGQLSA-LYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQT 83 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHH-HCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCE
T ss_pred cceEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceehh-cCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCc
Confidence 357899999999999999999999 999999999999999953 22222111111000 00000000000
Q ss_pred ----ccccccc---C--CCCCCCCCCCCCChhhhhhccC---CCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEc
Q psy12350 809 ----KDLMELC---G--YGHKGNADKSYIGAKDVLENYN---HPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVG 876 (1129)
Q Consensus 809 ----~~~~~~~---~--~~~~~~~~~~~~~~~~v~~~~~---~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG 876 (1129)
....... + +..... ...+.....++.+|+ .|+.|++||.+.|.+..+|+ .+.+...+++|+|+|||
T Consensus 84 ~~~~~~v~~i~~~~~~~~~v~~~-~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~~~~~~~v~vvG 161 (332)
T 3lzw_A 84 ICLEQAVESVEKQADGVFKLVTN-EETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQKFAGRRVAILG 161 (332)
T ss_dssp EECSCCEEEEEECTTSCEEEEES-SEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGGGGBTCEEEEEC
T ss_pred EEccCEEEEEEECCCCcEEEEEC-CCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHHHcCCCEEEEEC
Confidence 0000000 0 000000 000111223334888 89999999999888888888 77777778899999999
Q ss_pred CCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----E
Q psy12350 877 SGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----V 950 (1129)
Q Consensus 877 ~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V 950 (1129)
+|.+|+|+|..|++.+.+|+++.+.+........+.. + ...+|++..+ +.+++.++ |
T Consensus 162 ~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~~--------------l---~~~gv~~~~~~~v~~i~~~~~~~~v 224 (332)
T 3lzw_A 162 GGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVEN--------------L---HASKVNVLTPFVPAELIGEDKIEQL 224 (332)
T ss_dssp SSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHHH--------------H---HHSSCEEETTEEEEEEECSSSCCEE
T ss_pred CCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHHH--------------H---hcCCeEEEeCceeeEEecCCceEEE
Confidence 9999999999999999999999887654333221111 0 0126777764 88887654 7
Q ss_pred EecC-----CcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc----cchhHHHHH
Q psy12350 951 RFQD-----GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH----TLLFNLFDL 1021 (1129)
Q Consensus 951 ~~~d-----G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~----~~~~~~~e~ 1021 (1129)
.+.+ ++++++|.||+|+|++|+.+++.. +++.+++.++ .+.. .+.++.||||++|++.. ......+..
T Consensus 225 ~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~-~~~~~~~g~i-~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~ 301 (332)
T 3lzw_A 225 VLEEVKGDRKEILEIDDLIVNYGFVSSLGPIKN-WGLDIEKNSI-VVKS-TMETNIEGFFAAGDICTYEGKVNLIASGFG 301 (332)
T ss_dssp EEEETTSCCEEEEECSEEEECCCEECCCGGGGG-SSCCEETTEE-ECCT-TSBCSSTTEEECGGGEECTTCCCCHHHHHH
T ss_pred EEEecCCCceEEEECCEEEEeeccCCCchHHhh-cCccccCCeE-EeCC-CCceecCCEEEccceecCCCCcceEeeehh
Confidence 7776 456899999999999999888765 6666643333 3333 23458999999999863 234677777
Q ss_pred HHHHHHHHHc
Q psy12350 1022 QVRLFQQLMQ 1031 (1129)
Q Consensus 1022 qa~~~a~~l~ 1031 (1129)
||+.+|..+.
T Consensus 302 ~g~~aa~~i~ 311 (332)
T 3lzw_A 302 EAPTAVNNAK 311 (332)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8888777654
No 87
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=99.82 E-value=1.1e-20 Score=223.65 Aligned_cols=293 Identities=15% Similarity=0.157 Sum_probs=174.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
+||+||||||||++||..|++ .|++|+|+|+++.+||+|.+ .+| .....++.... ....+.. ..|.+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~---~g~-----~p~k~l~~~~~--~~~~~~~-~~~g~ 68 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQ--LGMKVGVVEKEKALGGTCLR---VGC-----IPSKALLETTE--RIYEAKK-GLLGA 68 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHH---HSH-----HHHHHHHHHHH--HHHHHHH-CCTTE
T ss_pred CCEEEECCChhHHHHHHHHHH--CCCeEEEEeCCCCCCCccce---ecc-----hhHHHHHHHHH--HHHHHhh-hcCCc
Confidence 699999999999999999999 56899999999899999984 122 11101110000 0000000 11111
Q ss_pred CCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecc
Q psy12350 90 KGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 158 (1129)
+. .....+..++..+ +..+.++.++ .++.++.+. + +.+.+.+.+ + .....||
T Consensus 69 ~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v--~~~~g~~~~-i-------~~~~~~v~~--~--g~~~~~d- 131 (455)
T 2yqu_A 69 KV--KGVELDLPALMAHKDKVVQANTQGVEFLFKKNGI--ARHQGTARF-L-------SERKVLVEE--T--GEELEAR- 131 (455)
T ss_dssp EE--CCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTC--EEEESCEEE-S-------SSSEEEETT--T--CCEEEEE-
T ss_pred cc--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEeEEEE-e-------cCCeEEEee--C--CEEEEec-
Confidence 10 0001123333333 2344444554 556555432 2 223444432 1 2457899
Q ss_pred eeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccc
Q psy12350 159 QVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFAR 238 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 238 (1129)
+||+||| +.|..|+++|.....+ ..+..+ .
T Consensus 132 ----~lviAtG--~~p~~~~~~g~~~~~v-----------------~~~~~~---------------------------~ 161 (455)
T 2yqu_A 132 ----YILIATG--SAPLIPPWAQVDYERV-----------------VTSTEA---------------------------L 161 (455)
T ss_dssp ----EEEECCC--EEECCCTTBCCCSSSE-----------------ECHHHH---------------------------T
T ss_pred ----EEEECCC--CCCCCCCCCCCCcCcE-----------------echHHh---------------------------h
Confidence 9999999 7788887765210000 000000 0
Q ss_pred cccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCC--------------CCeE
Q psy12350 239 CSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFP--------------NNVV 304 (1129)
Q Consensus 239 ~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~--------------~~i~ 304 (1129)
.+. ...++++ | ||||++|+|+|..|++.|.+|+++++.+.+++...+ -++.
T Consensus 162 ---~~~-~~~~~vv-------I----iGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~ 226 (455)
T 2yqu_A 162 ---SFP-EVPKRLI-------V----VGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERVFKKQGLTIR 226 (455)
T ss_dssp ---CCS-SCCSEEE-------E----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred ---ccc-cCCCeEE-------E----ECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence 010 0123333 3 899999999999999999999999998877653221 1456
Q ss_pred EcCCceEEcCC--c--eEEcCCCEeecCEEEEcccccccCCCCC-CCCCeEeecCcccccccccccCCCCCeEEeccccc
Q psy12350 305 KKPDIAELTPT--G--VRFQDGSYEQVDIILYCTGYTYRYPFLH-ESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYR 379 (1129)
Q Consensus 305 ~~~~v~~~~~~--~--v~~~dg~~~~~D~VI~atG~~~~~~~l~-~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~ 379 (1129)
.+..|++++.+ + +.++||+++++|.||+|+|++++.+++. +..++.++++..+.+..+ +.++.|++|++|....
T Consensus 227 ~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~iya~GD~~~ 305 (455)
T 2yqu_A 227 TGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEH-LRTRVPHIYAIGDVVR 305 (455)
T ss_dssp CSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTT-SBCSSTTEEECGGGSS
T ss_pred ECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCC-cccCCCCEEEEecCCC
Confidence 67788888643 3 4556888999999999999999988742 234555554433333333 2357899999998754
Q ss_pred ccc--cccccceeeehhhccc
Q psy12350 380 YPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 380 ~~~--~~~~~~~~~~a~~~~~ 398 (1129)
.|. .....|++.+|.++.+
T Consensus 306 ~~~~~~~A~~~g~~aa~~i~~ 326 (455)
T 2yqu_A 306 GPMLAHKASEEGIAAVEHMVR 326 (455)
T ss_dssp SCCCHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHhHHHHHHHHcC
Confidence 322 1123777777777764
No 88
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=99.82 E-value=2e-20 Score=210.22 Aligned_cols=274 Identities=14% Similarity=0.082 Sum_probs=162.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccccc-Ccccccccccccccc---
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMY-KSLKTNLPKDLMELC--- 815 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y-~~~~~~~~~~~~~~~--- 815 (1129)
.+++|||+||+|++||.+|.+.| ++|+|||+ +.+||+|... +|-. ++|...... ..+..........+.
T Consensus 7 yDvvIIG~GpAGl~aA~~l~~~g--~~V~liE~-~~~gG~~~~~---~~i~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (312)
T 4gcm_A 7 FDIAIIGAGPAGMTAAVYASRAN--LKTVMIER-GIPGGQMANT---EEVE-NFPGFEMITGPDLSTKMFEHAKKFGAVY 79 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SCTTGGGGGC---SCBC-CSTTCSSBCHHHHHHHHHHHHHHTTCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEec-CCCCCeeecc---cccC-CcCCccccchHHHHHHHHHHHhhccccc
Confidence 57899999999999999999999 99999998 4689988643 2210 111100000 000000000000000
Q ss_pred --C----------CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 816 --G----------YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 816 --~----------~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
. ...-......+.....++.+|+.|+.|++||.+.+.++.+++....+...+++|+|+|||+|++|+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~vvViGgG~ig~E 159 (312)
T 4gcm_A 80 QYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVE 159 (312)
T ss_dssp EECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHH
T ss_pred cceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCccccCCCEEEEECCCHHHHH
Confidence 0 0000000112222334455999999999999998888777776666666678999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhcccc--EEEEecCCccccccCCCCCeEEcCC-eeEEeCCcEEecCCcEeec
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRAS--TVFLSHHSERVTSLCLPNNVVLKPD-VAELTPTGVRFQDGSYEQV 960 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~V~~~~~-i~~v~~~~V~~~dG~~~~~ 960 (1129)
+|..|++.|++||++++.+..++.........+ ....... ... ..+..... ............++..+++
T Consensus 160 ~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (312)
T 4gcm_A 160 EGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWS--HTL-----KSINEKDGKVGSVTLTSTKDGSEETHEA 232 (312)
T ss_dssp HHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECS--EEE-----EEEEEETTEEEEEEEEETTTCCEEEEEC
T ss_pred HHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeee--cce-----eeeeccccccccceeeeecCCceeEEee
Confidence 999999999999999987765543221111000 0000000 000 00000000 0000000011123446799
Q ss_pred cEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHHH
Q psy12350 961 DIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 961 D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l 1030 (1129)
|.|++++|.+++..++.. .++..+...+ .+. ..+.++.||||++||+... .....+..|++.+|..+
T Consensus 233 d~v~~~~g~~~~~~~~~~-~g~~~~~G~I-~vd-~~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i 301 (312)
T 4gcm_A 233 DGVFIYIGMKPLTAPFKD-LGITNDVGYI-VTK-DDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSA 301 (312)
T ss_dssp SEEEECSCEEESCGGGGG-GTCBCTTSCB-CCC-TTSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHH
T ss_pred eeEEeecCCCcCchhHHh-cceecCCCeE-eeC-CCCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHH
Confidence 999999999999776654 5555443322 222 2345689999999998753 34577888888888765
No 89
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=99.82 E-value=2.3e-21 Score=231.14 Aligned_cols=133 Identities=14% Similarity=0.115 Sum_probs=95.7
Q ss_pred CCCCCCcccchhhhcccccEEEEccccCCcccccCCC--------------CeEEcCCceEEcCC--c--eEEcCC---C
Q psy12350 265 AANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN--------------NVVKKPDIAELTPT--G--VRFQDG---S 323 (1129)
Q Consensus 265 vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~--------------~i~~~~~v~~~~~~--~--v~~~dg---~ 323 (1129)
||+|++|+|+|..|++.|.+|+++++.+.+++...+. ++..+..|++++.+ + +.+.++ +
T Consensus 186 iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~ 265 (476)
T 3lad_A 186 IGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEK 265 (476)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESSSEEE
T ss_pred ECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcE
Confidence 8999999999999999999999999998876633221 45567788888643 2 667765 5
Q ss_pred EeecCEEEEcccccccCCCC-CCCCCeEeecCcccccccccccCCCCCeEEecccccccc--cccccceeeehhhccc
Q psy12350 324 YEQVDIILYCTGYTYRYPFL-HESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 324 ~~~~D~VI~atG~~~~~~~l-~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
++++|.||+|+|++++.++| -+..++.++++..+....++ .++.|++|++|.....|. .....|++.+|.++.+
T Consensus 266 ~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~-~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g 342 (476)
T 3lad_A 266 SQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYC-ATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAG 342 (476)
T ss_dssp EEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTS-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred EEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCc-ccCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcC
Confidence 68999999999999999864 34566777665443333332 267899999998763322 1223777777777653
No 90
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=99.81 E-value=1.7e-20 Score=213.54 Aligned_cols=271 Identities=12% Similarity=0.081 Sum_probs=175.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcc----cCCcCcccccCC----CCCCCCCCCCccccccCcccc-----
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ----ADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT----- 805 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~----~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~----- 805 (1129)
.-+++|||+|++|+++|..|.+.| ++|+|||+ +..+||.|.... +++... .+. ...+...+..
T Consensus 22 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~ 97 (338)
T 3itj_A 22 HNKVTIIGSGPAAHTAAIYLARAE--IKPILYEGMMANGIAAGGQLTTTTEIENFPGFPD-GLT-GSELMDRMREQSTKF 97 (338)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTT-CEE-HHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEecCCCCCCCcCcccccchhhcccCCCcc-cCC-HHHHHHHHHHHHHHc
Confidence 457899999999999999999999 99999999 448999998543 222110 000 0000000000
Q ss_pred ccc---ccccccc--C--CCCCC---CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC--CCCCCeEE
Q psy12350 806 NLP---KDLMELC--G--YGHKG---NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE--PFAGKQAV 873 (1129)
Q Consensus 806 ~~~---~~~~~~~--~--~~~~~---~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~--~~~gk~Vv 873 (1129)
+.. ....... . +.... .....+.....++.+|+.|+.|++||.+.|.+..+|+..+.+.. .+.+|+|+
T Consensus 98 gv~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 177 (338)
T 3itj_A 98 GTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLA 177 (338)
T ss_dssp TCEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEE
T ss_pred CCEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEE
Confidence 000 0000000 0 00000 00111222233445899999999999887766667765544433 56799999
Q ss_pred EEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc--
Q psy12350 874 VVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-- 949 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-- 949 (1129)
|||+|.+|+|+|..|++.+.+|+++.+.+....... +. ..+.. ..+|++..+ +.+++.++
T Consensus 178 vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~-~~-------------~~l~~--~~gv~i~~~~~v~~i~~~~~~ 241 (338)
T 3itj_A 178 VIGGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTI-MQ-------------KRAEK--NEKIEILYNTVALEAKGDGKL 241 (338)
T ss_dssp EECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHH-HH-------------HHHHH--CTTEEEECSEEEEEEEESSSS
T ss_pred EECCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHH-HH-------------HHHHh--cCCeEEeecceeEEEEcccCc
Confidence 999999999999999999999999988654332100 00 00000 126777765 78886543
Q ss_pred ---EEecC-----CcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHH
Q psy12350 950 ---VRFQD-----GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLF 1019 (1129)
Q Consensus 950 ---V~~~d-----G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~ 1019 (1129)
|++.+ ++++++|.||+|||++|+.+++.. ++.+++++...+......++.||||++|++... .....+
T Consensus 242 ~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~~--~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A 319 (338)
T 3itj_A 242 LNALRIKNTKKNEETDLPVSGLFYAIGHTPATKIVAG--QVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITS 319 (338)
T ss_dssp EEEEEEEETTTTEEEEEECSEEEECSCEEECCGGGBT--TBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHH
T ss_pred EEEEEEEECCCCceEEEEeCEEEEEeCCCCChhHhhC--ceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeee
Confidence 77766 457899999999999999887765 677776555443344556789999999999853 456777
Q ss_pred HHHHHHHHHHHc
Q psy12350 1020 DLQVRLFQQLMQ 1031 (1129)
Q Consensus 1020 e~qa~~~a~~l~ 1031 (1129)
..||+.+|..+.
T Consensus 320 ~~~g~~aa~~i~ 331 (338)
T 3itj_A 320 AGSGCMAALDAE 331 (338)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 788888877654
No 91
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=99.81 E-value=2.9e-21 Score=226.42 Aligned_cols=284 Identities=14% Similarity=0.138 Sum_probs=173.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+.+.+||+|.|. +++|
T Consensus 121 ~~~~V~IIGgGpAGl~aA~~L~~--~G~~V~v~e~~~~~GG~l~~g------------------------------ip~~ 168 (456)
T 2vdc_G 121 LGLSVGVIGAGPAGLAAAEELRA--KGYEVHVYDRYDRMGGLLVYG------------------------------IPGF 168 (456)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSCSTHHHHT------------------------------SCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCeeeec------------------------------CCCc
Confidence 35799999999999999999999 569999999999999998851 1111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
....++.++..++.+++++ .+++++.|.. .+++ .. ....|| +||+|
T Consensus 169 ----------~~~~~~~~~~~~~l~~~gv--~~~~~~~v~~-----------~v~~---~~---~~~~~d-----~vvlA 214 (456)
T 2vdc_G 169 ----------KLEKSVVERRVKLLADAGV--IYHPNFEVGR-----------DASL---PE---LRRKHV-----AVLVA 214 (456)
T ss_dssp ----------TSCHHHHHHHHHHHHHTTC--EEETTCCBTT-----------TBCH---HH---HHSSCS-----EEEEC
T ss_pred ----------cCCHHHHHHHHHHHHHCCc--EEEeCCEecc-----------EEEh---hH---hHhhCC-----EEEEe
Confidence 1123566777777788877 7888877631 1111 11 113489 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccc--cc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSED--FT 244 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~ 244 (1129)
||.. .|..+++||... .+.+. ..|+...... .+... ..... +.
T Consensus 215 tG~~-~~~~~~ipG~~~------------------~gv~~a~~~l~~~~~~--------------~~~~~-~~~~~~g~~ 260 (456)
T 2vdc_G 215 TGVY-KARDIKAPGSGL------------------GNIVAALDYLTTSNKV--------------SLGDT-VEAYENGSL 260 (456)
T ss_dssp CCCC-EECCTTCSCCTT------------------TTEEEHHHHHHHHHHH--------------HCTTT-CSSCCTTCS
T ss_pred cCCC-CCCCCCCCCCcC------------------CCcEEHHHHHHHhhhh--------------hcccc-ccccccccc
Confidence 9942 366677776321 11111 1111100000 00000 00000 11
Q ss_pred cccccceeEeeceeeeecCCCCCCCCcccchhhhccccc-EEEEccccCCc-ccccC---------CCCeEEcCCceEEc
Q psy12350 245 EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-TVFLSHHSEHV-KKLRF---------PNNVVKKPDIAELT 313 (1129)
Q Consensus 245 ~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-~V~lv~r~~~~-~~~~~---------~~~i~~~~~v~~~~ 313 (1129)
...++++ +| ||||++|+|+|..+.+.|. +|++++|++.. ++... .-++.....++++.
T Consensus 261 ~~~gk~V-------vV----IGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~~~Gv~~~~~~~~~~i~ 329 (456)
T 2vdc_G 261 NAAGKHV-------VV----LGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAEEEGVEFIWQAAPEGFT 329 (456)
T ss_dssp CCCCSEE-------EE----ECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHHHTTCEEECCSSSCCEE
T ss_pred ccCCCEE-------EE----ECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHHHCCCEEEeCCCceEEe
Confidence 1123344 44 8999999999999888875 79999998765 22110 11334455566664
Q ss_pred CCc----eEEc------------------CC--CEeecCEEEEcccccccCC--CCCCCCCeEeecCcccccccccccCC
Q psy12350 314 PTG----VRFQ------------------DG--SYEQVDIILYCTGYTYRYP--FLHESCGIKVVNKNVQPLYKHLINIE 367 (1129)
Q Consensus 314 ~~~----v~~~------------------dg--~~~~~D~VI~atG~~~~~~--~l~~~~~~~~~~~~~~~l~~~~~~~~ 367 (1129)
+++ |.+. +| .++++|.||+|+|++++.. ++. ..++.++++..+....+.+.++
T Consensus 330 ~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~-~~gl~~~~~G~i~vd~~~~~Ts 408 (456)
T 2vdc_G 330 GDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFD-EPELKVTRWGTLLVDHRTKMTN 408 (456)
T ss_dssp EEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHH-STTSCBCTTSSBCCCTTTCBCS
T ss_pred CCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcc-cCCeeECCCCCEEECCCCCcCC
Confidence 332 3332 23 3579999999999998754 665 4556666555444444334468
Q ss_pred CCCeEEecccccccc--cccccceeeehhhcccccccc
Q psy12350 368 HPSMCIIGYTYRYPF--LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 368 ~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.|++|++|.....|. ..+..|++.+|.++.+.+.+.
T Consensus 409 ~~~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~~~L~~~ 446 (456)
T 2vdc_G 409 MDGVFAAGDIVRGASLVVWAIRDGRDAAEGIHAYAKAK 446 (456)
T ss_dssp STTEEECGGGGSSCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEeccccCCchHHHHHHHHHHHHHHHHHHHhhcC
Confidence 899999999854332 334488888888888776553
No 92
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=99.81 E-value=1.7e-20 Score=223.77 Aligned_cols=295 Identities=11% Similarity=0.143 Sum_probs=173.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccC-----cccccccccCCcccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHS-----SMYKSLKTNLPKEIM 82 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~-----~~y~~l~~~~~~~~~ 82 (1129)
..+||+||||||||++||..|++ .|++|+|+|+++.+||+|.+ .+|. |.+. ..|+.+.....
T Consensus 4 ~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~---~g~~----psk~l~~~~~~~~~~~~~~~---- 70 (478)
T 1v59_A 4 KSHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKLGGTCLN---VGCI----PSKALLNNSHLFHQMHTEAQ---- 70 (478)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHH---HSHH----HHHHHHHHHHHHHHHHHTSG----
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCcCCccce---eccH----HHHHHHHHHHHHHHHHHHHH----
Confidence 35799999999999999999999 56899999999999999974 2221 1000 01111110010
Q ss_pred ccCCCCCCCCCCCCCCCHHHHHHH-----------HHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 83 ELSGYHHKGHPDKSYIAANDVLEY-----------LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 83 ~~~d~~~~~~~~~~~~~~~~~~~y-----------l~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
.+.++.. .....+..++..+ +...+++.++ .+++++.+.. +...+.+.. .++..
T Consensus 71 ---~~gi~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv--~~~~g~~~~~--------~~~~v~V~~-~~G~~ 135 (478)
T 1v59_A 71 ---KRGIDVN-GDIKINVANFQKAKDDAVKQLTGGIELLFKKNKV--TYYKGNGSFE--------DETKIRVTP-VDGLE 135 (478)
T ss_dssp ---GGTEEEC-SCEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--EEEESEEEES--------SSSEEEEEC-CTTCT
T ss_pred ---hcCcccC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCC--EEEEEEEEEc--------cCCeEEEEe-cCCCc
Confidence 0000000 0001123333333 3344455555 6777776641 223344432 12212
Q ss_pred ce------EEecceeeeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCC
Q psy12350 152 GF------YLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVP 225 (1129)
Q Consensus 152 ~~------~~~d~~~~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 225 (1129)
.. ..|| +||+||| +.|. .+||.. +.+ . ...
T Consensus 136 ~~~~~~~~i~~d-----~lViAtG--s~p~--~~~g~~---~~~----------~---~v~------------------- 171 (478)
T 1v59_A 136 GTVKEDHILDVK-----NIIVATG--SEVT--PFPGIE---IDE----------E---KIV------------------- 171 (478)
T ss_dssp TCCSSCEEEEEE-----EEEECCC--EEEC--CCTTCC---CCS----------S---SEE-------------------
T ss_pred ccccccceEEeC-----EEEECcC--CCCC--CCCCCC---CCC----------c---eEE-------------------
Confidence 34 7899 9999999 4442 233310 000 0 000
Q ss_pred ccchhcccccccccccccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCC----
Q psy12350 226 PVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN---- 301 (1129)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~---- 301 (1129)
...+.+. . ++ .+++++| ||||++|+|+|..|++.|.+||+++|.+.+++...++
T Consensus 172 ------------~~~~~~~-~--~~---~~~~vvV----iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~ 229 (478)
T 1v59_A 172 ------------SSTGALS-L--KE---IPKRLTI----IGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKA 229 (478)
T ss_dssp ------------CHHHHTT-C--SS---CCSEEEE----ECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHH
T ss_pred ------------cHHHHHh-h--hc---cCceEEE----ECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHH
Confidence 0000000 0 00 1233344 8999999999999999999999999998876632211
Q ss_pred ----------CeEEcCCceEEcC--C----ceEEc-----CCCEeecCEEEEcccccccCC--CCCCCCCeEeecCcccc
Q psy12350 302 ----------NVVKKPDIAELTP--T----GVRFQ-----DGSYEQVDIILYCTGYTYRYP--FLHESCGIKVVNKNVQP 358 (1129)
Q Consensus 302 ----------~i~~~~~v~~~~~--~----~v~~~-----dg~~~~~D~VI~atG~~~~~~--~l~~~~~~~~~~~~~~~ 358 (1129)
++..+..|+++++ + .|.++ +++++++|.||+|+|++++.+ +++ ..++.++++..+.
T Consensus 230 l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~-~~g~~~~~~G~i~ 308 (478)
T 1v59_A 230 TQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAE-KIGLEVDKRGRLV 308 (478)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTT-TTTCCBCTTSCBC
T ss_pred HHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCch-hcCceeCCCCCEe
Confidence 3455667888864 2 25565 356789999999999999988 555 4567766554333
Q ss_pred cccccccCCCCCeEEecccccccc--cccccceeeehhhccc
Q psy12350 359 LYKHLINIEHPSMCIIGYTYRYPF--LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 359 l~~~~~~~~~p~l~~~G~~~~~~~--~~~~~~~~~~a~~~~~ 398 (1129)
...++ .+++|++|++|.....|. .....||+.+|.++.+
T Consensus 309 vd~~~-~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 349 (478)
T 1v59_A 309 IDDQF-NSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKT 349 (478)
T ss_dssp CCTTS-BCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ECcCC-ccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcC
Confidence 33332 267899999998854321 1223777777777654
No 93
>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*
Probab=99.81 E-value=5.4e-21 Score=224.15 Aligned_cols=280 Identities=14% Similarity=0.172 Sum_probs=171.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc-cCCCCCCCC----CCCCcc-ccccCccccc--cccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL-YTEHIGCDQ----YGLPVH-SSMYKSLKTN--LPKDLM 812 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~-~~~~~g~~~----~g~p~~-~~~y~~~~~~--~~~~~~ 812 (1129)
.++|||+|++|+.+|.+|++.|++.+|+|+|+++..++... .....+... ..+... ...+...... ...+..
T Consensus 2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~V~ 81 (437)
T 4eqs_A 2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDRRYALAYTPEKFYDRKQITVKTYHEVI 81 (437)
T ss_dssp CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCGGGTBCCCHHHHHHHHCCEEEETEEEE
T ss_pred eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccchhhhhhcCHHHHHHhcCCEEEeCCeEE
Confidence 36899999999999999999997788999999876543210 000000000 000000 0000000000 000000
Q ss_pred cccCC----CCC--C-CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccC-CCC-CCCCCCeEEEEcCCccHHH
Q psy12350 813 ELCGY----GHK--G-NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDY-RTP-EPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 813 ~~~~~----~~~--~-~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~-~~~-~~~~gk~VvVVG~G~Sg~e 883 (1129)
..... ... . .....+....-++.+|+.|++|++||...|..+.+..... +.. ....+++|+|||+|.+|+|
T Consensus 82 ~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvViGgG~ig~E 161 (437)
T 4eqs_A 82 AINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLE 161 (437)
T ss_dssp EEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEECCSHHHHH
T ss_pred EEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEECCccchhh
Confidence 00000 000 0 0000011123345599999999999865433221111100 000 1124789999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCCCCCeEEc--CCeeEEeCCcEEecCCcEeec
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLK--PDVAELTPTGVRFQDGSYEQV 960 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~i~~v~~~~V~~~dG~~~~~ 960 (1129)
+|..+++.|.+||++++....++.. +.......+.+.. .+|+++ ..|++++++.+.+++|+++++
T Consensus 162 ~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~------------~gV~i~~~~~v~~~~~~~v~~~~g~~~~~ 229 (437)
T 4eqs_A 162 VLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDK------------REIPYRLNEEINAINGNEITFKSGKVEHY 229 (437)
T ss_dssp HHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHH------------TTCCEEESCCEEEEETTEEEETTSCEEEC
T ss_pred hHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhc------------cceEEEeccEEEEecCCeeeecCCeEEee
Confidence 9999999999999999877665432 2222211111111 144444 449999999999999999999
Q ss_pred cEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHHHHHHHHHHHHH
Q psy12350 961 DIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 961 D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~~e~qa~~~a~~ 1029 (1129)
|.||+|+|++|+..+++. .|+++++++...+..+ +.++.||||++||+... ...+.+..||+.+|++
T Consensus 230 D~vl~a~G~~Pn~~~~~~-~gl~~~~~G~I~vd~~-~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~g~~~a~n 307 (437)
T 4eqs_A 230 DMIIEGVGTHPNSKFIES-SNIKLDRKGFIPVNDK-FETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRAASIVAEQ 307 (437)
T ss_dssp SEEEECCCEEESCGGGTT-SSCCCCTTSCEECCTT-CBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHHHHHHHHH
T ss_pred eeEEEEeceecCcHHHHh-hhhhhccCCcEecCCC-ccCCCCCEEEEEEccCcccccCCccccchhHHHHHHHHHHHHHH
Confidence 999999999999887764 6788877654444333 34689999999998642 2467899999999999
Q ss_pred HcCCC
Q psy12350 1030 MQGHI 1034 (1129)
Q Consensus 1030 l~g~~ 1034 (1129)
+.|..
T Consensus 308 i~g~~ 312 (437)
T 4eqs_A 308 IAGND 312 (437)
T ss_dssp HHSCT
T ss_pred HcCCC
Confidence 99864
No 94
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=99.81 E-value=1.5e-20 Score=212.42 Aligned_cols=267 Identities=13% Similarity=0.086 Sum_probs=177.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC----CCCCCCCCCccccccCcccc-----ccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH----IGCDQYGLPVHSSMYKSLKT-----NLP-- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~----~g~~~~g~p~~~~~y~~~~~-----~~~-- 808 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||++ +||.|.+... ++... +. ...+...+.. +..
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~--~gg~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~v~~~ 88 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSARYM--LKTLVIGET--PGGQLTEAGIVDDYLGLIE--IQ-ASDMIKVFNKHIEKYEVPVL 88 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS--TTGGGGGCCEECCSTTSTT--EE-HHHHHHHHHHHHHTTTCCEE
T ss_pred cCEEEECccHHHHHHHHHHHHCC--CcEEEEecc--CCCeecccccccccCCCCC--CC-HHHHHHHHHHHHHHcCCEEE
Confidence 47899999999999999999999 999999997 9999985321 11100 00 0000000000 000
Q ss_pred -ccccccc----CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 809 -KDLMELC----GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 809 -~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
....... .+.........+.....++.+|+.|+.|++||.+.|.+..+|...+.+...+.+++|+|||+|.+|+|
T Consensus 89 ~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~vvG~G~~~~e 168 (323)
T 3f8d_A 89 LDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAPLFKNRVVAVIGGGDSALE 168 (323)
T ss_dssp ESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSHHHHH
T ss_pred EEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHhHcCCCEEEEECCCHHHHH
Confidence 0000000 00000000011222233444999999999999998888878777666666678999999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEecC---
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQD--- 954 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~d--- 954 (1129)
+|..|++.+.+|+++.+.+..... +.+. ..+. ...+|++..+ +.+++.+ +|++.|
T Consensus 169 ~a~~l~~~g~~v~~~~~~~~~~~~-~~~~-------------~~~~--~~~gv~~~~~~~v~~i~~~~~~~~v~~~~~~~ 232 (323)
T 3f8d_A 169 GAEILSSYSTKVYLIHRRDTFKAQ-PIYV-------------ETVK--KKPNVEFVLNSVVKEIKGDKVVKQVVVENLKT 232 (323)
T ss_dssp HHHHHHHHSSEEEEECSSSSCCSC-HHHH-------------HHHH--TCTTEEEECSEEEEEEEESSSEEEEEEEETTT
T ss_pred HHHHHHHhCCeEEEEEeCCCCCcC-HHHH-------------HHHH--hCCCcEEEeCCEEEEEeccCceeEEEEEECCC
Confidence 999999999999999886654331 1100 0000 0126777765 7888665 377776
Q ss_pred Cc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc----chhHHHHHHHHHHHH
Q psy12350 955 GS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT----LLFNLFDLQVRLFQQ 1028 (1129)
Q Consensus 955 G~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa~~~a~ 1028 (1129)
|+ ++++|.||+|+|++|+.+++.. +|+.+++++...+.. .+.++.||||++|++... .....+..||+.+|.
T Consensus 233 g~~~~~~~D~vv~a~G~~p~~~~~~~-~g~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~ 310 (323)
T 3f8d_A 233 GEIKELNVNGVFIEIGFDPPTDFAKS-NGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAAT 310 (323)
T ss_dssp CCEEEEECSEEEECCCEECCHHHHHH-TTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHH
T ss_pred CceEEEEcCEEEEEECCCCChhHHhh-cCeeecCCCcEecCC-CceecCCCEEEcceecCCCCcccceeehhhHHHHHHH
Confidence 87 6899999999999999887764 667766655443333 344689999999999763 456788888888887
Q ss_pred HHc
Q psy12350 1029 LMQ 1031 (1129)
Q Consensus 1029 ~l~ 1031 (1129)
.+.
T Consensus 311 ~i~ 313 (323)
T 3f8d_A 311 SAY 313 (323)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
No 95
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=99.80 E-value=7.4e-20 Score=206.89 Aligned_cols=270 Identities=15% Similarity=0.162 Sum_probs=173.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccccc---cccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKTNL---PKDL 811 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~~~---~~~~ 811 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|++ .+||.|.... +++... +++ ...+...+.... ...+
T Consensus 8 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~gv~~ 82 (325)
T 2q7v_A 8 DYDVVIIGGGPAGLTAAIYTGRAQ--LSTLILEKG-MPGGQIAWSEEVENFPGFPE-PIA-GMELAQRMHQQAEKFGAKV 82 (325)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTGGGGGCSCBCCSTTCSS-CBC-HHHHHHHHHHHHHHTTCEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHcC--CcEEEEeCC-CCCcccccccccccCCCCCC-CCC-HHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999 999999998 7999997532 222100 000 000000000000 0000
Q ss_pred c--cccCCCCC--CC--------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCc
Q psy12350 812 M--ELCGYGHK--GN--------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 812 ~--~~~~~~~~--~~--------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~ 879 (1129)
. ........ .. ....+.....++.+|+.|+.|++||.+.|.+..+|+..+.+...+.+|+|+|||+|.
T Consensus 83 ~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~ 162 (325)
T 2q7v_A 83 EMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGFFYKGKKVVVIGGGD 162 (325)
T ss_dssp EECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGTTCEEEEECCSH
T ss_pred EeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHHHcCCCEEEEECCCH
Confidence 0 00000000 00 000111122233389999999999998887777776655444456789999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEec
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQ 953 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~ 953 (1129)
+|+|+|..|++.+.+|+++.+.+.... .+.+.. .+. ...+|++..+ +.++.++ +|++.
T Consensus 163 ~g~e~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~-------------~l~--~~~gv~i~~~~~v~~i~~~~~v~~v~~~ 226 (325)
T 2q7v_A 163 AAVEEGMFLTKFADEVTVIHRRDTLRA-NKVAQA-------------RAF--ANPKMKFIWDTAVEEIQGADSVSGVKLR 226 (325)
T ss_dssp HHHHHHHHHTTTCSEEEEECSSSSCCS-CHHHHH-------------HHH--TCTTEEEECSEEEEEEEESSSEEEEEEE
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCcCCc-chHHHH-------------HHH--hcCCceEecCCceEEEccCCcEEEEEEE
Confidence 999999999999999999988654321 111100 000 0126777655 7777654 47775
Q ss_pred ---CCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHH
Q psy12350 954 ---DGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLF 1026 (1129)
Q Consensus 954 ---dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~ 1026 (1129)
+|+ ++++|.||+|||++|+.+++.. + +.+++++...+... +.++.||||++|++... .....+..||+.+
T Consensus 227 ~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~-~~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~a 303 (325)
T 2q7v_A 227 NLKTGEVSELATDGVFIFIGHVPNTAFVKD-T-VSLRDDGYVDVRDE-IYTNIPMLFAAGDVSDYIYRQLATSVGAGTRA 303 (325)
T ss_dssp ETTTCCEEEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCBTT-TBCSSTTEEECSTTTCSSCCCHHHHHHHHHHH
T ss_pred ECCCCcEEEEEcCEEEEccCCCCChHHHhh-h-cccCCCccEecCCC-CccCCCCEEEeecccCccHHHHHHHHHHHHHH
Confidence 676 6899999999999999888875 3 55554443333333 45689999999999764 4568888999988
Q ss_pred HHHHcC
Q psy12350 1027 QQLMQG 1032 (1129)
Q Consensus 1027 a~~l~g 1032 (1129)
|..+..
T Consensus 304 a~~i~~ 309 (325)
T 2q7v_A 304 AMMTER 309 (325)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887753
No 96
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.80 E-value=7.6e-20 Score=218.63 Aligned_cols=268 Identities=21% Similarity=0.284 Sum_probs=174.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcc-ccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVH-SSM 799 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~-~~~ 799 (1129)
-+++|||+|++|+++|+.|++.| .+|+|||++ .+||+|.+. ||-+ +|++.. ...
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~c~~~---gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 76 (500)
T 1onf_A 3 YDLIVIGGGSGGMAAARRAARHN--AKVALVEKS-RLGGTCVNV---GCVPKKIMFNAASVHDILENSRHYGFDTKFSFN 76 (500)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-STTHHHHHT---SHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred cCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCC-CcCcccccc---CCcchHHHHHHHHHHHHHHhhHhcCCccCCccC
Confidence 47899999999999999999999 999999997 599999742 2210 111100 000
Q ss_pred cCcccc-------c----c----cc-ccccccCCC--CCCC-----C-------------CCCCCChhhhhhccCCCCCC
Q psy12350 800 YKSLKT-------N----L----PK-DLMELCGYG--HKGN-----A-------------DKSYIGAKDVLENYNHPIYP 843 (1129)
Q Consensus 800 y~~~~~-------~----~----~~-~~~~~~~~~--~~~~-----~-------------~~~~~~~~~v~~~~~~P~~P 843 (1129)
++.+.. . . .+ ...-+.... .... . ...+.....++.+|+.|.+|
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~~p 156 (500)
T 1onf_A 77 LPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFP 156 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCCCCC
Confidence 000000 0 0 00 000000000 0000 0 01112222334499999999
Q ss_pred CCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEec
Q psy12350 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSH 922 (1129)
Q Consensus 844 ~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~ 922 (1129)
++||.+ .++|+.++..... +|+|+|||+|.+|+|+|..|++.|.+||++++.+..++. .+.+.....+.+
T Consensus 157 ~i~G~~----~~~~~~~~~~~~~--~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l--- 227 (500)
T 1onf_A 157 PVKGIE----NTISSDEFFNIKE--SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLENDM--- 227 (500)
T ss_dssp SCTTGG----GCEEHHHHTTCCC--CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHHH---
T ss_pred CCCCCC----cccCHHHHhccCC--CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHHH---
Confidence 999974 3678777766554 899999999999999999999999999999987765542 222222211111
Q ss_pred CCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCCcE-eeccEEEEccCccCcCCCC-CCCCCeeecCCcccccc
Q psy12350 923 HSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDGSY-EQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 923 ~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG~~-~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly 993 (1129)
. ..+|+++.+ |.+++++ .|++.||++ +++|.||+|+|++|+.++| -+.+|+++ +++...+.
T Consensus 228 ------~---~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd 297 (500)
T 1onf_A 228 ------K---KNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVD 297 (500)
T ss_dssp ------H---HTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEEC
T ss_pred ------H---hCCCEEEECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEEC
Confidence 1 125666654 7888642 377889988 9999999999999998765 35578877 44433333
Q ss_pred cceeecCCCCcEEEcccc----------------------------------cc-chhHHHHHHHHHHHHHHcCC
Q psy12350 994 KHTINIEHPTMFILGVPR----------------------------------HT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~----------------------------------~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.+ +.++.||||++|++. .. ...+.+..||+.+|+.+.|.
T Consensus 298 ~~-~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g~ 371 (500)
T 1onf_A 298 EN-QRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFLK 371 (500)
T ss_dssp TT-CBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CC-cccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhCC
Confidence 33 346899999999987 12 34688999999999999874
No 97
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=99.80 E-value=3.6e-20 Score=208.51 Aligned_cols=268 Identities=16% Similarity=0.143 Sum_probs=176.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEE-EcccCCcCcccccCC----CCCCCCCCCCccccccCcccc-----ccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTT-FEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT-----NLP- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v-~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~-----~~~- 808 (1129)
.+++|||+|++|+++|..|.+.| ++|+| +|| +.+||.|.... +++..+ .++ ...+...+.. +..
T Consensus 5 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~v~~ 79 (315)
T 3r9u_A 5 LDVAIIGGGPAGLSAGLYATRGG--LKNVVMFEK-GMPGGQITSSSEIENYPGVAQ-VMD-GISFMAPWSEQCMRFGLKH 79 (315)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHT--CSCEEEECS-SSTTGGGGGCSCBCCSTTCCS-CBC-HHHHHHHHHHHHTTTCCEE
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CCeEEEEeC-CCCCceeeeeceeccCCCCCC-CCC-HHHHHHHHHHHHHHcCcEE
Confidence 46899999999999999999999 99999 999 78999987542 222110 000 0000000000 000
Q ss_pred --cccccc-cC----CC--CCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCc
Q psy12350 809 --KDLMEL-CG----YG--HKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQ 879 (1129)
Q Consensus 809 --~~~~~~-~~----~~--~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~ 879 (1129)
...... .+ +. ...+ . .+.....++.+|+.|+.|++||.+.|.+..+|+..+.+...+.+|+|+|||+|.
T Consensus 80 ~~~~v~~i~~~~~~~~~v~~~~~-~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~g~ 157 (315)
T 3r9u_A 80 EMVGVEQILKNSDGSFTIKLEGG-K-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGD 157 (315)
T ss_dssp ECCCEEEEEECTTSCEEEEETTS-C-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGTTSEEEEECCBH
T ss_pred EEEEEEEEecCCCCcEEEEEecC-C-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeecccccccCcCEEEEECCCH
Confidence 000000 00 00 0000 0 111222334489999999999999888888888777666667899999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-----EEe
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-----VRF 952 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-----V~~ 952 (1129)
+|+|+|..|++.+.+|+++.+.+.... .+.+... .+. ..+|++..+ +.+++.++ |++
T Consensus 158 ~~~e~a~~l~~~g~~v~~~~~~~~~~~-~~~~~~~------------~~~---~~gv~~~~~~~v~~i~~~~~~~~~v~~ 221 (315)
T 3r9u_A 158 TALEEALYLANICSKIYLIHRRDEFRA-APSTVEK------------VKK---NEKIELITSASVDEVYGDKMGVAGVKV 221 (315)
T ss_dssp HHHHHHHHHHTTSSEEEEECSSSSCBS-CHHHHHH------------HHH---CTTEEEECSCEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhhCCEEEEEEeCCCCCC-CHHHHHH------------HHh---cCCeEEEeCcEEEEEEcCCCcEEEEEE
Confidence 999999999999999999988654321 1111000 000 236777654 77776543 666
Q ss_pred c--CCc--EeeccEEEEccCccCcCCCCCC--CCC-eeecCCcccccccceeecCCCCcEEEccccc--cchhHHHHHHH
Q psy12350 953 Q--DGS--YEQVDIILCCTGYSNHYPFLHE--SCG-IKVVNKNVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQV 1023 (1129)
Q Consensus 953 ~--dG~--~~~~D~VI~aTG~~~~~~fl~~--~~g-~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa 1023 (1129)
. +|+ ++++|.||+|+|++|+.+++.. .+| +.+++++...+.. .+.++.||||++|++.. ......+..||
T Consensus 222 ~~~~g~~~~~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~-~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g 300 (315)
T 3r9u_A 222 KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVICAAGDG 300 (315)
T ss_dssp ECTTSCEEEECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT-TCBCSSTTEEECGGGBTTCCCCHHHHHHHH
T ss_pred EcCCCCeEEeecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCC-CcccCCCCEEEeecccCCchhhhhhHHhhH
Confidence 6 886 6899999999999999887764 244 7776655443433 34568999999999863 34567888888
Q ss_pred HHHHHHHc
Q psy12350 1024 RLFQQLMQ 1031 (1129)
Q Consensus 1024 ~~~a~~l~ 1031 (1129)
+.+|..+.
T Consensus 301 ~~aa~~i~ 308 (315)
T 3r9u_A 301 AVAALSAM 308 (315)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887663
No 98
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=99.80 E-value=2.3e-20 Score=223.12 Aligned_cols=278 Identities=17% Similarity=0.246 Sum_probs=173.7
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCcc
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPVH 796 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~~ 796 (1129)
|+..+++|||+|++|+++|..|.+.| .+|+|||+++.+||+|.+. ||-+ +|++..
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~~G--~~V~liEk~~~~GG~~~~~---gciP~k~l~~~~~~~~~~~~~~~~~g~~~~ 97 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQLG--MKVAVVEKRSTYGGTCLNV---GCIPSKALLHASEMFHQAQHGLEALGVEVA 97 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHHSSGGGTEECC
T ss_pred cccCCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCccccc---cchhhHHHHHHHHHHHHHHhhHhhcCcccC
Confidence 34568999999999999999999999 9999999999999999742 3210 011000
Q ss_pred ccc--cCcccccc---------------cc-cc------ccccC---CCCCCCCC--CCCCChhhhhhccCCCCCCCCCC
Q psy12350 797 SSM--YKSLKTNL---------------PK-DL------MELCG---YGHKGNAD--KSYIGAKDVLENYNHPIYPEFKG 847 (1129)
Q Consensus 797 ~~~--y~~~~~~~---------------~~-~~------~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~P~~P~i~G 847 (1129)
... |..+.... .+ .. ..+.+ +....... ..+.....++.+|+.| |.+||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p--~~ipg 175 (491)
T 3urh_A 98 NPKLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDV--AGIPG 175 (491)
T ss_dssp CCEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEEC--CCBTT
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCC--CCCCC
Confidence 000 00000000 00 00 00000 00000000 0122223344488886 56788
Q ss_pred CCC-CCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCc
Q psy12350 848 KDM-CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSE 925 (1129)
Q Consensus 848 ~~~-f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 925 (1129)
++. +.+..+++.+........+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+.+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l------ 249 (491)
T 3urh_A 176 VEVAFDEKTIVSSTGALALEKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRML------ 249 (491)
T ss_dssp BCCCCCSSSEECHHHHTSCSSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHH------
T ss_pred cccccCCeeEEehhHhhhhhhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHH------
Confidence 763 455555554443333446899999999999999999999999999999987765532 222222111111
Q ss_pred cccccCCCCCeEEcCC--eeEEeCC--c--EEecC---C--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccc
Q psy12350 926 RVTSLCLPNNVVLKPD--VAELTPT--G--VRFQD---G--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 926 ~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~d---G--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly 993 (1129)
. ..+|++..+ +.+++.+ + +.+.+ | +++++|.||+|||++|+.++|. +..|+.+++++...+.
T Consensus 250 ---~---~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd 323 (491)
T 3urh_A 250 ---T---KQGIDFKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEID 323 (491)
T ss_dssp ---H---HTTCEEECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCC
T ss_pred ---H---hCCCEEEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeEC
Confidence 0 125666654 7777542 2 55553 5 5689999999999999988763 3357777765544444
Q ss_pred cceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 994 KHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.. +.++.||||++|++... ...+.+..||+.+|+.+.|..
T Consensus 324 ~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 364 (491)
T 3urh_A 324 RH-FQTSIAGVYAIGDVVRGPMLAHKAEDEGVAVAEIIAGQA 364 (491)
T ss_dssp TT-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CC-CCCCCCCEEEEEecCCCccchhHHHHHHHHHHHHHcCCC
Confidence 33 44689999999998854 456899999999999998853
No 99
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=99.80 E-value=1.8e-19 Score=202.35 Aligned_cols=268 Identities=12% Similarity=0.075 Sum_probs=171.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccc---ccccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT---NLPKDLM 812 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~---~~~~~~~ 812 (1129)
+++|||+|++|+++|..|.+.| . +|+|+|++ .+||.|.... +++... .++ ...+...+.. .....+.
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--~~~v~lie~~-~~gg~~~~~~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~v~~~ 77 (311)
T 2q0l_A 3 DCAIIGGGPAGLSAGLYATRGG--VKNAVLFEKG-MPGGQITGSSEIENYPGVKE-VVS-GLDFMQPWQEQCFRFGLKHE 77 (311)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CSSEEEECSS-STTCGGGGCSCBCCSTTCCS-CBC-HHHHHHHHHHHHHTTSCEEE
T ss_pred eEEEECccHHHHHHHHHHHHCC--CCcEEEEcCC-CCCcccccccccccCCCCcc-cCC-HHHHHHHHHHHHHHcCCEEE
Confidence 5789999999999999999999 8 99999994 7899987431 222100 000 0000000000 0000000
Q ss_pred --cccCCCCCCC-------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 813 --ELCGYGHKGN-------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 813 --~~~~~~~~~~-------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
.......... ....+.....++.+|+.|+.|++||.+.|.+..+|+..+.+.....+|+|+|||+|.+|+|
T Consensus 78 ~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~e 157 (311)
T 2q0l_A 78 MTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGFFYKNKEVAVLGGGDTAVE 157 (311)
T ss_dssp CSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGGGGTTSEEEEECCSHHHHH
T ss_pred EEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChhhcCCCEEEEECCCHHHHH
Confidence 0000000000 0011111222333999999999999877766667765554444557899999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEec---
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQ--- 953 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~--- 953 (1129)
+|..|++.+.+|+++.+.+... ..+.+.. .+. ...+|++..+ +.++..+ +|++.
T Consensus 158 ~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~~-------------~l~--~~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~~ 221 (311)
T 2q0l_A 158 EAIYLANICKKVYLIHRRDGFR-CAPITLE-------------HAK--NNDKIEFLTPYVVEEIKGDASGVSSLSIKNTA 221 (311)
T ss_dssp HHHHHHTTSSEEEEECSSSSCC-SCHHHHH-------------HHH--TCTTEEEETTEEEEEEEEETTEEEEEEEEETT
T ss_pred HHHHHHhcCCEEEEEeeCCccC-CCHHHHH-------------HHh--hCCCeEEEeCCEEEEEECCCCcEeEEEEEecC
Confidence 9999999999999998865431 1111110 010 0136777665 7777643 46776
Q ss_pred CCc--EeeccEEEEccCccCcCCCCCCCC----CeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHH
Q psy12350 954 DGS--YEQVDIILCCTGYSNHYPFLHESC----GIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRL 1025 (1129)
Q Consensus 954 dG~--~~~~D~VI~aTG~~~~~~fl~~~~----g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~ 1025 (1129)
+|+ ++++|.||+|+|++|+.+++.. . ++.+++++...+..+ +.++.||||++|++... .....+..||+.
T Consensus 222 ~g~~~~i~~D~vi~a~G~~p~~~~l~~-~g~~~~l~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~ 299 (311)
T 2q0l_A 222 TNEKRELVVPGFFIFVGYDVNNAVLKQ-EDNSMLCKCDEYGSIVVDFS-MKTNVQGLFAAGDIRIFAPKQVVCAASDGAT 299 (311)
T ss_dssp TCCEEEEECSEEEECSCEEECCGGGBC-TTSCBSSCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHH
T ss_pred CCceEEEecCEEEEEecCccChhhhhc-ccccceeEeccCCCEEeCCc-cccCCCCeEEcccccCcchHHHHHHHHhHHH
Confidence 676 6799999999999999888865 3 366665444334333 45689999999999764 456888899999
Q ss_pred HHHHHc
Q psy12350 1026 FQQLMQ 1031 (1129)
Q Consensus 1026 ~a~~l~ 1031 (1129)
+|..+.
T Consensus 300 aa~~i~ 305 (311)
T 2q0l_A 300 AALSVI 305 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888764
No 100
>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}
Probab=99.80 E-value=5.3e-21 Score=227.47 Aligned_cols=184 Identities=17% Similarity=0.138 Sum_probs=131.4
Q ss_pred hccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhcc
Q psy12350 835 ENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATR 914 (1129)
Q Consensus 835 ~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~ 914 (1129)
.+|++|.+|+.++.+. ..+++|.+..+..++ .|+++|||||.+|+|+|..+++.|.+||++.+...+..+++++...
T Consensus 192 ATGs~P~~P~~~~~~~--~~~~ts~~~l~l~~l-P~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~ 268 (542)
T 4b1b_A 192 ATGCRPHIPDDVEGAK--ELSITSDDIFSLKKD-PGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVK 268 (542)
T ss_dssp CCCEEECCCSSSBTHH--HHCBCHHHHTTCSSC-CCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHH
T ss_pred ccCCCCCCCCcccCCC--ccccCchhhhccccC-CceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHH
Confidence 3999999997554432 235666666665555 6899999999999999999999999999998754433344433332
Q ss_pred ccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC--c--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCC
Q psy12350 915 ASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT--G--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNK 987 (1129)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~ 987 (1129)
..+.+.. .+|+++.+ +++++.. . |.+.+++++++|.|++|+|++||+..|. +..|+.+++.
T Consensus 269 l~~~l~~------------~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~ 336 (542)
T 4b1b_A 269 VKLYMEE------------QGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKS 336 (542)
T ss_dssp HHHHHHH------------TTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETT
T ss_pred HHHHHHh------------hcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccccCcccceeeeccc
Confidence 2222111 14555443 6666432 2 6678899999999999999999998776 3467777765
Q ss_pred cccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHHHcCC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
......+..+.++.||||++||+... ...+.+..|++.++..+.|.
T Consensus 337 ~~~i~vd~~~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g~ 384 (542)
T 4b1b_A 337 NNKIIADHLSCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFKD 384 (542)
T ss_dssp TTEECCCTTSBCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CceEeccccccccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhcC
Confidence 44323334445699999999999754 35589999999999998874
No 101
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=99.80 E-value=2.9e-20 Score=211.20 Aligned_cols=272 Identities=14% Similarity=0.139 Sum_probs=171.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcc-----ccccCcccccc-------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVH-----SSMYKSLKTNL------- 807 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~-----~~~y~~~~~~~------- 807 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+++.+||.|... ++....+..+.. ..+...+....
T Consensus 6 ~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (335)
T 2zbw_A 6 TDVLIVGAGPTGLFAGFYVGMRG--LSFRFVDPLPEPGGQLTAL-YPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVY 82 (335)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSCHHHHHT-CTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEE
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeeecc-CCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 46899999999999999999999 9999999999999999632 222111111100 00000000000
Q ss_pred --cccccccc--C--CCCCCCCCCCCCChhhhhhccC---CCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCC
Q psy12350 808 --PKDLMELC--G--YGHKGNADKSYIGAKDVLENYN---HPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSG 878 (1129)
Q Consensus 808 --~~~~~~~~--~--~~~~~~~~~~~~~~~~v~~~~~---~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G 878 (1129)
......+. + +.........+.....++.+|+ .|+.|+++|.+.|.+.-+|.. +++..++.+|+|+|||+|
T Consensus 83 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~-~~~~~~~~~~~v~viG~G 161 (335)
T 2zbw_A 83 SLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA-VKSKAEFQGKRVLIVGGG 161 (335)
T ss_dssp EESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESS-CSCGGGGTTCEEEEECSS
T ss_pred EeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEe-cCchhhcCCCEEEEECCC
Confidence 00000000 0 0000000001111223334777 688889999887776545433 445556679999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEe
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRF 952 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~ 952 (1129)
.+|+|+|..|++.+.+|+++.+.+...... ....... +.+. ..+|+++.+ |.+++++ +|.+
T Consensus 162 ~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~-~~~~~l~---------~~l~---~~gv~v~~~~~v~~i~~~~~~~~v~~ 228 (335)
T 2zbw_A 162 DSAVDWALNLLDTARRITLIHRRPQFRAHE-ASVKELM---------KAHE---EGRLEVLTPYELRRVEGDERVRWAVV 228 (335)
T ss_dssp HHHHHHHHHTTTTSSEEEEECSSSSCCSCH-HHHHHHH---------HHHH---TTSSEEETTEEEEEEEESSSEEEEEE
T ss_pred HHHHHHHHHHHhhCCEEEEEEcCCccCccH-HHHHHHH---------hccc---cCCeEEecCCcceeEccCCCeeEEEE
Confidence 999999999999999999999876543221 1111110 0111 126777665 7777654 4777
Q ss_pred c---CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc----chhHHHHHHH
Q psy12350 953 Q---DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT----LLFNLFDLQV 1023 (1129)
Q Consensus 953 ~---dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~~e~qa 1023 (1129)
. +| +++++|.||+|||++++.+++.. +++.+++.++ .+.. .+.++.||||++|++... .....+..||
T Consensus 229 ~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~~~~~g~i-~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g 305 (335)
T 2zbw_A 229 FHNQTQEELALEVDAVLILAGYITKLGPLAN-WGLALEKNKI-KVDT-TMATSIPGVYACGDIVTYPGKLPLIVLGFGEA 305 (335)
T ss_dssp EETTTCCEEEEECSEEEECCCEEEECGGGGG-SCCCEETTEE-ECCT-TCBCSSTTEEECSTTEECTTCCCCHHHHHHHH
T ss_pred EECCCCceEEEecCEEEEeecCCCCchHhhh-cceeccCCee-eeCC-CCCCCCCCEEEeccccccCcchhhhhhhHHHH
Confidence 6 78 56899999999999999888765 6676664332 3333 345689999999998642 3456777888
Q ss_pred HHHHHHHc
Q psy12350 1024 RLFQQLMQ 1031 (1129)
Q Consensus 1024 ~~~a~~l~ 1031 (1129)
+.+|+.+.
T Consensus 306 ~~aa~~i~ 313 (335)
T 2zbw_A 306 AIAANHAA 313 (335)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877664
No 102
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=99.79 E-value=2.7e-20 Score=216.86 Aligned_cols=276 Identities=13% Similarity=0.114 Sum_probs=170.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc---cCCCCCCCC-CCCCccccccCcccccc--ccccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL---YTEHIGCDQ-YGLPVHSSMYKSLKTNL--PKDLMEL 814 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~---~~~~~g~~~-~g~p~~~~~y~~~~~~~--~~~~~~~ 814 (1129)
+++|||+|++|+++|..|++.|...+|+++|+++..+..-. ..-..+... ..+......|....... .......
T Consensus 4 ~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i 83 (410)
T 3ef6_A 4 HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPILAEADWYGEARIDMLTGPEVTAL 83 (410)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCBSSCTTHHHHTTCEEEESCCEEEE
T ss_pred CEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHhcCCHHHHHHCCCEEEeCCEEEEE
Confidence 68999999999999999999995455999999887653100 000000000 00000000000000000 0000000
Q ss_pred c--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-----CCCCCCeEEEEcCCccHHHHHHH
Q psy12350 815 C--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-----EPFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 815 ~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-----~~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
. ...+.......+.....++.+|+.|+.|++||.+. ..+++...+.+. ....+|+|+|||+|.+|+|+|..
T Consensus 84 d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~ipG~~~--~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~E~A~~ 161 (410)
T 3ef6_A 84 DVQTRTISLDDGTTLSADAIVIATGSRARTMALPGSQL--PGVVTLRTYGDVQVLRDSWTSATRLLIVGGGLIGCEVATT 161 (410)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTTTS--TTEECCCSHHHHHHHHHHCCTTCEEEEECCSHHHHHHHHH
T ss_pred ECCCCEEEECCCCEEECCEEEEccCCcccCCCCCCccc--cceEEeccHHHHHHHHHHhccCCeEEEECCCHHHHHHHHH
Confidence 0 00000000112222334455999999999999763 345544333221 11248999999999999999999
Q ss_pred HHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC----cEEecCCcEee
Q psy12350 888 IATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQDGSYEQ 959 (1129)
Q Consensus 888 la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~dG~~~~ 959 (1129)
|++.|.+|+++++.+..++ +.+.+.....+.+. ..+|+++.+ |++++.+ +|+++||++++
T Consensus 162 l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~~~v~~~dg~~i~ 229 (410)
T 3ef6_A 162 ARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLT------------ELGVQVELGTGVVGFSGEGQLEQVMASDGRSFV 229 (410)
T ss_dssp HHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHH------------HHTCEEECSCCEEEEECSSSCCEEEETTSCEEE
T ss_pred HHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHH------------HCCCEEEeCCEEEEEeccCcEEEEEECCCCEEE
Confidence 9999999999998776553 22222222211111 115666644 8888765 48999999999
Q ss_pred ccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc----------hhHHHHHHHHHHHHH
Q psy12350 960 VDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL----------LFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 960 ~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~----------~~~~~e~qa~~~a~~ 1029 (1129)
+|.||+|||++|+.+++.. .|+..++ ++ .+..+ +.++.||||++|++.... .++.+..||+.+|+.
T Consensus 230 aD~Vv~a~G~~p~~~l~~~-~gl~~~~-gi-~vd~~-~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~qg~~aa~~ 305 (410)
T 3ef6_A 230 ADSALICVGAEPADQLARQ-AGLACDR-GV-IVDHC-GATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQAAAVAAA 305 (410)
T ss_dssp CSEEEECSCEEECCHHHHH-TTCCBSS-SE-ECCTT-SBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHHHHHHHHH
T ss_pred cCEEEEeeCCeecHHHHHh-CCCccCC-eE-EEccC-eeECCCCEEEEEcceeccCCCCCeeeechHHHHHHHHHHHHHH
Confidence 9999999999999877654 6777763 32 23222 245899999999986532 268999999999999
Q ss_pred HcCCC
Q psy12350 1030 MQGHI 1034 (1129)
Q Consensus 1030 l~g~~ 1034 (1129)
+.|+.
T Consensus 306 i~g~~ 310 (410)
T 3ef6_A 306 ILGKN 310 (410)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 99864
No 103
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=99.79 E-value=6.5e-20 Score=218.52 Aligned_cols=272 Identities=19% Similarity=0.239 Sum_probs=174.7
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCcccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPVHSS 798 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~~~~ 798 (1129)
...+++|||+|++|+++|..|.+.| .+|+|+|++ .+||+|... ||. .+|++....
T Consensus 19 ~~~dVvIIGgG~aGl~aA~~la~~G--~~V~liE~~-~~GG~~~~~---gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~ 92 (478)
T 3dk9_A 19 ASYDYLVIGGGSGGLASARRAAELG--ARAAVVESH-KLGGTCVNV---GCVPKKVMWNTAVHSEFMHDHADYGFPSCEG 92 (478)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHH---SHHHHHHHHHHHHHHHHHTTTTTTTSCCCCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCccccc---CccchHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence 3468999999999999999999999 999999975 799998642 221 112111000
Q ss_pred c--cCccccc-------ccc---ccccccCCCC--------CCC------CCCCCCChhhhhhccCCCCCC---CCCCCC
Q psy12350 799 M--YKSLKTN-------LPK---DLMELCGYGH--------KGN------ADKSYIGAKDVLENYNHPIYP---EFKGKD 849 (1129)
Q Consensus 799 ~--y~~~~~~-------~~~---~~~~~~~~~~--------~~~------~~~~~~~~~~v~~~~~~P~~P---~i~G~~ 849 (1129)
. +..+... ... ....-....+ ... ....+.....++.+|+.|+.| ++||.+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~~p~~p~~~~i~G~~ 172 (478)
T 3dk9_A 93 KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMPSTPHESQIPGAS 172 (478)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCEEECCCCTTTSTTGG
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCCCCCCCCcCCCCCCc
Confidence 0 0000000 000 0000000000 000 000112223344499999999 999976
Q ss_pred CCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccc
Q psy12350 850 MCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVT 928 (1129)
Q Consensus 850 ~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 928 (1129)
..+++.++...... +|+|+|||+|.+|+|+|..|++.|.+|+++.+.+..++. .+.+.....+.+
T Consensus 173 ----~~~~~~~~~~~~~~-~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l--------- 238 (478)
T 3dk9_A 173 ----LGITSDGFFQLEEL-PGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEEL--------- 238 (478)
T ss_dssp ----GSBCHHHHTTCCSC-CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHH---------
T ss_pred ----eeEchHHhhchhhc-CccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHH---------
Confidence 34566665554443 799999999999999999999999999999987765432 222222111111
Q ss_pred ccCCCCCeEEcCC--eeEEeC--Cc----EEecC---C----cEeeccEEEEccCccCcCCCCC-CCCCeeecCCccccc
Q psy12350 929 SLCLPNNVVLKPD--VAELTP--TG----VRFQD---G----SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPL 992 (1129)
Q Consensus 929 ~~~~~~~V~~~~~--i~~v~~--~~----V~~~d---G----~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~l 992 (1129)
. ..+|+++.+ +.+++. ++ +.+.| | +++++|.||+|||++|+.++|. +..|+++++++...+
T Consensus 239 ~---~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~v 315 (478)
T 3dk9_A 239 E---NAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIV 315 (478)
T ss_dssp H---HTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCC
T ss_pred H---HCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEee
Confidence 0 126777665 777753 33 55665 2 5689999999999999988663 447788876654444
Q ss_pred ccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 993 YKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 993 y~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..+ +.++.||||++|++... ...+.+..||+.+|+.+.|.
T Consensus 316 d~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 356 (478)
T 3dk9_A 316 DEF-QNTNVKGIYAVGDVCGKALLTPVAIAAGRKLAHRLFEY 356 (478)
T ss_dssp CTT-CBCSSTTEEECGGGGCSSCCHHHHHHHHHHHHHHHHSC
T ss_pred CCC-cccCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHcCC
Confidence 433 35689999999998844 45688999999999999875
No 104
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=99.78 E-value=4.8e-19 Score=199.59 Aligned_cols=268 Identities=14% Similarity=0.145 Sum_probs=169.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccccccc---cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKTNLPK---DL 811 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~~~~~---~~ 811 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+ ..+||.|.... +++.. .+. ...+...+.....+ .+
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~gg~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~v~~ 89 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAARSG--FSVAILDK-AVAGGLTAEAPLVENYLGFK--SIV-GSELAKLFADHAANYAKIR 89 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SSTTGGGGGCSCBCCBTTBS--SBC-HHHHHHHHHHHHHTTSEEE
T ss_pred CCcEEEECcCHHHHHHHHHHHhCC--CcEEEEeC-CCCCccccccchhhhcCCCc--ccC-HHHHHHHHHHHHHHcCCEE
Confidence 357899999999999999999999 99999999 57899887431 12110 000 00000000000000 00
Q ss_pred c--cccCCCCCCC------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 812 M--ELCGYGHKGN------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 812 ~--~~~~~~~~~~------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
. .......... ....+.....++.+|+.|+.|++||.+.|.+..+|.....+...+.+|+|+|||+|.+|+|
T Consensus 90 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~viG~G~~g~e 169 (319)
T 3cty_A 90 EGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGYLFKGKRVVTIGGGNSGAI 169 (319)
T ss_dssp ETCCEEEEEEETTEEEEEESSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGGGGBTSEEEEECCSHHHHH
T ss_pred EEeeEEEEEEeCCEEEEEECCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchhhcCCCeEEEECCCHHHHH
Confidence 0 0000000000 0001111222333888999999999887766556654433333456899999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEec---
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQ--- 953 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~--- 953 (1129)
+|..|++.+++|+++.+.+.... ...+.+.+ . ..+|++..+ +.++..+ +|++.
T Consensus 170 ~a~~l~~~g~~V~~i~~~~~~~~-~~~l~~~l-------------~---~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~ 232 (319)
T 3cty_A 170 AAISMSEYVKNVTIIEYMPKYMC-ENAYVQEI-------------K---KRNIPYIMNAQVTEIVGDGKKVTGVKYKDRT 232 (319)
T ss_dssp HHHHHTTTBSEEEEECSSSSCCS-CHHHHHHH-------------H---HTTCCEECSEEEEEEEESSSSEEEEEEEETT
T ss_pred HHHHHHhhCCcEEEEEcCCccCC-CHHHHHHH-------------h---cCCcEEEcCCeEEEEecCCceEEEEEEEEcC
Confidence 99999999999999987654321 11111111 0 125555544 7777543 36675
Q ss_pred CCc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHH
Q psy12350 954 DGS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 954 dG~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~ 1029 (1129)
+|+ ++++|.||+|||++|+.+++.. .|+++++++...+..+ +.++.||||++|++... .....+..||+.+|..
T Consensus 233 ~g~~~~i~~D~vi~a~G~~p~~~~l~~-~gl~~~~~g~i~vd~~-~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~ 310 (319)
T 3cty_A 233 TGEEKLIETDGVFIYVGLIPQTSFLKD-SGVKLDERGYIVVDSR-QRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALS 310 (319)
T ss_dssp TCCEEEECCSEEEECCCEEECCGGGTT-SCCCBCTTSCBCCCTT-CBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHH
T ss_pred CCceEEEecCEEEEeeCCccChHHHhh-ccccccCCccEeCCCC-CccCCCCEEEeecccCcchhhHHHHHHHHHHHHHH
Confidence 676 5799999999999999888864 6777766544444444 45789999999999764 3567888888888876
Q ss_pred Hc
Q psy12350 1030 MQ 1031 (1129)
Q Consensus 1030 l~ 1031 (1129)
+.
T Consensus 311 i~ 312 (319)
T 3cty_A 311 LY 312 (319)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 105
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=99.78 E-value=2.4e-19 Score=211.82 Aligned_cols=265 Identities=11% Similarity=0.096 Sum_probs=169.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc----ccccCCCCCCCCCCCCccccccCccccccccccccc--
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG----TWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-- 814 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG----~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-- 814 (1129)
+++|||+|++|+++|..|++.++..+|+|||+++.+|. .+.+.. +. .+ ....+.......+..+
T Consensus 4 ~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~~--~~----~~----~~~~~~~~~~~~~~~~gi 73 (452)
T 3oc4_A 4 KIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYFN--HT----IN----ELHEARYITEEELRRQKI 73 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC--------------------------CCCCHHHHHHTTE
T ss_pred CEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhhc--CC----CC----CHHHhhcCCHHHHHHCCC
Confidence 67999999999999999999944499999999998872 221100 00 00 0000000000000000
Q ss_pred ---cC-----CCCCCC--------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCC-----CCCeEE
Q psy12350 815 ---CG-----YGHKGN--------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPF-----AGKQAV 873 (1129)
Q Consensus 815 ---~~-----~~~~~~--------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~-----~gk~Vv 873 (1129)
.. ...... ....+.....++.+|+.|..|++||.+. ..++++..+.+...+ .+|+|+
T Consensus 74 ~~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vv 151 (452)
T 3oc4_A 74 QLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQT--EKLLKYKFLSGALAAVPLLENSQTVA 151 (452)
T ss_dssp EEECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTC--TTEEEGGGCC----CCHHHHTCSEEE
T ss_pred EEEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCC--CCEEEeCCHHHHHHHHHHHhcCCEEE
Confidence 00 000000 0001112233444999999999999874 457787777665443 579999
Q ss_pred EEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--C
Q psy12350 874 VVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT--P 947 (1129)
Q Consensus 874 VVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~--~ 947 (1129)
|||+|.+|+|+|..+++.|.+|+++++.+..++ +.+.+.....+.+. ..+|++..+ |++++ +
T Consensus 152 ViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~ 219 (452)
T 3oc4_A 152 VIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLE------------KQAVIFHFEETVLGIEETA 219 (452)
T ss_dssp EECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHH------------TTTEEEEETCCEEEEEECS
T ss_pred EECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHH------------HcCCEEEeCCEEEEEEccC
Confidence 999999999999999999999999998776654 23332222221111 125666643 88886 3
Q ss_pred Cc--EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------c
Q psy12350 948 TG--VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------L 1014 (1129)
Q Consensus 948 ~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~ 1014 (1129)
++ |.+++| ++++|.||+|||++|+.+++.. . +.+++++...+..+ +.++.||||++|++... .
T Consensus 220 ~~v~v~~~~g-~i~aD~Vv~A~G~~p~~~~l~~-~-~~~~~~g~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~~~ 295 (452)
T 3oc4_A 220 NGIVLETSEQ-EISCDSGIFALNLHPQLAYLDK-K-IQRNLDQTIAVDAY-LQTSVPNVFAIGDCISVMNEPVAETFYAP 295 (452)
T ss_dssp SCEEEEESSC-EEEESEEEECSCCBCCCSSCCT-T-SCBCTTSCBCCCTT-CBCSSTTEEECGGGBCEEEGGGTEEECCC
T ss_pred CeEEEEECCC-EEEeCEEEECcCCCCChHHHHh-h-hccCCCCCEEECcC-ccCCCCCEEEEEeeEEeccccCCceeecc
Confidence 33 566666 8999999999999999988864 2 56655544334333 44689999999998753 2
Q ss_pred hhHHHHHHHHHHHHHHcCC
Q psy12350 1015 LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.++.+..||+.+|+.+.|.
T Consensus 296 ~~~~A~~~g~~aa~~i~g~ 314 (452)
T 3oc4_A 296 LVNNAVRTGLVVANNLEEK 314 (452)
T ss_dssp CHHHHHHHHHHHTTSSSSC
T ss_pred hHHHHHHHHHHHHHHhcCC
Confidence 5688999999999998875
No 106
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.78 E-value=1.7e-20 Score=232.73 Aligned_cols=258 Identities=13% Similarity=0.074 Sum_probs=173.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..+||+|||||+|||+||..|++ .|++|+|||+++.+||+|.+. ..++
T Consensus 390 ~~~~VvIIGgG~AGl~aA~~La~--~G~~V~liE~~~~~GG~~~~~--------------~~~p---------------- 437 (690)
T 3k30_A 390 SDARVLVVGAGPSGLEAARALGV--RGYDVVLAEAGRDLGGRVTQE--------------SALP---------------- 437 (690)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSCTHHHHH--------------HTST----------------
T ss_pred ccceEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCEeeec--------------cCCC----------------
Confidence 45899999999999999999999 569999999999999998741 0000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
.+....++.+|+..+.+++ ++ .++++++|+.- ......|| +||+
T Consensus 438 --------~~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~~--------------------~~~~~~~d-----~lvl 482 (690)
T 3k30_A 438 --------GLSAWGRVKEYREAVLAELPNV--EIYRESPMTGD--------------------DIVEFGFE-----HVIT 482 (690)
T ss_dssp --------TCGGGGHHHHHHHHHHHTCTTE--EEESSCCCCHH--------------------HHHHTTCC-----EEEE
T ss_pred --------chhHHHHHHHHHHHHHHHcCCC--EEEECCeecHH--------------------HHhhcCCC-----EEEE
Confidence 1123346888888888876 55 67777665321 11223588 9999
Q ss_pred ecccCCC------CCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 167 MQGHVTL------PSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 167 AtG~~~~------p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
|||.... |..|++||.....+ .....+ ...
T Consensus 483 AtG~~~~~~~~~~~~~~~i~G~~~~~v-----------------~~~~~~---------------------------l~~ 518 (690)
T 3k30_A 483 ATGATWRTDGVARFHTTALPIAEGMQV-----------------LGPDDL---------------------------FAG 518 (690)
T ss_dssp CCCEEECSSCCSSSCSSCCCBCTTSEE-----------------ECHHHH---------------------------HTT
T ss_pred cCCCccccccccccCCCCCCCCCCCcE-----------------EcHHHH---------------------------hCC
Confidence 9994322 45666655211000 000000 000
Q ss_pred cccccccccceeEeeceeeeecCCCC--CCCCcccchhhhcccccEEEEccccCCcccccC---------------CCCe
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAA--NGPSGLDITHDISTEATTVFLSHHSEHVKKLRF---------------PNNV 303 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vG--gG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~---------------~~~i 303 (1129)
....+++++| || +|.+|+|+|..|++.+.+|+++++.+.+.+... .-++
T Consensus 519 ---~~~~g~~VvV-----------iG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i 584 (690)
T 3k30_A 519 ---RLPDGKKVVV-----------YDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVAR 584 (690)
T ss_dssp ---CCCSSSEEEE-----------EECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEE
T ss_pred ---CCCCCCEEEE-----------EcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEE
Confidence 0112344444 78 999999999999999999999999887654321 1146
Q ss_pred EEcCCceEEcCCceEEc-----CCCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEecccc
Q psy12350 304 VKKPDIAELTPTGVRFQ-----DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTY 378 (1129)
Q Consensus 304 ~~~~~v~~~~~~~v~~~-----dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~ 378 (1129)
..++.|++++++++.+. +++++++|.||+|+|++++..++.. + ... .. .++.|++|.+|...
T Consensus 585 ~~~~~V~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~~-l--~~~------~~----~t~~~~VyaiGD~~ 651 (690)
T 3k30_A 585 VTDHAVVAVGAGGVTVRDTYASIERELECDAVVMVTARLPREELYLD-L--VAR------RD----AGEIASVRGIGDAW 651 (690)
T ss_dssp EESEEEEEEETTEEEEEETTTCCEEEEECSEEEEESCEEECCHHHHH-H--HHH------HH----HTSCSEEEECGGGT
T ss_pred EcCcEEEEEECCeEEEEEccCCeEEEEECCEEEECCCCCCChHHHHH-H--hhh------hc----ccCCCCEEEEeCCC
Confidence 66778999988876553 4557899999999999999776542 1 110 00 35788999999875
Q ss_pred ccc-ccccccceeeehhhcccccccc
Q psy12350 379 RYP-FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 379 ~~~-~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
..+ +.....||+.+|.++.+.+.+.
T Consensus 652 ~~~~~~~A~~~g~~aa~~i~~~l~g~ 677 (690)
T 3k30_A 652 APGTIAAAVWSGRRAAEEFDAVLPSN 677 (690)
T ss_dssp SCBCHHHHHHHHHHHHHHTTCCCCCT
T ss_pred chhhHHHHHHHHHHHHHHHHhhccCC
Confidence 432 2334588888899888776654
No 107
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=99.78 E-value=5e-20 Score=219.23 Aligned_cols=273 Identities=18% Similarity=0.235 Sum_probs=176.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC---------------------CCCCccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ---------------------YGLPVHS- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~---------------------~g~p~~~- 797 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+++.+||+|... ||.+ +|++...
T Consensus 7 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~---g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~ 81 (474)
T 1zmd_A 7 ADVTVIGSGPGGYVAAIKAAQLG--FKTVCIEKNETLGGTCLNV---GCIPSKALLNNSHYYHMAHGTDFASRGIEMSEV 81 (474)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCcCCccccc---CccchHHHHHHHHHHHHhhhhhHhhCccccCCC
Confidence 46899999999999999999999 9999999998999999742 2200 0111000
Q ss_pred -cccCccccc-------cc---cccccccCCCC--------CCC-------C-C-CCCCChhhhhhccCCCCCCCCCCCC
Q psy12350 798 -SMYKSLKTN-------LP---KDLMELCGYGH--------KGN-------A-D-KSYIGAKDVLENYNHPIYPEFKGKD 849 (1129)
Q Consensus 798 -~~y~~~~~~-------~~---~~~~~~~~~~~--------~~~-------~-~-~~~~~~~~v~~~~~~P~~P~i~G~~ 849 (1129)
..+..+... .. .....-.+..+ ... . . ..+....-++.+|+.|+.|+++|++
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~g~~ 161 (474)
T 1zmd_A 82 RLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEVTPFPGITID 161 (474)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTCCCC
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCCCCC
Confidence 000000000 00 00000000000 000 0 0 0111122233499999999999976
Q ss_pred CCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccc
Q psy12350 850 MCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERV 927 (1129)
Q Consensus 850 ~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 927 (1129)
. ..++|+.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+.+
T Consensus 162 ~--~~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l-------- 230 (474)
T 1zmd_A 162 E--DTIVSSTGALSLKK-VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRIL-------- 230 (474)
T ss_dssp S--SSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHH--------
T ss_pred c--CcEEcHHHHhhccc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHH--------
Confidence 4 24788877765544 379999999999999999999999999999998776554 2222222111111
Q ss_pred cccCCCCCeEEcCC--eeEEeCC--c-EEe-------cCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCccccccc
Q psy12350 928 TSLCLPNNVVLKPD--VAELTPT--G-VRF-------QDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYK 994 (1129)
Q Consensus 928 ~~~~~~~~V~~~~~--i~~v~~~--~-V~~-------~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~ 994 (1129)
. ..+|+++.+ |.+++.+ + +.+ .+|+++++|.||+|+|++|+.++|. +.+|+++++++...+..
T Consensus 231 -~---~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~ 306 (474)
T 1zmd_A 231 -Q---KQGFKFKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNT 306 (474)
T ss_dssp -H---HTTCEEECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCT
T ss_pred -H---HCCCEEEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECc
Confidence 0 125666654 7777643 2 433 3567899999999999999988753 33577776554334444
Q ss_pred ceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 995 HTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 995 ~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 307 ~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 345 (474)
T 1zmd_A 307 R-FQTKIPNIYAIGDVVAGPMLAHKAEDEGIICVEGMAGG 345 (474)
T ss_dssp T-CBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred C-CccCCCCEEEeeecCCCCccHHHHHHHHHHHHHHhcCC
Confidence 3 34689999999999765 35689999999999999885
No 108
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=99.78 E-value=5.7e-20 Score=217.93 Aligned_cols=269 Identities=15% Similarity=0.194 Sum_probs=174.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~-- 798 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+ +.+||+|.. .||-+ ||++....
T Consensus 6 ~DVvVIGaG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~---~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (463)
T 4dna_A 6 YDLFVIGGGSGGVRSGRLAAALG--KKVAIAEE-FRYGGTCVI---RGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRF 79 (463)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEEES-SCTTHHHHH---HSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEE
T ss_pred CcEEEECcCHHHHHHHHHHHhCC--CEEEEEeC-CCCCCcccc---cCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 47899999999999999999999 99999999 789999873 23210 01100000
Q ss_pred ccCcccc-------cccccc---ccccCCCC--------CCC------CCCCCCChhhhhhccCCCC-CCCCCCCCCCCC
Q psy12350 799 MYKSLKT-------NLPKDL---MELCGYGH--------KGN------ADKSYIGAKDVLENYNHPI-YPEFKGKDMCQI 853 (1129)
Q Consensus 799 ~y~~~~~-------~~~~~~---~~~~~~~~--------~~~------~~~~~~~~~~v~~~~~~P~-~P~i~G~~~f~g 853 (1129)
.|..+.. ...... ..-....+ ... ....+.....++.+|+.|. +|++||.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~--- 156 (463)
T 4dna_A 80 DWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHEL--- 156 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGG---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccc---
Confidence 0000000 000000 00000000 000 0001111222334899999 999999762
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
++++.++..... .+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+.....+.+ .
T Consensus 157 -~~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l---------~--- 222 (463)
T 4dna_A 157 -CITSNEAFDLPA-LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAM---------E--- 222 (463)
T ss_dssp -CBCHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHH---------H---
T ss_pred -cccHHHHhhhhc-CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH---------H---
Confidence 445555544333 3899999999999999999999999999999987655432 222221111111 0
Q ss_pred CCCeEEcCC--eeEEeCC-----cEE-ecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCC
Q psy12350 933 PNNVVLKPD--VAELTPT-----GVR-FQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 933 ~~~V~~~~~--i~~v~~~-----~V~-~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
..+|+++.+ |.+++.+ .|. +.||+ +++|.||+|||++|+.++|. +..|+++++++...+..+ +.++.||
T Consensus 223 ~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~ 300 (463)
T 4dna_A 223 EKGIRILCEDIIQSVSADADGRRVATTMKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAF-SRTSTPG 300 (463)
T ss_dssp HTTCEEECSCCEEEEEECTTSCEEEEESSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTT-CBCSSTT
T ss_pred HCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcC-CCCCCCC
Confidence 125666654 7787643 367 78898 99999999999999988863 447888877654444443 3478999
Q ss_pred cEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1004 MFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1004 l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||++|++... ...+.+..||+.+|+.+.|.
T Consensus 301 iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 331 (463)
T 4dna_A 301 IYALGDVTDRVQLTPVAIHEAMCFIETEYKN 331 (463)
T ss_dssp EEECSGGGSSCCCHHHHHHHHHHHHHHHHSS
T ss_pred EEEEEecCCCCCChHHHHHHHHHHHHHHcCC
Confidence 9999998764 35689999999999999874
No 109
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=99.78 E-value=2.3e-19 Score=214.68 Aligned_cols=185 Identities=22% Similarity=0.188 Sum_probs=136.0
Q ss_pred hhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhh
Q psy12350 833 VLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDI 911 (1129)
Q Consensus 833 v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~ 911 (1129)
++.+|+.|..|+++|.+.. .++++.++.+... .+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+
T Consensus 149 viATGs~p~~p~i~g~~~~--~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~ 225 (499)
T 1xdi_A 149 LVATGASPRILPSAQPDGE--RILTWRQLYDLDA-LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADA 225 (499)
T ss_dssp EECCCEEECCCGGGCCCSS--SEEEGGGGGGCSS-CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHH
T ss_pred EEcCCCCCCCCCCCCCCcC--cEEehhHhhhhhc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHH
Confidence 4449999999999998642 3777777665443 4799999999999999999999999999999987765542 2222
Q ss_pred hccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeee
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKV 984 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~ 984 (1129)
.....+.+ . ..+|+++.+ |++++.++ |.+.||+++++|.||+|+|++|+.++|. +.+|+++
T Consensus 226 ~~~l~~~l---------~---~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~ 293 (499)
T 1xdi_A 226 ALVLEESF---------A---ERGVRLFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQL 293 (499)
T ss_dssp HHHHHHHH---------H---HTTCEEETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSSSCTTTTTCCC
T ss_pred HHHHHHHH---------H---HCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCcCCchhcCceE
Confidence 22111111 0 125666654 78886432 5567888999999999999999988853 4478888
Q ss_pred cCCcccccccceeecCCCCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 985 VNKNVQPLYKHTINIEHPTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 985 ~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++++...+... +.++.|+||++|++.... ..+.+..||+.+|..+.|.
T Consensus 294 ~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 342 (499)
T 1xdi_A 294 GRGNYLTVDRV-SRTLATGIYAAGDCTGLLPLASVAAMQGRIAMYHALGE 342 (499)
T ss_dssp BTTTBCCCCSS-SBCSSTTEEECSGGGTSCSCHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCEEECCC-cccCCCCEEEEeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 76553334333 345899999999997653 4688999999999999986
No 110
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=99.78 E-value=3.9e-20 Score=220.37 Aligned_cols=296 Identities=14% Similarity=0.175 Sum_probs=166.8
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELS 85 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~ 85 (1129)
++..++|+|||||+||++||+.|++.+.+.+|+|||+++.++... ++....++.....+. .....|.
T Consensus 8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r------------~~lsk~l~~~~~~~~-~~~~~~~ 74 (493)
T 1m6i_A 8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMR------------PPLSKELWFSDDPNV-TKTLRFK 74 (493)
T ss_dssp CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCS------------GGGGTGGGCC--CTH-HHHCEEE
T ss_pred CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCC------------CCCCHHhhcCCccch-hhccccc
Confidence 345689999999999999999999876789999999987654110 000011111100000 0011122
Q ss_pred CCCCCC-----CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEeccee
Q psy12350 86 GYHHKG-----HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQV 160 (1129)
Q Consensus 86 d~~~~~-----~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 160 (1129)
+++... .+...+....++.+ ..+.++ .++++++|+.++. +.+.+.+. + ...+.||
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~gv--~~~~g~~v~~id~-----~~~~V~~~---~--g~~i~yd--- 134 (493)
T 1m6i_A 75 QWNGKERSIYFQPPSFYVSAQDLPH-----IENGGV--AVLTGKKVVQLDV-----RDNMVKLN---D--GSQITYE--- 134 (493)
T ss_dssp CTTSCEEESBSSCGGGSBCTTTTTT-----STTCEE--EEEETCCEEEEEG-----GGTEEEET---T--SCEEEEE---
T ss_pred ccccccccccccchHhhcchhhhhh-----hhcCCe--EEEcCCEEEEEEC-----CCCEEEEC---C--CCEEECC---
Confidence 221100 00000111111100 112333 7788899998876 23444332 2 2457799
Q ss_pred eeEEEEecccCCCCCccccccchhhh-cccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQD-VRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARC 239 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 239 (1129)
+|||||| +.|..|++++..... ..+ .+. ++.
T Consensus 135 --~lviATG--s~p~~~~~~~~~~~~~~~~---------------v~~-----------------------------~~~ 166 (493)
T 1m6i_A 135 --KCLIATG--GTPRSLSAIDRAGAEVKSR---------------TTL-----------------------------FRK 166 (493)
T ss_dssp --EEEECCC--EEECCCHHHHTSCHHHHHT---------------EEE-----------------------------CCS
T ss_pred --EEEECCC--CCCCCCCCcccccccccCc---------------eEE-----------------------------EcC
Confidence 9999999 778877765421000 000 000 011
Q ss_pred cccccc-----ccccceeEeeceeeeecCCCCCCCCcccchhhhcc----cccEEEEccccCCcccccCC----------
Q psy12350 240 SEDFTE-----FRKDKYKIINEKAFVRDPGAANGPSGLDITHDIST----EATTVFLSHHSEHVKKLRFP---------- 300 (1129)
Q Consensus 240 ~~~~~~-----~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~----~~~~V~lv~r~~~~~~~~~~---------- 300 (1129)
.+++.. ...++++| ||||++|+|+|..|++ .+.+|+++++.+.++...++
T Consensus 167 ~~d~~~l~~~~~~~~~vvV-----------iGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~ 235 (493)
T 1m6i_A 167 IGDFRSLEKISREVKSITI-----------IGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEK 235 (493)
T ss_dssp HHHHHHHHHHHHHCSEEEE-----------ECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCeEEE-----------ECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHH
Confidence 111100 01233433 8999999999999887 46789999887644332221
Q ss_pred -----CCeEEcCCceEEcC--C--ceEEcCCCEeecCEEEEcccccccCCCCCCCCCeEeec-Cc--ccccccccccCCC
Q psy12350 301 -----NNVVKKPDIAELTP--T--GVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN-KN--VQPLYKHLINIEH 368 (1129)
Q Consensus 301 -----~~i~~~~~v~~~~~--~--~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~-~~--~~~l~~~~~~~~~ 368 (1129)
-++..++.|+++++ + .|.++||+++++|.||+|+|++++.++++ ..++.+++ ++ .++-+.+. .
T Consensus 236 l~~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l~~-~~gl~~~~~~ggi~Vd~~l~t----~ 310 (493)
T 1m6i_A 236 VRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVELAK-TGGLEIDSDFGGFRVNAELQA----R 310 (493)
T ss_dssp HHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTTHH-HHTCCBCTTTCSEECCTTCEE----E
T ss_pred HHhcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHHHH-HcCCccccCCCcEEECCCccc----C
Confidence 14556778888863 2 37788999999999999999999988875 23444443 11 22223222 4
Q ss_pred CCeEEecccccccc-----------cccccceeeehhhccc
Q psy12350 369 PSMCIIGYTYRYPF-----------LHESCGIKVVNKNVQP 398 (1129)
Q Consensus 369 p~l~~~G~~~~~~~-----------~~~~~~~~~~a~~~~~ 398 (1129)
|++|++|.....+. ..+..|++.+|.++.+
T Consensus 311 ~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g 351 (493)
T 1m6i_A 311 SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTG 351 (493)
T ss_dssp TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTS
T ss_pred CCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcC
Confidence 78999887754211 0223666666666553
No 111
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=99.78 E-value=7.5e-19 Score=199.39 Aligned_cols=280 Identities=14% Similarity=0.081 Sum_probs=169.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcc----cCCcCcccccCCCCCCCCCCCCc--c-ccccCcccccccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ----ADNIGGTWLYTEHIGCDQYGLPV--H-SSMYKSLKTNLPKDL 811 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~----~~~~GG~w~~~~~~g~~~~g~p~--~-~~~y~~~~~~~~~~~ 811 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+ ...+||.|.........+ +.|. . ..+...+.....+.-
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g 84 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAARAE--LKPLLFEGWMANDIAPGGQLTTTTDVENFP-GFPEGILGVELTDKFRKQSERFG 84 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCCEEECCSSBTTBCTTCGGGGCSEECCST-TCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeccCccccCCCceeeeccccccCC-CCccCCCHHHHHHHHHHHHHHCC
Confidence 357899999999999999999999 99999999 667899887532110000 0100 0 000000000000000
Q ss_pred ccc-cC----CCCCCC-C-----CCCCCChhhhhhccCCCCCCCCCCCCC----CCCcEEeeccCCCCCC--CCCCeEEE
Q psy12350 812 MEL-CG----YGHKGN-A-----DKSYIGAKDVLENYNHPIYPEFKGKDM----CQIPILHSRDYRTPEP--FAGKQAVV 874 (1129)
Q Consensus 812 ~~~-~~----~~~~~~-~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~----f~g~~~hs~~~~~~~~--~~gk~VvV 874 (1129)
..+ .+ ...... + ...+.....++.+|+.|..|++||.+. |.+..+|+..+.+... ..+|+|+|
T Consensus 85 v~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V 164 (333)
T 1vdc_A 85 TTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAV 164 (333)
T ss_dssp CEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEE
T ss_pred CEEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEE
Confidence 000 00 000000 0 001111122233899999999999876 6666677655433332 57899999
Q ss_pred EcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc---
Q psy12350 875 VGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG--- 949 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~--- 949 (1129)
||+|.+|+|+|..|++.+.+|+++.+.+.... ...+.. ..+ ...+|++..+ +.++.+++
T Consensus 165 vG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~-~~~~~~------------~~~---~~~gv~i~~~~~v~~i~~~~~~~ 228 (333)
T 1vdc_A 165 IGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA-SKIMQQ------------RAL---SNPKIDVIWNSSVVEAYGDGERD 228 (333)
T ss_dssp ECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS-CHHHHH------------HHH---TCTTEEEECSEEEEEEEESSSSS
T ss_pred ECCChHHHHHHHHHHhcCCeEEEEecCCcCCc-cHHHHH------------HHH---hCCCeeEecCCceEEEeCCCCcc
Confidence 99999999999999999999999988654311 000000 000 1236777654 77776432
Q ss_pred ----EEec---CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHH
Q psy12350 950 ----VRFQ---DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNL 1018 (1129)
Q Consensus 950 ----V~~~---dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~ 1018 (1129)
|++. +| +++++|.||+|||++|+.+++. .++.+++++...+..+.+.++.||||++|++... .....
T Consensus 229 ~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~~--~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~ 306 (333)
T 1vdc_A 229 VLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKFLD--GGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAIT 306 (333)
T ss_dssp SEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGT--TSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHH
T ss_pred ceeeEEEEecCCCceEEEecCEEEEEeCCccchHHhh--ccccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHH
Confidence 7775 46 4689999999999999988876 3566665554455555556789999999998754 34566
Q ss_pred HHHHHHHHHHHH----cCCCCCCCH
Q psy12350 1019 FDLQVRLFQQLM----QGHITLPSK 1039 (1129)
Q Consensus 1019 ~e~qa~~~a~~l----~g~~~lp~~ 1039 (1129)
+..||+.+|..+ .++..+|.+
T Consensus 307 A~~~g~~aa~~i~~~l~~~~~~~~~ 331 (333)
T 1vdc_A 307 AAGTGCMAALDAEHYLQEIGSQEGK 331 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHC------
T ss_pred HHHhHHHHHHHHHHHHHhccccccC
Confidence 777777766644 444444443
No 112
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.78 E-value=3.3e-20 Score=212.32 Aligned_cols=263 Identities=15% Similarity=0.224 Sum_probs=168.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccc-----cc--
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT-----NL-- 807 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~-----~~-- 807 (1129)
..+++|||+|++|+.+|..|++.| +|+|+|+++..+ |.... ..+. ++ ...+...... +.
T Consensus 8 ~~~vvIIGgG~AGl~aA~~l~~~g---~V~lie~~~~~~--~~~~~l~~~~~g~----~~-~~~~~~~~~~~~~~~~v~~ 77 (367)
T 1xhc_A 8 GSKVVIVGNGPGGFELAKQLSQTY---EVTVIDKEPVPY--YSKPMLSHYIAGF----IP-RNRLFPYSLDWYRKRGIEI 77 (367)
T ss_dssp -CEEEEECCSHHHHHHHHHHTTTS---EEEEECSSSSCC--CCSTTHHHHHTTS----SC-GGGGCSSCHHHHHHHTEEE
T ss_pred CCcEEEECCcHHHHHHHHHHhhcC---CEEEEECCCCCc--cccchhHHHHhCC----CC-HHHhccCCHHHHHhCCcEE
Confidence 457899999999999999998877 899999987542 11000 0000 00 0000000000 00
Q ss_pred --cccccccc--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCC-----CCCeEEEEcCC
Q psy12350 808 --PKDLMELC--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPF-----AGKQAVVVGSG 878 (1129)
Q Consensus 808 --~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~-----~gk~VvVVG~G 878 (1129)
........ ......+ ...+....-++++|+.|+.|++||.+ .++++.++.+...+ .+|+|+|||+|
T Consensus 78 ~~g~~v~~id~~~~~V~~~-g~~~~~d~lViATGs~p~~p~i~G~~----~v~~~~~~~~~~~l~~~~~~~~~vvViGgG 152 (367)
T 1xhc_A 78 RLAEEAKLIDRGRKVVITE-KGEVPYDTLVLATGARAREPQIKGKE----YLLTLRTIFDADRIKESIENSGEAIIIGGG 152 (367)
T ss_dssp ECSCCEEEEETTTTEEEES-SCEEECSEEEECCCEEECCCCSBTGG----GEECCCSHHHHHHHHHHHHHHSEEEEEECS
T ss_pred EECCEEEEEECCCCEEEEC-CcEEECCEEEECCCCCCCCCCCCCcC----CEEEEcCHHHHHHHHHHhhcCCcEEEECCC
Confidence 00000000 0000000 11122333445599999999999942 46665544333222 46999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEecCCc
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRFQDGS 956 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG~ 956 (1129)
.+|+|+|..|++.|.+|+++++.+..+++.+.+.....+.+ . ..+|++..+ |++++.++|+++||+
T Consensus 153 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l---------~---~~gV~i~~~~~v~~i~~~~v~~~~g~ 220 (367)
T 1xhc_A 153 FIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDML---------E---ETGVKFFLNSELLEANEEGVLTNSGF 220 (367)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHH---------H---HTTEEEECSCCEEEECSSEEEETTEE
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHH---------H---HCCCEEEcCCEEEEEEeeEEEECCCE
Confidence 99999999999999999999988766553332222221111 1 126777654 888887789999998
Q ss_pred EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----chhHHHHHHHHHHHHHHc
Q psy12350 957 YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 957 ~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----~~~~~~e~qa~~~a~~l~ 1031 (1129)
+++|.||+|||++|+.++++. .|++.++ ++ .+..+ +.++.||||++|++... ..++.+..||+.+|+.+.
T Consensus 221 -i~~D~vi~a~G~~p~~~ll~~-~gl~~~~-gi-~Vd~~-~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~ 295 (367)
T 1xhc_A 221 -IEGKVKICAIGIVPNVDLARR-SGIHTGR-GI-LIDDN-FRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILK 295 (367)
T ss_dssp -EECSCEEEECCEEECCHHHHH-TTCCBSS-SE-ECCTT-SBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHT
T ss_pred -EEcCEEEECcCCCcCHHHHHh-CCCCCCC-CE-EECCC-cccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhc
Confidence 999999999999999876654 6777653 32 33322 34589999999998632 357899999999999998
Q ss_pred CC
Q psy12350 1032 GH 1033 (1129)
Q Consensus 1032 g~ 1033 (1129)
|.
T Consensus 296 g~ 297 (367)
T 1xhc_A 296 GE 297 (367)
T ss_dssp TC
T ss_pred CC
Confidence 75
No 113
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=99.78 E-value=1.5e-19 Score=207.53 Aligned_cols=273 Identities=16% Similarity=0.193 Sum_probs=170.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccc-----cccCccccc-------
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHS-----SMYKSLKTN------- 806 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~-----~~y~~~~~~------- 806 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||.|... ++....+..|... .+...+...
T Consensus 14 ~~dvvIIG~G~aGl~aA~~l~~~g--~~v~lie~~~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (360)
T 3ab1_A 14 MRDLTIIGGGPTGIFAAFQCGMNN--ISCRIIESMPQLGGQLAAL-YPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPD 90 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHHHT-CTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCE
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CCEEEEecCCCCCCccccc-CCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCE
Confidence 357899999999999999999999 9999999999999999632 2221111111000 000000000
Q ss_pred --ccccccccc---C--CCCCCCCCCCCCChhhhhhccC---CCCCCCCCC-CCCCCCcEEeeccCCCCCCCCCCeEEEE
Q psy12350 807 --LPKDLMELC---G--YGHKGNADKSYIGAKDVLENYN---HPIYPEFKG-KDMCQIPILHSRDYRTPEPFAGKQAVVV 875 (1129)
Q Consensus 807 --~~~~~~~~~---~--~~~~~~~~~~~~~~~~v~~~~~---~P~~P~i~G-~~~f~g~~~hs~~~~~~~~~~gk~VvVV 875 (1129)
.......+. + +.........+.....++.+|+ .|..|++|| .+.|.+..+|.. +++..++.+|+|+||
T Consensus 91 ~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~-~~~~~~~~~~~vvVv 169 (360)
T 3ab1_A 91 VVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVEDFKGKRVVIV 169 (360)
T ss_dssp EECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESS-CSCGGGGTTCEEEEE
T ss_pred EEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEe-cCCHHHcCCCcEEEE
Confidence 000000000 0 0000000001111122333777 688888999 877777545533 455556789999999
Q ss_pred cCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----
Q psy12350 876 GSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT----- 948 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----- 948 (1129)
|+|.+|+|+|..|++.+.+|+++.+.+...... .+..... +... ..+|++..+ |.+++.+
T Consensus 170 G~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~-~~~~~l~---------~~~~---~~gv~i~~~~~v~~i~~~~~~v~ 236 (360)
T 3ab1_A 170 GGGDSALDWTVGLIKNAASVTLVHRGHEFQGHG-KTAHEVE---------RARA---NGTIDVYLETEVASIEESNGVLT 236 (360)
T ss_dssp CSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCS-HHHHSSH---------HHHH---HTSEEEESSEEEEEEEEETTEEE
T ss_pred CCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCH-HHHHHHH---------HHhh---cCceEEEcCcCHHHhccCCCceE
Confidence 999999999999999999999998865433221 1111110 0000 125777665 7777643
Q ss_pred cEEec--CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc----chhHHHH
Q psy12350 949 GVRFQ--DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT----LLFNLFD 1020 (1129)
Q Consensus 949 ~V~~~--dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~----~~~~~~e 1020 (1129)
+|.+. +| +++++|.||+|||++++.+++.. +++.+++.++ .+.. .+.++.||||++|++... .....+.
T Consensus 237 ~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~~~~~~~g~i-~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~ 313 (360)
T 3ab1_A 237 RVHLRSSDGSKWTVEADRLLILIGFKSNLGPLAR-WDLELYENAL-VVDS-HMKTSVDGLYAAGDIAYYPGKLKIIQTGL 313 (360)
T ss_dssp EEEEEETTCCEEEEECSEEEECCCBCCSCGGGGG-SSCCEETTEE-ECCT-TSBCSSTTEEECSTTEECTTCCCSHHHHH
T ss_pred EEEEEecCCCeEEEeCCEEEECCCCCCCHHHHHh-hccccccCee-eecC-CCcCCCCCEEEecCccCCCCccceeehhH
Confidence 46775 78 46899999999999999888765 6666664333 3333 234589999999998742 3457777
Q ss_pred HHHHHHHHHHc
Q psy12350 1021 LQVRLFQQLMQ 1031 (1129)
Q Consensus 1021 ~qa~~~a~~l~ 1031 (1129)
.||+.+|+.+.
T Consensus 314 ~~g~~aa~~i~ 324 (360)
T 3ab1_A 314 SEATMAVRHSL 324 (360)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888887665
No 114
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=99.78 E-value=1e-19 Score=218.68 Aligned_cols=270 Identities=13% Similarity=0.129 Sum_probs=178.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccc-----------------cC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSM-----------------YK 801 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~-----------------y~ 801 (1129)
..+++|||+|++|+++|.+|++.| .+|+|+|+++.+||+|.+. ||- |.+... |.
T Consensus 43 ~~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~---g~~----p~k~l~~~~~~~~~~~~~~~~g~~~ 113 (523)
T 1mo9_A 43 EYDAIFIGGGAAGRFGSAYLRAMG--GRQLIVDRWPFLGGSCPHN---ACV----PHHLFSDCAAELMLARTFSGQYWFP 113 (523)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSCHHHHH---SHH----HHHHHHHHHHHHHHHHHTTTSTTCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCccccc---CcC----chHHHHHHHHHHHHHhhhhhcCcHH
Confidence 457899999999999999999999 9999999998899998742 220 100000 11
Q ss_pred ccccc----------cc---c---ccc-----cccCCCCC-CCCC------------CCCCChhhhhhccCCCCCCCCCC
Q psy12350 802 SLKTN----------LP---K---DLM-----ELCGYGHK-GNAD------------KSYIGAKDVLENYNHPIYPEFKG 847 (1129)
Q Consensus 802 ~~~~~----------~~---~---~~~-----~~~~~~~~-~~~~------------~~~~~~~~v~~~~~~P~~P~i~G 847 (1129)
.+... .. . ... .-.+..+- .... ..+.....++.+|+.|..|++||
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g~~~~~d~lViATGs~p~~p~i~G 193 (523)
T 1mo9_A 114 DMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGPGTLDVPG 193 (523)
T ss_dssp CCTTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCEECCCCCSTT
T ss_pred HHHhhhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECCEEEEeCEEEECCCCCCCCCCCCC
Confidence 11000 00 0 000 00011110 0000 00111222333999999999999
Q ss_pred CCCCCCcEEeeccCC-CCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCc
Q psy12350 848 KDMCQIPILHSRDYR-TPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSE 925 (1129)
Q Consensus 848 ~~~f~g~~~hs~~~~-~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 925 (1129)
.+. ..++++.++. ......+|+|+|||+|.+|+|+|..+++.|.+|+++++.+..++. .+.+.....+.
T Consensus 194 ~~~--~~v~~~~~~~~~l~~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~------- 264 (523)
T 1mo9_A 194 VNA--KGVFDHATLVEELDYEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDR------- 264 (523)
T ss_dssp TTS--BTEEEHHHHHHHCCSCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHH-------
T ss_pred ccc--CcEeeHHHHHHHHHhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHH-------
Confidence 864 2377777666 545555699999999999999999999999999999987765442 22221111111
Q ss_pred cccccCCCCCeEEcCC--eeEEeC--Cc------EEecCCc-EeeccEEEEccCccCcCC-CCCCCCCeeecCCcccccc
Q psy12350 926 RVTSLCLPNNVVLKPD--VAELTP--TG------VRFQDGS-YEQVDIILCCTGYSNHYP-FLHESCGIKVVNKNVQPLY 993 (1129)
Q Consensus 926 ~~~~~~~~~~V~~~~~--i~~v~~--~~------V~~~dG~-~~~~D~VI~aTG~~~~~~-fl~~~~g~~~~~~~~~~ly 993 (1129)
+. ..+|+++.+ |.+++. ++ |++.||+ ++++|.||+|||++|+.+ ++.. .|+++++++...+.
T Consensus 265 --l~---~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~-~gl~~~~~G~i~Vd 338 (523)
T 1mo9_A 265 --MK---EQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSAELAKI-LGLDLGPKGEVLVN 338 (523)
T ss_dssp --HH---HTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCHHHHHH-HTCCBCTTSCBCCC
T ss_pred --HH---hCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCccCHHH-cCCccCCCCCEEEC
Confidence 10 125666654 777754 33 6778887 899999999999999977 5654 67777655433333
Q ss_pred cceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 994 KHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 994 ~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 339 ~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 378 (523)
T 1mo9_A 339 EY-LQTSVPNVYAVGDLIGGPMEMFKARKSGCYAARNVMGE 378 (523)
T ss_dssp TT-SBCSSTTEEECGGGGCSSCSHHHHHHHHHHHHHHHTTC
T ss_pred CC-CccCCCCEEEEeecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 33 34589999999999865 45688999999999999985
No 115
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=99.78 E-value=8e-20 Score=217.94 Aligned_cols=184 Identities=17% Similarity=0.192 Sum_probs=129.5
Q ss_pred hhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhh
Q psy12350 832 DVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDI 911 (1129)
Q Consensus 832 ~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~ 911 (1129)
.++.+|+.|+.|++||.+. ..+++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++.+......+.+.+
T Consensus 154 lviATGs~p~~p~i~G~~~---~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~ 229 (483)
T 3dgh_A 154 FVIAVGGRPRYPDIPGAVE---YGITSDDLFSLDR-EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQM 229 (483)
T ss_dssp EEECCCEEECCCSSTTHHH---HCBCHHHHTTCSS-CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHH
T ss_pred EEEeCCCCcCCCCCCCccc---ccCcHHHHhhhhh-cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHH
Confidence 3444999999999999864 2345555544333 47899999999999999999999999999998743222222222
Q ss_pred hccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--Cc---EEecCCc-----EeeccEEEEccCccCcCCCCC-C
Q psy12350 912 ATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG---VRFQDGS-----YEQVDIILCCTGYSNHYPFLH-E 978 (1129)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~---V~~~dG~-----~~~~D~VI~aTG~~~~~~fl~-~ 978 (1129)
.....+.+. ..+|+++.+ +.+++. ++ |++.+|+ ++++|.||+|||++|+.+++. +
T Consensus 230 ~~~l~~~l~------------~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~ 297 (483)
T 3dgh_A 230 AELVAASME------------ERGIPFLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLP 297 (483)
T ss_dssp HHHHHHHHH------------HTTCCEEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGG
T ss_pred HHHHHHHHH------------hCCCEEEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcCcCCch
Confidence 222111111 114555544 777753 32 6776664 689999999999999988774 4
Q ss_pred CCCeeecCCcccccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHcCC
Q psy12350 979 SCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 979 ~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
..|+++++ +...+..+ +.++.||||++|++.. ....+.+..||+.+|+.+.|.
T Consensus 298 ~~gl~~~~-G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (483)
T 3dgh_A 298 NAGVTVQK-DKIPVDSQ-EATNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLYGG 352 (483)
T ss_dssp GTTCCCBT-TBBCCCTT-CBCSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred hcCccccC-CEEEECcC-CccCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 47888877 43344433 3568999999999863 345688999999999999875
No 116
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=99.78 E-value=9e-20 Score=213.01 Aligned_cols=281 Identities=15% Similarity=0.149 Sum_probs=171.1
Q ss_pred ceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
++|+|||||+|||+||..|++ .+.+++|+|+|+++.+++... ++....
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~-------------------------~~~~~~------ 50 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPA-------------------------LPHVAI------ 50 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCS-------------------------SCCCCS------
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccc-------------------------hhhccc------
Confidence 589999999999999999998 445699999999874321100 000000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.....+++..++.+.+++.++ .++.+ +|+.++. +.+.+.+.+ .........|| +||+||
T Consensus 51 -------~~~~~~~~~~~~~~~~~~~gv--~~~~~-~v~~i~~-----~~~~V~~~~-g~~~~~~~~~d-----~lViAt 109 (409)
T 3h8l_A 51 -------GVRDVDELKVDLSEALPEKGI--QFQEG-TVEKIDA-----KSSMVYYTK-PDGSMAEEEYD-----YVIVGI 109 (409)
T ss_dssp -------SCCCCCCEEEEHHHHTGGGTC--EEEEC-EEEEEET-----TTTEEEEEC-TTSCEEEEECS-----EEEECC
T ss_pred -------CCcCHHHHHHHHHHHHhhCCe--EEEEe-eEEEEeC-----CCCEEEEcc-CCcccceeeCC-----EEEECC
Confidence 001111233445556666666 56655 8888875 334455443 11222346799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| ..|+.|++||..+....- .+ .+.+....+.+... .
T Consensus 110 G--~~~~~~~ipG~~~~~~~~----~~-------------------------------------~~~~~~~~~~l~~~-~ 145 (409)
T 3h8l_A 110 G--AHLATELVKGWDKYGYSV----CE-------------------------------------PEFATKLREKLESF-Q 145 (409)
T ss_dssp C--CEECGGGSBTHHHHCEES----SS-------------------------------------TTHHHHHHHHHHHC-C
T ss_pred C--CCcCccCCCChhhcCcCc----CC-------------------------------------HHHHHHHHHHHHHh-c
Confidence 9 688888887743210000 00 00000011111111 1
Q ss_pred cceeEeeceeeeecCCCCCCC-------------------------Ccccchhh----hcccc----cEEEEccccCCcc
Q psy12350 249 DKYKIINEKAFVRDPGAANGP-------------------------SGLDITHD----ISTEA----TTVFLSHHSEHVK 295 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~-------------------------sg~e~A~~----l~~~~----~~V~lv~r~~~~~ 295 (1129)
++++| ||+|. .|+|+|.. +.+.| .+|+++++.+ .+
T Consensus 146 ~~~vV-----------iG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~-~l 213 (409)
T 3h8l_A 146 GGNIA-----------IGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGE-YL 213 (409)
T ss_dssp SEEEE-----------EEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSS-SS
T ss_pred CCeEE-----------EEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCc-cc
Confidence 33444 68882 25677754 44566 4899999987 33
Q ss_pred cccCC--------------CCeEEcCCceEEcCCceEEcCCCEeecCEEEEcccccccCCCCCCC-CCeEeecCcccccc
Q psy12350 296 KLRFP--------------NNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHES-CGIKVVNKNVQPLY 360 (1129)
Q Consensus 296 ~~~~~--------------~~i~~~~~v~~~~~~~v~~~dg~~~~~D~VI~atG~~~~~~~l~~~-~~~~~~~~~~~~l~ 360 (1129)
+...+ -++..+..|+++++++|+++||+++++|.||+|+|++++ +++.+. .++ .+++..+...
T Consensus 214 ~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd 291 (409)
T 3h8l_A 214 SDLSPNSRKAVASIYNQLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTD 291 (409)
T ss_dssp TTBCHHHHHHHHHHHHHHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBB
T ss_pred cccCHHHHHHHHHHHHHCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeC
Confidence 32111 144556789999999999999999999999999999987 555532 122 2333434444
Q ss_pred cccccCCCCCeEEecccccc--c-c-cccccceeeehhhccccc
Q psy12350 361 KHLINIEHPSMCIIGYTYRY--P-F-LHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 361 ~~~~~~~~p~l~~~G~~~~~--~-~-~~~~~~~~~~a~~~~~~~ 400 (1129)
..+..++.|++|++|..... | . .....|++.+|+++.+.+
T Consensus 292 ~~~~~~~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l 335 (409)
T 3h8l_A 292 LNMVSIKYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRL 335 (409)
T ss_dssp TTSBBSSCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHT
T ss_pred cccccCCCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 44444588999999987642 1 1 223488999999998876
No 117
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}
Probab=99.77 E-value=6.7e-20 Score=217.37 Aligned_cols=265 Identities=17% Similarity=0.204 Sum_probs=172.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc--------------------c
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS--------------------M 799 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~--------------------~ 799 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||++.+||+|.+ .||. |.+.. .
T Consensus 5 ~DVvVIGgG~aGl~aA~~l~~~G--~~V~liEk~~~~GG~~~~---~gci----Psk~l~~~a~~~~~~~~~~~~~~~~~ 75 (466)
T 3l8k_A 5 YDVVVIGAGGAGYHGAFRLAKAK--YNVLMADPKGELGGNCLY---SGCV----PSKTVREVIQTAWRLTNIANVKIPLD 75 (466)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECTTSSSSHHHHH---HSHH----HHHHHHHHHHHHHHHHHHHCSCCCCC
T ss_pred ceEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCcccc---cCCC----chHHHHHHHHHHHHHHhcccCCCCcC
Confidence 47899999999999999999999 999999999999999984 2331 10000 0
Q ss_pred cCcc-------------------cccccccc----ccccC---CCCCCCCCCC--CCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 800 YKSL-------------------KTNLPKDL----MELCG---YGHKGNADKS--YIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 800 y~~~-------------------~~~~~~~~----~~~~~---~~~~~~~~~~--~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
|..+ .....-.+ ..+.+ +......... +.....++.+|+.|+.|++||.+
T Consensus 76 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~-- 153 (466)
T 3l8k_A 76 FSTVQDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVE-- 153 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGG--
T ss_pred HHHHHHHHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCcc--
Confidence 0000 00000000 00000 0000000011 22223344599999999999986
Q ss_pred CCcEEeeccCCC---CCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCcc
Q psy12350 852 QIPILHSRDYRT---PEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSER 926 (1129)
Q Consensus 852 ~g~~~hs~~~~~---~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 926 (1129)
.++++.++.. .....+|+|+|||+|.+|+|+|..|++.|.+|+++.+.+..++. .+.+.....+.
T Consensus 154 --~~~t~~~~~~~~~~l~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~-------- 223 (466)
T 3l8k_A 154 --YCLTSDDIFGYKTSFRKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSI-------- 223 (466)
T ss_dssp --GSBCHHHHHSTTCSCCSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHH--------
T ss_pred --ceEeHHHHHHHHHHHhhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhc--------
Confidence 2555554431 12224799999999999999999999999999999987765542 22222221110
Q ss_pred ccccCCCCCeEEcCCeeEEeC---Cc--EEec--CCc--EeeccEEEEccCccCcCCCC-CCCCCeeecCCcccccccce
Q psy12350 927 VTSLCLPNNVVLKPDVAELTP---TG--VRFQ--DGS--YEQVDIILCCTGYSNHYPFL-HESCGIKVVNKNVQPLYKHT 996 (1129)
Q Consensus 927 ~~~~~~~~~V~~~~~i~~v~~---~~--V~~~--dG~--~~~~D~VI~aTG~~~~~~fl-~~~~g~~~~~~~~~~ly~~~ 996 (1129)
+ .-++.....|.+++. ++ |.+. ||+ ++++|.||+|||++|+.+ | -+..|+++++++ ..+.. .
T Consensus 224 -l----~v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~-l~l~~~gl~~~~~G-i~vd~-~ 295 (466)
T 3l8k_A 224 -L----KLNIKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP-EGAREIGLSISKTG-IVVDE-T 295 (466)
T ss_dssp -H----CCCEECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC-TTTGGGTCCBCSSS-BCCCT-T
T ss_pred -C----EEEEEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc-cchhhcCceeCCCC-EeECC-C
Confidence 0 102222334777755 33 6676 676 789999999999999988 4 244788887766 44443 3
Q ss_pred eecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 997 INIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 997 ~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 296 ~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (466)
T 3l8k_A 296 MKTNIPNVFATGDANGLAPYYHAAVRMSIAAANNIMAN 333 (466)
T ss_dssp CBCSSTTEEECGGGTCSCCSHHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCCEEEEEecCCCCccHhHHHHHHHHHHHHHhCC
Confidence 45689999999999864 45689999999999999875
No 118
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*
Probab=99.77 E-value=7e-20 Score=216.73 Aligned_cols=270 Identities=19% Similarity=0.253 Sum_probs=172.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCccc--c
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHS--S 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~--~ 798 (1129)
.+++|||+|++|+++|++|.+.| ++|+|||++ .+||+|.+. ||-+ +|++... .
T Consensus 5 ~dVvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~~---gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (463)
T 2r9z_A 5 FDLIAIGGGSGGLAVAEKAAAFG--KRVALIESK-ALGGTCVNV---GCVPKKVMWYASHLAEAVRDAPGFGVQASGGTL 78 (463)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHH---SHHHHHHHHHHHHHHHHHHHGGGGTBCCC---C
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CcEEEEcCC-CCCCcCcCc---CchhHHHHHHHHHHHHHHhhhhhcCcccCCCCc
Confidence 46899999999999999999999 999999997 799999742 2210 0110000 0
Q ss_pred ccCcccccccc----------ccccccCCCCCC-------CC-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEE
Q psy12350 799 MYKSLKTNLPK----------DLMELCGYGHKG-------NA-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPIL 856 (1129)
Q Consensus 799 ~y~~~~~~~~~----------~~~~~~~~~~~~-------~~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~ 856 (1129)
.+..+...... ....-....+-. .+ ...+.....++.+|+.|..|++||.+ .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p~~p~i~G~~----~~~ 154 (463)
T 2r9z_A 79 DWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRPIVPRLPGAE----LGI 154 (463)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEECCCSCTTGG----GSB
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCCCCCCCCCCCcc----cee
Confidence 00000000000 000000000000 00 00011112233399999999999974 245
Q ss_pred eeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCC
Q psy12350 857 HSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNN 935 (1129)
Q Consensus 857 hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1129)
++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+
T Consensus 155 ~~~~~~~~~~-~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~---~~g 221 (463)
T 2r9z_A 155 TSDGFFALQQ-QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAEN---------MH---AQG 221 (463)
T ss_dssp CHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHH---------HH---HTT
T ss_pred cHHHHhhhhc-cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHH---------HH---HCC
Confidence 5555443333 3789999999999999999999999999999987655432 22222111111 11 125
Q ss_pred eEEcCC--eeEEeCC----cEEecCCc-EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEE
Q psy12350 936 VVLKPD--VAELTPT----GVRFQDGS-YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFIL 1007 (1129)
Q Consensus 936 V~~~~~--i~~v~~~----~V~~~dG~-~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~i 1007 (1129)
|+++.+ |.+++.+ .|++.||+ ++++|.||+|||++|+.++|. +..|+++++++...+..+ +.++.||||++
T Consensus 222 v~i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~t~~~~Iya~ 300 (463)
T 2r9z_A 222 IETHLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAY-QNTNVPGVYAL 300 (463)
T ss_dssp CEEESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTT-SBCSSTTEEEC
T ss_pred CEEEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCC-CccCCCCEEEE
Confidence 666654 7777642 47788999 899999999999999988663 335777765553334333 34689999999
Q ss_pred cccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1008 GVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1008 G~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|++... ...+.+..||+.+|..+.|.
T Consensus 301 GD~~~~~~~~~~A~~~g~~aa~~i~g~ 327 (463)
T 2r9z_A 301 GDITGRDQLTPVAIAAGRRLAERLFDG 327 (463)
T ss_dssp GGGGTSCCCHHHHHHHHHHHHHHHHSC
T ss_pred eecCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999754 45689999999999999874
No 119
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*
Probab=99.77 E-value=1.6e-19 Score=215.51 Aligned_cols=276 Identities=16% Similarity=0.154 Sum_probs=172.1
Q ss_pred cCccccccCCchhhHHHHHHhhC-CCcceEEEcccCCcCcccccCC-CCCCCCCCCCccccccCccccccccccccc-cC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAG-NGFTCTTFEQADNIGGTWLYTE-HIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CG 816 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g-~~~~v~v~E~~~~~GG~w~~~~-~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~ 816 (1129)
-+++|||+|++|+++|..|++.| +..+|+|||+++.++..+..-. +.+.. +.....+.........+.-..+ ..
T Consensus 36 ~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~gv~v~~~ 112 (490)
T 2bc0_A 36 SKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFLGAGMALWIGEQ---IAGPEGLFYSDKEELESLGAKVYME 112 (490)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSCCSBCGGGHHHHHTTS---SSCSGGGBSCCHHHHHHTTCEEETT
T ss_pred CcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCCCCccccccchhhcCc---cCCHHHhhhcCHHHHHhCCCEEEeC
Confidence 57899999999999999999986 6689999999887664332000 00000 0000000000000000000000 00
Q ss_pred CC---CCC-CC---------CCCCCChhhhhhccCCCCCCCCCCCC------CCCC---cEEeeccCCCCC-------CC
Q psy12350 817 YG---HKG-NA---------DKSYIGAKDVLENYNHPIYPEFKGKD------MCQI---PILHSRDYRTPE-------PF 867 (1129)
Q Consensus 817 ~~---~~~-~~---------~~~~~~~~~v~~~~~~P~~P~i~G~~------~f~g---~~~hs~~~~~~~-------~~ 867 (1129)
-. +.. .. ...+....-++.+|+.|+.|++||.+ +|.+ .++++..+.+.. +.
T Consensus 113 ~~v~~i~~~~~~v~v~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~~~~f~~~~~~v~~~~~~~~~~~~~~~~~~~ 192 (490)
T 2bc0_A 113 SPVQSIDYDAKTVTALVDGKNHVETYDKLIFATGSQPILPPIKGAEIKEGSLEFEATLENLQFVKLYQNSADVIAKLENK 192 (490)
T ss_dssp CCEEEEETTTTEEEEEETTEEEEEECSEEEECCCEEECCCSCBTCCBCTTCTTCCBSSTTEEECSSHHHHHHHHHHTTST
T ss_pred CEEEEEECCCCEEEEEeCCcEEEEECCEEEECCCCCcCCCCCCCccccccccccccccCCEEEeCCHHHHHHHHHHhhhc
Confidence 00 000 00 00111222333499999999999987 4532 467655443321 14
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
.+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+. +. ..+|+++.+ |+
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~---------l~---~~GV~i~~~~~v~ 260 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAGYYDRDLTDLMAKN---------ME---EHGIQLAFGETVK 260 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHH---------HH---TTTCEEEETCCEE
T ss_pred CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhhhHHHHHHHHHHHHH---------HH---hCCeEEEeCCEEE
Confidence 689999999999999999999999999999998876554 222222221111 11 125666543 88
Q ss_pred EEeCCc----EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc------
Q psy12350 944 ELTPTG----VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------ 1013 (1129)
Q Consensus 944 ~v~~~~----V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------ 1013 (1129)
++++++ |.+ ||+++++|.||+|||++|+.++++. . +++++++...+..+ +.++.||||++|++...
T Consensus 261 ~i~~~~~v~~v~~-~g~~i~~D~Vi~a~G~~p~~~ll~~-~-l~~~~~G~I~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g 336 (490)
T 2bc0_A 261 EVAGNGKVEKIIT-DKNEYDVDMVILAVGFRPNTTLGNG-K-IDLFRNGAFLVNKR-QETSIPGVYAIGDCATIYDNATR 336 (490)
T ss_dssp EEECSSSCCEEEE-SSCEEECSEEEECCCEEECCGGGTT-C-SCBCTTSCBCCCTT-CBCSSTTEEECGGGBCEEETTTT
T ss_pred EEEcCCcEEEEEE-CCcEEECCEEEECCCCCcChHHHHh-h-hccCCCCCEEECCC-cccCCCCEEEeeeeEEeccccCC
Confidence 886543 444 7888999999999999999887765 3 56655443333333 34589999999998752
Q ss_pred -----chhHHHHHHHHHHHHHHcCCC
Q psy12350 1014 -----LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1014 -----~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
..++.+..||+.+|..+.|..
T Consensus 337 ~~~~~~~~~~A~~qg~~aa~~i~g~~ 362 (490)
T 2bc0_A 337 DTNYIALASNAVRTGIVAAHNACGTD 362 (490)
T ss_dssp EEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred ceeecccHHHHHHHHHHHHHHhcCCC
Confidence 346899999999999998753
No 120
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=99.77 E-value=4.7e-19 Score=201.13 Aligned_cols=270 Identities=14% Similarity=0.107 Sum_probs=172.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC----CCCCCCCCCCccccccCcccc-----ccc-
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE----HIGCDQYGLPVHSSMYKSLKT-----NLP- 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~----~~g~~~~g~p~~~~~y~~~~~-----~~~- 808 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+. .+||.|.... +++.. +++.. ..+...+.. +..
T Consensus 14 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~~-~~gg~~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~v~~ 88 (335)
T 2a87_A 14 VRDVIVIGSGPAGYTAALYAARAQ--LAPLVFEGT-SFGGALMTTTDVENYPGFR-NGITG-PELMDEMREQALRFGADL 88 (335)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTT--CCCEEECCS-SCSCGGGSCSCBCCSTTCT-TCBCH-HHHHHHHHHHHHHTTCEE
T ss_pred cCCEEEECCCHHHHHHHHHHHhCC--CeEEEEecC-CCCCceeccchhhhcCCCC-CCCCH-HHHHHHHHHHHHHcCCEE
Confidence 347899999999999999999999 999999975 7899987542 12110 00100 000000000 000
Q ss_pred --cccccccC---CCC-CCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHH
Q psy12350 809 --KDLMELCG---YGH-KGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGL 882 (1129)
Q Consensus 809 --~~~~~~~~---~~~-~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~ 882 (1129)
........ +.. .......+.....++.+|+.|+.|++||.+.|.+..+|+..+.+.....+|+|+|||+|.+|+
T Consensus 89 ~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~ 168 (335)
T 2a87_A 89 RMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGFFFRDQDIAVIGGGDSAM 168 (335)
T ss_dssp ECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGGGGTTCEEEEECSSHHHH
T ss_pred EEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchhhcCCCEEEEECCCHHHH
Confidence 00000000 000 000000111122233389999999999987777666776544433345789999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc----EEec---
Q psy12350 883 DITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG----VRFQ--- 953 (1129)
Q Consensus 883 eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~----V~~~--- 953 (1129)
|+|..|++.+.+|+++.+.+.... ...+.. ..+. ..+|++..+ +.++++++ |.+.
T Consensus 169 e~a~~l~~~g~~V~l~~~~~~~~~-~~~~~~------------~~~~---~~gV~v~~~~~v~~i~~~~~~~~v~~~~~~ 232 (335)
T 2a87_A 169 EEATFLTRFARSVTLVHRRDEFRA-SKIMLD------------RARN---NDKIRFLTNHTVVAVDGDTTVTGLRVRDTN 232 (335)
T ss_dssp HHHHHHTTTCSEEEEECSSSSCSS-CTTHHH------------HHHH---CTTEEEECSEEEEEEECSSSCCEEEEEEET
T ss_pred HHHHHHHHhCCeEEEEEcCCcCCc-cHHHHH------------HHhc---cCCcEEEeCceeEEEecCCcEeEEEEEEcC
Confidence 999999999999999988654311 000000 0000 236777765 88887654 7775
Q ss_pred CC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHH
Q psy12350 954 DG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQL 1029 (1129)
Q Consensus 954 dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~ 1029 (1129)
+| +++++|.||+|||++|+.+++. .++.+++++...+....+.++.||||++|++... .....+..|++.+|..
T Consensus 233 ~g~~~~i~~D~vi~a~G~~p~~~~~~--~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~ 310 (335)
T 2a87_A 233 TGAETTLPVTGVFVAIGHEPRSGLVR--EAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAID 310 (335)
T ss_dssp TSCCEEECCSCEEECSCEEECCTTTB--TTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHH
T ss_pred CCceEEeecCEEEEccCCccChhHhh--cccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHH
Confidence 45 4689999999999999988886 3566665554455555557789999999998764 3456777888888776
Q ss_pred Hc
Q psy12350 1030 MQ 1031 (1129)
Q Consensus 1030 l~ 1031 (1129)
+.
T Consensus 311 i~ 312 (335)
T 2a87_A 311 AE 312 (335)
T ss_dssp HH
T ss_pred HH
Confidence 63
No 121
>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.77 E-value=3.4e-19 Score=210.64 Aligned_cols=270 Identities=17% Similarity=0.213 Sum_probs=173.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC----------------------CCCCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ----------------------YGLPVH 796 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~----------------------~g~p~~ 796 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+|+ +.+||+|... ||-+ +|++..
T Consensus 5 ~~dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~-~~~GG~~~~~---g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~ 78 (458)
T 1lvl_A 5 QTTLLIIGGGPGGYVAAIRAGQLG--IPTVLVEG-QALGGTCLNI---GCIPSKALIHVAEQFHQASRFTEPSPLGISVA 78 (458)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHT--CCEEEECS-SCTTHHHHHH---SHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CEEEEEcc-CCCCCcCCCc---CcHhHHHHHHHHHHHHHHhhcccccccCcccC
Confidence 347899999999999999999999 99999999 7899999732 2210 122110
Q ss_pred cc--ccCcccccc----------ccccccccCCCCCCC-------C-----CCCCCChhhhhhccCCCCCCC-CCCCCCC
Q psy12350 797 SS--MYKSLKTNL----------PKDLMELCGYGHKGN-------A-----DKSYIGAKDVLENYNHPIYPE-FKGKDMC 851 (1129)
Q Consensus 797 ~~--~y~~~~~~~----------~~~~~~~~~~~~~~~-------~-----~~~~~~~~~v~~~~~~P~~P~-i~G~~~f 851 (1129)
.. .++.+.... ......-.+..+-.. . ...+....-++.+|+.|+.|+ +| .+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs~p~~~~~~~-~~-- 155 (458)
T 1lvl_A 79 SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVELPMLP-LG-- 155 (458)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEECCBTTBC-CB--
T ss_pred CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCCCCCCCCCCC-cc--
Confidence 00 000000000 000000000000000 0 001112223344999998886 55 22
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
+.++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +.
T Consensus 156 -~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~- 223 (458)
T 1lvl_A 156 -GPVISSTEALAPKA-LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAES---------LK- 223 (458)
T ss_dssp -TTEECHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH---------HH-
T ss_pred -CcEecHHHHhhhhc-cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHH---------HH-
Confidence 36788877766544 4799999999999999999999999999999988766542 22222211111 10
Q ss_pred CCCCCeEEcCC--eeEEeCCcEEec--CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCC
Q psy12350 931 CLPNNVVLKPD--VAELTPTGVRFQ--DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~~~V~~~--dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
..+|+++.+ |.+++.+++.+. +| +++++|.||+|||++|+.+++. +..|+.++++ ...+..+ +.++.||
T Consensus 224 --~~gv~i~~~~~v~~i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~-~~t~~~~ 299 (458)
T 1lvl_A 224 --KLGIALHLGHSVEGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDER-CQTSMHN 299 (458)
T ss_dssp --HHTCEEETTCEEEEEETTEEEEECSSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTT-CBCSSTT
T ss_pred --HCCCEEEECCEEEEEEeCCEEEEECCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCC-CcCCCCC
Confidence 115666654 788876335544 67 5789999999999999988752 4467877665 3344443 3468999
Q ss_pred cEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1004 MFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1004 l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||++|++... ...+.+..||+.+|..+.|.
T Consensus 300 Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 330 (458)
T 1lvl_A 300 VWAIGDVAGEPMLAHRAMAQGEMVAEIIAGK 330 (458)
T ss_dssp EEECGGGGCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred EEEeeccCCCcccHHHHHHHHHHHHHHhcCC
Confidence 9999998764 35688999999999999874
No 122
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=99.77 E-value=1.6e-19 Score=215.10 Aligned_cols=183 Identities=15% Similarity=0.192 Sum_probs=134.7
Q ss_pred hhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhc---CCEEEEEecCCCCccc-h
Q psy12350 833 VLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATT---GKQAVVVGSGQSGLDI-T 908 (1129)
Q Consensus 833 v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~---~~~V~vv~~~~~~~~~-~ 908 (1129)
++.+|+.|+.|++||.+ .++++.++..... .+|+|+|||+|.+|+|+|..|++. |.+||++++.+..++. .
T Consensus 160 ViATGs~p~~p~i~G~~----~~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d 234 (495)
T 2wpf_A 160 LLATGSWPQMPAIPGIE----HCISSNEAFYLPE-PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFD 234 (495)
T ss_dssp EECCCEEECCCCCTTGG----GCEEHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSC
T ss_pred EEeCCCCcCCCCCCCcc----ccccHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccC
Confidence 44599999999999974 3567777665444 379999999999999999999999 9999999997765542 2
Q ss_pred hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCCcEeeccEEEEccCccCcCCCC-CCCC
Q psy12350 909 LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDGSYEQVDIILCCTGYSNHYPFL-HESC 980 (1129)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG~~~~~D~VI~aTG~~~~~~fl-~~~~ 980 (1129)
+.+.....+.+ . ..+|+++.+ |.+++.+ .|++.||+++++|.||+|+|++|+.++| -+..
T Consensus 235 ~~~~~~l~~~l---------~---~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~ 302 (495)
T 2wpf_A 235 ETIREEVTKQL---------T---ANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTNDLQLGNV 302 (495)
T ss_dssp HHHHHHHHHHH---------H---HTTCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCGGGTGGGT
T ss_pred HHHHHHHHHHH---------H---hCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCcccccccchhhc
Confidence 22222111111 0 125666543 7787642 3778899999999999999999998865 3457
Q ss_pred CeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 981 GIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 981 g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|+++++++...+..+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 303 gl~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 355 (495)
T 2wpf_A 303 GVKLTPKGGVQVDEF-SRTNVPNIYAIGDITDRLMLTPVAINEGAALVDTVFGN 355 (495)
T ss_dssp TCCBCTTSSBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CccCCCCCCEEECCC-CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 888875543334333 34589999999999764 45689999999999999874
No 123
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Probab=99.77 E-value=1.7e-19 Score=216.29 Aligned_cols=272 Identities=17% Similarity=0.208 Sum_probs=167.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC--------CcCcccccCCCCCCCC-------------------CC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD--------NIGGTWLYTEHIGCDQ-------------------YG 792 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~--------~~GG~w~~~~~~g~~~-------------------~g 792 (1129)
.+++|||+|++|+.+|..|.+.| .+|+|+|+++ .+||+|... ||.+ +|
T Consensus 33 ~DVvVIGgGpaGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~---GciPsk~l~~~~~~~~~~~~~~~~g 107 (519)
T 3qfa_A 33 YDLIIIGGGSGGLAAAKEAAQYG--KKVMVLDFVTPTPLGTRWGLGGTCVNV---GCIPKKLMHQAALLGQALQDSRNYG 107 (519)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTCCCCCTTCHHHHH---SHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeccCccccccCCCcccccCCc---CccchHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999 9999999965 799999743 3311 11
Q ss_pred CCcccc---ccCcccccccc----------ccccccCCC---------------CCCCCC--CCCCChhhhhhccCCCCC
Q psy12350 793 LPVHSS---MYKSLKTNLPK----------DLMELCGYG---------------HKGNAD--KSYIGAKDVLENYNHPIY 842 (1129)
Q Consensus 793 ~p~~~~---~y~~~~~~~~~----------~~~~~~~~~---------------~~~~~~--~~~~~~~~v~~~~~~P~~ 842 (1129)
++.... .|..+...... ....-.... ...... ..+....-++.+|+.|++
T Consensus 108 ~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p~~ 187 (519)
T 3qfa_A 108 WKVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERPRY 187 (519)
T ss_dssp BCCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence 110000 00000000000 000000000 000000 012223334449999999
Q ss_pred CCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEec
Q psy12350 843 PEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSH 922 (1129)
Q Consensus 843 P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~ 922 (1129)
|++||.+. .++++.++.+... .+++|+|||+|.+|+|+|..|++.|.+||++.+......+.+.+.....+.+.
T Consensus 188 p~i~G~~~---~~~t~~~~~~l~~-~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~-- 261 (519)
T 3qfa_A 188 LGIPGDKE---YCISSDDLFSLPY-CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHME-- 261 (519)
T ss_dssp CCCTTHHH---HCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHH--
T ss_pred CCCCCccC---ceEcHHHHhhhhh-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHH--
Confidence 99999764 3455655554433 36789999999999999999999999999998753222222222222211111
Q ss_pred CCccccccCCCCCeEEcCC-----eeEEeC---Cc--EE--ecCCc---EeeccEEEEccCccCcCCCCC-CCCCeeec-
Q psy12350 923 HSERVTSLCLPNNVVLKPD-----VAELTP---TG--VR--FQDGS---YEQVDIILCCTGYSNHYPFLH-ESCGIKVV- 985 (1129)
Q Consensus 923 ~~~~~~~~~~~~~V~~~~~-----i~~v~~---~~--V~--~~dG~---~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~- 985 (1129)
..+|++..+ |.++.+ +. +. ..+|. ++++|.||+|||++|+.++|. +..|++++
T Consensus 262 ----------~~GV~v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~ 331 (519)
T 3qfa_A 262 ----------EHGIKFIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINE 331 (519)
T ss_dssp ----------HTTCEEEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCT
T ss_pred ----------HCCCEEEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcC
Confidence 125665544 333332 22 22 24563 468999999999999988753 44788886
Q ss_pred CCcccccccceeecCCCCcEEEcccc-c-cchhHHHHHHHHHHHHHHcCC
Q psy12350 986 NKNVQPLYKHTINIEHPTMFILGVPR-H-TLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 986 ~~~~~~ly~~~~~~~~p~l~~iG~~~-~-~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+++...+..+ +.++.||||++|++. . ....+.+..||+.+|+.+.|.
T Consensus 332 ~~G~I~Vd~~-~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~g~ 380 (519)
T 3qfa_A 332 KTGKIPVTDE-EQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLYAG 380 (519)
T ss_dssp TTCCBCCCTT-SBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCeEeeCCC-CccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 3443334333 346899999999987 3 345688999999999999864
No 124
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Probab=99.77 E-value=1.6e-19 Score=210.15 Aligned_cols=274 Identities=13% Similarity=0.060 Sum_probs=168.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcccc---ccCcccccc--ccccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSS---MYKSLKTNL--PKDLMEL 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~---~y~~~~~~~--~~~~~~~ 814 (1129)
.+++|||+|++|+++|..|++.|...+|+++|+++.++.... ..+..-..+...... .+....... .......
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i 85 (408)
T 2gqw_A 8 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRP--PLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSF 85 (408)
T ss_dssp SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSG--GGGTHHHHHCCGGGSBCCCTTSCSCEEEETCCEEEE
T ss_pred CcEEEECChHHHHHHHHHHHccCCCCeEEEEECCCCCcccCC--CCCHHHhCCCchhhhhHHHHHHCCCEEEcCCEEEEE
Confidence 478999999999999999999994446999999876541100 000000000000000 000000000 0000000
Q ss_pred c--CCCCCCCCCCCCCChhhhhhccCCCCCCCC-CCCCCCCCcEEeeccCCCC-----CCCCCCeEEEEcCCccHHHHHH
Q psy12350 815 C--GYGHKGNADKSYIGAKDVLENYNHPIYPEF-KGKDMCQIPILHSRDYRTP-----EPFAGKQAVVVGSGQSGLDITL 886 (1129)
Q Consensus 815 ~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i-~G~~~f~g~~~hs~~~~~~-----~~~~gk~VvVVG~G~Sg~eiA~ 886 (1129)
. ...........+....-++.+|+.|+.|++ ||.+ . .+++.....+. .-..+|+|+|||+|.+|+|+|.
T Consensus 86 ~~~~~~v~~~~g~~~~~d~lviAtG~~~~~~~i~~G~~--~-~v~~~~~~~~~~~l~~~~~~~~~vvViGgG~~g~E~A~ 162 (408)
T 2gqw_A 86 DPQAHTVALSDGRTLPYGTLVLATGAAPRALPTLQGAT--M-PVHTLRTLEDARRIQAGLRPQSRLLIVGGGVIGLELAA 162 (408)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTCS--S-CEEECCSHHHHHHHHTTCCTTCEEEEECCSHHHHHHHH
T ss_pred ECCCCEEEECCCCEEECCEEEECCCCCCCCCCccCCCC--C-cEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHH
Confidence 0 000000001112222334449999999999 9986 2 35544333221 1124899999999999999999
Q ss_pred HHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCCcEEecCCcEeeccE
Q psy12350 887 DIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPTGVRFQDGSYEQVDI 962 (1129)
Q Consensus 887 ~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~~V~~~dG~~~~~D~ 962 (1129)
.|++.|.+|+++++.+..++ +.+.+.....+.+. ..+|+++. .|.+++++.|++.||+++++|.
T Consensus 163 ~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~v~~~~g~~i~~D~ 230 (408)
T 2gqw_A 163 TARTAGVHVSLVETQPRLMSRAAPATLADFVARYHA------------AQGVDLRFERSVTGSVDGVVLLDDGTRIAADM 230 (408)
T ss_dssp HHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHH------------HTTCEEEESCCEEEEETTEEEETTSCEEECSE
T ss_pred HHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHH------------HcCcEEEeCCEEEEEECCEEEECCCCEEEcCE
Confidence 99999999999998876554 22222222211111 12566654 4888875579999999999999
Q ss_pred EEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-----------hhHHHHHHHHHHHHHHc
Q psy12350 963 ILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-----------LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 963 VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-----------~~~~~e~qa~~~a~~l~ 1031 (1129)
||+|+|++|+.+++.. .|+++++ + ..+..+ +.++.|+||++|++.... .+..+..||+.+|+.+.
T Consensus 231 vi~a~G~~p~~~l~~~-~gl~~~~-g-i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~ 306 (408)
T 2gqw_A 231 VVVGIGVLANDALARA-AGLACDD-G-IFVDAY-GRTTCPDVYALGDVTRQRNPLSGRFERIETWSNAQNQGIAVARHLV 306 (408)
T ss_dssp EEECSCEEECCHHHHH-HTCCBSS-S-EECCTT-CBCSSTTEEECGGGEEEEETTTTEEECCCCHHHHHHHHHHHHHHHH
T ss_pred EEECcCCCccHHHHHh-CCCCCCC-C-EEECCC-CccCCCCEEEEEEEEEecCccCCceeeccHHHHHHHHHHHHHHHhc
Confidence 9999999999877654 5666653 3 233333 345899999999987532 45789999999999998
Q ss_pred CCC
Q psy12350 1032 GHI 1034 (1129)
Q Consensus 1032 g~~ 1034 (1129)
|..
T Consensus 307 g~~ 309 (408)
T 2gqw_A 307 DPT 309 (408)
T ss_dssp CTT
T ss_pred CCC
Confidence 864
No 125
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-19 Score=215.77 Aligned_cols=270 Identities=19% Similarity=0.280 Sum_probs=171.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCc-----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPV----- 795 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~----- 795 (1129)
-+++|||+|++|+++|..|.+.| .+|+|||++ .+||+|... ||- .+|+..
T Consensus 12 ~dVvVIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~n~---gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 85 (479)
T 2hqm_A 12 YDYLVIGGGSGGVASARRAASYG--AKTLLVEAK-ALGGTCVNV---GCVPKKVMWYASDLATRVSHANEYGLYQNLPLD 85 (479)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTS--CCEEEEESS-CTTHHHHHH---SHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCS
T ss_pred CCEEEEcCCHHHHHHHHHHHHCC--CcEEEEeCC-CcCCcCccc---CcHHHHHHHHHHHHHHHHHhHHhcCcccccccc
Confidence 47899999999999999999999 999999997 799999731 220 011110
Q ss_pred c---ccccCcccc------------------cccccc----ccccC---CCCCCCCCC--CCCChhhhhhccCCCCCC-C
Q psy12350 796 H---SSMYKSLKT------------------NLPKDL----MELCG---YGHKGNADK--SYIGAKDVLENYNHPIYP-E 844 (1129)
Q Consensus 796 ~---~~~y~~~~~------------------~~~~~~----~~~~~---~~~~~~~~~--~~~~~~~v~~~~~~P~~P-~ 844 (1129)
. ..-|..+.. ...-.+ ..+.+ +........ .+.....++.+|+.|..| +
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~~ 165 (479)
T 2hqm_A 86 KEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKAIFPEN 165 (479)
T ss_dssp GGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEECCCTT
T ss_pred cccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCCCCCCC
Confidence 0 000000000 000000 00000 000000000 111222334499999999 9
Q ss_pred CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecC
Q psy12350 845 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHH 923 (1129)
Q Consensus 845 i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~ 923 (1129)
+||.+. ++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+.+.
T Consensus 166 i~g~~~----~~~~~~~~~l~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~--- 237 (479)
T 2hqm_A 166 IPGFEL----GTDSDGFFRLEE-QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDHYV--- 237 (479)
T ss_dssp STTGGG----SBCHHHHHHCSS-CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHH---
T ss_pred CCCccc----ccchHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHHHH---
Confidence 999742 345544433222 4799999999999999999999999999999987765432 2222221111110
Q ss_pred CccccccCCCCCeEEcCC--eeEEeCC------cEEecCC-cEeeccEEEEccCccCcCCCCCCCCCeeecCCccccccc
Q psy12350 924 SERVTSLCLPNNVVLKPD--VAELTPT------GVRFQDG-SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYK 994 (1129)
Q Consensus 924 ~~~~~~~~~~~~V~~~~~--i~~v~~~------~V~~~dG-~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~ 994 (1129)
..+|++..+ |.+++.+ .|++.|| +++++|.||+|||++|+..+.-+..|+++++++...+..
T Consensus 238 ---------~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~ 308 (479)
T 2hqm_A 238 ---------KEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADE 308 (479)
T ss_dssp ---------HHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCT
T ss_pred ---------hCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECC
Confidence 115666554 7777542 3778899 789999999999999998431244778887655443433
Q ss_pred ceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 995 HTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 995 ~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 309 ~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 347 (479)
T 2hqm_A 309 Y-QNTNVPNIYSLGDVVGKVELTPVAIAAGRKLSNRLFGP 347 (479)
T ss_dssp T-CBCSSTTEEECGGGTTSSCCHHHHHHHHHHHHHHHHSC
T ss_pred C-CccCCCCEEEEEecCCCcccHHHHHHHHHHHHHHhcCC
Confidence 3 35689999999999654 46789999999999998864
No 126
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=99.77 E-value=1.1e-19 Score=216.72 Aligned_cols=272 Identities=17% Similarity=0.196 Sum_probs=169.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcc--------cCCcCcccccCCCCCCCC-------------------CC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQ--------ADNIGGTWLYTEHIGCDQ-------------------YG 792 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~--------~~~~GG~w~~~~~~g~~~-------------------~g 792 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+ ...+||+|... ||.+ +|
T Consensus 7 ~DvvVIG~G~aGl~aA~~la~~G--~~V~liEk~~~~~~~~~~~~GGtc~~~---gciPsk~l~~~~~~~~~~~~~~~~g 81 (488)
T 3dgz_A 7 FDLLVIGGGSGGLACAKEAAQLG--KKVAVADYVEPSPRGTKWGLGGTCVNV---GCIPKKLMHQAALLGGMIRDAHHYG 81 (488)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECCCCCCTTSCCCCTTCHHHHH---SHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEEecccccccccCCcCCeeccc---CCcccHHHHHHHHHHHHHHHHHhcC
Confidence 47899999999999999999999 99999998 56799999742 3310 11
Q ss_pred CCccc---cccCccccccc---c-------ccccccCCCC--------CCC-------CC--CCCCChhhhhhccCCCCC
Q psy12350 793 LPVHS---SMYKSLKTNLP---K-------DLMELCGYGH--------KGN-------AD--KSYIGAKDVLENYNHPIY 842 (1129)
Q Consensus 793 ~p~~~---~~y~~~~~~~~---~-------~~~~~~~~~~--------~~~-------~~--~~~~~~~~v~~~~~~P~~ 842 (1129)
++... .-|..+..... . ....-....+ ... .. ..+....-++.+|+.|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~ 161 (488)
T 3dgz_A 82 WEVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRPRY 161 (488)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEECC
T ss_pred cccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCCCC
Confidence 11000 00000000000 0 0000000000 000 00 011122233449999999
Q ss_pred CC-CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEe
Q psy12350 843 PE-FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLS 921 (1129)
Q Consensus 843 P~-i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~ 921 (1129)
|+ +||.+. ..+++.++..... .+++|+|||+|.+|+|+|..|++.|.+|+++.+......+.+.+.....+.+.
T Consensus 162 p~~i~G~~~---~~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~- 236 (488)
T 3dgz_A 162 PTQVKGALE---YGITSDDIFWLKE-SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHME- 236 (488)
T ss_dssp CSSCBTHHH---HCBCHHHHTTCSS-CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHH-
T ss_pred CCCCCCccc---ccCcHHHHHhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHHH-
Confidence 99 999754 2345555554433 46889999999999999999999999999998754222222222222211111
Q ss_pred cCCccccccCCCCCeEEcCC--eeEEeC---Cc--EEecC---Cc--EeeccEEEEccCccCcCCCCC-CCCCeeec-CC
Q psy12350 922 HHSERVTSLCLPNNVVLKPD--VAELTP---TG--VRFQD---GS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVV-NK 987 (1129)
Q Consensus 922 ~~~~~~~~~~~~~~V~~~~~--i~~v~~---~~--V~~~d---G~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~-~~ 987 (1129)
..+|+++.+ +.+++. +. |++.+ |+ ++++|.||+|||++|+.++|. +..|+.++ ++
T Consensus 237 -----------~~gv~~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~ 305 (488)
T 3dgz_A 237 -----------SHGTQFLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKN 305 (488)
T ss_dssp -----------HTTCEEEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSS
T ss_pred -----------HCCCEEEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCC
Confidence 125666554 666643 22 55554 55 368999999999999988753 34678887 45
Q ss_pred cccccccceeecCCCCcEEEccccc--cchhHHHHHHHHHHHHHHcCC
Q psy12350 988 NVQPLYKHTINIEHPTMFILGVPRH--TLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 988 ~~~~ly~~~~~~~~p~l~~iG~~~~--~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+...+..+ +.++.||||++|++.. ....+.+..||+.+|..+.|.
T Consensus 306 G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g~ 352 (488)
T 3dgz_A 306 QKIIVDAQ-EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFGK 352 (488)
T ss_dssp CCBCCCTT-SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHSC
T ss_pred CeEeECCC-CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcCC
Confidence 44334333 3468999999999863 245688999999999999875
No 127
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=99.77 E-value=1.7e-19 Score=214.93 Aligned_cols=188 Identities=15% Similarity=0.162 Sum_probs=133.5
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hh
Q psy12350 831 KDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TL 909 (1129)
Q Consensus 831 ~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~ 909 (1129)
..++.+|+.|..|+.++.+. ..++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+
T Consensus 145 ~lvlAtG~~p~~~~~~~~~~--~~v~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~ 221 (476)
T 3lad_A 145 NVILASGSKPVEIPPAPVDQ--DVIVDSTGALDFQN-VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDE 221 (476)
T ss_dssp CEEECCCEEECCCTTSCCCS--SSEEEHHHHTSCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCH
T ss_pred EEEEcCCCCCCCCCCCCCCc--ccEEechhhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCH
Confidence 34455999998877666432 35777776655443 4799999999999999999999999999999987765542 22
Q ss_pred hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC--c--EEecCC---cEeeccEEEEccCccCcCCCC-CCC
Q psy12350 910 DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT--G--VRFQDG---SYEQVDIILCCTGYSNHYPFL-HES 979 (1129)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~--~--V~~~dG---~~~~~D~VI~aTG~~~~~~fl-~~~ 979 (1129)
.+.....+.+ . ..+|+++.+ +.+++.+ + +.+.++ +++++|.||+|||++|+.++| .+.
T Consensus 222 ~~~~~l~~~l---------~---~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~l~~~~ 289 (476)
T 3lad_A 222 QVAKEAQKIL---------T---KQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTDLLAAD 289 (476)
T ss_dssp HHHHHHHHHH---------H---HTTEEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTTCCSSC
T ss_pred HHHHHHHHHH---------H---hCCCEEEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCCCCccc
Confidence 2222111111 0 125666644 7777632 2 666655 578999999999999998765 445
Q ss_pred CCeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 980 CGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 980 ~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
.|+.+++++...+... +.++.||||++|++... ...+.+..||+.+|+.+.|+.
T Consensus 290 ~g~~~~~~G~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~~ 344 (476)
T 3lad_A 290 SGVTLDERGFIYVDDY-CATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHK 344 (476)
T ss_dssp CSCCBCTTSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHCC
T ss_pred cCccccCCCCEeeCCC-cccCCCCEEEEEccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 7888876654444333 34689999999999854 456899999999999998753
No 128
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=99.77 E-value=8.3e-20 Score=217.66 Aligned_cols=271 Identities=18% Similarity=0.223 Sum_probs=171.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCccc--c
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPVHS--S 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~~~--~ 798 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|++ .+||+|.+. ||- .+|++... .
T Consensus 9 ~DvvVIGgG~aGl~aA~~la~~G--~~V~liE~~-~~GGtc~~~---gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 82 (492)
T 3ic9_A 9 VDVAIIGTGTAGMGAYRAAKKHT--DKVVLIEGG-AYGTTCARV---GCMPSKLLIAAADASYHASQTDLFGIQVDRISV 82 (492)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTC--SCEEEEESS-CSSCHHHHH---SHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCC-CCCCccccc---ChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCcc
Confidence 47899999999999999999999 999999996 599998631 220 01111000 0
Q ss_pred ccCcccccc-----------ccccccccC-------------CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCc
Q psy12350 799 MYKSLKTNL-----------PKDLMELCG-------------YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIP 854 (1129)
Q Consensus 799 ~y~~~~~~~-----------~~~~~~~~~-------------~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~ 854 (1129)
.+..+.... ......... ..........+.....++.+|+.|++|+++|... ..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~~--~~ 160 (492)
T 3ic9_A 83 NGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYPEFLAAAG--SR 160 (492)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEECCCCHHHHTTG--GG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCCcCCCCCCccC--Cc
Confidence 000000000 000000000 0000000011111223334999999998776432 35
Q ss_pred EEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCC
Q psy12350 855 ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLP 933 (1129)
Q Consensus 855 ~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1129)
++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+ .+.
T Consensus 161 v~t~~~~~~~~~-~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~-------------~l~ 226 (492)
T 3ic9_A 161 LLTNDNLFELND-LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEK-------------TFN 226 (492)
T ss_dssp EECHHHHTTCSS-CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHH-------------HHH
T ss_pred EEcHHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHH-------------HHh
Confidence 777766655443 3899999999999999999999999999999987765533 2222211111 011
Q ss_pred CCeEEcCC--eeEEeC--Cc--EEec--CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCC
Q psy12350 934 NNVVLKPD--VAELTP--TG--VRFQ--DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 934 ~~V~~~~~--i~~v~~--~~--V~~~--dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
.+|+++.+ +++++. ++ +.+. || +++++|.||+|||++|+.++|. +..|+++++++...+....+.++.|
T Consensus 227 ~~V~i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~ 306 (492)
T 3ic9_A 227 EEFYFDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVD 306 (492)
T ss_dssp TTSEEETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSST
T ss_pred hCcEEEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCC
Confidence 12555544 777754 23 4554 78 5789999999999999998853 4478888766654333133456899
Q ss_pred CcEEEccccccc-hhHHHHHHHHHHHHHHcC
Q psy12350 1003 TMFILGVPRHTL-LFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 1003 ~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g 1032 (1129)
|||++|++.... ..+.+..||+.+|..+.+
T Consensus 307 ~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~ 337 (492)
T 3ic9_A 307 HIFVAGDANNTLTLLHEAADDGKVAGTNAGA 337 (492)
T ss_dssp TEEECGGGGTSSCSHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCCCccHHHHHHHHHHHHHHHcC
Confidence 999999987653 457999999999999876
No 129
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=99.77 E-value=4.1e-19 Score=206.77 Aligned_cols=276 Identities=13% Similarity=0.128 Sum_probs=167.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc---ccCCCCCCCC-CCCCcc-ccccCcccccc-ccccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW---LYTEHIGCDQ-YGLPVH-SSMYKSLKTNL-PKDLMEL 814 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w---~~~~~~g~~~-~g~p~~-~~~y~~~~~~~-~~~~~~~ 814 (1129)
+++|||+|++|+++|..|++.|.+.+|+|||+++..+..- ......+... ..+... ...|....... .......
T Consensus 3 ~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~v~~i 82 (404)
T 3fg2_P 3 TVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELISDRMVSI 82 (404)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEECCCEEEE
T ss_pred CEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEEEEEEEE
Confidence 5789999999999999999999444999999988654210 0000000000 000000 00000000000 0000000
Q ss_pred c--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-----CCCCCCeEEEEcCCccHHHHHHH
Q psy12350 815 C--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-----EPFAGKQAVVVGSGQSGLDITLD 887 (1129)
Q Consensus 815 ~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-----~~~~gk~VvVVG~G~Sg~eiA~~ 887 (1129)
. ...+.......+.....++.+|+.|+.|++||.+. ..+++.....+. ....+|+|+|||+|.+|+|+|..
T Consensus 83 d~~~~~v~~~~g~~~~~d~lvlAtG~~p~~~~i~g~~~--~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~~g~e~A~~ 160 (404)
T 3fg2_P 83 DREGRKLLLASGTAIEYGHLVLATGARNRMLDVPNASL--PDVLYLRTLDESEVLRQRMPDKKHVVVIGAGFIGLEFAAT 160 (404)
T ss_dssp ETTTTEEEESSSCEEECSEEEECCCEEECCCCSTTTTS--TTEECCSSHHHHHHHHHHGGGCSEEEEECCSHHHHHHHHH
T ss_pred ECCCCEEEECCCCEEECCEEEEeeCCCccCCCCCCCCC--CcEEEECCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHH
Confidence 0 00000000111222334445999999999999763 234432222211 11258999999999999999999
Q ss_pred HHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCCcEe
Q psy12350 888 IATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDGSYE 958 (1129)
Q Consensus 888 la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG~~~ 958 (1129)
+++.+.+|+++++.+..++ +.+.+.....+.+. ..+|+++.+ |++++.+ +|+++||+++
T Consensus 161 l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i 228 (404)
T 3fg2_P 161 ARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHS------------GAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTL 228 (404)
T ss_dssp HHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHH------------HTTCEEECSCCEEEEEEETTEEEEEEETTSCEE
T ss_pred HHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHH------------hCCcEEEECCEEEEEEecCCcEEEEEeCCCCEE
Confidence 9999999999998765543 22222221111110 125666654 8888653 4889999999
Q ss_pred eccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-----------hhHHHHHHHHHHH
Q psy12350 959 QVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-----------LFNLFDLQVRLFQ 1027 (1129)
Q Consensus 959 ~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-----------~~~~~e~qa~~~a 1027 (1129)
++|.||+|||++|+.+++.. .|+..++. + .+.. .+.++.||||++|++.... .++.+..||+.+|
T Consensus 229 ~aD~Vv~a~G~~p~~~l~~~-~gl~~~~G-i-~vd~-~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~qg~~aa 304 (404)
T 3fg2_P 229 PCDLVVVGVGVIPNVEIAAA-AGLPTAAG-I-IVDQ-QLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQARCVA 304 (404)
T ss_dssp ECSEEEECCCEEECCHHHHH-TTCCBSSS-E-EECT-TSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHHHHHHH
T ss_pred EcCEEEECcCCccCHHHHHh-CCCCCCCC-E-EECC-CcccCCCCEEEeecceeecCccCCceeeehHHHHHHHHHHHHH
Confidence 99999999999999877654 66776643 2 2322 2335899999999986542 2689999999999
Q ss_pred HHHcCCC
Q psy12350 1028 QLMQGHI 1034 (1129)
Q Consensus 1028 ~~l~g~~ 1034 (1129)
+.+.|+.
T Consensus 305 ~~i~g~~ 311 (404)
T 3fg2_P 305 ARLTGDA 311 (404)
T ss_dssp HHTTTCC
T ss_pred HHhCCCC
Confidence 9999864
No 130
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=99.77 E-value=9e-20 Score=216.68 Aligned_cols=273 Identities=18% Similarity=0.219 Sum_probs=174.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCc-c--c
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPV-H--S 797 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~-~--~ 797 (1129)
+++|||+|++|+++|..|++.| ++|+|+|+++.+||+|... ||-+ +|++. . .
T Consensus 4 dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~---g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 78 (468)
T 2qae_A 4 DVVVIGGGPGGYVASIKAAQLG--MKTACVEKRGALGGTCLNV---GCIPSKALLHATHLYHDAHANFARYGLMGGEGVT 78 (468)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCE
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCcCCCc---CcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCc
Confidence 6799999999999999999999 9999999998999998732 2210 01100 0 0
Q ss_pred cccCcccccc-----------cccc-----------ccccC---CCCCCCCC--CCCCChhhhhhccCCCCCCCCCCCCC
Q psy12350 798 SMYKSLKTNL-----------PKDL-----------MELCG---YGHKGNAD--KSYIGAKDVLENYNHPIYPEFKGKDM 850 (1129)
Q Consensus 798 ~~y~~~~~~~-----------~~~~-----------~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~P~~P~i~G~~~ 850 (1129)
..+..+.... ...+ ..+.+ ........ ..+.....++.+|+.|..|+++|.+.
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g~~~ 158 (468)
T 2qae_A 79 MDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLPFDE 158 (468)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBCCCS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCCCCc
Confidence 0000000000 0000 00000 00000000 01112223344999999999999764
Q ss_pred CCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccc
Q psy12350 851 CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTS 929 (1129)
Q Consensus 851 f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 929 (1129)
..++++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+.+. .
T Consensus 159 --~~v~t~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~--------~ 227 (468)
T 2qae_A 159 --KVVLSSTGALALPR-VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALA--------K 227 (468)
T ss_dssp --SSEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHH--------H
T ss_pred --CceechHHHhhccc-CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHh--------h
Confidence 24777776655443 4799999999999999999999999999999988765542 2222211111110 0
Q ss_pred cCCCCCeEEcCC--eeEEeCCc----EEec--CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceee
Q psy12350 930 LCLPNNVVLKPD--VAELTPTG----VRFQ--DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTIN 998 (1129)
Q Consensus 930 ~~~~~~V~~~~~--i~~v~~~~----V~~~--dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~ 998 (1129)
..+|+++.+ |.+++.++ +.+. || +++++|.||+|+|++|+.++|. +..|+++++++...+..+ +.
T Consensus 228 ---~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~ 303 (468)
T 2qae_A 228 ---NEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDH-FE 303 (468)
T ss_dssp ---HTCCEEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTT-SB
T ss_pred ---cCCcEEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCC-cc
Confidence 125666654 77776432 4555 77 5789999999999999988753 335777765443334333 34
Q ss_pred cCCCCcEEEccccc-c-chhHHHHHHHHHHHHHHcCC
Q psy12350 999 IEHPTMFILGVPRH-T-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 999 ~~~p~l~~iG~~~~-~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.||||++|++.. . ...+.+..||+.+|..+.|.
T Consensus 304 t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 340 (468)
T 2qae_A 304 TSIPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAGK 340 (468)
T ss_dssp CSSTTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTTC
T ss_pred cCCCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcCC
Confidence 68999999999987 4 45689999999999999875
No 131
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=99.77 E-value=4.9e-19 Score=199.66 Aligned_cols=272 Identities=11% Similarity=0.112 Sum_probs=167.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC----CCCCCCCCCccccccCccccccc---ccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH----IGCDQYGLPVHSSMYKSLKTNLP---KDL 811 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~----~g~~~~g~p~~~~~y~~~~~~~~---~~~ 811 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+ ..+||.|..... ++... ++. ...+...+..... ..+
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~~g--~~v~lie~-~~~gg~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~ 79 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAARAN--LQPVLITG-MEKGGQLTTTTEVENWPGDPN-DLT-GPLLMERMHEHATKFETEI 79 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTTT--CCCEEECC-SSTTGGGGGCSBCCCSTTCCS-SCB-HHHHHHHHHHHHHHTTCEE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEcc-CCCCceEecchhhhhCCCCCC-CCC-HHHHHHHHHHHHHHCCCEE
Confidence 347899999999999999999999 99999997 478998875321 11100 000 0000000000000 000
Q ss_pred c--cccCCCCCCC-C-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHH
Q psy12350 812 M--ELCGYGHKGN-A-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 812 ~--~~~~~~~~~~-~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~e 883 (1129)
. .......... + ...+.....++.+|+.|+.|++||.+.|.+..+|+..+.+.....+|+|+|||+|.+|+|
T Consensus 80 ~~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~ViG~G~~g~e 159 (320)
T 1trb_A 80 IFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGFFYRNQKVAVIGGGNTAVE 159 (320)
T ss_dssp ECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGGGGTTSEEEEECSSHHHHH
T ss_pred EEeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCccccCCCeEEEECCCHHHHH
Confidence 0 0000000000 0 001111122333899999999999877766666665444433457899999999999999
Q ss_pred HHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-----EEecC--
Q psy12350 884 ITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-----VRFQD-- 954 (1129)
Q Consensus 884 iA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-----V~~~d-- 954 (1129)
+|..|++.+.+|+++.+.+.... .+.+..... +.+ ...+|++..+ +.++..++ |++.+
T Consensus 160 ~A~~l~~~g~~Vtlv~~~~~~~~-~~~~~~~l~---------~~l---~~~gv~i~~~~~v~~i~~~~~~v~~v~~~~~~ 226 (320)
T 1trb_A 160 EALYLSNIASEVHLIHRRDGFRA-EKILIKRLM---------DKV---ENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQ 226 (320)
T ss_dssp HHHHHTTTSSEEEEECSSSSCCC-CHHHHHHHH---------HHH---HTSSEEEECSCEEEEEEECSSSEEEEEEECCT
T ss_pred HHHHHHhcCCeEEEEEeCCcccc-CHHHHHHHH---------Hhc---ccCCeEEEcCceeEEEEcCCCceEEEEEEecc
Confidence 99999999999999988654321 111111000 000 0236777654 78886543 77765
Q ss_pred --C--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccce----eecCCCCcEEEcccccc--chhHHHHHHHH
Q psy12350 955 --G--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHT----INIEHPTMFILGVPRHT--LLFNLFDLQVR 1024 (1129)
Q Consensus 955 --G--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~----~~~~~p~l~~iG~~~~~--~~~~~~e~qa~ 1024 (1129)
| +++++|.||+|||++|+.+++.. ++.++ ++...+...+ ..++.||||++|++... .....+..|++
T Consensus 227 ~~g~~~~i~~D~vv~a~G~~p~~~~~~~--~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~ 303 (320)
T 1trb_A 227 NSDNIESLDVAGLFVAIGHSPNTAIFEG--QLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGC 303 (320)
T ss_dssp TCCCCEEEECSEEEECSCEEESCGGGTT--TSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHH
T ss_pred CCCceEEEEcCEEEEEeCCCCChHHhcc--ccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHH
Confidence 5 46899999999999999888763 45555 4433333332 36789999999998764 24566777777
Q ss_pred HHHHHHc
Q psy12350 1025 LFQQLMQ 1031 (1129)
Q Consensus 1025 ~~a~~l~ 1031 (1129)
.+|..+.
T Consensus 304 ~aa~~i~ 310 (320)
T 1trb_A 304 MAALDAE 310 (320)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7776553
No 132
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=99.77 E-value=4.5e-19 Score=199.40 Aligned_cols=258 Identities=14% Similarity=0.101 Sum_probs=153.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccC--ccc---------cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYK--SLK---------TNLP 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~--~~~---------~~~~ 808 (1129)
.+++|||+||+|++||.+|.+.| ++|+|||++ ..||++.. || +|....++. .+. .+..
T Consensus 5 yDvvIIG~GpAGl~AA~~la~~g--~~v~liE~~-~~gg~~~~----G~----~~~~~~i~~~~g~~~~i~~~~l~~~~~ 73 (314)
T 4a5l_A 5 HDVVIIGSGPAAHTAAIYLGRSS--LKPVMYEGF-MAGGVAAG----GQ----LTTTTIIENFPGFPNGIDGNELMMNMR 73 (314)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCCEEECCS-SGGGCCTT----CG----GGGSSEECCSTTCTTCEEHHHHHHHHH
T ss_pred CcEEEECCCHHHHHHHHHHHHCC--CCEEEEecC-CCCCcccC----CC----cCChHHhhhccCCcccCCHHHHHHHHH
Confidence 47899999999999999999999 999999986 46666542 22 111111110 000 0000
Q ss_pred cccccccCCCC----------CC-------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC--CCCCC
Q psy12350 809 KDLMELCGYGH----------KG-------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP--EPFAG 869 (1129)
Q Consensus 809 ~~~~~~~~~~~----------~~-------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~--~~~~g 869 (1129)
.....+ ...+ .. .....+....-++.+|+.|+.|++||.+.+.+..++...+.+. ..+++
T Consensus 74 ~~~~~~-~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~ 152 (314)
T 4a5l_A 74 TQSEKY-GTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRN 152 (314)
T ss_dssp HHHHHT-TCEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTT
T ss_pred HHHhhc-CcEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCC
Confidence 000000 0000 00 0011122223344499999999999988766666666555433 23578
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP 947 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~ 947 (1129)
|+|+|||+|.+|+|+|..|++.|++||++++................ ..++..... +.++..
T Consensus 153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~i~~ 216 (314)
T 4a5l_A 153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLN----------------HPKIEVIWNSELVELEG 216 (314)
T ss_dssp SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHT----------------CTTEEEECSEEEEEEEE
T ss_pred CeEEEECCChHHHHHHHHHHHhCCeeeeecccccccccchhhhhhhc----------------ccceeeEeeeeeEEEEe
Confidence 99999999999999999999999999999876543221110000000 001111111 112211
Q ss_pred -----CcEE-----ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--h
Q psy12350 948 -----TGVR-----FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--L 1015 (1129)
Q Consensus 948 -----~~V~-----~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~ 1015 (1129)
+++. ..+++++++|.|++|+|++|+..++.. ++.+++++.. +..+ +.++.|+||++||+.... .
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l~~--~~~~~~~G~i-v~~~-~~Ts~pgIyA~GDv~~~~~~~ 292 (314)
T 4a5l_A 217 DGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFLGG--QVKTADDGYI-LTEG-PKTSVDGVFACGDVCDRVYRQ 292 (314)
T ss_dssp SSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGGTT--SSCBCTTSCB-CCBT-TBCSSTTEEECSTTTCSSCCC
T ss_pred eeeccceeEEeecccccceeeccccceEecccccChhHhcc--cceEcCCeeE-eCCC-CccCCCCEEEEEeccCCcchH
Confidence 1122 235667899999999999999988864 3455555443 2222 457899999999987543 3
Q ss_pred hHHHHHHHHHHHHH
Q psy12350 1016 FNLFDLQVRLFQQL 1029 (1129)
Q Consensus 1016 ~~~~e~qa~~~a~~ 1029 (1129)
...+-.|++.+|..
T Consensus 293 ~~~A~~~G~~AA~~ 306 (314)
T 4a5l_A 293 AIVAAGSGCMAALS 306 (314)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555666665543
No 133
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*
Probab=99.76 E-value=1.7e-19 Score=212.80 Aligned_cols=270 Identities=17% Similarity=0.245 Sum_probs=171.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPVHS-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~~~-- 797 (1129)
.+++|||+|++|+++|++|.+.| .+|+|||++ .+||+|.. .||-+ +|++...
T Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~liE~~-~~GG~~~~---~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~ 78 (450)
T 1ges_A 5 YDYIAIGGGSGGIASINRAAMYG--QKCALIEAK-ELGGTCVN---VGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK 78 (450)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEEESS-CTTHHHHH---HSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEcCC-CCCCcccc---cCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence 46899999999999999999999 999999997 79999973 22210 0110000
Q ss_pred cccCcccccccc----------ccccccCCCCCCC-------C-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcE
Q psy12350 798 SMYKSLKTNLPK----------DLMELCGYGHKGN-------A-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPI 855 (1129)
Q Consensus 798 ~~y~~~~~~~~~----------~~~~~~~~~~~~~-------~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~ 855 (1129)
.-+..+...... ....-....+-.. . ...+....-++.+|+.|..|++||.+ .+
T Consensus 79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p~~p~i~g~~----~~ 154 (450)
T 1ges_A 79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRPSHPDIPGVE----YG 154 (450)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEECCCCSTTGG----GS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCCCCCCCCCCCcc----ce
Confidence 000000000000 0000000000000 0 00011112233399999999999974 24
Q ss_pred EeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCC
Q psy12350 856 LHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPN 934 (1129)
Q Consensus 856 ~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1129)
+++.++..... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+.+ . ..
T Consensus 155 ~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l---------~---~~ 221 (450)
T 1ges_A 155 IDSDGFFALPA-LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVM---------N---AE 221 (450)
T ss_dssp BCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHH---------H---HH
T ss_pred ecHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHH---------H---HC
Confidence 45555443333 3799999999999999999999999999999987665432 222221111111 0 11
Q ss_pred CeEEcCC--eeEEeCC-----cEEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEE
Q psy12350 935 NVVLKPD--VAELTPT-----GVRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFI 1006 (1129)
Q Consensus 935 ~V~~~~~--i~~v~~~-----~V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~ 1006 (1129)
+|+++.+ |.+++.+ .|++.||+++++|.||+|+|++|+.++|. +..|+++++++...+..++ .++.||||+
T Consensus 222 Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~-~t~~~~IyA 300 (450)
T 1ges_A 222 GPQLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ-NTNIEGIYA 300 (450)
T ss_dssp SCEEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTS-BCSSTTEEE
T ss_pred CCEEEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCC-ccCCCCEEE
Confidence 5666544 7777542 37788999999999999999999988663 3467777755543443333 468999999
Q ss_pred Ecccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1007 LGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1007 iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+|++... ...+.+..||+.+|..+.|.
T Consensus 301 ~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 328 (450)
T 1ges_A 301 VGDNTGAVELTPVAVAAGRRLSERLFNN 328 (450)
T ss_dssp CSGGGTSCCCHHHHHHHHHHHHHHHHTT
T ss_pred EeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 9998754 46689999999999999874
No 134
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}
Probab=99.76 E-value=4.3e-19 Score=209.60 Aligned_cols=271 Identities=14% Similarity=0.180 Sum_probs=167.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccccc--------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDL-------- 811 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~-------- 811 (1129)
-+++|||+|++|+++|..|++.++..+|+|||+++.+++......+.-. +.. ....+........
T Consensus 4 ~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~~~~~p~~~~---~~~----~~~~~~~~~~~~~~~~~gi~v 76 (449)
T 3kd9_A 4 KKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHAPCGIPYVVE---GLS----TPDKLMYYPPEVFIKKRGIDL 76 (449)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC-------------------------------CTHHHHTTCEE
T ss_pred CcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccCCcCCccccC---CCC----CHHHhhhcCHHHHHHhcCcEE
Confidence 4689999999999999999999555999999999877643210000000 000 0000000000000
Q ss_pred ------cccc--CCCCCCCCC-CCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCC-------CCCCCCCeEEEE
Q psy12350 812 ------MELC--GYGHKGNAD-KSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT-------PEPFAGKQAVVV 875 (1129)
Q Consensus 812 ------~~~~--~~~~~~~~~-~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~-------~~~~~gk~VvVV 875 (1129)
.... ...+..... ..+....-++.+|+.|+.|++||++. . .++......+ ...+.+|+|+||
T Consensus 77 ~~~~~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~vvVi 154 (449)
T 3kd9_A 77 HLNAEVIEVDTGYVRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNL-K-GVFTADLPPDALAIREYMEKYKVENVVII 154 (449)
T ss_dssp ETTCEEEEECSSEEEEECSSSEEEEECSEEEECCCEEECCCSCBTTTS-T-TEECSCSTHHHHHHHHHHSSSCCCEEEEE
T ss_pred EecCEEEEEecCCCEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCC-C-CEEEeCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 0000 000000000 01222334445999999999999864 2 2443332221 123468999999
Q ss_pred cCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEc--CCeeEEeCCc--
Q psy12350 876 GSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLK--PDVAELTPTG-- 949 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~--~~i~~v~~~~-- 949 (1129)
|+|.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+. + ...|++. ..+.+++.++
T Consensus 155 GgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~---------l----~~~v~i~~~~~v~~i~~~~~v 221 (449)
T 3kd9_A 155 GGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEK---------L----KKHVNLRLQEITMKIEGEERV 221 (449)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHH---------H----TTTSEEEESCCEEEEECSSSC
T ss_pred CCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHH---------H----HhCcEEEeCCeEEEEeccCcE
Confidence 9999999999999999999999998776553 222222211110 1 1114443 3477776543
Q ss_pred -EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc-----------cchhH
Q psy12350 950 -VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH-----------TLLFN 1017 (1129)
Q Consensus 950 -V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-----------~~~~~ 1017 (1129)
..+.||+++++|.||+|||++|+.+++.. +|+++++++...+... +.++.||||++|++.. ....+
T Consensus 222 ~~v~~~g~~i~~D~Vv~a~G~~p~~~l~~~-~gl~~~~~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~ 299 (449)
T 3kd9_A 222 EKVVTDAGEYKAELVILATGIKPNIELAKQ-LGVRIGETGAIWTNEK-MQTSVENVYAAGDVAETRHVITGRRVWVPLAP 299 (449)
T ss_dssp CEEEETTEEEECSEEEECSCEEECCHHHHH-TTCCBCTTSSBCCCTT-CBCSSTTEEECSTTBCEEBTTTCSEECCCCHH
T ss_pred EEEEeCCCEEECCEEEEeeCCccCHHHHHh-CCccCCCCCCEEECCC-CccCCCCEEEeeeeeeeccccCCceEEeccHH
Confidence 35678888999999999999999877654 6777776554333332 4468999999999863 13568
Q ss_pred HHHHHHHHHHHHHcCCC
Q psy12350 1018 LFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1018 ~~e~qa~~~a~~l~g~~ 1034 (1129)
.+..||+.+|+.+.|..
T Consensus 300 ~A~~~g~~aa~~i~g~~ 316 (449)
T 3kd9_A 300 AGNKMGYVAGSNIAGKE 316 (449)
T ss_dssp HHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhcCCC
Confidence 99999999999999863
No 135
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=99.76 E-value=1.1e-19 Score=213.49 Aligned_cols=276 Identities=10% Similarity=0.076 Sum_probs=163.8
Q ss_pred cceEEEEcCChHHHHHHHHhhc-CCC----CceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-PGS----GFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIME 83 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-~~~----~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~ 83 (1129)
+++|+||||||||++||..|++ .++ +++|+|||+.+.+||+|.|.-
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv----------------------------- 53 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGV----------------------------- 53 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTS-----------------------------
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCcccccc-----------------------------
Confidence 4799999999999999999988 633 699999999989999987510
Q ss_pred cCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 84 LSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 84 ~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
.+ .++...++..++++++++.++ .++.+++| .+ .+++ .+ ....|| +
T Consensus 54 ~p----------~~~~~~~~~~~~~~~~~~~~v--~~~~~v~v---~~--------~v~~---~~---~~~~~d-----~ 99 (456)
T 1lqt_A 54 AP----------DHPKIKSISKQFEKTAEDPRF--RFFGNVVV---GE--------HVQP---GE---LSERYD-----A 99 (456)
T ss_dssp CT----------TCTGGGGGHHHHHHHHTSTTE--EEEESCCB---TT--------TBCH---HH---HHHHSS-----E
T ss_pred CC----------CCCCHHHHHHHHHHHHhcCCC--EEEeeEEE---CC--------EEEE---CC---CeEeCC-----E
Confidence 01 122334567778887777655 45555332 11 1111 11 134689 9
Q ss_pred EEEecccCCC-CCccccccchhhhcccccccCCCCCcccccccccch-hhhcccccccCCCCCCccchhccccccccccc
Q psy12350 164 LQLMQGHVTL-PSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEK-YLNSLCSMMRDESPVPPVLLKIYFESFARCSE 241 (1129)
Q Consensus 164 lvvAtG~~~~-p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 241 (1129)
||+||| +. |..|++||.. +.| .++.. +..-. ........
T Consensus 100 lViAtG--~~~~~~~~ipG~~---~~g---------------v~~~~~~~~~~-------------------~~~~d~~~ 140 (456)
T 1lqt_A 100 VIYAVG--AQSDRMLNIPGED---LPG---------------SIAAVDFVGWY-------------------NAHPHFEQ 140 (456)
T ss_dssp EEECCC--CCEECCCCCTTTT---STT---------------EEEHHHHHHHH-------------------TTCGGGTT
T ss_pred EEEeeC--CCCCCCCCCCCCC---CCC---------------cEEHHHHHhhh-------------------hcCccccc
Confidence 999999 54 6667777732 111 11111 10000 00000001
Q ss_pred ccccccccceeEeeceeeeecCCCCCCCCcccchhhhccc--------------------c-cEEEEccccCCcccc---
Q psy12350 242 DFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTE--------------------A-TTVFLSHHSEHVKKL--- 297 (1129)
Q Consensus 242 ~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~--------------------~-~~V~lv~r~~~~~~~--- 297 (1129)
.+.....++++| ||+|++|+|+|..|++. + ++|++++|+..+...
T Consensus 141 ~~~~~~~~~vvV-----------IG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~ 209 (456)
T 1lqt_A 141 VSPDLSGARAVV-----------IGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTT 209 (456)
T ss_dssp CCCCCCSSEEEE-----------ECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCH
T ss_pred chhhcCCCEEEE-----------ECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccCh
Confidence 111112344444 79999999999999874 3 699999998754210
Q ss_pred -------------------c---------------------------CC------CCe--EEcCCceEEcCC----ceEE
Q psy12350 298 -------------------R---------------------------FP------NNV--VKKPDIAELTPT----GVRF 319 (1129)
Q Consensus 298 -------------------~---------------------------~~------~~i--~~~~~v~~~~~~----~v~~ 319 (1129)
. .. ..| .....+.++.++ +|.+
T Consensus 210 ~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~ 289 (456)
T 1lqt_A 210 LELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVL 289 (456)
T ss_dssp HHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEE
T ss_pred HHHHHhhcCCCceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEE
Confidence 0 00 112 334456777654 2666
Q ss_pred c----------------CC--CEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccCCCCCeEEeccccccc
Q psy12350 320 Q----------------DG--SYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRYP 381 (1129)
Q Consensus 320 ~----------------dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~~~~~~ 381 (1129)
+ +| +++++|.||+|+||+++. +. ++..+++..+....+...++.|++|.+|.....|
T Consensus 290 ~~~~~~~~~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~--l~---gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp 364 (456)
T 1lqt_A 290 GRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP--TP---GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGP 364 (456)
T ss_dssp EEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCEECCC--CT---TSCCBTTTTBCCEETTEETTCSSEEECTHHHHCS
T ss_pred EEEEecCCCcccccccCCCceEEEEcCEEEEccccccCC--CC---CCcccCCCCeeECCCCcCCCCCCEEEEeccCCCC
Confidence 4 34 357999999999999876 22 2333332211111222224689999999885433
Q ss_pred c---cccccceeeehhhccccccc
Q psy12350 382 F---LHESCGIKVVNKNVQPLYKH 402 (1129)
Q Consensus 382 ~---~~~~~~~~~~a~~~~~~~~~ 402 (1129)
. ..+..||+.+|.++.+.+.+
T Consensus 365 ~~~i~~a~~~g~~~a~~i~~~l~~ 388 (456)
T 1lqt_A 365 TGVIGTNKKDAQDTVDTLIKNLGN 388 (456)
T ss_dssp CSCTTHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHh
Confidence 2 12447888888888766544
No 136
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=99.76 E-value=1.2e-19 Score=216.13 Aligned_cols=183 Identities=16% Similarity=0.203 Sum_probs=133.2
Q ss_pred hhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhc---CCEEEEEecCCCCccc-h
Q psy12350 833 VLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATT---GKQAVVVGSGQSGLDI-T 908 (1129)
Q Consensus 833 v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~---~~~V~vv~~~~~~~~~-~ 908 (1129)
++.+|+.|..|++||.+ .++++.++..... .+|+|+|||+|.+|+|+|..|++. |.+|+++++.+..++. .
T Consensus 156 viAtGs~p~~p~i~g~~----~~~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d 230 (490)
T 1fec_A 156 LLATGSWPQHLGIEGDD----LCITSNEAFYLDE-APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFD 230 (490)
T ss_dssp EECCCEEECCCCSBTGG----GCBCHHHHTTCSS-CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSC
T ss_pred EEeCCCCCCCCCCCCcc----ceecHHHHhhhhh-cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccC
Confidence 44599999999999974 2455555544333 379999999999999999999999 9999999998765542 2
Q ss_pred hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecCCcEeeccEEEEccCccCcCCCC-CCCC
Q psy12350 909 LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQDGSYEQVDIILCCTGYSNHYPFL-HESC 980 (1129)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~dG~~~~~D~VI~aTG~~~~~~fl-~~~~ 980 (1129)
+.+.....+.+ . ..+|+++.+ |.+++.+ .|++.||+++++|.||+|+|++|+.++| -+..
T Consensus 231 ~~~~~~l~~~l---------~---~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~~L~l~~~ 298 (490)
T 1fec_A 231 SELRKQLTEQL---------R---ANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLEKA 298 (490)
T ss_dssp HHHHHHHHHHH---------H---HTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCTTSCGGGG
T ss_pred HHHHHHHHHHH---------H---hCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCccccCchhc
Confidence 22211111111 0 125666544 7777542 3778899899999999999999998865 3457
Q ss_pred CeeecCCcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 981 GIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 981 g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|+++++++...+..+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 299 gl~~~~~G~I~Vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 351 (490)
T 1fec_A 299 GVEVAKNGAIKVDAY-SKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFAN 351 (490)
T ss_dssp TCCBCTTSCBCCCTT-CBCSSTTEEECGGGGCSCCCHHHHHHHHHHHHHHHHSS
T ss_pred CccCCCCCCEEECCC-CccCCCCEEEEeccCCCccCHHHHHHHHHHHHHHhcCC
Confidence 888875554344433 34689999999999864 46789999999999999874
No 137
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}
Probab=99.76 E-value=1.5e-19 Score=215.49 Aligned_cols=270 Identities=18% Similarity=0.216 Sum_probs=171.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~~~~-- 798 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+ +.+||+|... ||. .+|++....
T Consensus 27 ~DVvVIGgG~aGl~aA~~la~~G--~~V~liEk-~~~GG~~~~~---gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~ 100 (484)
T 3o0h_A 27 FDLFVIGSGSGGVRAARLAGALG--KRVAIAEE-YRIGGTCVIR---GCVPKKLYFYASQYAQEFSKSIGFGWKYADPIF 100 (484)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEES-SCTTHHHHHH---SHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEE
T ss_pred CCEEEECcCHHHHHHHHHHHhCc--CEEEEEeC-CCCCCceecc---CccccHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 58899999999999999999999 99999999 7899998742 221 011110000
Q ss_pred ccCcccc-------cccccc---ccccCCCCC--------CC------CCCCCCChhhhhhccCCCC-CCCCCCCCCCCC
Q psy12350 799 MYKSLKT-------NLPKDL---MELCGYGHK--------GN------ADKSYIGAKDVLENYNHPI-YPEFKGKDMCQI 853 (1129)
Q Consensus 799 ~y~~~~~-------~~~~~~---~~~~~~~~~--------~~------~~~~~~~~~~v~~~~~~P~-~P~i~G~~~f~g 853 (1129)
.|..+.. ...... ..-....+- .. ....+.....++.+|+.|. .|++||.+.
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~--- 177 (484)
T 3o0h_A 101 NWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSDL--- 177 (484)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGG---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccc---
Confidence 0000000 000000 000000000 00 0111112233344999999 999999762
Q ss_pred cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCC
Q psy12350 854 PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCL 932 (1129)
Q Consensus 854 ~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1129)
++++.++..... .+|+|+|||+|.+|+|+|..+++.|.+|+++.+.+..++. .+.+.....+.+.
T Consensus 178 -~~~~~~~~~~~~-~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~------------ 243 (484)
T 3o0h_A 178 -CLTSNEIFDLEK-LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMV------------ 243 (484)
T ss_dssp -SBCTTTGGGCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHH------------
T ss_pred -cccHHHHHhHHh-cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHH------------
Confidence 344444443332 4899999999999999999999999999999987655432 2222111111100
Q ss_pred CCCeEEcCC--eeEEeCC----cEEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcE
Q psy12350 933 PNNVVLKPD--VAELTPT----GVRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMF 1005 (1129)
Q Consensus 933 ~~~V~~~~~--i~~v~~~----~V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~ 1005 (1129)
..+|+++.+ |.+++.+ .|++.||+++++|.||+|||++|+..+|. +..|+++++++...+... +.++.||||
T Consensus 244 ~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~Iy 322 (484)
T 3o0h_A 244 AKGISIIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEK-MTTNVSHIW 322 (484)
T ss_dssp HHTCEEESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTT-SBCSSTTEE
T ss_pred HCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCC-CCCCCCCEE
Confidence 115666653 7888654 37888999999999999999999988764 336777776554433333 347899999
Q ss_pred EEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1006 ILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1006 ~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++|++... ...+.+..||+.+|+.+.|.
T Consensus 323 a~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 351 (484)
T 3o0h_A 323 AVGDVTGHIQLTPVAIHDAMCFVKNAFEN 351 (484)
T ss_dssp ECGGGGTSCCCHHHHHHHHHHHHHHHHC-
T ss_pred EEEecCCCCcCHHHHHHHHHHHHHHHcCC
Confidence 99998764 45689999999999999874
No 138
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.76 E-value=4.8e-19 Score=210.76 Aligned_cols=273 Identities=16% Similarity=0.209 Sum_probs=176.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC--------------------CCCCccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ--------------------YGLPVHS-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~--------------------~g~p~~~-- 797 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+++.+||+|... +|.+ +|++...
T Consensus 7 ~dvvIIGaG~aGl~aA~~l~~~g--~~V~liE~~~~~GG~~~~~---g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (470)
T 1dxl_A 7 NDVVIIGGGPGGYVAAIKAAQLG--FKTTCIEKRGALGGTCLNV---GCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE 81 (470)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT--CCEEEEECSSSSCCSHHHH---SHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEE
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCccccccCc---CccchHHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence 46899999999999999999999 9999999998999998632 2210 0110000
Q ss_pred cccCccccc-----------cccccc----cc-cC---------CCCCCCCC--CCCCChhhhhhccCCCCCCCCCCCCC
Q psy12350 798 SMYKSLKTN-----------LPKDLM----EL-CG---------YGHKGNAD--KSYIGAKDVLENYNHPIYPEFKGKDM 850 (1129)
Q Consensus 798 ~~y~~~~~~-----------~~~~~~----~~-~~---------~~~~~~~~--~~~~~~~~v~~~~~~P~~P~i~G~~~ 850 (1129)
..+..+... ...... .+ .+ +....... ..+.....++.+|+.|..|+++|.+.
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g~~~ 161 (470)
T 1dxl_A 82 IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVTIDE 161 (470)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBCCCS
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCc
Confidence 000000000 000000 00 00 00000000 11222233344999999999999753
Q ss_pred CCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccc
Q psy12350 851 CQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTS 929 (1129)
Q Consensus 851 f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 929 (1129)
..++++.+...... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +.
T Consensus 162 --~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~---------l~ 229 (470)
T 1dxl_A 162 --KKIVSSTGALALSE-IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRS---------LE 229 (470)
T ss_dssp --SSEECHHHHTTCSS-CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH---------HH
T ss_pred --ccEEeHHHhhhhhh-cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHH---------HH
Confidence 24777777665443 4799999999999999999999999999999987765542 22222211111 11
Q ss_pred cCCCCCeEEcCC--eeEEeCCc----EEec---CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCccccccccee
Q psy12350 930 LCLPNNVVLKPD--VAELTPTG----VRFQ---DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTI 997 (1129)
Q Consensus 930 ~~~~~~V~~~~~--i~~v~~~~----V~~~---dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~ 997 (1129)
..+|+++.+ |.+++.++ +.+. +| +++++|.||+|+|++|+.++|. +.+|+++++++...+..+ +
T Consensus 230 ---~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~ 305 (470)
T 1dxl_A 230 ---KQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNER-F 305 (470)
T ss_dssp ---HSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTT-C
T ss_pred ---HcCCEEEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcC-C
Confidence 125666554 78886532 4454 55 5789999999999999988853 447888876553344443 3
Q ss_pred ecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 998 NIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 998 ~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 306 ~t~~~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~g~ 342 (470)
T 1dxl_A 306 STNVSGVYAIGDVIPGPMLAHKAEEDGVACVEYLAGK 342 (470)
T ss_dssp BCSSTTEEECSTTSSSCCCHHHHHHHHHHHHHHHTTS
T ss_pred ccCCCCEEEEeccCCCCccHHHHHHHHHHHHHHHcCC
Confidence 4689999999999765 35688999999999999875
No 139
>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*
Probab=99.76 E-value=2.2e-19 Score=212.49 Aligned_cols=272 Identities=20% Similarity=0.283 Sum_probs=174.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC------------------CCCCCccc--ccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD------------------QYGLPVHS--SMY 800 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~------------------~~g~p~~~--~~y 800 (1129)
+++|||+|++|+++|..|.+.| .+|+|+|+++.+||+|... ||. .+|++... .-+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--~~V~lie~~~~~GG~~~~~---g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~ 77 (455)
T 2yqu_A 3 DLLVIGAGPGGYVAAIRAAQLG--MKVGVVEKEKALGGTCLRV---GCIPSKALLETTERIYEAKKGLLGAKVKGVELDL 77 (455)
T ss_dssp EEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECH
T ss_pred CEEEECCChhHHHHHHHHHHCC--CeEEEEeCCCCCCCcccee---cchhHHHHHHHHHHHHHHhhhcCCcccCCCccCH
Confidence 5789999999999999999999 9999999998999998732 220 01111000 000
Q ss_pred Cccccc-------cc---cccccccCCC--------CCCC------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEE
Q psy12350 801 KSLKTN-------LP---KDLMELCGYG--------HKGN------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPIL 856 (1129)
Q Consensus 801 ~~~~~~-------~~---~~~~~~~~~~--------~~~~------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~ 856 (1129)
..+... .. .....-.+.. .... ....+.....++.+|+.|+.|+++|.+. ..++
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~--~~v~ 155 (455)
T 2yqu_A 78 PALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAPLIPPWAQVDY--ERVV 155 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCS--SSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCc--CcEe
Confidence 000000 00 0000000000 0000 0001111222334999999999998653 2477
Q ss_pred eeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCC
Q psy12350 857 HSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNN 935 (1129)
Q Consensus 857 hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1129)
++.++.+... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+
T Consensus 156 ~~~~~~~~~~-~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l~~~---------l~---~~G 222 (455)
T 2yqu_A 156 TSTEALSFPE-VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAERV---------FK---KQG 222 (455)
T ss_dssp CHHHHTCCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHH---------HH---HHT
T ss_pred chHHhhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHHHHH---------HH---HCC
Confidence 8777665443 4799999999999999999999999999999987765432 11111111111 10 115
Q ss_pred eEEcCC--eeEEeC--Cc--EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEc
Q psy12350 936 VVLKPD--VAELTP--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILG 1008 (1129)
Q Consensus 936 V~~~~~--i~~v~~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG 1008 (1129)
|+++.+ |.+++. ++ +.+.||+++++|.||+|||++++.+++. +..|+.+++++...+..+ +.++.|+||++|
T Consensus 223 v~i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~-~~t~~~~iya~G 301 (455)
T 2yqu_A 223 LTIRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEH-LRTRVPHIYAIG 301 (455)
T ss_dssp CEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTT-SBCSSTTEEECG
T ss_pred CEEEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCC-cccCCCCEEEEe
Confidence 666543 777754 23 4556898999999999999999988753 346777765443334333 346899999999
Q ss_pred cccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1009 VPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1009 ~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++.... ..+.+..||+.+|..+.|.
T Consensus 302 D~~~~~~~~~~A~~~g~~aa~~i~~~ 327 (455)
T 2yqu_A 302 DVVRGPMLAHKASEEGIAAVEHMVRG 327 (455)
T ss_dssp GGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred cCCCCccCHHHHHHhHHHHHHHHcCC
Confidence 987653 4678999999999999874
No 140
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=99.76 E-value=2e-18 Score=193.70 Aligned_cols=267 Identities=14% Similarity=0.125 Sum_probs=165.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCcc--ccccCcccccccc---------
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVH--SSMYKSLKTNLPK--------- 809 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~--~~~y~~~~~~~~~--------- 809 (1129)
+++|||+|++|+++|..|.+.| ++++|+|+ .+||.|....... ...+.+.. ..+...+.....+
T Consensus 3 dvvIIG~G~aGl~aA~~l~~~g--~~v~li~~--~~gG~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 77 (310)
T 1fl2_A 3 DVLIVGSGPAGAAAAIYSARKG--IRTGLMGE--RFGGQILDTVDIE-NYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHTTT--CCEEEECS--STTGGGGGCCEEC-CBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CEEEECcCHHHHHHHHHHHHCC--CcEEEEeC--CCCceeccccccc-cccCcCCCCHHHHHHHHHHHHHHcCCeEEccC
Confidence 5789999999999999999999 99999986 5899997421000 00000000 0000000000000
Q ss_pred cccccc-------CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHH
Q psy12350 810 DLMELC-------GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGL 882 (1129)
Q Consensus 810 ~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~ 882 (1129)
...... .+.........+....-++.+|+.|+.|++||.+.|.+..+|+..+.+...+.+|+|+|||+|.+|+
T Consensus 78 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~g~ 157 (310)
T 1fl2_A 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGV 157 (310)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGGGGBTCEEEEECCSHHHH
T ss_pred EEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHhhcCCCEEEEECCCHHHH
Confidence 000000 0000000000111122233389899999999998887766665544333445789999999999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEecC-
Q psy12350 883 DITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQD- 954 (1129)
Q Consensus 883 eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~d- 954 (1129)
|+|..|++.+.+|+++.+.+... ....+. ..+.. ..+|++..+ +.++.++ +|++.+
T Consensus 158 e~A~~l~~~g~~Vtlv~~~~~~~-~~~~~~-------------~~l~~--~~gv~v~~~~~v~~i~~~~~~v~~v~~~~~ 221 (310)
T 1fl2_A 158 EAAIDLAGIVEHVTLLEFAPEMK-ADQVLQ-------------DKLRS--LKNVDIILNAQTTEVKGDGSKVVGLEYRDR 221 (310)
T ss_dssp HHHHHHHTTBSEEEEECSSSSCC-SCHHHH-------------HHHHT--CTTEEEESSEEEEEEEESSSSEEEEEEEET
T ss_pred HHHHHHHHhCCEEEEEEeCcccC-ccHHHH-------------HHHhh--CCCeEEecCCceEEEEcCCCcEEEEEEEEC
Confidence 99999999999999998865431 111000 01110 136777765 7777653 467754
Q ss_pred --Cc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHHH
Q psy12350 955 --GS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQQ 1028 (1129)
Q Consensus 955 --G~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a~ 1028 (1129)
|+ ++++|.||+|||++|+.+++.. . +.+++++...+...+ .++.||||++|++.... ....+..|++.+|.
T Consensus 222 ~~g~~~~i~~D~vi~a~G~~p~~~~l~~-~-l~~~~~g~i~vd~~~-~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~ 298 (310)
T 1fl2_A 222 VSGDIHNIELAGIFVQIGLLPNTNWLEG-A-VERNRMGEIIIDAKC-ETNVKGVFAAGDCTTVPYKQIIIATGEGAKASL 298 (310)
T ss_dssp TTCCEEEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCCTTC-BCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCEEEEeeCCccCchHHhc-c-ccccCCCcEEcCCCC-ccCCCCEEEeecccCCcchhhhhhHhhHHHHHH
Confidence 54 5799999999999999888865 2 555554433443333 47899999999987643 45677788888877
Q ss_pred HHc
Q psy12350 1029 LMQ 1031 (1129)
Q Consensus 1029 ~l~ 1031 (1129)
.+.
T Consensus 299 ~i~ 301 (310)
T 1fl2_A 299 SAF 301 (310)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 141
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*
Probab=99.76 E-value=3.5e-19 Score=217.88 Aligned_cols=275 Identities=16% Similarity=0.228 Sum_probs=174.3
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc----ccccCCCCCCCCCCCCccccccCcccc-----cc-
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG----TWLYTEHIGCDQYGLPVHSSMYKSLKT-----NL- 807 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG----~w~~~~~~g~~~~g~p~~~~~y~~~~~-----~~- 807 (1129)
+.-+++|||+|++|+++|..|++.++..+|+|||+++.+|- ...+. .+.. .+....+...+.. +.
T Consensus 35 ~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~~~~~~lp~~~--~g~~---~~~~~~~~~~~~~~~~~~gi~ 109 (588)
T 3ics_A 35 GSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYISFANCGLPYYI--GGVI---TERQKLLVQTVERMSKRFNLD 109 (588)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHH--TTSS---CCGGGGBSSCHHHHHHHTTCE
T ss_pred cCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCccccCCCCchhh--cCcC---CChHHhhccCHHHHHHhcCcE
Confidence 44578999999999999999999954499999999988651 00000 0000 0000000000000 00
Q ss_pred ---cccccccc--C--CCCCC-CCCC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCCCC
Q psy12350 808 ---PKDLMELC--G--YGHKG-NADK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFAGK 870 (1129)
Q Consensus 808 ---~~~~~~~~--~--~~~~~-~~~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~gk 870 (1129)
........ . +.... .... .+.....++.+|+.|+.|++||++++. .++++..+.+.. +..+|
T Consensus 110 v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~-~v~~~~~~~~~~~~~~~l~~~~~~ 188 (588)
T 3ics_A 110 IRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAK-ALFTLRNVPDTDRIKAYIDEKKPR 188 (588)
T ss_dssp EECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCT-TEEECSSHHHHHHHHHHHHHHCCS
T ss_pred EEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCC-CeEEeCCHHHHHHHHHHHhhcCCC
Confidence 00000000 0 00000 0000 112233445599999999999985444 355555443221 23589
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP 947 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~ 947 (1129)
+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+|+++.+ |++++.
T Consensus 189 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~---~~GV~i~~~~~v~~i~~ 256 (588)
T 3ics_A 189 HATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEH---------MK---NHDVELVFEDGVDALEE 256 (588)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHH---------HH---HTTCEEECSCCEEEEEG
T ss_pred eEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHH---------HH---HcCCEEEECCeEEEEec
Confidence 9999999999999999999999999999987655432 22221111111 10 125666654 888876
Q ss_pred --CcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc------c-----c
Q psy12350 948 --TGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH------T-----L 1014 (1129)
Q Consensus 948 --~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~------~-----~ 1014 (1129)
++|.+.||+++++|.||+|||++|+.++++. .|+.+++++...+..+ +.++.||||++|++.. + .
T Consensus 257 ~~~~v~~~~g~~i~~D~Vi~a~G~~p~~~~l~~-~g~~~~~~g~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~ 334 (588)
T 3ics_A 257 NGAVVRLKSGSVIQTDMLILAIGVQPESSLAKG-AGLALGVRGTIKVNEK-FQTSDPHIYAIGDAIEVKDFVTETETMIP 334 (588)
T ss_dssp GGTEEEETTSCEEECSEEEECSCEEECCHHHHH-TTCCBCGGGCBCCCTT-SBCSSTTEEECGGGBCEEBTTTCCEECCC
T ss_pred CCCEEEECCCCEEEcCEEEEccCCCCChHHHHh-cCceEcCCCCEEECCc-cccCCCCEEEeeeeeecccccCCcccccc
Confidence 5699999999999999999999999877654 6777766554444333 4458999999999863 1 2
Q ss_pred hhHHHHHHHHHHHHHHcC
Q psy12350 1015 LFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 1015 ~~~~~e~qa~~~a~~l~g 1032 (1129)
..+.+..||+.+|+.+.|
T Consensus 335 ~~~~A~~~g~~aa~~i~g 352 (588)
T 3ics_A 335 LAWPANRQGRMLADIIHG 352 (588)
T ss_dssp CHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHhcC
Confidence 457899999999999998
No 142
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.76 E-value=8.8e-19 Score=216.93 Aligned_cols=241 Identities=15% Similarity=0.189 Sum_probs=156.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+||||||||++||..|++ .+++|+|||+++.+||+|.+... + +
T Consensus 372 ~~~~vvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~~gg~~~~~~~---------------------~-------~-- 419 (671)
T 1ps9_A 372 QKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQ---------------------I-------P-- 419 (671)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTT---------------------S-------T--
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCeeecccc---------------------C-------C--
Confidence 35799999999999999999999 66999999999999998873100 0 0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
......++.+++..+++++++ .+++++.|+..+ . ..|| +||||
T Consensus 420 --------~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~~~~--------------------~--~~~d-----~lviA 462 (671)
T 1ps9_A 420 --------GKEEFYETLRYYRRMIEVTGV--TLKLNHTVTADQ--------------------L--QAFD-----ETILA 462 (671)
T ss_dssp --------TCTTHHHHHHHHHHHHHHHTC--EEEESCCCCSSS--------------------S--CCSS-----EEEEC
T ss_pred --------CHHHHHHHHHHHHHHHHHcCC--EEEeCcEecHHH--------------------h--hcCC-----EEEEc
Confidence 011234566677777777776 778887664210 0 0588 99999
Q ss_pred cccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccccc
Q psy12350 168 QGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFR 247 (1129)
Q Consensus 168 tG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 247 (1129)
|| +.|..|++||.....+ .....+ ... . ...
T Consensus 463 tG--~~p~~~~i~G~~~~~v-----------------~~~~~~--------------------------l~~-~---~~~ 493 (671)
T 1ps9_A 463 SG--IVPRTPPIDGIDHPKV-----------------LSYLDV--------------------------LRD-K---APV 493 (671)
T ss_dssp CC--EEECCCCCBTTTSTTE-----------------EEHHHH--------------------------HTS-C---CCC
T ss_pred cC--CCcCCCCCCCCCCCcE-----------------eeHHHH--------------------------hhC-C---CCC
Confidence 99 7888888877321000 000000 000 0 011
Q ss_pred ccceeEeeceeeeecCCCCCCCCcccchhhhccccc-------------------------------------EEEEccc
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSGLDITHDISTEAT-------------------------------------TVFLSHH 290 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~-------------------------------------~V~lv~r 290 (1129)
.++++| ||||++|+|+|..|++.|. +|+++++
T Consensus 494 ~~~VvV-----------IGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 562 (671)
T 1ps9_A 494 GNKVAI-----------IGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQR 562 (671)
T ss_dssp CSEEEE-----------ECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECS
T ss_pred CCeEEE-----------ECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEe
Confidence 334443 8999999999999998763 5666666
Q ss_pred cCCcccccCC---------------CCeEEcCCceEEcCCceEE-cCC--CEeecCEEEEcccccccCCCCCCCCCeEee
Q psy12350 291 SEHVKKLRFP---------------NNVVKKPDIAELTPTGVRF-QDG--SYEQVDIILYCTGYTYRYPFLHESCGIKVV 352 (1129)
Q Consensus 291 ~~~~~~~~~~---------------~~i~~~~~v~~~~~~~v~~-~dg--~~~~~D~VI~atG~~~~~~~l~~~~~~~~~ 352 (1129)
.+..+...++ -++..+..|++++++++++ .+| +++++|.||+|+|++++..+++. +.
T Consensus 563 ~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~---l~-- 637 (671)
T 1ps9_A 563 KASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQP---LI-- 637 (671)
T ss_dssp SCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEECCTTHHH---HH--
T ss_pred cchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCccccHHHHHH---HH--
Confidence 5433221111 1345567788998888877 688 56899999999999998777642 10
Q ss_pred cCcccccccccccCCCCCeEEeccccccc---ccccccceeeehhh
Q psy12350 353 NKNVQPLYKHLINIEHPSMCIIGYTYRYP---FLHESCGIKVVNKN 395 (1129)
Q Consensus 353 ~~~~~~l~~~~~~~~~p~l~~~G~~~~~~---~~~~~~~~~~~a~~ 395 (1129)
...+++|.+|....+. ...+.+||..+|.+
T Consensus 638 -------------~~g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~ 670 (671)
T 1ps9_A 638 -------------DSGKTVHLIGGCDVAMELDARRAIAQGTRLALE 670 (671)
T ss_dssp -------------TTTCCEEECGGGTCCSSCCHHHHHHHHHHHHHH
T ss_pred -------------hcCCCEEEECCcCccCchhHHHHHHHHHHHHHh
Confidence 1235788999775432 22233666665554
No 143
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=99.75 E-value=2.2e-19 Score=209.86 Aligned_cols=272 Identities=16% Similarity=0.098 Sum_probs=166.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc---CCCCCCCCCCCCccccccCcccccccc-------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY---TEHIGCDQYGLPVHSSMYKSLKTNLPK------- 809 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~---~~~~g~~~~g~p~~~~~y~~~~~~~~~------- 809 (1129)
.+++|||+|++|+++|..|++.|...+|+++|+++..+..... ....+.. . ...+.........+
T Consensus 10 ~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~----~-~~~~~~~~~~~~~~~~i~~~~ 84 (415)
T 3lxd_A 10 ADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREPEIPYERPPLSKEYLAREK----T-FERICIRPAQFWEDKAVEMKL 84 (415)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSSSCCBCSGGGGTTTTTTSS----C-SGGGBSSCHHHHHHTTEEEEE
T ss_pred CcEEEECChHHHHHHHHHHHccCcCCCEEEEecCCCCCcCcccCCHHHHcCCC----C-HHHhccCCHHHHHHCCcEEEe
Confidence 4689999999999999999999954559999998865532100 0000000 0 00000000000000
Q ss_pred --cccccc--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCC-----CC-CCeEEEEcCCc
Q psy12350 810 --DLMELC--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEP-----FA-GKQAVVVGSGQ 879 (1129)
Q Consensus 810 --~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~-----~~-gk~VvVVG~G~ 879 (1129)
...... ...........+.....++.+|+.|+.|++||.+. ..+++.....+... .. +|+|+|||+|.
T Consensus 85 ~~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~--~~v~~~~~~~d~~~l~~~~~~~~~~vvViGgG~ 162 (415)
T 3lxd_A 85 GAEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDPRRLSCVGADL--AGVHAVRTKEDADRLMAELDAGAKNAVVIGGGY 162 (415)
T ss_dssp TCCEEEEETTTTEEEETTSCEEEEEEEEECCCEECCCCBTTSSCC--BTEECCCSHHHHHHHHHHHHTTCCEEEEECCSH
T ss_pred CCEEEEEECCCCEEEECCCCEEEeeEEEEccCCccCCCCCCCccc--cCEEEEcCHHHHHHHHHHhhhcCCeEEEECCCH
Confidence 000000 00000000111222233444999999999999763 23333222211111 12 89999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeCC-----cE
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTPT-----GV 950 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~~-----~V 950 (1129)
+|+|+|..+++.|.+|+++++.+..++. .+.+.....+.+. ..+|+++. .|++++.+ +|
T Consensus 163 ~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~v~~v 230 (415)
T 3lxd_A 163 IGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHR------------AHGVDLRTGAAMDCIEGDGTKVTGV 230 (415)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHH------------HTTCEEEETCCEEEEEESSSBEEEE
T ss_pred HHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHH------------hCCCEEEECCEEEEEEecCCcEEEE
Confidence 9999999999999999999987765431 2222222111111 12566654 48888653 48
Q ss_pred EecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc------------hhHH
Q psy12350 951 RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL------------LFNL 1018 (1129)
Q Consensus 951 ~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~------------~~~~ 1018 (1129)
+++||+++++|.||+|||++|+.+++.. .|+..++. + .+..+ +.++.||||++|++.... .++.
T Consensus 231 ~l~dG~~i~aD~Vv~a~G~~p~~~l~~~-~gl~~~~g-i-~vd~~-~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~ 306 (415)
T 3lxd_A 231 RMQDGSVIPADIVIVGIGIVPCVGALIS-AGASGGNG-V-DVDEF-CRTSLTDVYAIGDCAAHANDFADGAVIRLESVQN 306 (415)
T ss_dssp EESSSCEEECSEEEECSCCEESCHHHHH-TTCCCSSS-E-ECCTT-CBCSSTTEEECGGGEEEECGGGTTCEECCCSHHH
T ss_pred EeCCCCEEEcCEEEECCCCccChHHHHh-CCCCcCCC-E-EECCC-CCcCCCCEEEEEeeeeecCcccCCcceeechHHH
Confidence 8899999999999999999999877654 56666633 2 23322 345899999999986532 2589
Q ss_pred HHHHHHHHHHHHcCCC
Q psy12350 1019 FDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1019 ~e~qa~~~a~~l~g~~ 1034 (1129)
+..||+.+|+.+.|+.
T Consensus 307 A~~qg~~aa~~i~g~~ 322 (415)
T 3lxd_A 307 ANDMATAAAKDICGAP 322 (415)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhcCCC
Confidence 9999999999999864
No 144
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=99.75 E-value=3e-19 Score=212.48 Aligned_cols=276 Identities=16% Similarity=0.161 Sum_probs=165.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc-cCCCCCCCCCCCCccccc-------cCc---cc--cc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL-YTEHIGCDQYGLPVHSSM-------YKS---LK--TN 806 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~-~~~~~g~~~~g~p~~~~~-------y~~---~~--~~ 806 (1129)
-+++|||+|++|+++|..|++.++..+|+|||+++.++..-. ...+.+. ..+..... +.. +. .+
T Consensus 4 ~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~~~~~gl~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (472)
T 3iwa_A 4 KHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRISYGGCGIPYYVSG---EVSNIESLQATPYNVVRDPEFFRINKD 80 (472)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC----------------------------------------------
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcccccccccchhhcC---CCCchHHhccccchhccCHHHHhhhcC
Confidence 468999999999999999999944499999999987641100 0000000 00000000 000 00 00
Q ss_pred ----ccccccccc--C--CCCCC-CCCC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCC
Q psy12350 807 ----LPKDLMELC--G--YGHKG-NADK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFA 868 (1129)
Q Consensus 807 ----~~~~~~~~~--~--~~~~~-~~~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~ 868 (1129)
......... . +.... .... .+.....++.+|+.|+.|++||.+. ..+++...+.+.. ...
T Consensus 81 i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~--~~v~~~~~~~~~~~l~~~l~~~~ 158 (472)
T 3iwa_A 81 VEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDL--AGVTPVTNLDEAEFVQHAISAGE 158 (472)
T ss_dssp CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTS--BTEEECCSHHHHHHHHHHCCTTS
T ss_pred cEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCC--CCEEEeCCHHHHHHHHHHhhcCC
Confidence 000000000 0 00000 0000 1222333445999999999999862 3455544332211 134
Q ss_pred CCeEEEEcCCccHHHHHHHHHhc-CCEEEEEecCCCCcc-c-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATT-GKQAVVVGSGQSGLD-I-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~-~~~V~vv~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
+|+|+|||+|.+|+|+|..+++. +.+|+++++.+..++ . .+.+.....+.+. ..+|+++.+ |+
T Consensus 159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~ 226 (472)
T 3iwa_A 159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLE------------KNDVVVHTGEKVV 226 (472)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHH------------HTTCEEECSCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHH------------hcCCEEEeCCEEE
Confidence 79999999999999999999999 999999998776554 2 2222221111110 125666654 88
Q ss_pred EEeC-Cc---EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc------
Q psy12350 944 ELTP-TG---VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------ 1013 (1129)
Q Consensus 944 ~v~~-~~---V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------ 1013 (1129)
+++. ++ +++.||+++++|.||+|||++|+.+++.. .|+++++++...+..+ +.++.||||++|++...
T Consensus 227 ~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~l~~~-~gl~~~~~g~i~vd~~-~~t~~~~Iya~GD~~~~~~~~~g 304 (472)
T 3iwa_A 227 RLEGENGKVARVITDKRTLDADLVILAAGVSPNTQLARD-AGLELDPRGAIIVDTR-MRTSDPDIFAGGDCVTIPNLVTG 304 (472)
T ss_dssp EEEESSSBEEEEEESSCEEECSEEEECSCEEECCHHHHH-HTCCBCTTCCEECCTT-CBCSSTTEEECGGGEEEEBTTTS
T ss_pred EEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHHHHHh-CCccCCCCCCEEECCC-cccCCCCEEEeccceecccccCC
Confidence 8865 33 67889999999999999999999776543 6777766554333333 34589999999998621
Q ss_pred -----chhHHHHHHHHHHHHHHcCCC
Q psy12350 1014 -----LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1014 -----~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
...+.+..||+.+|+.+.|..
T Consensus 305 ~~~~~~~~~~A~~~g~~aa~~i~g~~ 330 (472)
T 3iwa_A 305 KPGFFPLGSMANRQGRVIGTNLADGD 330 (472)
T ss_dssp SEECCCCTTHHHHHHHHHHHHHTTCC
T ss_pred ceeecchHHHHHHHHHHHHHHhcCCC
Confidence 245789999999999999853
No 145
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=99.75 E-value=3.2e-19 Score=209.78 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=76.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+++|+||||||||++||..|++.+++++|+|||+.+.+||.|.+.-. +
T Consensus 5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~-----------------------------p-- 53 (460)
T 1cjc_A 5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVA-----------------------------P-- 53 (460)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSC-----------------------------T--
T ss_pred CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccC-----------------------------C--
Confidence 357999999999999999999996555999999999999998874100 1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
.++...++..++.++++++++ .+++++.|. + .+++ .. ....|| +||+|
T Consensus 54 --------~~~~~~~~~~~~~~~~~~~gv--~~~~~~~v~---~--------~V~~---~~---~~~~~d-----~lVlA 101 (460)
T 1cjc_A 54 --------DHPEVKNVINTFTQTARSDRC--AFYGNVEVG---R--------DVTV---QE---LQDAYH-----AVVLS 101 (460)
T ss_dssp --------TCGGGGGHHHHHHHHHTSTTE--EEEBSCCBT---T--------TBCH---HH---HHHHSS-----EEEEC
T ss_pred --------CCccHHHHHHHHHHHHHhCCc--EEEeeeEEe---e--------EEEe---cc---ceEEcC-----EEEEe
Confidence 112233567778888888766 677776652 1 1111 11 124689 99999
Q ss_pred cccCCCC-Cccccccc
Q psy12350 168 QGHVTLP-SKAEMLAD 182 (1129)
Q Consensus 168 tG~~~~p-~~p~i~g~ 182 (1129)
|| +.| ..|++||.
T Consensus 102 tG--s~~~~~~~ipG~ 115 (460)
T 1cjc_A 102 YG--AEDHQALDIPGE 115 (460)
T ss_dssp CC--CCEECCCCCTTT
T ss_pred cC--cCCCCCCCCCCC
Confidence 99 554 67778773
No 146
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=99.75 E-value=4.5e-20 Score=212.11 Aligned_cols=261 Identities=12% Similarity=0.091 Sum_probs=162.0
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc-ccCC-CCCCCCCCCCccccccCcccc-----cc---
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW-LYTE-HIGCDQYGLPVHSSMYKSLKT-----NL--- 807 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w-~~~~-~~g~~~~g~p~~~~~y~~~~~-----~~--- 807 (1129)
..-.++|||+|++|+++|..|...+ .+|+|||+++..+..- .... ..+. .+ ...++..... +.
T Consensus 8 ~~~~~vIvGgG~AGl~aA~~L~~~~--~~itlie~~~~~~y~~~~l~~~l~g~----~~-~~~l~~~~~~~~~~~~i~~~ 80 (385)
T 3klj_A 8 KSTKILILGAGPAGFSAAKAALGKC--DDITMINSEKYLPYYRPRLNEIIAKN----KS-IDDILIKKNDWYEKNNIKVI 80 (385)
T ss_dssp CBCSEEEECCSHHHHHHHHHHTTTC--SCEEEECSSSSCCBCGGGHHHHHHSC----CC-GGGTBSSCHHHHHHTTCEEE
T ss_pred CCCCEEEEcCcHHHHHHHHHHhCCC--CEEEEEECCCCCCcccChhhHHHcCC----CC-HHHccCCCHHHHHHCCCEEE
Confidence 3456899999999999999995555 9999999998765200 0000 0000 00 0000000000 00
Q ss_pred -cccccccc--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCC-----CCeEEEEcCCc
Q psy12350 808 -PKDLMELC--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFA-----GKQAVVVGSGQ 879 (1129)
Q Consensus 808 -~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~-----gk~VvVVG~G~ 879 (1129)
........ ...+.......+....-++.+|+.|+.|++||.+ .+++...+.+...++ +|+|+|||+|.
T Consensus 81 ~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~----~v~~~~~~~d~~~l~~~l~~~~~vvVIGgG~ 156 (385)
T 3klj_A 81 TSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHAD----EIFSLYSYDDALKIKDECKNKGKAFIIGGGI 156 (385)
T ss_dssp CSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCS----CEECCSSHHHHHHHHHHHHHHSCEEEECCSH
T ss_pred eCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCC----CeEEeCCHHHHHHHHHHhhcCCeEEEECCCH
Confidence 00000000 0000000011222334445599999999999986 455555444333232 79999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEecCC
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRFQDG 955 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG 955 (1129)
+|+|+|..|++.|.+||++++.+..++ +.+.......+. +. ..+|+++.+ ++++ |
T Consensus 157 ~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~---------l~---~~gV~~~~~~~v~~i---------g 215 (385)
T 3klj_A 157 LGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDK---------LD---RLGIKIYTNSNFEEM---------G 215 (385)
T ss_dssp HHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHH---------HH---TTTCEEECSCCGGGC---------H
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHH---------HH---hCCCEEEeCCEEEEc---------C
Confidence 999999999999999999998776554 222222222111 10 125666543 4444 6
Q ss_pred cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc-----cchhHHHHHHHHHHHHHH
Q psy12350 956 SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH-----TLLFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 956 ~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~-----~~~~~~~e~qa~~~a~~l 1030 (1129)
+++++|.||+|||++|+.+++.. .|+..++. + .+.. .+.++.||||++|++.. ...+..+..||+.+|+.+
T Consensus 216 ~~~~~D~vv~a~G~~p~~~~~~~-~gl~~~~g-i-~vd~-~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i 291 (385)
T 3klj_A 216 DLIRSSCVITAVGVKPNLDFIKD-TEIASKRG-I-LVND-HMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGLNA 291 (385)
T ss_dssp HHHHHSEEEECCCEEECCGGGTT-SCCCBSSS-E-EECT-TCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHHHH
T ss_pred eEEecCeEEECcCcccChhhhhh-cCCCcCCC-E-EECC-CcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHHHh
Confidence 77899999999999999888765 67777643 2 2322 23458999999999875 346789999999999999
Q ss_pred cCCC
Q psy12350 1031 QGHI 1034 (1129)
Q Consensus 1031 ~g~~ 1034 (1129)
.|..
T Consensus 292 ~g~~ 295 (385)
T 3klj_A 292 CGED 295 (385)
T ss_dssp TTCC
T ss_pred cCCC
Confidence 9864
No 147
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=99.75 E-value=3.6e-19 Score=210.88 Aligned_cols=272 Identities=20% Similarity=0.238 Sum_probs=173.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCc-cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPV-HSSM 799 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~-~~~~ 799 (1129)
.+++|||+|++|+++|..|++.| .+|+|+|+++ +||+|... ||-+ +|++. ....
T Consensus 7 ~dvvIIG~G~aG~~aA~~l~~~g--~~V~lie~~~-~GG~~~~~---g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 80 (464)
T 2eq6_A 7 YDLIVIGTGPGGYHAAIRAAQLG--LKVLAVEAGE-VGGVCLNV---GCIPTKALLHAAETLHHLKVAEGFGLKAKPELD 80 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSC-TTHHHHHT---SHHHHHHHHHHHHHHHHHHHHGGGTEECCCEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCC-CCCCCCCc---ChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcC
Confidence 46899999999999999999999 9999999977 99999742 2210 01100 0000
Q ss_pred cCcccccc----------ccccccccCCCCCC-------CC-----CCCCCChhhhhhccCCCCCCC-CCCCCCCCCcEE
Q psy12350 800 YKSLKTNL----------PKDLMELCGYGHKG-------NA-----DKSYIGAKDVLENYNHPIYPE-FKGKDMCQIPIL 856 (1129)
Q Consensus 800 y~~~~~~~----------~~~~~~~~~~~~~~-------~~-----~~~~~~~~~v~~~~~~P~~P~-i~G~~~f~g~~~ 856 (1129)
+..+.... ......-.+..+-. .. ...+....-++.+|+.|+.|+ ++| + +.++
T Consensus 81 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs~p~~p~gi~~-~---~~v~ 156 (464)
T 2eq6_A 81 LKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPLELKGFPF-G---EDVW 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEECCBTTBCC-S---SSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCCCCCCCCCCCC-C---CcEE
Confidence 00000000 00000000000000 00 000111222333999999987 776 2 2578
Q ss_pred eeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCC
Q psy12350 857 HSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNN 935 (1129)
Q Consensus 857 hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 935 (1129)
++.++.+..+..+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+
T Consensus 157 ~~~~~~~l~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~---~~g 224 (464)
T 2eq6_A 157 DSTRALKVEEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRA---------LE---KEG 224 (464)
T ss_dssp CHHHHTCGGGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHH---------HH---HTT
T ss_pred cHHHHHhhhhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHH---------HH---hcC
Confidence 887776655545799999999999999999999999999999987765432 12222111111 11 125
Q ss_pred eEEcCC--eeEEeCC--c--EEec-C--Cc--EeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCCCC
Q psy12350 936 VVLKPD--VAELTPT--G--VRFQ-D--GS--YEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPT 1003 (1129)
Q Consensus 936 V~~~~~--i~~v~~~--~--V~~~-d--G~--~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~ 1003 (1129)
|+++.+ +.+++.+ + |++. + |+ ++++|.||+|+|++|+.+++. +..|+.+++++...+..+ +.++.||
T Consensus 225 V~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~-~~t~~~~ 303 (464)
T 2eq6_A 225 IRVRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNAR-METSVPG 303 (464)
T ss_dssp CEEECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTT-CBCSSTT
T ss_pred CEEEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCC-cccCCCC
Confidence 776655 7777542 2 5665 7 87 789999999999999988753 335677755443334333 3468999
Q ss_pred cEEEcccccc-chhHHHHHHHHHHHHHHcCCC
Q psy12350 1004 MFILGVPRHT-LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1004 l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
||++|++... ...+.+..||+.+|..+.|..
T Consensus 304 Iya~GD~~~~~~l~~~A~~~g~~aa~~i~g~~ 335 (464)
T 2eq6_A 304 VYAIGDAARPPLLAHKAMREGLIAAENAAGKD 335 (464)
T ss_dssp EEECGGGTCSSCCHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEeccCCCcccHHHHHHHHHHHHHHhcCCC
Confidence 9999999764 356889999999999998753
No 148
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=99.75 E-value=5.8e-19 Score=210.45 Aligned_cols=271 Identities=15% Similarity=0.184 Sum_probs=172.6
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC--------------------CCCCCccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD--------------------QYGLPVHS-- 797 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~--------------------~~g~p~~~-- 797 (1129)
.+++|||+|++|+++|..|++.| ++|+|+|+++.+||+|... ||. .+|++...
T Consensus 6 ~dVvIIGgG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~---g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~ 80 (478)
T 1v59_A 6 HDVVIIGGGPAGYVAAIKAAQLG--FNTACVEKRGKLGGTCLNV---GCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDI 80 (478)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCE
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCcCCcccee---ccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence 47899999999999999999999 9999999999999998642 210 01111100
Q ss_pred -cccCcc-------------------cc-cc--ccccccccC---CCCCCCCC--CC------CCChhhhhhccCCCCCC
Q psy12350 798 -SMYKSL-------------------KT-NL--PKDLMELCG---YGHKGNAD--KS------YIGAKDVLENYNHPIYP 843 (1129)
Q Consensus 798 -~~y~~~-------------------~~-~~--~~~~~~~~~---~~~~~~~~--~~------~~~~~~v~~~~~~P~~P 843 (1129)
..+..+ .. +. -.....+.+ +....... .. +.....++.+|+.|.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~-- 158 (478)
T 1v59_A 81 KINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT-- 158 (478)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC--
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC--
Confidence 000000 00 00 000000000 00000000 11 222233344888883
Q ss_pred CCCCCCCCCC-cEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEe
Q psy12350 844 EFKGKDMCQI-PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLS 921 (1129)
Q Consensus 844 ~i~G~~~f~g-~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~ 921 (1129)
.+||.+ +.+ .++|+.++..... .+|+|+|||+|.+|+|+|..|++.|.+||++++.+..++. .+.+.....+.+
T Consensus 159 ~~~g~~-~~~~~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l-- 234 (478)
T 1v59_A 159 PFPGIE-IDEEKIVSSTGALSLKE-IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFL-- 234 (478)
T ss_dssp CCTTCC-CCSSSEECHHHHTTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHH--
T ss_pred CCCCCC-CCCceEEcHHHHHhhhc-cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHHHH--
Confidence 567765 344 5777777665544 3799999999999999999999999999999987765542 222222111111
Q ss_pred cCCccccccCCCCCeEEcCC--eeEEeC--C----cEEec-----CCcEeeccEEEEccCccCcCC--CCCCCCCeeecC
Q psy12350 922 HHSERVTSLCLPNNVVLKPD--VAELTP--T----GVRFQ-----DGSYEQVDIILCCTGYSNHYP--FLHESCGIKVVN 986 (1129)
Q Consensus 922 ~~~~~~~~~~~~~~V~~~~~--i~~v~~--~----~V~~~-----dG~~~~~D~VI~aTG~~~~~~--fl~~~~g~~~~~ 986 (1129)
. ..+|+++.+ |.+++. + .|.+. +|+++++|.||+|+|++|+.+ ++.. .|+++++
T Consensus 235 -------~---~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~-~g~~~~~ 303 (478)
T 1v59_A 235 -------K---KQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEK-IGLEVDK 303 (478)
T ss_dssp -------H---HTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTT-TTCCBCT
T ss_pred -------H---HCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchh-cCceeCC
Confidence 0 125677654 777764 2 25555 456789999999999999987 4544 7888775
Q ss_pred CcccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 987 KNVQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 987 ~~~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
++...+..+ +.++.||||++|++... ...+.+..||+.+|+.+.|.
T Consensus 304 ~G~i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 350 (478)
T 1v59_A 304 RGRLVIDDQ-FNSKFPHIKVVGDVTFGPMLAHKAEEEGIAAVEMLKTG 350 (478)
T ss_dssp TSCBCCCTT-SBCSSTTEEECGGGSSSCCCHHHHHHHHHHHHHHHHHS
T ss_pred CCCEeECcC-CccCCCCEEEeeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 553344443 34689999999999764 35689999999999999864
No 149
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*
Probab=99.75 E-value=1e-18 Score=207.50 Aligned_cols=271 Identities=15% Similarity=0.183 Sum_probs=173.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CC-CCCcccc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QY-GLPVHSS- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~-g~p~~~~- 798 (1129)
.+++|||+|++|+++|.+|++.| .+|+|||++ .+||+|.+. ||- .+ |++....
T Consensus 5 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~GG~~~~~---g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (467)
T 1zk7_A 5 VQVAVIGSGGAAMAAALKAVEQG--AQVTLIERG-TIGGTCVNV---GCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT 78 (467)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEEESS-STTHHHHHH---SHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CEEEEEeCC-CCCccccCC---CccchHHHHHHHHHHHHHhhhhhcCCccCCCCc
Confidence 46899999999999999999999 999999997 799999732 220 00 1211000
Q ss_pred -ccCccccc------------cccccccccCCCC--------CCC-------CC--CCCCChhhhhhccCCCCCCCCCCC
Q psy12350 799 -MYKSLKTN------------LPKDLMELCGYGH--------KGN-------AD--KSYIGAKDVLENYNHPIYPEFKGK 848 (1129)
Q Consensus 799 -~y~~~~~~------------~~~~~~~~~~~~~--------~~~-------~~--~~~~~~~~v~~~~~~P~~P~i~G~ 848 (1129)
.+..+... ....+....+..+ ... .. ..+.....++.+|+.|+.|++||+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~G~ 158 (467)
T 1zk7_A 79 IDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASPAVPPIPGL 158 (467)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEECCCCCTTT
T ss_pred cCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCCCC
Confidence 00000000 0000000000000 000 00 112222334449999999999998
Q ss_pred CCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCcccc
Q psy12350 849 DMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVT 928 (1129)
Q Consensus 849 ~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 928 (1129)
+.+ .++++.+..+... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..+++.+.+.....+.+.
T Consensus 159 ~~~--~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~-------- 227 (467)
T 1zk7_A 159 KES--PYWTSTEALASDT-IPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFR-------- 227 (467)
T ss_dssp TTS--CCBCHHHHHHCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTSCHHHHHHHHHHHH--------
T ss_pred CcC--ceecHHHHhcccc-cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCCCHHHHHHHHHHHH--------
Confidence 653 3456555544333 48999999999999999999999999999999887666533322222211111
Q ss_pred ccCCCCCeEEcCC--eeEEeCCc----EEecCCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCC
Q psy12350 929 SLCLPNNVVLKPD--VAELTPTG----VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 929 ~~~~~~~V~~~~~--i~~v~~~~----V~~~dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
..+|+++.+ |.+++.++ |.++ +.++++|.||+|||++|+.+++. +..|+++++++...+..+ +.++.
T Consensus 228 ----~~Gv~i~~~~~v~~i~~~~~~~~v~~~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~-~~t~~ 301 (467)
T 1zk7_A 228 ----AEGIEVLEHTQASQVAHMDGEFVLTTT-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQG-MRTSN 301 (467)
T ss_dssp ----HTTCEEETTCCEEEEEEETTEEEEEET-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTT-CBCSS
T ss_pred ----hCCCEEEcCCEEEEEEEeCCEEEEEEC-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCC-cccCC
Confidence 125666653 77775422 4554 56789999999999999987653 346777765553334333 34689
Q ss_pred CCcEEEccccccc-hhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHTL-LFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~~-~~~~~e~qa~~~a~~l~g~ 1033 (1129)
|+||++|++.... ..+.+..||+.+|..+.|.
T Consensus 302 ~~iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 334 (467)
T 1zk7_A 302 PNIYAAGDCTDQPQFVYVAAAAGTRAAINMTGG 334 (467)
T ss_dssp TTEEECSTTBSSCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 9999999987653 5688999999999998764
No 150
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=99.75 E-value=5.6e-19 Score=209.61 Aligned_cols=270 Identities=15% Similarity=0.225 Sum_probs=172.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCC--------------------CCCCCCcc-cc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGC--------------------DQYGLPVH-SS 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~--------------------~~~g~p~~-~~ 798 (1129)
.+++|||+|++|+++|..|++.| ++|+|+|++ .+||+|... +| ..+|++.. ..
T Consensus 4 ~dvvIIGaG~aGl~aA~~l~~~G--~~V~liE~~-~~gG~~~~~---g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~ 77 (464)
T 2a8x_A 4 YDVVVLGAGPGGYVAAIRAAQLG--LSTAIVEPK-YWGGVCLNV---GCIPSKALLRNAELVHIFTKDAKAFGISGEVTF 77 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSS-CTTHHHHHH---SHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCC-CCCCccccc---CchhhHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence 46899999999999999999999 999999997 799998632 11 00111100 00
Q ss_pred ccCcc-------------------cc-ccc--cccccccC---CCCCCCCC--CCCCChhhhhhccCCCCCCCCCCCCCC
Q psy12350 799 MYKSL-------------------KT-NLP--KDLMELCG---YGHKGNAD--KSYIGAKDVLENYNHPIYPEFKGKDMC 851 (1129)
Q Consensus 799 ~y~~~-------------------~~-~~~--~~~~~~~~---~~~~~~~~--~~~~~~~~v~~~~~~P~~P~i~G~~~f 851 (1129)
.+..+ .. +.. .....+.+ ........ ..+.....++.+|+.|+.|+++|.+.
T Consensus 78 ~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~~- 156 (464)
T 2a8x_A 78 DYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLSA- 156 (464)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCBT-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCCc-
Confidence 00000 00 000 00000000 00000000 01111222334999999999999764
Q ss_pred CCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCcccccc
Q psy12350 852 QIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSL 930 (1129)
Q Consensus 852 ~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 930 (1129)
.++++.+...... .+|+|+|||+|.+|+|+|..|++.|.+||++++.+..++. .+.+.....+.+.
T Consensus 157 --~~~~~~~~~~~~~-~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~---------- 223 (464)
T 2a8x_A 157 --NVVTYEEQILSRE-LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFK---------- 223 (464)
T ss_dssp --TEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHH----------
T ss_pred --eEEecHHHhhccc-cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHH----------
Confidence 3777766554433 4799999999999999999999999999999988765542 2222221111110
Q ss_pred CCCCCeEEcCC--eeEEeCCc----EEec-CC--cEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecC
Q psy12350 931 CLPNNVVLKPD--VAELTPTG----VRFQ-DG--SYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIE 1000 (1129)
Q Consensus 931 ~~~~~V~~~~~--i~~v~~~~----V~~~-dG--~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~ 1000 (1129)
..+|+++.+ +.++++++ +.+. +| +++++|.||+|||++|+.++|. +..|+.+++++...+..+ +.++
T Consensus 224 --~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~-~~t~ 300 (464)
T 2a8x_A 224 --KLGVTILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDY-MRTN 300 (464)
T ss_dssp --HHTCEEECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTT-SBCS
T ss_pred --HcCCEEEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcC-CccC
Confidence 115666654 77776432 4454 67 5789999999999999988753 335777765443334433 3468
Q ss_pred CCCcEEEcccccc-chhHHHHHHHHHHHHHHcC
Q psy12350 1001 HPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 1001 ~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g 1032 (1129)
.||||++|++... ...+.+..||+.+|+.+.|
T Consensus 301 ~~~IyA~GD~~~~~~~~~~A~~~g~~aa~~i~g 333 (464)
T 2a8x_A 301 VGHIYAIGDVNGLLQLAHVAEAQGVVAAETIAG 333 (464)
T ss_dssp STTEEECGGGGCSSCSHHHHHHHHHHHHHHHHT
T ss_pred CCCEEEeECcCCCccCHHHHHHHHHHHHHHhcC
Confidence 9999999999764 3568899999999999988
No 151
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=99.75 E-value=6.9e-19 Score=208.24 Aligned_cols=271 Identities=20% Similarity=0.276 Sum_probs=172.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-------------------CCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-------------------YGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-------------------~g~p~~~~-- 798 (1129)
.+++|||+|++|+++|..|++.| ++|+|+|++ .+||+|... +|-+ +|++....
T Consensus 4 ~dvvIIGgG~aGl~aA~~l~~~g--~~V~lie~~-~~gG~~~~~---g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 77 (455)
T 1ebd_A 4 TETLVVGAGPGGYVAAIRAAQLG--QKVTIVEKG-NLGGVCLNV---GCIPSKALISASHRYEQAKHSEEMGIKAENVTI 77 (455)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--CCEEEEESS-CTTHHHHHT---SHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEECC-CCCCcCcCc---CchhhHHHHHHHHHHHHHHHHHhcCcccCCCcc
Confidence 46899999999999999999999 999999997 899998632 2210 01110000
Q ss_pred ccCccccc-------cc---cccccccCCC--------CCCC-------CC-CCCCChhhhhhccCCCCCCCCCCCCCCC
Q psy12350 799 MYKSLKTN-------LP---KDLMELCGYG--------HKGN-------AD-KSYIGAKDVLENYNHPIYPEFKGKDMCQ 852 (1129)
Q Consensus 799 ~y~~~~~~-------~~---~~~~~~~~~~--------~~~~-------~~-~~~~~~~~v~~~~~~P~~P~i~G~~~f~ 852 (1129)
-+..+... .. .....-.... .... .. ..+....-++.+|+.|..|+++|.+.
T Consensus 78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~-- 155 (455)
T 1ebd_A 78 DFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSN-- 155 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCS--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccc--
Confidence 00000000 00 0000000000 0000 00 01112223334999999999999754
Q ss_pred CcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccC
Q psy12350 853 IPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLC 931 (1129)
Q Consensus 853 g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1129)
.++++.+...... .+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +.
T Consensus 156 -~v~~~~~~~~~~~-~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~-- 222 (455)
T 1ebd_A 156 -RILDSTGALNLGE-VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKR---------LK-- 222 (455)
T ss_dssp -SEECHHHHHTCSS-CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHH---------HH--
T ss_pred -eEecHHHHhcccc-CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHH---------HH--
Confidence 4777766554433 4799999999999999999999999999999987665432 22221111111 11
Q ss_pred CCCCeEEcCC--eeEEeCC--c--EEec---CCcEeeccEEEEccCccCcCCCCC-CCCCeeecCCcccccccceeecCC
Q psy12350 932 LPNNVVLKPD--VAELTPT--G--VRFQ---DGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 932 ~~~~V~~~~~--i~~v~~~--~--V~~~---dG~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
..+|+++.+ |.+++++ + +.+. +|+++++|.||+|+|++|+.++|. +..|+++++++...+..+ +.++.
T Consensus 223 -~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~-~~t~~ 300 (455)
T 1ebd_A 223 -KKGVEVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQ-CRTSV 300 (455)
T ss_dssp -HTTCEEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTT-CBCSS
T ss_pred -HCCCEEEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCC-cccCC
Confidence 125666554 7777642 2 3443 456789999999999999988853 447888776543344433 34689
Q ss_pred CCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||||++|++... ...+.+..||+.+|+.+.|.
T Consensus 301 ~~Iya~GD~~~~~~~~~~A~~~g~~aa~~i~~~ 333 (455)
T 1ebd_A 301 PNIFAIGDIVPGPALAHKASYEGKVAAEAIAGH 333 (455)
T ss_dssp TTEEECGGGSSSCCCHHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEeccCCCcccHHHHHHHHHHHHHHHcCC
Confidence 999999999765 34688999999999999875
No 152
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.74 E-value=3e-19 Score=222.30 Aligned_cols=261 Identities=13% Similarity=0.138 Sum_probs=159.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||||||+||..|++ .|++|+|||+++.+||+|.+.. .++
T Consensus 388 ~~~~VvIIGgGpAGl~aA~~L~~--~G~~Vtlie~~~~~GG~~~~~~--------------~~p---------------- 435 (729)
T 1o94_A 388 NKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIGGHLNQVA--------------ALP---------------- 435 (729)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTHHHHT--------------TST----------------
T ss_pred CCceEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCeeeecc--------------cCC----------------
Confidence 45799999999999999999999 5699999999999999998411 000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcC----CcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeE
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFN----LRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFF 163 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~----~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 163 (1129)
.+.....+.+|++..++.+. ....++.++.|+ ........|| +
T Consensus 436 --------g~~~~~~~~~~~~~~i~~~~~~~~~~v~i~~~~~v~--------------------~~~~~~~~~d-----~ 482 (729)
T 1o94_A 436 --------GLGEWSYHRDYRETQITKLLKKNKESQLALGQKPMT--------------------ADDVLQYGAD-----K 482 (729)
T ss_dssp --------TCGGGHHHHHHHHHHHHHHHHHSTTCEEECSCCCCC--------------------HHHHHTSCCS-----E
T ss_pred --------ChHHHHHHHHHHHHHHHHhhcccCCceEEEeCeEEe--------------------hhhccccCCC-----E
Confidence 01122355666665555430 001222222211 1111234689 9
Q ss_pred EEEecccCCC------CCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccc
Q psy12350 164 LQLMQGHVTL------PSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFA 237 (1129)
Q Consensus 164 lvvAtG~~~~------p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 237 (1129)
||||||.... |..|++||..+. . .+.++.. .+.
T Consensus 483 vviAtG~~~~~~~~~~p~~~~ipG~~~~-~---------------~~v~~~~-------------------------~~l 521 (729)
T 1o94_A 483 VIIATGARWNTDGTNCLTHDPIPGADAS-L---------------PDQLTPE-------------------------QVM 521 (729)
T ss_dssp EEECCCEEECSSCCCTTTSSCCTTCCTT-S---------------TTEECHH-------------------------HHH
T ss_pred EEEcCCCCcccccccCccCCCCCCcccc-C---------------CCEEEHH-------------------------HHh
Confidence 9999994321 566777663200 0 0000000 000
Q ss_pred ccccccccccccceeEeeceeeeecCCCC--CCCCcccchhhhcccccEEEEccccCCcccc-cCC------------C-
Q psy12350 238 RCSEDFTEFRKDKYKIINEKAFVRDPGAA--NGPSGLDITHDISTEATTVFLSHHSEHVKKL-RFP------------N- 301 (1129)
Q Consensus 238 ~~~~~~~~~~~~~~~vi~~~~~v~~~~vG--gG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-~~~------------~- 301 (1129)
. .. ...+++++| || ||++|+|+|..|++.|.+||++++.+ +++. ..+ .
T Consensus 522 ~-~~---~~~gk~VvV-----------IG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~G 585 (729)
T 1o94_A 522 D-GK---KKIGKRVVI-----------LNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLEYPNMMRRLHELH 585 (729)
T ss_dssp H-CC---SCCCSEEEE-----------EECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTCHHHHHHHHHHTT
T ss_pred c-CC---CCCCCeEEE-----------EcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccccccHHHHHHHHHhCC
Confidence 0 00 011334444 78 99999999999999999999999987 4331 011 1
Q ss_pred -CeEEcCCceEEcCCceEEc----CC-CE------------------eecCEEEEcccccccCCCCCCCCCeEeecCccc
Q psy12350 302 -NVVKKPDIAELTPTGVRFQ----DG-SY------------------EQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQ 357 (1129)
Q Consensus 302 -~i~~~~~v~~~~~~~v~~~----dg-~~------------------~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~ 357 (1129)
++.....|++++++++.+. ++ ++ +++|.||+|+|++++..++.. +...+
T Consensus 586 V~i~~~~~v~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~~~v------ 658 (729)
T 1o94_A 586 VEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LKARE------ 658 (729)
T ss_dssp CEEECSEEEEEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HHHTG------
T ss_pred CEEEcCcEEEEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hhhhc------
Confidence 3455667888887765542 33 22 899999999999999887642 21111
Q ss_pred ccccccccCCCCCeEEeccccccc-ccccccceeeehhhccccc
Q psy12350 358 PLYKHLINIEHPSMCIIGYTYRYP-FLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 358 ~l~~~~~~~~~p~l~~~G~~~~~~-~~~~~~~~~~~a~~~~~~~ 400 (1129)
+-+. .++.|++|.+|...... ...+..||+.+|.++.+.+
T Consensus 659 d~~~---~t~~~~VyAiGD~~~~~~~~~A~~~G~~aA~~i~~~l 699 (729)
T 1o94_A 659 SEWA---ENDIKGIYLIGDAEAPRLIADATFTGHRVAREIEEAN 699 (729)
T ss_dssp GGTG---GGTCCEEEECGGGTSCCCHHHHHHHHHHHHHTTTSSC
T ss_pred cccc---ccCCCCeEEEeCccchhhHHHHHHHHHHHHHHhhhhc
Confidence 1222 24678999999875432 2334488888888886543
No 153
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.74 E-value=1.8e-18 Score=221.01 Aligned_cols=284 Identities=12% Similarity=0.106 Sum_probs=176.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||||||+||.+|++ .|++|+|||+++.+||+|.+. ++.. +..
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~--~G~~V~lie~~~~~GG~~~~~------------------------~k~~--i~~-- 177 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASR--SGARVMLLDERAEAGGTLLDT------------------------AGEQ--IDG-- 177 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSGGGGGS------------------------SCCE--ETT--
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCceeccC------------------------Cccc--cCC--
Confidence 4789999999999999999999 569999999999999998830 0000 000
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeecccccc------CCCCceEEec-cccCccceEEeccee
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLIN------IEHPSMCIIG-IPRDTVGFYLFDLQV 160 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~------~~~~~~~~~~-~~~~~~~~~~~d~~~ 160 (1129)
. ...++...+.+...++ ++ .++++++|..+...... .+.+.+.... ...+....+.||
T Consensus 178 --------~-~~~~~~~~~~~~l~~~~~v--~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d--- 243 (965)
T 2gag_A 178 --------M-DSSAWIEQVTSELAEAEET--THLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAK--- 243 (965)
T ss_dssp --------E-EHHHHHHHHHHHHHHSTTE--EEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEE---
T ss_pred --------C-CHHHHHHHHHHHHhhcCCc--EEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECC---
Confidence 0 1223344433333443 44 67888899887642100 0001110000 000112356788
Q ss_pred eeEEEEecccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccc
Q psy12350 161 RFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCS 240 (1129)
Q Consensus 161 ~~~lvvAtG~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 240 (1129)
+|||||| +.|..|++||... +| .....- +......
T Consensus 244 --~lVlATG--s~p~~~~ipG~~~---~g---------------v~~~~~----------------------~~~~l~~- 278 (965)
T 2gag_A 244 --QVVLATG--AHERPIVFENNDR---PG---------------IMLAGA----------------------VRSYLNR- 278 (965)
T ss_dssp --EEEECCC--EEECCCCCBTCCS---TT---------------EEEHHH----------------------HHHHHHT-
T ss_pred --EEEECCC--CccCCCCCCCCCC---CC---------------EEEhHH----------------------HHHHHHh-
Confidence 9999999 6788888877321 11 111000 0000000
Q ss_pred cccccccccceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccc-----cCCCCeEEcCCceEEcC-
Q psy12350 241 EDFTEFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKL-----RFPNNVVKKPDIAELTP- 314 (1129)
Q Consensus 241 ~~~~~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~-----~~~~~i~~~~~v~~~~~- 314 (1129)
+....++++ +| ||+|++|+|+|..|++.|.+|+++++.+.++.. ...-++.....|+++.+
T Consensus 279 --~~~~~gk~v-------vV----iGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~ 345 (965)
T 2gag_A 279 --YGVRAGARI-------AV----ATTNDSAYELVRELAATGGVVAVIDARSSISAAAAQAVADGVQVISGSVVVDTEAD 345 (965)
T ss_dssp --TCEESCSSE-------EE----EESSTTHHHHHHHHGGGTCCSEEEESCSSCCHHHHHHHHTTCCEEETEEEEEEEEC
T ss_pred --cCCCCCCeE-------EE----EcCCHHHHHHHHHHHHcCCcEEEEECCCccchhHHHHHhCCeEEEeCCEeEEEecc
Confidence 000112334 34 899999999999999999999999998876431 12226677778888865
Q ss_pred -C----ceEEcC-------C--CEeecCEEEEcccccccCCCCCC-CCCeEeecCcccccccccc--cCCCCCeEEeccc
Q psy12350 315 -T----GVRFQD-------G--SYEQVDIILYCTGYTYRYPFLHE-SCGIKVVNKNVQPLYKHLI--NIEHPSMCIIGYT 377 (1129)
Q Consensus 315 -~----~v~~~d-------g--~~~~~D~VI~atG~~~~~~~l~~-~~~~~~~~~~~~~l~~~~~--~~~~p~l~~~G~~ 377 (1129)
+ +|.+++ | +++++|.||+|+|++++..++.. ..++.+++.. +.| ..++|++|.+|..
T Consensus 346 ~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~~g~i~vd~~~------~~~v~~ts~p~IyAaGD~ 419 (965)
T 2gag_A 346 ENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQGKLDWDTTI------HAFVPADAVANQHLAGAM 419 (965)
T ss_dssp TTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHTTCCEEEETTT------TEEEECSCCTTEEECGGG
T ss_pred CCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhCCCcEEEcCcc------cccccCCCCCCEEEEEec
Confidence 3 477765 5 56899999999999999887653 2446665532 111 2578999999987
Q ss_pred ccc-cccccccceeeehhhccccc
Q psy12350 378 YRY-PFLHESCGIKVVNKNVQPLY 400 (1129)
Q Consensus 378 ~~~-~~~~~~~~~~~~a~~~~~~~ 400 (1129)
... ++.....|++.+|.++.+.+
T Consensus 420 a~~~~l~~A~~~G~~aA~~i~~~l 443 (965)
T 2gag_A 420 TGRLDTASALSTGAATGAAAATAA 443 (965)
T ss_dssp GTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHHHHHHHHHHc
Confidence 543 33344578888888877654
No 154
>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*
Probab=99.74 E-value=6.3e-19 Score=209.97 Aligned_cols=271 Identities=16% Similarity=0.193 Sum_probs=174.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCC-------------------CCCCCcccc--
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCD-------------------QYGLPVHSS-- 798 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~-------------------~~g~p~~~~-- 798 (1129)
-+++|||+|++|+++|..|.+.| ++|+|+|+++.+||+|... +|- .+|++....
T Consensus 7 ~dVvIIGaG~aGl~aA~~l~~~G--~~V~liE~~~~~GG~~~~~---g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~ 81 (482)
T 1ojt_A 7 YDVVVLGGGPGGYSAAFAAADEG--LKVAIVERYKTLGGVCLNV---GCIPSKALLHNAAVIDEVRHLAANGIKYPEPEL 81 (482)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSSCSSHHHHHH---SHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCceeee---cccchHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence 46899999999999999999999 9999999999999998632 210 011110000
Q ss_pred ccCcccccc----------ccccccccCCC--------CCCCCC-------------------CCCCChhhhhhccCCCC
Q psy12350 799 MYKSLKTNL----------PKDLMELCGYG--------HKGNAD-------------------KSYIGAKDVLENYNHPI 841 (1129)
Q Consensus 799 ~y~~~~~~~----------~~~~~~~~~~~--------~~~~~~-------------------~~~~~~~~v~~~~~~P~ 841 (1129)
.+..+.... ......-.+.. ...... ..+.....++.+|+.|.
T Consensus 82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~ 161 (482)
T 1ojt_A 82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT 161 (482)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC
Confidence 000000000 00000000000 000000 01111222333899999
Q ss_pred CCC-CCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEE
Q psy12350 842 YPE-FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVF 919 (1129)
Q Consensus 842 ~P~-i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~ 919 (1129)
.|+ ++ .+ ..++++.+..+... .+|+|+|||+|.+|+|+|..|++.|.+||++++.+..++. .+.+.....+.
T Consensus 162 ~~~~i~-~~---~~v~~~~~~~~~~~-~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~- 235 (482)
T 1ojt_A 162 KLPFIP-ED---PRIIDSSGALALKE-VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQ- 235 (482)
T ss_dssp CCSSCC-CC---TTEECHHHHTTCCC-CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHH-
T ss_pred CCCCCC-cc---CcEEcHHHHhcccc-cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHHHHH-
Confidence 887 65 33 25777777655443 3899999999999999999999999999999998766542 22222211111
Q ss_pred EecCCccccccCCCCCeEEcCC--eeEEeCC----cEEecC----CcEeeccEEEEccCccCcCCCCC-CCCCeeecCCc
Q psy12350 920 LSHHSERVTSLCLPNNVVLKPD--VAELTPT----GVRFQD----GSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKN 988 (1129)
Q Consensus 920 ~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~----~V~~~d----G~~~~~D~VI~aTG~~~~~~fl~-~~~g~~~~~~~ 988 (1129)
+. ..+|+++.+ |.+++.+ .|++.| |+++++|.||+|+|++|+.++|. +..|+++++++
T Consensus 236 --------l~---~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G 304 (482)
T 1ojt_A 236 --------NE---YRFDNIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRG 304 (482)
T ss_dssp --------HG---GGEEEEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTS
T ss_pred --------HH---hcCCEEEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCC
Confidence 11 125666654 7777543 267777 77899999999999999988762 44788887655
Q ss_pred ccccccceeecCCCCcEEEcccccc-chhHHHHHHHHHHHHHHcCC
Q psy12350 989 VQPLYKHTINIEHPTMFILGVPRHT-LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 989 ~~~ly~~~~~~~~p~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
...+..+ +.++.||||++|++... ...+.+..||+.+|..+.|.
T Consensus 305 ~i~vd~~-~~t~~~~IyA~GD~~~~~~l~~~A~~~g~~aa~~i~g~ 349 (482)
T 1ojt_A 305 FIEVDKQ-MRTNVPHIYAIGDIVGQPMLAHKAVHEGHVAAENCAGH 349 (482)
T ss_dssp CCCCCTT-SBCSSTTEEECGGGTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CEeeCCC-cccCCCCEEEEEcccCCCccHHHHHHHHHHHHHHHcCC
Confidence 3334333 34689999999999764 45689999999999999875
No 155
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=99.74 E-value=6.1e-19 Score=208.54 Aligned_cols=276 Identities=16% Similarity=0.168 Sum_probs=168.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC-CCCCCCCCCCccccccCcccc-----cc----ccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE-HIGCDQYGLPVHSSMYKSLKT-----NL----PKD 810 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~-~~g~~~~g~p~~~~~y~~~~~-----~~----~~~ 810 (1129)
+++|||+|++|+++|..|.+.++..+|+|+|+++.++.....-. +.+.....++ ...+...+.. +. ...
T Consensus 2 dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~gv~~~~~~~ 80 (452)
T 2cdu_A 2 KVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISFLSCGIALYLGKEIKNND-PRGLFYSSPEELSNLGANVQMRHQ 80 (452)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCBCGGGHHHHHTTCBGGGC-GGGGBSCCHHHHHHTTCEEEESEE
T ss_pred eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCcccccchhhhcCCcccCC-HHHhhhcCHHHHHHcCCEEEeCCE
Confidence 47899999999999999999833399999999886553211000 0000000000 0000000000 00 000
Q ss_pred ccccc--C--CCCCC--CC-CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCC-----CCCeEEEEcCC
Q psy12350 811 LMELC--G--YGHKG--NA-DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPF-----AGKQAVVVGSG 878 (1129)
Q Consensus 811 ~~~~~--~--~~~~~--~~-~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~-----~gk~VvVVG~G 878 (1129)
..... . +.... +. ...+.....++.+|+.|+.|++||.+. ..++++..+.+..++ .+|+|+|||+|
T Consensus 81 v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~vvViGgG 158 (452)
T 2cdu_A 81 VTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDS--SRVYLCKNYNDAKKLFEEAPKAKTITIIGSG 158 (452)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTS--TTEEECSSHHHHHHHHHHGGGCSEEEEECCS
T ss_pred EEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCC--CCEEEeCcHHHHHHHHHHhccCCeEEEECcC
Confidence 00000 0 00000 00 001122233444999999999999863 247776555433222 58999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeC-Cc-E--
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTP-TG-V-- 950 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~-~~-V-- 950 (1129)
.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+.+. ..+|+++. .|++++. ++ +
T Consensus 159 ~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~------------~~Gv~i~~~~~v~~i~~~~~~v~~ 226 (452)
T 2cdu_A 159 YIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYE------------AHGVNLVLGSKVAAFEEVDDEIIT 226 (452)
T ss_dssp HHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHH------------HTTCEEEESSCEEEEEEETTEEEE
T ss_pred HHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHH------------HCCCEEEcCCeeEEEEcCCCeEEE
Confidence 9999999999999999999998776554 22222222211111 12556554 4788764 32 3
Q ss_pred EecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhHHH
Q psy12350 951 RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFNLF 1019 (1129)
Q Consensus 951 ~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~~~ 1019 (1129)
...||+++++|.||+|||++|+.++++. . +++++++...+..+ +.++.||||++|++... ..++.+
T Consensus 227 v~~~g~~i~~D~vv~a~G~~p~~~ll~~-~-l~~~~~G~i~Vd~~-~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A 303 (452)
T 2cdu_A 227 KTLDGKEIKSDIAILCIGFRPNTELLKG-K-VAMLDNGAIITDEY-MHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATNA 303 (452)
T ss_dssp EETTSCEEEESEEEECCCEEECCGGGTT-T-SCBCTTSCBCCCTT-SBCSSTTEEECSTTBCEEETTTTEEECCCCHHHH
T ss_pred EEeCCCEEECCEEEECcCCCCCHHHHHH-h-hhcCCCCCEEECCC-cCcCCCCEEEcceEEEeccccCCCeeecchHHHH
Confidence 2348889999999999999999887765 4 66655543333333 34589999999998753 356899
Q ss_pred HHHHHHHHHHHcCCC
Q psy12350 1020 DLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1020 e~qa~~~a~~l~g~~ 1034 (1129)
..||+.+|+.+.|..
T Consensus 304 ~~~g~~aa~~i~g~~ 318 (452)
T 2cdu_A 304 VRQGRLVGLNLTEDK 318 (452)
T ss_dssp HHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHhCCCC
Confidence 999999999998753
No 156
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Probab=99.73 E-value=4.1e-18 Score=199.67 Aligned_cols=260 Identities=19% Similarity=0.168 Sum_probs=157.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+++.+||+|.+. +|... .-..+.......+..+ +..+
T Consensus 123 ~~V~IIGgGpAGl~aA~~L~~~G--~~V~v~e~~~~~GG~l~~g---------ip~~~-~~~~~~~~~~~~l~~~-gv~~ 189 (456)
T 2vdc_G 123 LSVGVIGAGPAGLAAAEELRAKG--YEVHVYDRYDRMGGLLVYG---------IPGFK-LEKSVVERRVKLLADA-GVIY 189 (456)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSCSTHHHHT---------SCTTT-SCHHHHHHHHHHHHHT-TCEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCC--CeEEEEeccCCCCCeeeec---------CCCcc-CCHHHHHHHHHHHHHC-CcEE
Confidence 46899999999999999999999 9999999999999999853 22110 0000000000000000 1111
Q ss_pred CCCC-C-CC-------CCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC---------CC--------CCCCCCCeE
Q psy12350 820 KGNA-D-KS-------YIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY---------RT--------PEPFAGKQA 872 (1129)
Q Consensus 820 ~~~~-~-~~-------~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~---------~~--------~~~~~gk~V 872 (1129)
..+. . .. ......++.+|+. |+.|++||.+ .. .++++.+| .+ .....||+|
T Consensus 190 ~~~~~v~~~v~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~-~~-gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~V 267 (456)
T 2vdc_G 190 HPNFEVGRDASLPELRRKHVAVLVATGVYKARDIKAPGSG-LG-NIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHV 267 (456)
T ss_dssp ETTCCBTTTBCHHHHHSSCSEEEECCCCCEECCTTCSCCT-TT-TEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEE
T ss_pred EeCCEeccEEEhhHhHhhCCEEEEecCCCCCCCCCCCCCc-CC-CcEEHHHHHHHhhhhhcccccccccccccccCCCEE
Confidence 1000 0 00 0111223348875 7888999975 33 35543222 11 123579999
Q ss_pred EEEcCCccHHHHHHHHHhcCC-EEEEEecCCCC-ccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC
Q psy12350 873 VVVGSGQSGLDITLDIATTGK-QAVVVGSGQSG-LDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT 948 (1129)
Q Consensus 873 vVVG~G~Sg~eiA~~la~~~~-~V~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~ 948 (1129)
+|||+|++|+|+|..+.+.|. +|+++.+.... ++........++ ..+|++... +.++.++
T Consensus 268 vVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~~~~~----------------~~Gv~~~~~~~~~~i~~~ 331 (456)
T 2vdc_G 268 VVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREVAHAE----------------EEGVEFIWQAAPEGFTGD 331 (456)
T ss_dssp EEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHHHHHH----------------HTTCEEECCSSSCCEEEE
T ss_pred EEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHHHHHH----------------HCCCEEEeCCCceEEeCC
Confidence 999999999999999999986 69999886543 222111000000 012222211 2222111
Q ss_pred c----EE------------------ecCC--cEeeccEEEEccCccCcCC--CCCCCCCeeecCCcccccccceeecCCC
Q psy12350 949 G----VR------------------FQDG--SYEQVDIILCCTGYSNHYP--FLHESCGIKVVNKNVQPLYKHTINIEHP 1002 (1129)
Q Consensus 949 ~----V~------------------~~dG--~~~~~D~VI~aTG~~~~~~--fl~~~~g~~~~~~~~~~ly~~~~~~~~p 1002 (1129)
+ |+ ..+| .++++|.||+|+|+.++.. ++.. +++++++++...+...++.++.|
T Consensus 332 g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~-~gl~~~~~G~i~vd~~~~~Ts~~ 410 (456)
T 2vdc_G 332 TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDE-PELKVTRWGTLLVDHRTKMTNMD 410 (456)
T ss_dssp EEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHS-TTSCBCTTSSBCCCTTTCBCSST
T ss_pred CcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhccc-CCeeECCCCCEEECCCCCcCCCC
Confidence 1 11 1134 3579999999999999854 5554 67777766554555544567899
Q ss_pred CcEEEcccccc-chhHHHHHHHHHHHHHHc
Q psy12350 1003 TMFILGVPRHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1003 ~l~~iG~~~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
+||++|++... .....+..|++.+|+.+.
T Consensus 411 ~VfA~GD~~~g~~~v~~A~~~G~~aA~~i~ 440 (456)
T 2vdc_G 411 GVFAAGDIVRGASLVVWAIRDGRDAAEGIH 440 (456)
T ss_dssp TEEECGGGGSSCCSHHHHHHHHHHHHHHHH
T ss_pred CEEEeccccCCchHHHHHHHHHHHHHHHHH
Confidence 99999998754 456788889998887764
No 157
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=99.73 E-value=1.1e-18 Score=201.72 Aligned_cols=269 Identities=14% Similarity=0.147 Sum_probs=167.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGH 819 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~~ 819 (1129)
.+++|||+|++|+++|..|++.|...+|+++|+++ |..|........-..+.. ...+..........-.+..+
T Consensus 5 ~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~--g~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~~ 77 (384)
T 2v3a_A 5 APLVIIGTGLAGYNLAREWRKLDGETPLLMITADD--GRSYSKPMLSTGFSKNKD-----ADGLAMAEPGAMAEQLNARI 77 (384)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC--CCEECGGGGGGTTTTTCC-----HHHHEEECHHHHHHHTTCEE
T ss_pred CcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC--CCccCcccccHHHhCCCC-----HHHhhccCHHHHHHhCCcEE
Confidence 47899999999999999999999667799999875 544431100000000000 00000000000000000000
Q ss_pred C--CC--------C-----CCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-----CCCCCeEEEEcCCc
Q psy12350 820 K--GN--------A-----DKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-----PFAGKQAVVVGSGQ 879 (1129)
Q Consensus 820 ~--~~--------~-----~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-----~~~gk~VvVVG~G~ 879 (1129)
- .. + ...+....-++.+|+.|+.|++||.+. ..++++.++.+.. -..+|+|+|||+|.
T Consensus 78 ~~~~~v~~i~~~~~~v~~~~~~~~~d~lviAtG~~p~~p~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~v~ViGgG~ 155 (384)
T 2v3a_A 78 LTHTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQ--DALYPINDLEDYARFRQAAAGKRRVLLLGAGL 155 (384)
T ss_dssp ECSCCCCEEEGGGTEEEETTEEEECSEEEECCCEEECCCCCBSTTT--TCEEECSSHHHHHHHHHHHTTCCEEEEECCSH
T ss_pred EeCCEEEEEECCCCEEEECCcEEECCEEEEeCCCCcCCCCCCCcCc--CCEEEECCHHHHHHHHHhhccCCeEEEECCCH
Confidence 0 00 0 001112223334999999999999753 3567766553321 12389999999999
Q ss_pred cHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeC--C--cEE
Q psy12350 880 SGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTP--T--GVR 951 (1129)
Q Consensus 880 Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~--~--~V~ 951 (1129)
+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+|+++. .|.+++. + .|+
T Consensus 156 ~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~---------l~---~~gv~i~~~~~v~~i~~~~~~~~v~ 223 (384)
T 2v3a_A 156 IGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAG---------LE---GLGVRFHLGPVLASLKKAGEGLEAH 223 (384)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHH---------HH---TTTCEEEESCCEEEEEEETTEEEEE
T ss_pred HHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHH---------HH---HcCCEEEeCCEEEEEEecCCEEEEE
Confidence 9999999999999999999987655432 11111111111 10 12555554 3777754 2 377
Q ss_pred ecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccc--c---chhHHHHHHHHHH
Q psy12350 952 FQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRH--T---LLFNLFDLQVRLF 1026 (1129)
Q Consensus 952 ~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~--~---~~~~~~e~qa~~~ 1026 (1129)
+.||+++++|.||+|+|++++.+++.. +|+++++ + ..+..+ +.++.||||++|++.. . ..+..+..||+.+
T Consensus 224 ~~~g~~i~~d~vv~a~G~~p~~~l~~~-~g~~~~~-g-i~vd~~-~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~ 299 (384)
T 2v3a_A 224 LSDGEVIPCDLVVSAVGLRPRTELAFA-AGLAVNR-G-IVVDRS-LRTSHANIYALGDCAEVDGLNLLYVMPLMACARAL 299 (384)
T ss_dssp ETTSCEEEESEEEECSCEEECCHHHHH-TTCCBSS-S-EEECTT-CBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHH
T ss_pred ECCCCEEECCEEEECcCCCcCHHHHHH-CCCCCCC-C-EEECCC-CCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHH
Confidence 889999999999999999999776543 6777764 3 334333 4478999999999864 2 2356789999999
Q ss_pred HHHHcCC
Q psy12350 1027 QQLMQGH 1033 (1129)
Q Consensus 1027 a~~l~g~ 1033 (1129)
|+.+.|.
T Consensus 300 a~~i~g~ 306 (384)
T 2v3a_A 300 AQTLAGN 306 (384)
T ss_dssp HHHHTTC
T ss_pred HHHhcCC
Confidence 9999885
No 158
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=99.73 E-value=5.8e-19 Score=215.35 Aligned_cols=275 Identities=15% Similarity=0.163 Sum_probs=168.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc-CCC-CCCCCCCCCccccccCccc-----ccc----cc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY-TEH-IGCDQYGLPVHSSMYKSLK-----TNL----PK 809 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~-~~~-~g~~~~g~p~~~~~y~~~~-----~~~----~~ 809 (1129)
+++|||+|++|+++|..|++.++.++|+|||+++.++..... ..+ .+.. .+.......... .+. ..
T Consensus 3 ~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (565)
T 3ntd_A 3 KILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSFANCGLPYHISGEI---AQRSALVLQTPESFKARFNVEVRVKH 79 (565)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSBCGGGHHHHHTSSS---CCGGGGBCCCHHHHHHHHCCEEETTE
T ss_pred cEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccccccCchHHhcCCc---CChHHhhccCHHHHHHhcCcEEEECC
Confidence 578999999999999999999555999999999877621100 000 0000 000000000000 000 00
Q ss_pred cccccc--C--CCCC---CCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCCCCeEEEE
Q psy12350 810 DLMELC--G--YGHK---GNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFAGKQAVVV 875 (1129)
Q Consensus 810 ~~~~~~--~--~~~~---~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~gk~VvVV 875 (1129)
...... . +... ......+.....++.+|+.|+.|++||.+.. .++++..+.+.. ...+|+|+||
T Consensus 80 ~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~--~v~~~~~~~~~~~l~~~~~~~~~~~vvVi 157 (565)
T 3ntd_A 80 EVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNP--LTHSLRNIPDMDRILQTIQMNNVEHATVV 157 (565)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCST--TEECCSSHHHHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCC--CEEEeCCHHHHHHHHHHHhhCCCCEEEEE
Confidence 000000 0 0000 0000012223344559999999999998642 344444332211 1357899999
Q ss_pred cCCccHHHHHHHHHhcCCEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCCCCCeEEcC--CeeEEeC-----
Q psy12350 876 GSGQSGLDITLDIATTGKQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLKP--DVAELTP----- 947 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~--~i~~v~~----- 947 (1129)
|+|.+|+|+|..|++.|.+|+++++.+..++.. +.+.....+.+. ..+|+++. .+.+++.
T Consensus 158 GgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~~ 225 (565)
T 3ntd_A 158 GGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIR------------DQGVDLRLGTALSEVSYQVQTH 225 (565)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHH------------HTTCEEEETCCEEEEEEECCCC
T ss_pred CCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHH------------HCCCEEEeCCeEEEEecccccc
Confidence 999999999999999999999999877655421 222111111100 11455543 3666643
Q ss_pred ---------------C---cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcc
Q psy12350 948 ---------------T---GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGV 1009 (1129)
Q Consensus 948 ---------------~---~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~ 1009 (1129)
+ .+++.||+++++|.||+|||++|+.+++.. .|+.+++++...+.. .+.++.||||++|+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~l~~~-~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD 303 (565)
T 3ntd_A 226 VASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQLARD-AGLAIGELGGIKVNA-MMQTSDPAIYAVGD 303 (565)
T ss_dssp CCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCHHHHH-HTCCBCTTSSBCCCT-TCBCSSTTEEECGG
T ss_pred ccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchHHHHh-CCcccCCCCCEEECC-CcccCCCCEEEeee
Confidence 2 267789999999999999999999876643 677776655443433 34568999999999
Q ss_pred ccc------c-----chhHHHHHHHHHHHHHHcCCC
Q psy12350 1010 PRH------T-----LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1010 ~~~------~-----~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+.. + ...+.+..||+.+|+.+.|..
T Consensus 304 ~~~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~g~~ 339 (565)
T 3ntd_A 304 AVEEQDFVTGQACLVPLAGPANRQGRMAADNMFGRE 339 (565)
T ss_dssp GBCEEBTTTCCEECCCCHHHHHHHHHHHHHHHTTCC
T ss_pred eEeeccccCCceeecccHHHHHHHHHHHHHHhcCCC
Confidence 862 1 246889999999999999864
No 159
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=99.72 E-value=2.6e-18 Score=202.10 Aligned_cols=285 Identities=10% Similarity=0.156 Sum_probs=171.6
Q ss_pred ceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
++|+|||||+||++||..|++ .+.+++|+|+|+++.. .| .+.+.. +
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~----~~--------------~~~~~~-----------~---- 51 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF----QF--------------VPSNPW-----------V---- 51 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE----EC--------------GGGHHH-----------H----
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC----cc--------------cCCccc-----------c----
Confidence 699999999999999999988 2346899999997631 11 000000 0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
.......+++...+.+++++.++ .+. ..+|+.++.. ...+.+. + .....|| +||+||
T Consensus 52 -----~~g~~~~~~~~~~l~~~~~~~gv--~~~-~~~v~~id~~-----~~~V~~~---~--g~~i~~d-----~lviAt 108 (437)
T 3sx6_A 52 -----GVGWKERDDIAFPIRHYVERKGI--HFI-AQSAEQIDAE-----AQNITLA---D--GNTVHYD-----YLMIAT 108 (437)
T ss_dssp -----HHTSSCHHHHEEECHHHHHTTTC--EEE-CSCEEEEETT-----TTEEEET---T--SCEEECS-----EEEECC
T ss_pred -----ccCccCHHHHHHHHHHHHHHCCC--EEE-EeEEEEEEcC-----CCEEEEC---C--CCEEECC-----EEEECC
Confidence 00112344555556677777766 454 4688888752 2333321 1 2357799 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhccccccccccccccc-cc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE-FR 247 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~ 247 (1129)
| +.|+.|++||..... +. ...+. + .+.+....+.+.. ..
T Consensus 109 G--~~~~~~~ipG~~~~~--~~--------~~~~~---~-------------------------~~~a~~~~~~~~~~~~ 148 (437)
T 3sx6_A 109 G--PKLAFENVPGSDPHE--GP--------VQSIC---T-------------------------VDHAERAFAEYQALLR 148 (437)
T ss_dssp C--CEECGGGSTTCSTTT--SS--------EECCS---S-------------------------HHHHHHHHHHHHHHHH
T ss_pred C--CCcCcccCCCCCccc--Cc--------ceecc---c-------------------------ccHHHHHHHHHHHHHh
Confidence 9 788888888742110 00 00000 0 0000000000100 01
Q ss_pred ccceeEeeceeeeecCCCCCCCCc------ccchh----hhcccccE-----EEEccccCCcccccC---CC--------
Q psy12350 248 KDKYKIINEKAFVRDPGAANGPSG------LDITH----DISTEATT-----VFLSHHSEHVKKLRF---PN-------- 301 (1129)
Q Consensus 248 ~~~~~vi~~~~~v~~~~vGgG~sg------~e~A~----~l~~~~~~-----V~lv~r~~~~~~~~~---~~-------- 301 (1129)
.++++| ||+|++| +|+|. .+.+.+.+ |+++++.+.+..... +.
T Consensus 149 ~~~~vV-----------VGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~ 217 (437)
T 3sx6_A 149 EPGPIV-----------IGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKG 217 (437)
T ss_dssp SCCCEE-----------EEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHH
T ss_pred CCCEEE-----------EEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHH
Confidence 234444 6886665 88884 44555543 999999886532211 11
Q ss_pred ------CeEEcCCceEEcCCceEEcC---------CCEeecCEEEEcccccccCCCCCCCCCeEeecCcccccccccccC
Q psy12350 302 ------NVVKKPDIAELTPTGVRFQD---------GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINI 366 (1129)
Q Consensus 302 ------~i~~~~~v~~~~~~~v~~~d---------g~~~~~D~VI~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~ 366 (1129)
++..+..|++++++++++++ ++++++|.|++|+|+++..++.. ..++ .+++..+....++..+
T Consensus 218 l~~~gI~~~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~-~~gl-~~~~G~i~Vd~~l~t~ 295 (437)
T 3sx6_A 218 LKEEGIEAYTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAG-VEGL-CNPGGFVLVDEHQRSK 295 (437)
T ss_dssp HHHTTCEEECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHT-STTT-BCTTSCBCBCTTSBBS
T ss_pred HHHCCCEEEcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchhhhc-cccc-cCCCCcEEeChhccCC
Confidence 34556779999988887765 56789999999999987644332 2233 3444444444444446
Q ss_pred CCCCeEEeccccccc--------------ccccccceeeehhhcccccccc
Q psy12350 367 EHPSMCIIGYTYRYP--------------FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 367 ~~p~l~~~G~~~~~~--------------~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
++|++|++|.....| ......|++.+|.++.+.+.|+
T Consensus 296 ~~~~Ifa~GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~ 346 (437)
T 3sx6_A 296 KYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGR 346 (437)
T ss_dssp SCTTEEECGGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCCCEEEEEEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 889999999875422 1223488999999999888776
No 160
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=99.72 E-value=7.2e-18 Score=188.37 Aligned_cols=265 Identities=13% Similarity=0.108 Sum_probs=164.1
Q ss_pred eeeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCC-CCCCccccccCccccccccccccc
Q psy12350 736 FIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQ-YGLPVHSSMYKSLKTNLPKDLMEL 814 (1129)
Q Consensus 736 ~~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~-~g~p~~~~~y~~~~~~~~~~~~~~ 814 (1129)
.|...+++|||+||+|++||.+|.+.| ++|+|||++ ..||.+..+ +++-.. .+++.. .+......+...+
T Consensus 3 ~M~~yDVvIIGaGpAGlsAA~~lar~g--~~v~lie~~-~~gg~~~~~-~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 73 (304)
T 4fk1_A 3 AMKYIDCAVIGAGPAGLNASLVLGRAR--KQIALFDNN-TNRNRVTQN-SHGFITRDGIKPE-----EFKEIGLNEVMKY 73 (304)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEECS-CCGGGGSSC-BCCSTTCTTBCHH-----HHHHHHHHHHTTS
T ss_pred CCCCcCEEEECCCHHHHHHHHHHHHCC--CCEEEEeCC-CCCCeeeee-cCCccCCCCCCHH-----HHHHHHHHHHHhc
Confidence 456678999999999999999999999 999999986 467766432 222100 011100 0000000001111
Q ss_pred cCC------------------CCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEc
Q psy12350 815 CGY------------------GHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVG 876 (1129)
Q Consensus 815 ~~~------------------~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG 876 (1129)
... .........+....-++.+|+.|+.|++||.+.+.++.++.....+...+++|+++|||
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~~~~~~~~~VIg 153 (304)
T 4fk1_A 74 PSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGWELKDQPLIIIS 153 (304)
T ss_dssp TTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSGGGTTSCEEEEC
T ss_pred CCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchhHhcCCceeeec
Confidence 000 00000011222233455599999999999988777766665555555567789999999
Q ss_pred CCcc-HHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC-eeEEeCC-----c
Q psy12350 877 SGQS-GLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD-VAELTPT-----G 949 (1129)
Q Consensus 877 ~G~S-g~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~-i~~v~~~-----~ 949 (1129)
||.. ++|+|..+.+.+++|+++.+......... + .+. ..++.+... ++.+..+ .
T Consensus 154 gG~~~~~e~a~~~~~~~~~v~i~~~~~~~~~~~~---~-------------~l~---~~g~~~~~~~v~~~~~~~~~~~~ 214 (304)
T 4fk1_A 154 ENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIM---D-------------ELS---NKNIPVITESIRTLQGEGGYLKK 214 (304)
T ss_dssp CSHHHHHHHHHHHTTTCSCEEEECSSCCCCHHHH---H-------------HHH---TTTCCEECSCEEEEESGGGCCCE
T ss_pred CCCchhhhHHHHHHhCCceEEEEeccccchhhhh---h-------------hhh---ccceeEeeeeEEEeecCCCeeee
Confidence 9875 57888888888999999987543321110 0 000 113333333 5555432 3
Q ss_pred EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHH
Q psy12350 950 VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQ 1027 (1129)
Q Consensus 950 V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a 1027 (1129)
|++.||+++++|.+|+++|..++.+++.+ +|+++++++...+..+ +.++.||||++|++.... ....+-.|++.+|
T Consensus 215 v~~~~g~~i~~~~~vi~~g~~~~~~~~~~-~g~~~~~~G~I~vd~~-~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA 292 (304)
T 4fk1_A 215 VEFHSGLRIERAGGFIVPTFFRPNQFIEQ-LGCELQSNGTFVIDDF-GRTSEKNIYLAGETTTQGPSSLIIAASQGNKAA 292 (304)
T ss_dssp EEETTSCEECCCEEEECCEEECSSCHHHH-TTCCCCTTSSSCSSTT-CBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHH
T ss_pred eeccccceeeecceeeeeccccCChhhhh-cCeEECCCCCEEECcC-CccCCCCEEEEeccCCCcchHHHHHHHHHHHHH
Confidence 88999999999999998888877676654 7888877654444333 356899999999986432 3456666777776
Q ss_pred HHH
Q psy12350 1028 QLM 1030 (1129)
Q Consensus 1028 ~~l 1030 (1129)
..+
T Consensus 293 ~~i 295 (304)
T 4fk1_A 293 IAI 295 (304)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 161
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=99.72 E-value=2e-18 Score=202.22 Aligned_cols=272 Identities=14% Similarity=0.143 Sum_probs=165.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccc----cc-
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLM----EL- 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~----~~- 814 (1129)
.+++|||+|++|+.+|..|++.|.+.+|+|+|+++.++.. +.+-... .-......+.+......... .+
T Consensus 5 ~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~~~~~~----~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~gv~~~ 78 (431)
T 1q1r_A 5 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHH----LPPLSKA--YLAGKATAESLYLRTPDAYAAQNIQLL 78 (431)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBC----SGGGGTT--TTTTCSCSGGGBSSCHHHHHHTTEEEE
T ss_pred CcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCCCCCCc----CCCCcHH--HhCCCCChHHhcccCHHHHHhCCCEEE
Confidence 4689999999999999999999943489999998764321 0000000 00000000000000000000 00
Q ss_pred cCCC---CCC-------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCC-c-EEeeccCCCC-----CCCCCCeEEEEcC
Q psy12350 815 CGYG---HKG-------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQI-P-ILHSRDYRTP-----EPFAGKQAVVVGS 877 (1129)
Q Consensus 815 ~~~~---~~~-------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g-~-~~hs~~~~~~-----~~~~gk~VvVVG~ 877 (1129)
.+.. +.. .....+....-++.+|+.|+.|++||.+ +.+ . +++.....+. .-..+|+|+|||+
T Consensus 79 ~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p~~~~i~G~~-~~~~~~v~~~~~~~d~~~l~~~l~~~~~vvViGg 157 (431)
T 1q1r_A 79 GGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPRPLPVASGA-VGKANNFRYLRTLEDAECIRRQLIADNRLVVIGG 157 (431)
T ss_dssp CSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCGGGTTH-HHHSTTEEESSSHHHHHHHHHTCCTTCEEEEECC
T ss_pred eCCEEEEEECCCCEEEECCCCEEECCEEEEcCCCCccCCCCCCcc-cCCCceEEEECCHHHHHHHHHHhhcCCeEEEECC
Confidence 0000 000 0011122223344499999999999975 222 1 4432222211 1125899999999
Q ss_pred CccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC---C--
Q psy12350 878 GQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP---T-- 948 (1129)
Q Consensus 878 G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~---~-- 948 (1129)
|.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+.+. ..+|++..+ |.+++. +
T Consensus 158 G~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~~~ 225 (431)
T 1q1r_A 158 GYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHR------------EAGVDIRTGTQVCGFEMSTDQQK 225 (431)
T ss_dssp SHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHH------------HHTCEEECSCCEEEEEECTTTCC
T ss_pred CHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHH------------hCCeEEEeCCEEEEEEeccCCCc
Confidence 99999999999999999999998766543 22222221111110 115666544 777764 2
Q ss_pred --cEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc-----------h
Q psy12350 949 --GVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL-----------L 1015 (1129)
Q Consensus 949 --~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~-----------~ 1015 (1129)
.|++.||+++++|.||+|+|++|+.+++.. .|+++++ + ..+..+ +.++.||||++|++.... .
T Consensus 226 v~~v~~~~G~~i~~D~Vv~a~G~~p~~~l~~~-~gl~~~~-g-i~Vd~~-~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~ 301 (431)
T 1q1r_A 226 VTAVLCEDGTRLPADLVIAGIGLIPNCELASA-AGLQVDN-G-IVINEH-MQTSDPLIMAVGDCARFHSQLYDRWVRIES 301 (431)
T ss_dssp EEEEEETTSCEEECSEEEECCCEEECCHHHHH-TTCCBSS-S-EECCTT-SBCSSTTEEECGGGEEEEETTTTEEEECCS
T ss_pred EEEEEeCCCCEEEcCEEEECCCCCcCcchhhc-cCCCCCC-C-EEECCC-cccCCCCEEEEEeEEEEccccCCceEeeCH
Confidence 378889999999999999999999877654 6677654 3 233332 345899999999987532 3
Q ss_pred hHHHHHHHHHHHHHHcCCC
Q psy12350 1016 FNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1016 ~~~~e~qa~~~a~~l~g~~ 1034 (1129)
++.+..||+.+|+.+.|..
T Consensus 302 ~~~A~~qg~~aa~~i~g~~ 320 (431)
T 1q1r_A 302 VPNALEQARKIAAILCGKV 320 (431)
T ss_dssp HHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhcCCC
Confidence 5789999999999998863
No 162
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=99.71 E-value=3.4e-17 Score=196.18 Aligned_cols=266 Identities=14% Similarity=0.134 Sum_probs=167.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCC-CCCcc--ccccCcccccc---------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQY-GLPVH--SSMYKSLKTNL--------- 807 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~-g~p~~--~~~y~~~~~~~--------- 807 (1129)
.+++|||+|++|+++|..|.+.| ++++++|+ .+||.|.... +...+ +.+.. ..+...+....
T Consensus 213 ~dVvIIGgG~AGl~aA~~la~~G--~~v~lie~--~~GG~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~~ 286 (521)
T 1hyu_A 213 YDVLIVGSGPAGAAAAVYSARKG--IRTGLMGE--RFGGQVLDTV--DIENYISVPKTEGQKLAGALKAHVSDYDVDVID 286 (521)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECS--STTGGGTTCS--CBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEEC
T ss_pred ccEEEECCcHHHHHHHHHHHhCC--CeEEEEEC--CCCCcccccc--cccccCCCCCCCHHHHHHHHHHHHHHcCCEEEc
Confidence 36789999999999999999999 99999986 5899997431 10000 00000 00000000000
Q ss_pred cccccccc-------CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCcc
Q psy12350 808 PKDLMELC-------GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQS 880 (1129)
Q Consensus 808 ~~~~~~~~-------~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~S 880 (1129)
........ .+.........+.....++.+|+.|+.|++||.+.|.+..+|...+.+...+.+|+|+|||+|.+
T Consensus 287 ~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~~~~~k~V~ViGgG~~ 366 (521)
T 1hyu_A 287 SQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNS 366 (521)
T ss_dssp SCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGGGGBTSEEEEECCSHH
T ss_pred CCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchhhcCCCeEEEECCCHH
Confidence 00000000 00000000011111223334999999999999988887767766655555567999999999999
Q ss_pred HHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCC-----cEEec
Q psy12350 881 GLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPT-----GVRFQ 953 (1129)
Q Consensus 881 g~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~-----~V~~~ 953 (1129)
|+|+|..|++.+.+|+++.+.+....- ..+. ..+.. ..+|++..+ +.++.++ +|.+.
T Consensus 367 g~E~A~~L~~~g~~Vtlv~~~~~l~~~-~~l~-------------~~l~~--~~gV~v~~~~~v~~i~~~~~~v~~v~~~ 430 (521)
T 1hyu_A 367 GVEAAIDLAGIVEHVTLLEFAPEMKAD-QVLQ-------------DKVRS--LKNVDIILNAQTTEVKGDGSKVVGLEYR 430 (521)
T ss_dssp HHHHHHHHHHHBSEEEEECSSSSCCSC-HHHH-------------HHHTT--CTTEEEECSEEEEEEEECSSSEEEEEEE
T ss_pred HHHHHHHHHhhCCEEEEEEeCcccCcC-HHHH-------------HHHhc--CCCcEEEeCCEEEEEEcCCCcEEEEEEE
Confidence 999999999999999999886543210 0000 01110 136777765 7778653 36665
Q ss_pred C---Cc--EeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHH
Q psy12350 954 D---GS--YEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLF 1026 (1129)
Q Consensus 954 d---G~--~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~ 1026 (1129)
| |+ ++++|.||+|+|++|+.+++.. .+.+++++...+..+ ..++.||||++|++.... ....+..||+.+
T Consensus 431 ~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~--~l~~~~~G~I~Vd~~-~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~a 507 (521)
T 1hyu_A 431 DRVSGDIHSVALAGIFVQIGLLPNTHWLEG--ALERNRMGEIIIDAK-CETSVKGVFAAGDCTTVPYKQIIIATGEGAKA 507 (521)
T ss_dssp ETTTCCEEEEECSEEEECCCEEESCGGGTT--TSCBCTTSCBCCCTT-CBCSSTTEEECSTTBCCSSCCHHHHHHHHHHH
T ss_pred eCCCCceEEEEcCEEEECcCCCCCchHHhh--hhccCCCCcEEeCCC-CCCCCCCEEEeecccCCCcceeeehHHhHHHH
Confidence 4 64 5799999999999999888875 255555443333332 345899999999987643 456777788877
Q ss_pred HHHH
Q psy12350 1027 QQLM 1030 (1129)
Q Consensus 1027 a~~l 1030 (1129)
|..+
T Consensus 508 a~~i 511 (521)
T 1hyu_A 508 SLSA 511 (521)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7655
No 163
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=99.71 E-value=1.5e-18 Score=203.48 Aligned_cols=99 Identities=8% Similarity=0.114 Sum_probs=65.1
Q ss_pred CeEEcCCceEEcCCceEEcC--C--CEeecCEEEEcccccccCCCCCCC-CCeEeecCcccccccccccCCCCCeEEecc
Q psy12350 302 NVVKKPDIAELTPTGVRFQD--G--SYEQVDIILYCTGYTYRYPFLHES-CGIKVVNKNVQPLYKHLINIEHPSMCIIGY 376 (1129)
Q Consensus 302 ~i~~~~~v~~~~~~~v~~~d--g--~~~~~D~VI~atG~~~~~~~l~~~-~~~~~~~~~~~~l~~~~~~~~~p~l~~~G~ 376 (1129)
++..+..|++++++++++++ | +++++|.||+|+|.+++ +++... ..+..+....+.....+-.+++|++|.+|.
T Consensus 216 ~~~~~~~v~~v~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD 294 (430)
T 3hyw_A 216 DWIANVAVKAIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGV 294 (430)
T ss_dssp EEECSCEEEEECSSEEEEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECST
T ss_pred EEEeCceEEEEeCCceEEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEecc
Confidence 45667889999999888765 3 36899999999999986 333211 112222222222223333467788888886
Q ss_pred cccc----------------cccccccceeeehhhcccccccc
Q psy12350 377 TYRY----------------PFLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 377 ~~~~----------------~~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
.... +.+. +||+.+|+|+.+.+.|+
T Consensus 295 ~a~~p~~~~~~~~~~~pk~a~~A~--~qg~~~A~Ni~~~l~g~ 335 (430)
T 3hyw_A 295 VTAIPPIEKTPIPTGVPKTGMMIE--QMAMAVAHNIVNDIRNN 335 (430)
T ss_dssp TBCCCCSSCCSSCCCCCCCHHHHH--HHHHHHHHHHHHHHTTC
T ss_pred EEecCCcccCcCcCccchHHHHHH--HHHHHHHHHHHHHhcCC
Confidence 6432 2344 89999999999888776
No 164
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=99.71 E-value=3.2e-18 Score=203.66 Aligned_cols=273 Identities=13% Similarity=0.168 Sum_probs=166.5
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc-cCCC-CCCCCCCCCccccccCccc----c--ccc----
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL-YTEH-IGCDQYGLPVHSSMYKSLK----T--NLP---- 808 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~-~~~~-~g~~~~g~p~~~~~y~~~~----~--~~~---- 808 (1129)
+++|||+|++|+++|..|++.++..+|+|+|+++..++... ...+ .+. .+....+..... . +..
T Consensus 38 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~gv~~~~~ 113 (480)
T 3cgb_A 38 NYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYAQCGLPYVISGA----IASTEKLIARNVKTFRDKYGIDAKVR 113 (480)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBCGGGHHHHHTTS----SSCGGGGBSSCHHHHHHTTCCEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCCCCCcchhhcCC----cCCHHHhhhcCHHHHHhhcCCEEEeC
Confidence 78999999999999999999733399999999887653211 0000 000 000000000000 0 000
Q ss_pred ccccccc--C--CCCCC-CCCC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCC-------CCCCCeEEE
Q psy12350 809 KDLMELC--G--YGHKG-NADK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPE-------PFAGKQAVV 874 (1129)
Q Consensus 809 ~~~~~~~--~--~~~~~-~~~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~-------~~~gk~VvV 874 (1129)
....... . +.... .... .+.....++.+|+.|+.|++||.+. ..++|...+.+.. ...+|+|+|
T Consensus 114 ~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~--~~v~~~~~~~~~~~l~~~~~~~~~~~vvV 191 (480)
T 3cgb_A 114 HEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDL--QGVHLLKTIPDAERILKTLETNKVEDVTI 191 (480)
T ss_dssp EEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTS--BTEECCSSHHHHHHHHHHHHSSCCCEEEE
T ss_pred CEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccC--CCEEEeCCHHHHHHHHHHhhhcCCCeEEE
Confidence 0000000 0 00000 0000 1222334445999999999999863 2366654443321 126899999
Q ss_pred EcCCccHHHHHHHHHhcCCEEEEEecCCCCccc-hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc-E
Q psy12350 875 VGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI-TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-V 950 (1129)
Q Consensus 875 VG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-V 950 (1129)
||+|.+|+|+|..|++.|.+|+++++.+..++. .+.+.....+. +. ..+|++..+ |.+++.++ +
T Consensus 192 iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~---------l~---~~Gv~i~~~~~v~~i~~~~~v 259 (480)
T 3cgb_A 192 IGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKE---------AD---KHHIEILTNENVKAFKGNERV 259 (480)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHH---------HH---HTTCEEECSCCEEEEEESSBE
T ss_pred ECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHH---------HH---HcCcEEEcCCEEEEEEcCCcE
Confidence 999999999999999999999999987654431 11111111110 10 125666543 77776543 2
Q ss_pred --EecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chhH
Q psy12350 951 --RFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLFN 1017 (1129)
Q Consensus 951 --~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~~ 1017 (1129)
...++.++++|.||+|||++|+.+++.. .|+++++++...+..+ +.++.||||++|++... ..++
T Consensus 260 ~~v~~~~~~i~~D~vi~a~G~~p~~~~l~~-~g~~~~~~G~I~Vd~~-~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~~ 337 (480)
T 3cgb_A 260 EAVETDKGTYKADLVLVSVGVKPNTDFLEG-TNIRTNHKGAIEVNAY-MQTNVQDVYAAGDCATHYHVIKEIHDHIPIGT 337 (480)
T ss_dssp EEEEETTEEEECSEEEECSCEEESCGGGTT-SCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBCEEBTTTCSEECCCCHH
T ss_pred EEEEECCCEEEcCEEEECcCCCcChHHHHh-CCcccCCCCCEEECCC-ccCCCCCEEEeeeEEEecCCCCCcceecchHH
Confidence 2234567899999999999999887764 6777765544334333 34579999999998732 2468
Q ss_pred HHHHHHHHHHHHHcCC
Q psy12350 1018 LFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1018 ~~e~qa~~~a~~l~g~ 1033 (1129)
.+..||+.+|+.+.|.
T Consensus 338 ~A~~qg~~aa~~i~g~ 353 (480)
T 3cgb_A 338 TANKQGRLAGLNMLDK 353 (480)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999999999999875
No 165
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*
Probab=99.70 E-value=4.1e-18 Score=201.12 Aligned_cols=272 Identities=16% Similarity=0.148 Sum_probs=166.7
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc-CCC-CCCCCCCCCccccccCccccccccccccc-cCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY-TEH-IGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGY 817 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~-~~~-~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~ 817 (1129)
+++|||+|++|+.+|..|++.++..+|+|+|+++.+|..... ..+ .+. .+....+.........+.-..+ ...
T Consensus 2 dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~gv~~~~~~ 77 (447)
T 1nhp_A 2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGK----VKDVNSVRYMTGEKMESRGVNVFSNT 77 (447)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTS----SCCGGGSBSCCHHHHHHTTCEEEETE
T ss_pred eEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccCcccccchhhhcCc----cCCHHHhhcCCHHHHHHCCCEEEECC
Confidence 478999999999999999998333999999998876521100 000 000 0000000000000000000000 000
Q ss_pred C---C-CCCC---------CC--CCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-------CCCCCCeEEEE
Q psy12350 818 G---H-KGNA---------DK--SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-------EPFAGKQAVVV 875 (1129)
Q Consensus 818 ~---~-~~~~---------~~--~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-------~~~~gk~VvVV 875 (1129)
. + +... .. .+....-++.+|+.|+.|++||.+. . .++|+.++.+. ....+++|+||
T Consensus 78 ~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~-~-~v~~~~~~~~~~~l~~~~~~~~~~~vvIi 155 (447)
T 1nhp_A 78 EITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDL-D-NIYLMRGRQWAIKLKQKTVDPEVNNVVVI 155 (447)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTS-B-SEECCCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred EEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCC-C-CeEEECCHHHHHHHHHHhhhcCCCeEEEE
Confidence 0 0 0000 00 0122333445999999999999863 2 47776554332 11268999999
Q ss_pred cCCccHHHHHHHHHhcCCEEEEEecCCCCcc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCc--
Q psy12350 876 GSGQSGLDITLDIATTGKQAVVVGSGQSGLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTG-- 949 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~-- 949 (1129)
|+|.+|+|+|..|++.|.+|+++++.+..++ +.+.+.....+ .+. ..+|+++.+ |.+++.++
T Consensus 156 G~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~---------~l~---~~gv~i~~~~~v~~i~~~~~v 223 (447)
T 1nhp_A 156 GSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE---------EME---ANNITIATGETVERYEGDGRV 223 (447)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHH---------HHH---TTTEEEEESCCEEEEECSSBC
T ss_pred CCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHH---------HHH---hCCCEEEcCCEEEEEEccCcE
Confidence 9999999999999999999999998765543 22222111111 011 125666643 88886543
Q ss_pred --EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEcccccc-----------chh
Q psy12350 950 --VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT-----------LLF 1016 (1129)
Q Consensus 950 --V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~-----------~~~ 1016 (1129)
+.+ +|+++++|.||+|||++|+.++++. . +++++++...+..+ +.++.||||++|++... ...
T Consensus 224 ~~v~~-~~~~i~~d~vi~a~G~~p~~~~~~~-~-~~~~~~G~i~Vd~~-~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~ 299 (447)
T 1nhp_A 224 QKVVT-DKNAYDADLVVVAVGVRPNTAWLKG-T-LELHPNGLIKTDEY-MRTSEPDVFAVGDATLIKYNPADTEVNIALA 299 (447)
T ss_dssp CEEEE-SSCEEECSEEEECSCEEESCGGGTT-T-SCBCTTSCBCCCTT-CBCSSTTEEECGGGSCEEEGGGTEEECCCCH
T ss_pred EEEEE-CCCEEECCEEEECcCCCCChHHHHh-h-hhhcCCCcEEECcc-ccCCCCCEEEeeeEEEeeccCCCCceechhH
Confidence 444 6778999999999999999887765 3 56654443333333 34589999999998742 246
Q ss_pred HHHHHHHHHHHHHHcCCC
Q psy12350 1017 NLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 1017 ~~~e~qa~~~a~~l~g~~ 1034 (1129)
+.+..||+.+|..+.|..
T Consensus 300 ~~A~~qg~~aa~~i~g~~ 317 (447)
T 1nhp_A 300 TNARKQGRFAVKNLEEPV 317 (447)
T ss_dssp HHHHHHHHHHHHTSSSCC
T ss_pred HHHHHHHHHHHHhhcCCC
Confidence 899999999999998753
No 166
>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Probab=99.70 E-value=3.6e-18 Score=209.19 Aligned_cols=184 Identities=15% Similarity=0.186 Sum_probs=125.5
Q ss_pred hhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCcc-chhh
Q psy12350 832 DVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD-ITLD 910 (1129)
Q Consensus 832 ~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~-~~~~ 910 (1129)
.++++|+.|+.|++||.+.+ .+++.++.+. ...+|+|+|||+|.+|+|+|..|++.|.+||++.+. ..++ +.+.
T Consensus 253 lviAtGs~p~~p~i~G~~~~---~~~~~~~~~~-~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~-~~l~~~d~~ 327 (598)
T 2x8g_A 253 IILATGERPKYPEIPGAVEY---GITSDDLFSL-PYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRS-ILLRGFDQQ 327 (598)
T ss_dssp EEECCCEEECCCSSTTHHHH---CEEHHHHTTC-SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CSSTTSCHH
T ss_pred EEEeCCCCCCCCCCCCcccc---eEcHHHHhhC-ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC-cCcCcCCHH
Confidence 44459999999999997643 4566554433 235789999999999999999999999999999886 2222 2222
Q ss_pred hhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe--------C---CcE--E--ecCCcEee--ccEEEEccCccC
Q psy12350 911 IATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT--------P---TGV--R--FQDGSYEQ--VDIILCCTGYSN 971 (1129)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~--------~---~~V--~--~~dG~~~~--~D~VI~aTG~~~ 971 (1129)
+.....+. +. ..+|++..+ +.+++ + +.+ . +.+|++++ +|.||+|+|++|
T Consensus 328 ~~~~~~~~---------l~---~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p 395 (598)
T 2x8g_A 328 MAEKVGDY---------ME---NHGVKFAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREP 395 (598)
T ss_dssp HHHHHHHH---------HH---HTTCEEEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEE
T ss_pred HHHHHHHH---------HH---hCCCEEEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCcc
Confidence 22211111 00 114555543 34442 2 223 2 35887664 999999999999
Q ss_pred cCCCCC-CCCCeeecCCcccccccceeecCCCCcEEEcccccc--chhHHHHHHHHHHHHHHcCC
Q psy12350 972 HYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT--LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 972 ~~~fl~-~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~--~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+.++|. +..|+++++++...+..+ +.++.|+||++|++... ...+.+..||+.+|..+.|.
T Consensus 396 ~~~~l~~~~~gl~~~~~G~i~vd~~-~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~ 459 (598)
T 2x8g_A 396 QLSKVLCETVGVKLDKNGRVVCTDD-EQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFAG 459 (598)
T ss_dssp CGGGTBCGGGCCCBCTTSCBCCCTT-SBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHHC
T ss_pred ccCccCchhcCceECCCCcEEeCCC-CcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhcC
Confidence 988763 446777766554444443 35689999999999432 46689999999999988753
No 167
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}
Probab=99.70 E-value=4e-18 Score=211.55 Aligned_cols=257 Identities=16% Similarity=0.069 Sum_probs=171.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC-CCCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT-EHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~-~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
.+++|||+|++|+++|..|.+.| ++|+|||+++.+||+|... ..++.. .+..+.......+..+.+..
T Consensus 392 ~~VvIIGgG~AGl~aA~~La~~G--~~V~liE~~~~~GG~~~~~~~~p~~~---------~~~~~~~~~~~~~~~~~gv~ 460 (690)
T 3k30_A 392 ARVLVVGAGPSGLEAARALGVRG--YDVVLAEAGRDLGGRVTQESALPGLS---------AWGRVKEYREAVLAELPNVE 460 (690)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTHHHHHHTSTTCG---------GGGHHHHHHHHHHHTCTTEE
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCCCEeeeccCCCchh---------HHHHHHHHHHHHHHHcCCCE
Confidence 46789999999999999999999 9999999999999998753 122210 01111111111111111111
Q ss_pred CCCCC------CCCCCChhhhhhccCC--------CCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEc--CCccHH
Q psy12350 819 HKGNA------DKSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVG--SGQSGL 882 (1129)
Q Consensus 819 ~~~~~------~~~~~~~~~v~~~~~~--------P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG--~G~Sg~ 882 (1129)
+.... ...+.....++.+|+. |..|++||.+. ..++++.++.+.....+|+|+||| +|.+|+
T Consensus 461 ~~~~~~v~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~--~~v~~~~~~l~~~~~~g~~VvViG~ggG~~g~ 538 (690)
T 3k30_A 461 IYRESPMTGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEG--MQVLGPDDLFAGRLPDGKKVVVYDDDHYYLGG 538 (690)
T ss_dssp EESSCCCCHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTT--SEEECHHHHHTTCCCSSSEEEEEECSCSSHHH
T ss_pred EEECCeecHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCC--CcEEcHHHHhCCCCCCCCEEEEEcCCCCccHH
Confidence 11110 0011112223347877 55788999864 568888777766667789999999 999999
Q ss_pred HHHHHHHhcCCEEEEEecCCCCccchh--hhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEec-----
Q psy12350 883 DITLDIATTGKQAVVVGSGQSGLDITL--DIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRFQ----- 953 (1129)
Q Consensus 883 eiA~~la~~~~~V~vv~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~----- 953 (1129)
|+|..|++.+++|+++.+.+..+.... ....... ..+. ..+|+++.+ |.+++++++.+.
T Consensus 539 e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~---------~~l~---~~GV~i~~~~~V~~i~~~~~~v~~~~~~ 606 (690)
T 3k30_A 539 VVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQ---------RRLI---ENGVARVTDHAVVAVGAGGVTVRDTYAS 606 (690)
T ss_dssp HHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHH---------HHHH---HTTCEEEESEEEEEEETTEEEEEETTTC
T ss_pred HHHHHHHhCCCeeEEEecccccccccccchhHHHHH---------HHHH---HCCCEEEcCcEEEEEECCeEEEEEccCC
Confidence 999999999999999988765443211 0000000 0111 126777665 889988876553
Q ss_pred CCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHcCC
Q psy12350 954 DGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 954 dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
+++++++|.||+|||++|+..++.+ ++ ... . .++.|+||++|++.....+..+..||+.+|..+.+.
T Consensus 607 ~~~~i~aD~VV~A~G~~p~~~l~~~-l~----~~~----~----~t~~~~VyaiGD~~~~~~~~~A~~~g~~aa~~i~~~ 673 (690)
T 3k30_A 607 IERELECDAVVMVTARLPREELYLD-LV----ARR----D----AGEIASVRGIGDAWAPGTIAAAVWSGRRAAEEFDAV 673 (690)
T ss_dssp CEEEEECSEEEEESCEEECCHHHHH-HH----HHH----H----HTSCSEEEECGGGTSCBCHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEECCEEEECCCCCCChHHHHH-Hh----hhh----c----ccCCCCEEEEeCCCchhhHHHHHHHHHHHHHHHHhh
Confidence 4567899999999999999765542 11 100 0 568999999999987777777999999999999876
Q ss_pred C
Q psy12350 1034 I 1034 (1129)
Q Consensus 1034 ~ 1034 (1129)
.
T Consensus 674 l 674 (690)
T 3k30_A 674 L 674 (690)
T ss_dssp C
T ss_pred c
Confidence 3
No 168
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Probab=99.68 E-value=3.8e-18 Score=212.39 Aligned_cols=260 Identities=15% Similarity=0.157 Sum_probs=170.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC-CCCCCCCCCCccccccCccccccccccccc----
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE-HIGCDQYGLPVHSSMYKSLKTNLPKDLMEL---- 814 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~-~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~---- 814 (1129)
.+++|||+|++|+.+|..|.+.| ++|+|||+++.+||+|.+.. .|+. + .|..+.......+..+
T Consensus 390 ~~VvIIGgGpAGl~aA~~L~~~G--~~Vtlie~~~~~GG~~~~~~~~pg~-----~----~~~~~~~~~~~~i~~~~~~~ 458 (729)
T 1o94_A 390 DSVLIVGAGPSGSEAARVLMESG--YTVHLTDTAEKIGGHLNQVAALPGL-----G----EWSYHRDYRETQITKLLKKN 458 (729)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSTTTTHHHHTTSTTC-----G----GGHHHHHHHHHHHHHHHHHS
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCcCCeeeecccCCCh-----H----HHHHHHHHHHHHHHHhhccc
Confidence 36799999999999999999999 99999999999999997532 2221 1 1111000000000000
Q ss_pred -cCCCCCCC------CCCCCCChhhhhhccCC--------CCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEc--C
Q psy12350 815 -CGYGHKGN------ADKSYIGAKDVLENYNH--------PIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVG--S 877 (1129)
Q Consensus 815 -~~~~~~~~------~~~~~~~~~~v~~~~~~--------P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG--~ 877 (1129)
....+... ....+.....++.+|+. |+.|++||.++|...++++.++.+.....+|+|+||| +
T Consensus 459 ~~~v~i~~~~~v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~~~~gk~VvVIG~Gg 538 (729)
T 1o94_A 459 KESQLALGQKPMTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADT 538 (729)
T ss_dssp TTCEEECSCCCCCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCCSCCCSEEEEEECCC
T ss_pred CCceEEEeCeEEehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCCCCCCCeEEEEcCCC
Confidence 00001000 00012222334448887 6788999998766778888777655556789999999 9
Q ss_pred CccHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEEe-
Q psy12350 878 GQSGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVRF- 952 (1129)
Q Consensus 878 G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~~- 952 (1129)
|.+|+|+|..|++.|++||++.+.+ .+.. .+....... ..+. ..+|+++.+ +.+++++++.+
T Consensus 539 G~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~~~~~~---------~~l~---~~GV~i~~~~~v~~i~~~~v~~~ 605 (729)
T 1o94_A 539 YFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLEYPNMM---------RRLH---ELHVEELGDHFCSRIEPGRMEIY 605 (729)
T ss_dssp SSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTCHHHHH---------HHHH---HTTCEEECSEEEEEEETTEEEEE
T ss_pred CchHHHHHHHHHHcCCEEEEEeccc-ccccccccccHHHHH---------HHHH---hCCCEEEcCcEEEEEECCeEEEE
Confidence 9999999999999999999999876 3321 110000000 0010 126777765 88888776554
Q ss_pred ---cCC-cE------------------eeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccc
Q psy12350 953 ---QDG-SY------------------EQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVP 1010 (1129)
Q Consensus 953 ---~dG-~~------------------~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~ 1010 (1129)
.++ ++ +++|.||+|+|++++..++.+ ++.. .+.+ +.++.|+||++|++
T Consensus 606 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~~-l~~~------vd~~---~~t~~~~VyAiGD~ 675 (729)
T 1o94_A 606 NIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWNE-LKAR------ESEW---AENDIKGIYLIGDA 675 (729)
T ss_dssp ETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHHH-HHHT------GGGT---GGGTCCEEEECGGG
T ss_pred EecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHHH-Hhhh------cccc---cccCCCCeEEEeCc
Confidence 233 22 899999999999999775542 2111 1122 23588999999999
Q ss_pred cccchhHHHHHHHHHHHHHHcCC
Q psy12350 1011 RHTLLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1011 ~~~~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
.....+..+..||+.+|..+.+.
T Consensus 676 ~~~~~~~~A~~~G~~aA~~i~~~ 698 (729)
T 1o94_A 676 EAPRLIADATFTGHRVAREIEEA 698 (729)
T ss_dssp TSCCCHHHHHHHHHHHHHTTTSS
T ss_pred cchhhHHHHHHHHHHHHHHhhhh
Confidence 87666778999999999998764
No 169
>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*
Probab=99.68 E-value=6.3e-17 Score=190.00 Aligned_cols=277 Identities=14% Similarity=0.112 Sum_probs=160.3
Q ss_pred cCccccccCCchhhHHHHHHh-h------CCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE-A------GNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLM 812 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~-~------g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~ 812 (1129)
.+++|||+|++|+.+|..|.+ . + .+|+|||+.+.+||+|.+...|+. +....+...+.....+.-.
T Consensus 4 ~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g--~~V~lie~~~~~gg~~~~gv~p~~-----~~~~~~~~~~~~~~~~~~v 76 (456)
T 1lqt_A 4 YYIAIVGSGPSAFFAAASLLKAADTTEDLD--MAVDMLEMLPTPWGLVRSGVAPDH-----PKIKSISKQFEKTAEDPRF 76 (456)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTTCC--EEEEEEESSSSCSTHHHHTSCTTC-----TGGGGGHHHHHHHHTSTTE
T ss_pred CEEEEECcCHHHHHHHHHHHhhCccccCCC--CeEEEEecCCCCCCccccccCCCC-----CCHHHHHHHHHHHHhcCCC
Confidence 367999999999999999999 7 7 999999999999999976432221 0001111111000000000
Q ss_pred cc-cCCCCCCCCCC----CCCChhhhhhccCC-CCCCCCCCCCCCCCcEEeeccC-----------CCCCCCCCCeEEEE
Q psy12350 813 EL-CGYGHKGNADK----SYIGAKDVLENYNH-PIYPEFKGKDMCQIPILHSRDY-----------RTPEPFAGKQAVVV 875 (1129)
Q Consensus 813 ~~-~~~~~~~~~~~----~~~~~~~v~~~~~~-P~~P~i~G~~~f~g~~~hs~~~-----------~~~~~~~gk~VvVV 875 (1129)
.| .+..+... .. .+.....++.+|+. |+.|++||.+ +.| ++|+.++ ++..++.+|+|+||
T Consensus 77 ~~~~~v~v~~~-v~~~~~~~~~d~lViAtG~~~~~~~~ipG~~-~~g-v~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVI 153 (456)
T 1lqt_A 77 RFFGNVVVGEH-VQPGELSERYDAVIYAVGAQSDRMLNIPGED-LPG-SIAAVDFVGWYNAHPHFEQVSPDLSGARAVVI 153 (456)
T ss_dssp EEEESCCBTTT-BCHHHHHHHSSEEEECCCCCEECCCCCTTTT-STT-EEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEE
T ss_pred EEEeeEEECCE-EEECCCeEeCCEEEEeeCCCCCCCCCCCCCC-CCC-cEEHHHHHhhhhcCcccccchhhcCCCEEEEE
Confidence 00 01001000 00 00011122238887 7888999986 554 6776554 33344679999999
Q ss_pred cCCccHHHHHHHHHhc--------------------C-CEEEEEecCCCCcc-chh-hhhc---ccc-EEEEe-cCC---
Q psy12350 876 GSGQSGLDITLDIATT--------------------G-KQAVVVGSGQSGLD-ITL-DIAT---RAS-TVFLS-HHS--- 924 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~--------------------~-~~V~vv~~~~~~~~-~~~-~~~~---~~~-~~~~~-~~~--- 924 (1129)
|+|++|+|+|..|++. + ++|+++.+...... +.+ .+++ ... ...+. ..+
T Consensus 154 G~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~ 233 (456)
T 1lqt_A 154 GNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGI 233 (456)
T ss_dssp CCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTC
T ss_pred CCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccc
Confidence 9999999999999974 3 69999988654321 111 0000 000 00000 000
Q ss_pred ---------------cccc----ccC---CCCCeEEcCC--eeEEeCC----cEEec----------------CC--cEe
Q psy12350 925 ---------------ERVT----SLC---LPNNVVLKPD--VAELTPT----GVRFQ----------------DG--SYE 958 (1129)
Q Consensus 925 ---------------~~~~----~~~---~~~~V~~~~~--i~~v~~~----~V~~~----------------dG--~~~ 958 (1129)
.+.+ ... -..+|+++.. +.++.++ +|++. +| +++
T Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i 313 (456)
T 1lqt_A 234 TDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREEL 313 (456)
T ss_dssp CHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEE
T ss_pred hhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCcccccccCCCceEEE
Confidence 0000 000 0135776655 6777654 26664 45 358
Q ss_pred eccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHHHHHc
Q psy12350 959 QVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 959 ~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a~~l~ 1031 (1129)
++|.||+|+||+++. + .++++++++..........++.|+||++|++...+ ....+..||+.+|..+.
T Consensus 314 ~~d~vi~a~G~~p~~--l---~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~ 383 (456)
T 1lqt_A 314 PAQLVVRSVGYRGVP--T---PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLI 383 (456)
T ss_dssp ECSEEEECSCEECCC--C---TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHH
T ss_pred EcCEEEEccccccCC--C---CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999984 3 24555544332333333445899999999986432 34567788888887765
No 170
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.67 E-value=2.6e-17 Score=196.04 Aligned_cols=260 Identities=13% Similarity=0.146 Sum_probs=155.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.+||+|||||+|||+||.+|++ . ++|+|||+++.+||.|.+... .... ++
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~--~-~~V~vie~~~~~GG~~~~~~~------------------------~~~g---~~ 157 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQ--Y-LTVALIEERGWLGGDMWLKGI------------------------KQEG---FN 157 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTT--T-CCEEEECTTSSSSCSGGGTCS------------------------EETT---TT
T ss_pred cCCEEEECccHHHHHHHHHHHh--c-CCEEEEeCCCCCCCeeecccc------------------------ccCC---CC
Confidence 3689999999999999999999 5 899999999999999874100 0000 10
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEec
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQ 168 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAt 168 (1129)
. ...++.+.+.+.. ..++ .++++++|..+++. ...+.+.....+......|| +||+||
T Consensus 158 -----~----~~~~~~~~l~~~l-~~~v--~~~~~~~v~~i~~~-----~~~~~~~~~~~~~~~~~~~d-----~lvlAt 215 (493)
T 1y56_A 158 -----K----DSRKVVEELVGKL-NENT--KIYLETSALGVFDK-----GEYFLVPVVRGDKLIEILAK-----RVVLAT 215 (493)
T ss_dssp -----E----EHHHHHHHHHHTC-CTTE--EEETTEEECCCEEC-----SSSEEEEEEETTEEEEEEES-----CEEECC
T ss_pred -----C----CHHHHHHHHHHHH-hcCC--EEEcCCEEEEEEcC-----CcEEEEEEecCCeEEEEECC-----EEEECC
Confidence 0 2234443333222 2233 67889999887752 22233322222322356789 999999
Q ss_pred ccCCCCCccccccchhhhcccccccCCCCCcccccccccchhhhcccccccCCCCCCccchhcccccccccccccccccc
Q psy12350 169 GHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRK 248 (1129)
Q Consensus 169 G~~~~p~~p~i~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 248 (1129)
| +.|..|++||.. .+| ...... +. ...+.+.....
T Consensus 216 G--a~~~~~~~~g~~---~~g---------------v~~~~~----------------------~~---~~~~~~~~~~~ 250 (493)
T 1y56_A 216 G--AIDSTMLFENND---MPG---------------VFRRDF----------------------AL---EVMNVWEVAPG 250 (493)
T ss_dssp C--EEECCCCCTTTT---STT---------------EEEHHH----------------------HH---HHHHTSCBCSC
T ss_pred C--CCccCCCCCCCC---CCC---------------EEEcHH----------------------HH---HHHHhcccCCC
Confidence 9 778888787632 111 111000 00 00000000112
Q ss_pred cceeEeeceeeeecCCCCCCCCcccchhhhcccccEEEEccccCCcccccCCCCeEEcCCceEEcCC----ceEEcCCCE
Q psy12350 249 DKYKIINEKAFVRDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPT----GVRFQDGSY 324 (1129)
Q Consensus 249 ~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~~~V~lv~r~~~~~~~~~~~~i~~~~~v~~~~~~----~v~~~dg~~ 324 (1129)
++++| +|+|++|+| ..+.+.|-+ +..+..|++++++ .|.++||++
T Consensus 251 ~~vvV-----------iGgG~~gle--~~l~~~GV~------------------v~~~~~v~~i~~~~~v~~v~~~~g~~ 299 (493)
T 1y56_A 251 RKVAV-----------TGSKADEVI--QELERWGID------------------YVHIPNVKRVEGNEKVERVIDMNNHE 299 (493)
T ss_dssp SEEEE-----------ESTTHHHHH--HHHHHHTCE------------------EEECSSEEEEECSSSCCEEEETTCCE
T ss_pred CEEEE-----------ECCCHHHHH--HHHHhCCcE------------------EEeCCeeEEEecCCceEEEEeCCCeE
Confidence 34444 799999998 334333433 3334455566543 267788999
Q ss_pred eecCEEEEcccccccCCCCCCCCCe--EeecCcccc-cccccccCCCCCeEEecccccccc-cccccceeeehhhcccc
Q psy12350 325 EQVDIILYCTGYTYRYPFLHESCGI--KVVNKNVQP-LYKHLINIEHPSMCIIGYTYRYPF-LHESCGIKVVNKNVQPL 399 (1129)
Q Consensus 325 ~~~D~VI~atG~~~~~~~l~~~~~~--~~~~~~~~~-l~~~~~~~~~p~l~~~G~~~~~~~-~~~~~~~~~~a~~~~~~ 399 (1129)
+++|.||+|+|++++..++.. .++ ..++...++ ...++- ++|++|.+|.....+. .....|++.+|.++.+.
T Consensus 300 i~aD~Vv~a~G~~p~~~l~~~-~g~~~~~~~~g~i~~vd~~~~--s~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~~~ 375 (493)
T 1y56_A 300 YKVDALIFADGRRPDINPITQ-AGGKLRFRRGYYSPVLDEYHR--IKDGIYVAGSAVSIKPHYANYLEGKLVGAYILKE 375 (493)
T ss_dssp EECSEEEECCCEEECCHHHHH-TTCCEEEETTEEEECCCTTSE--EETTEEECSTTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCEEEECCCcCcCchHHHh-cCCCccccCCceeeccccccC--cCCCEEEEeccCCccCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887653 333 333444322 222221 6788999998764432 23347888888887654
No 171
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=99.67 E-value=9.9e-18 Score=215.85 Aligned_cols=284 Identities=13% Similarity=0.169 Sum_probs=164.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
.+||+|||||||||+||.+|++ .|+ +|+|||+.+.+||++.+. .+.|
T Consensus 187 ~~~VvVIGgGpAGl~aA~~L~~--~G~~~Vtv~E~~~~~GG~~~~~------------------------------ip~~ 234 (1025)
T 1gte_A 187 SAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEYVGGLSTSE------------------------------IPQF 234 (1025)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSSCSTHHHHT------------------------------SCTT
T ss_pred CCEEEEECccHHHHHHHHHHHh--cCCCcEEEEeCCCCCCcccccc------------------------------CCcc
Confidence 4799999999999999999999 557 799999999999987640 0111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
. ...++.++..++.++.|+ .+++++.|.. +.+++. ......|| +||||
T Consensus 235 ~----------~~~~~~~~~~~~~~~~gv--~~~~~~~v~~----------~~v~~~-----~~~~~~~d-----~vvlA 282 (1025)
T 1gte_A 235 R----------LPYDVVNFEIELMKDLGV--KIICGKSLSE----------NEITLN-----TLKEEGYK-----AAFIG 282 (1025)
T ss_dssp T----------SCHHHHHHHHHHHHTTTC--EEEESCCBST----------TSBCHH-----HHHHTTCC-----EEEEC
T ss_pred c----------CCHHHHHHHHHHHHHCCc--EEEcccEecc----------ceEEhh-----hcCccCCC-----EEEEe
Confidence 1 112456666677777776 7888877631 111111 11224589 99999
Q ss_pred cccCC-CCCcccc-ccchhhhcccccccCCCCCccccccccc-chhhhcccccccCCCCCCccchhcccccccccccccc
Q psy12350 168 QGHVT-LPSKAEM-LADTEQDVRGRLREGQNPNAFHIMGQRS-EKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFT 244 (1129)
Q Consensus 168 tG~~~-~p~~p~i-~g~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 244 (1129)
|| + .|..+++ +|... ..+.++ ..|+..+..... ... ......+.
T Consensus 283 tG--a~~p~~l~~~~G~~~-----------------~~gv~~a~~~L~~~~~~~~------------~~~--~~~~~~~~ 329 (1025)
T 1gte_A 283 IG--LPEPKTDDIFQGLTQ-----------------DQGFYTSKDFLPLVAKSSK------------AGM--CACHSPLP 329 (1025)
T ss_dssp CC--CCEECCCGGGTTCCT-----------------TTTEEEHHHHHHHHHHHHC------------BTT--BSCCCCCC
T ss_pred cC--CCCCCCCCCCCCCCC-----------------CCCEEEhHHHHHHHHhhcc------------ccc--cccccccc
Confidence 99 5 4665554 23110 011111 111110000000 000 00000010
Q ss_pred cccccceeEeeceeeeecCCCCCCCCcccchhhhcccc-cEEEEccccCC-cccccC-------CC--CeEEcCCceEEc
Q psy12350 245 EFRKDKYKIINEKAFVRDPGAANGPSGLDITHDISTEA-TTVFLSHHSEH-VKKLRF-------PN--NVVKKPDIAELT 313 (1129)
Q Consensus 245 ~~~~~~~~vi~~~~~v~~~~vGgG~sg~e~A~~l~~~~-~~V~lv~r~~~-~~~~~~-------~~--~i~~~~~v~~~~ 313 (1129)
...++++ | ||||++|+|+|..+++.| ++||+++|++. +++... .. ++.....++++.
T Consensus 330 -~~~~~Vv-------V----IGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~~~~~~Gv~~~~~~~~~~i~ 397 (1025)
T 1gte_A 330 -SIRGAVI-------V----LGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEEKCEFLPFLSPRKVI 397 (1025)
T ss_dssp -CCCSEEE-------E----ECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHHHTTCEEECSEEEEEEE
T ss_pred -ccCCcEE-------E----ECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHHHHHHcCCEEEeCCCceEEE
Confidence 0123333 3 899999999999999998 49999999873 322111 01 233344455554
Q ss_pred C--Cc---eEEc------CC---------CEeecCEEEEccccccc-CCCCCCCCCeEeecCcccccccccccCCCCCeE
Q psy12350 314 P--TG---VRFQ------DG---------SYEQVDIILYCTGYTYR-YPFLHESCGIKVVNKNVQPLYKHLINIEHPSMC 372 (1129)
Q Consensus 314 ~--~~---v~~~------dg---------~~~~~D~VI~atG~~~~-~~~l~~~~~~~~~~~~~~~l~~~~~~~~~p~l~ 372 (1129)
+ +. |.+. +| .++++|.||+|+|++++ ..++.+..++.++++..+......+.++.|++|
T Consensus 398 ~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~Vf 477 (1025)
T 1gte_A 398 VKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVF 477 (1025)
T ss_dssp EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEE
T ss_pred ccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEE
Confidence 2 21 3332 22 25799999999999864 444432234555544433332222336789999
Q ss_pred Eecccccccc--cccccceeeehhhcccccc
Q psy12350 373 IIGYTYRYPF--LHESCGIKVVNKNVQPLYK 401 (1129)
Q Consensus 373 ~~G~~~~~~~--~~~~~~~~~~a~~~~~~~~ 401 (1129)
++|.....|. ..+..||+.+|.++.+.+.
T Consensus 478 A~GD~~~~~~~~~~A~~~G~~aA~~i~~~L~ 508 (1025)
T 1gte_A 478 AGGDIVGMANTTVESVNDGKQASWYIHKYIQ 508 (1025)
T ss_dssp ECSGGGCSCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 9998865322 3344788888888876554
No 172
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=99.66 E-value=6.3e-18 Score=198.43 Aligned_cols=137 Identities=7% Similarity=0.065 Sum_probs=92.8
Q ss_pred CCCCCCc------ccchhhh----cccc----cEEEEccccCCcccccC---C--------------CCeEEcCCceEEc
Q psy12350 265 AANGPSG------LDITHDI----STEA----TTVFLSHHSEHVKKLRF---P--------------NNVVKKPDIAELT 313 (1129)
Q Consensus 265 vGgG~sg------~e~A~~l----~~~~----~~V~lv~r~~~~~~~~~---~--------------~~i~~~~~v~~~~ 313 (1129)
||+|++| +|+|..+ .+.+ .+|+++++.+.+..... + -++..+..|++++
T Consensus 148 VGgG~~~~~~G~~~E~a~~la~~l~~~g~~~~~~V~~v~~~~~~~~~~l~~~~~~~~~l~~~l~~~GV~i~~~~~v~~v~ 227 (430)
T 3h28_A 148 IGAIPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIE 227 (430)
T ss_dssp EEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEEC
T ss_pred EEcCCCCCcCcHHHHHHHHHHHHHHHcCCccceEEEEecCCccccccccCcchHHHHHHHHHHHHCCCEEEeCCEEEEEe
Confidence 6887765 8888544 4445 47999998876522111 1 1455678899999
Q ss_pred CCceEEcC----CCEeecCEEEEcccccccCCCCCCC-CCeEeecCc-ccccccccccCCCCCeEEeccccccc------
Q psy12350 314 PTGVRFQD----GSYEQVDIILYCTGYTYRYPFLHES-CGIKVVNKN-VQPLYKHLINIEHPSMCIIGYTYRYP------ 381 (1129)
Q Consensus 314 ~~~v~~~d----g~~~~~D~VI~atG~~~~~~~l~~~-~~~~~~~~~-~~~l~~~~~~~~~p~l~~~G~~~~~~------ 381 (1129)
++++++++ |+++++|.||+|+|+++. +++.+. .++ .+++. .+....++..+++|++|.+|.....|
T Consensus 228 ~~~v~~~~~~~~g~~i~~D~vv~a~G~~~~-~~l~~~~~gl-~~~~G~~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~~~~ 305 (430)
T 3h28_A 228 PDKVIYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKV-ANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTP 305 (430)
T ss_dssp SSEEEEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTT-BCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCS
T ss_pred CCeEEEEecCCCceEEeeeEEEECCCCccc-hhHhhccccC-cCCCCCEEecCccccCCCCCCEEEEEeeeccCCccCCC
Confidence 98899988 778999999999999865 333322 234 34444 44444444445789999999875421
Q ss_pred --------ccccccceeeehhhcccccccc
Q psy12350 382 --------FLHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 382 --------~~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
......|++.+|.++.+.+.|+
T Consensus 306 ~~~~~pk~~~~A~~~g~~aa~ni~~~l~g~ 335 (430)
T 3h28_A 306 IPTGVPKTGMMIEQMAMAVAHNIVNDIRNN 335 (430)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 1223488999999999888776
No 173
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=99.65 E-value=7.8e-17 Score=187.68 Aligned_cols=128 Identities=16% Similarity=0.161 Sum_probs=82.7
Q ss_pred cchhhhccc--ccEEEEccccCCcccc-------------cCC-C--CeEEcCCceEEcCC----ceEEcCCCEeecCEE
Q psy12350 273 DITHDISTE--ATTVFLSHHSEHVKKL-------------RFP-N--NVVKKPDIAELTPT----GVRFQDGSYEQVDII 330 (1129)
Q Consensus 273 e~A~~l~~~--~~~V~lv~r~~~~~~~-------------~~~-~--~i~~~~~v~~~~~~----~v~~~dg~~~~~D~V 330 (1129)
++|..+... ..+|+++++.+.+... .+. . ++..+..++.++.+ .|.++||+++++|.|
T Consensus 171 ~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~v 250 (401)
T 3vrd_B 171 QIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKTDTEAMTVETSFGETFKAAVI 250 (401)
T ss_dssp HHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEEETTTTEEEETTSCEEECSEE
T ss_pred HHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEecccceEEEcCCCcEEEeeEE
Confidence 344444433 3789999887765221 111 1 34556667766532 388899999999999
Q ss_pred EEcccccccCCCCCCCCCeEeecCccccccccc-ccCCCCCeEEeccccc-ccc----cccccceeeehhhcccccccc
Q psy12350 331 LYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHL-INIEHPSMCIIGYTYR-YPF----LHESCGIKVVNKNVQPLYKHL 403 (1129)
Q Consensus 331 I~atG~~~~~~~l~~~~~~~~~~~~~~~l~~~~-~~~~~p~l~~~G~~~~-~~~----~~~~~~~~~~a~~~~~~~~~~ 403 (1129)
++|+|.+++ +++.+ .++ .+++..+...+++ ..+++|++|.+|.... .|. ....+||+.+|+++.+.+.|+
T Consensus 251 i~~~g~~~~-~~~~~-~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~~A~~qa~v~A~ni~~~l~G~ 326 (401)
T 3vrd_B 251 NLIPPQRAG-KIAQS-ASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAYSANSQAKVAAAAVVALLKGE 326 (401)
T ss_dssp EECCCEEEC-HHHHH-TTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHHHHHHHHHHHHHHHHHHHHTC
T ss_pred EEecCcCCc-hhHhh-ccc-cccCCCEEECCCcceecCCCCEEEecccccCCCCCchHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999876 44442 233 2344444444443 3578899999998642 221 223489999999999988876
No 174
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=99.65 E-value=4.8e-16 Score=182.71 Aligned_cols=278 Identities=13% Similarity=0.128 Sum_probs=156.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-cCCCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGYGH 819 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~~~ 819 (1129)
+++|||+|++|+.+|..|.+.|++.+|+|||+++.+||.|.+...|.. +....+...+.....+.-..+ .+...
T Consensus 8 ~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~-----~~~~~~~~~~~~~~~~~gv~~~~~~~v 82 (460)
T 1cjc_A 8 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDH-----PEVKNVINTFTQTARSDRCAFYGNVEV 82 (460)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTC-----GGGGGHHHHHHHHHTSTTEEEEBSCCB
T ss_pred eEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCC-----ccHHHHHHHHHHHHHhCCcEEEeeeEE
Confidence 579999999999999999999877899999999999999976422211 000000000000000000000 00000
Q ss_pred CCCCCC----CCCChhhhhhccCCC-CCCCCCCCCCCCCcEEeeccC----------CCC-CCCCCCeEEEEcCCccHHH
Q psy12350 820 KGNADK----SYIGAKDVLENYNHP-IYPEFKGKDMCQIPILHSRDY----------RTP-EPFAGKQAVVVGSGQSGLD 883 (1129)
Q Consensus 820 ~~~~~~----~~~~~~~v~~~~~~P-~~P~i~G~~~f~g~~~hs~~~----------~~~-~~~~gk~VvVVG~G~Sg~e 883 (1129)
... .. .+.....++.+|+.| +.|++||.+ .+ .++++.++ ... .++.+|+|+|||+|++|+|
T Consensus 83 ~~~-V~~~~~~~~~d~lVlAtGs~~~~~~~ipG~~-~~-gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e 159 (460)
T 1cjc_A 83 GRD-VTVQELQDAYHAVVLSYGAEDHQALDIPGEE-LP-GVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALD 159 (460)
T ss_dssp TTT-BCHHHHHHHSSEEEECCCCCEECCCCCTTTT-ST-TEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHH
T ss_pred eeE-EEeccceEEcCEEEEecCcCCCCCCCCCCCC-CC-cEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHH
Confidence 000 00 000111222399985 889999985 33 36665444 111 2457899999999999999
Q ss_pred HHHHHH--------------------hcCC-EEEEEecCCCCc-cchh-hhhc---ccc-EEEEe-cC------------
Q psy12350 884 ITLDIA--------------------TTGK-QAVVVGSGQSGL-DITL-DIAT---RAS-TVFLS-HH------------ 923 (1129)
Q Consensus 884 iA~~la--------------------~~~~-~V~vv~~~~~~~-~~~~-~~~~---~~~-~~~~~-~~------------ 923 (1129)
+|..|+ +.+. +|+++.+..... .+++ .+.. ... +..+. ..
T Consensus 160 ~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~ 239 (460)
T 1cjc_A 160 VARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAA 239 (460)
T ss_dssp HHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSC
T ss_pred HHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhcc
Confidence 999999 4565 899998865431 1100 0000 000 00000 00
Q ss_pred -----Cccc----ccc-----------CCCCCeEEcCC--eeEEeCC-------cEEec---------------CC--cE
Q psy12350 924 -----SERV----TSL-----------CLPNNVVLKPD--VAELTPT-------GVRFQ---------------DG--SY 957 (1129)
Q Consensus 924 -----~~~~----~~~-----------~~~~~V~~~~~--i~~v~~~-------~V~~~---------------dG--~~ 957 (1129)
..+. ... .-+.+|+++.. +.++.++ +|++. +| ++
T Consensus 240 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~ 319 (460)
T 1cjc_A 240 RPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVED 319 (460)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEE
Confidence 0000 000 00125666554 5666432 24443 35 46
Q ss_pred eeccEEEEccCccCcCCCCCCCCCe-eecCCcccccccceeecCCCCcEEEccccccc--hhHHHHHHHHHHHHHHc
Q psy12350 958 EQVDIILCCTGYSNHYPFLHESCGI-KVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 958 ~~~D~VI~aTG~~~~~~fl~~~~g~-~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e~qa~~~a~~l~ 1031 (1129)
+++|.||+|+||+++. + .|+ ++++++......+....+.|+||++|++.... .+..+..||+.+|..+.
T Consensus 320 i~~d~Vi~a~G~~p~~--l---~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~ 391 (460)
T 1cjc_A 320 LPCGLVLSSIGYKSRP--I---DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILL 391 (460)
T ss_dssp EECSEEEECCCEECCC--C---CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHH
T ss_pred EEcCEEEECCCCCCCC--C---CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHH
Confidence 8999999999999984 3 355 56543332233333333379999999987532 35678888888887765
No 175
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=99.63 E-value=5.1e-17 Score=189.63 Aligned_cols=270 Identities=14% Similarity=0.108 Sum_probs=161.0
Q ss_pred CccccccCCchhhHHHHHHh---hCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCcccccccc--------
Q psy12350 741 PNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPK-------- 809 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~-------- 809 (1129)
.++|||+|++|+++|..|++ .| ++|+|+|+++..+.......... +..........+.....+
T Consensus 3 ~VvIIGgG~aGl~aA~~L~~~~~~g--~~V~vie~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gv~~~~~ 76 (409)
T 3h8l_A 3 KVLVLGGRFGALTAAYTLKRLVGSK--ADVKVINKSRFSYFRPALPHVAI----GVRDVDELKVDLSEALPEKGIQFQEG 76 (409)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHGGG--SEEEEEESSSEEEECCSSCCCCS----SCCCCCCEEEEHHHHTGGGTCEEEEC
T ss_pred eEEEECCCHHHHHHHHHHHhhCCCC--CeEEEEeCCCCceeccchhhccc----CCcCHHHHHHHHHHHHhhCCeEEEEe
Confidence 57899999999999999999 67 99999999987654322111110 000000000000000000
Q ss_pred cccccc--CCCCCCCCCCC----CCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCC------CCeEEEEcC
Q psy12350 810 DLMELC--GYGHKGNADKS----YIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFA------GKQAVVVGS 877 (1129)
Q Consensus 810 ~~~~~~--~~~~~~~~~~~----~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~------gk~VvVVG~ 877 (1129)
...... ........... +.....++.+|+.|+.|.+||+++ ...|...+.+...+. .++++|||+
T Consensus 77 ~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~---~~~~~~~~~~~~~~~~~l~~~~~~~vViG~ 153 (409)
T 3h8l_A 77 TVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDK---YGYSVCEPEFATKLREKLESFQGGNIAIGS 153 (409)
T ss_dssp EEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHH---HCEESSSTTHHHHHHHHHHHCCSEEEEEEE
T ss_pred eEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhh---cCcCcCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 000000 00000000000 222334455999999999999875 344555444332221 266779999
Q ss_pred C-------------------c------cHHHHHHHHH----hcC----CEEEEEecCCCCccchhhhhccccEEEEecCC
Q psy12350 878 G-------------------Q------SGLDITLDIA----TTG----KQAVVVGSGQSGLDITLDIATRASTVFLSHHS 924 (1129)
Q Consensus 878 G-------------------~------Sg~eiA~~la----~~~----~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1129)
| . .|+|+|..++ +.| .+|+++.+.+....+.+.+.....+.+.
T Consensus 154 G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~---- 229 (409)
T 3h8l_A 154 GPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYN---- 229 (409)
T ss_dssp CCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHH----
T ss_pred cccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHH----
Confidence 9 2 3788886554 456 4899998866211122222211111110
Q ss_pred ccccccCCCCCeEEcCC--eeEEeCCcEEecCCcEeeccEEEEccCccCcCCCCCCC-CCeeecCCcccccccceeecCC
Q psy12350 925 ERVTSLCLPNNVVLKPD--VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHES-CGIKVVNKNVQPLYKHTINIEH 1001 (1129)
Q Consensus 925 ~~~~~~~~~~~V~~~~~--i~~v~~~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~-~g~~~~~~~~~~ly~~~~~~~~ 1001 (1129)
..+|+++.+ |+++++++|+++||+++++|.||+|+|++++ +++... .++ .++++...+...+..+++
T Consensus 230 --------~~gV~~~~~~~v~~i~~~~v~~~~g~~~~~D~vi~a~G~~~~-~~l~~~~~~l-~~~~G~i~vd~~~~~~~~ 299 (409)
T 3h8l_A 230 --------QLGIKLVHNFKIKEIREHEIVDEKGNTIPADITILLPPYTGN-PALKNSTPDL-VDDGGFIPTDLNMVSIKY 299 (409)
T ss_dssp --------HHTCEEECSCCEEEECSSEEEETTSCEEECSEEEEECCEECC-HHHHTSCGGG-SCTTSCBCBBTTSBBSSC
T ss_pred --------HCCCEEEcCCceEEECCCeEEECCCCEEeeeEEEECCCCCcc-HHHHhccccC-cCCCCCEEeCcccccCCC
Confidence 126777754 9999999999999999999999999999997 556542 133 233343455555556689
Q ss_pred CCcEEEcccccc---chhHHHHHHHHHHHHHHcCC
Q psy12350 1002 PTMFILGVPRHT---LLFNLFDLQVRLFQQLMQGH 1033 (1129)
Q Consensus 1002 p~l~~iG~~~~~---~~~~~~e~qa~~~a~~l~g~ 1033 (1129)
||||++|++... .....++.||+.+|+.+.+.
T Consensus 300 ~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~ 334 (409)
T 3h8l_A 300 DNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANR 334 (409)
T ss_dssp TTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 999999998752 45688999999999988643
No 176
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=99.63 E-value=6.8e-17 Score=192.37 Aligned_cols=185 Identities=11% Similarity=0.126 Sum_probs=119.4
Q ss_pred hccCCCCCCCCCCCC--CCCCcEEeeccCCCCCC-----CCCCeEEEEcCCccHHHHHHHHHh----cCCEEEEEecCCC
Q psy12350 835 ENYNHPIYPEFKGKD--MCQIPILHSRDYRTPEP-----FAGKQAVVVGSGQSGLDITLDIAT----TGKQAVVVGSGQS 903 (1129)
Q Consensus 835 ~~~~~P~~P~i~G~~--~f~g~~~hs~~~~~~~~-----~~gk~VvVVG~G~Sg~eiA~~la~----~~~~V~vv~~~~~ 903 (1129)
.+|+.|+.|+++|.. .+...+.+.....+... ..+|+|+|||+|.+|+|+|..|++ .+.+|+++.+.+.
T Consensus 139 ATGs~p~~~~~~~~~~~~~~~~v~~~~~~~d~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~ 218 (493)
T 1m6i_A 139 ATGGTPRSLSAIDRAGAEVKSRTTLFRKIGDFRSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG 218 (493)
T ss_dssp CCCEEECCCHHHHTSCHHHHHTEEECCSHHHHHHHHHHHHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCCCCCCCCCCcccccccccCceEEEcCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcc
Confidence 399999988766532 11123333222211111 148999999999999999999987 4788999977543
Q ss_pred Ccc--chhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--C--cEEecCCcEeeccEEEEccCccCcCCC
Q psy12350 904 GLD--ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--T--GVRFQDGSYEQVDIILCCTGYSNHYPF 975 (1129)
Q Consensus 904 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~--~V~~~dG~~~~~D~VI~aTG~~~~~~f 975 (1129)
.+. +.+.+.....+ .+. ..+|+++.+ |.+++. + .|++.||+++++|.||+|+|++|+.++
T Consensus 219 ~~~~~l~~~~~~~~~~---------~l~---~~GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~l 286 (493)
T 1m6i_A 219 NMGKILPEYLSNWTME---------KVR---REGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVEL 286 (493)
T ss_dssp TTTTTSCHHHHHHHHH---------HHH---TTTCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred cccccCCHHHHHHHHH---------HHH---hcCCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHHH
Confidence 221 11111111111 111 226777654 788853 2 377889999999999999999999887
Q ss_pred CCCCCCeeecC-CcccccccceeecCCCCcEEEcccccc----------chhHHHHHHHHHHHHHHcCCC
Q psy12350 976 LHESCGIKVVN-KNVQPLYKHTINIEHPTMFILGVPRHT----------LLFNLFDLQVRLFQQLMQGHI 1034 (1129)
Q Consensus 976 l~~~~g~~~~~-~~~~~ly~~~~~~~~p~l~~iG~~~~~----------~~~~~~e~qa~~~a~~l~g~~ 1034 (1129)
+.. .|+++++ ++...+..++. + .||||++|++... ..++.+..||+.+|+.+.|..
T Consensus 287 ~~~-~gl~~~~~~ggi~Vd~~l~-t-~~~IyA~GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g~~ 353 (493)
T 1m6i_A 287 AKT-GGLEIDSDFGGFRVNAELQ-A-RSNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTGAA 353 (493)
T ss_dssp HHH-HTCCBCTTTCSEECCTTCE-E-ETTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTSCC
T ss_pred HHH-cCCccccCCCcEEECCCcc-c-CCCeeEeeeeEeccCcccCccccchHHHHHHHHHHHHHHhcCCC
Confidence 653 5666664 12222333322 2 4999999998642 135689999999999998753
No 177
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Probab=99.63 E-value=1.1e-16 Score=198.15 Aligned_cols=259 Identities=16% Similarity=0.222 Sum_probs=161.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC-CCCCCCCCCCccccccCccccccccccccccCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE-HIGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYG 818 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~-~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~~~ 818 (1129)
.+++|||+|++|+.+|..|.+.| ++|+|||+++.+||+|.... .++.. . +..+.......+..+ +..
T Consensus 374 ~~vvIIGgG~AGl~aA~~l~~~g--~~V~lie~~~~~gg~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~~-gv~ 441 (671)
T 1ps9_A 374 KNLAVVGAGPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKE--------E-FYETLRYYRRMIEVT-GVT 441 (671)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSCTTHHHHTTSTTCT--------T-HHHHHHHHHHHHHHH-TCE
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCCCeeeccccCCCHH--------H-HHHHHHHHHHHHHHc-CCE
Confidence 36789999999999999999999 99999999999999987432 12210 0 000000000000000 000
Q ss_pred C--CCC-CCCCC-CChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCE
Q psy12350 819 H--KGN-ADKSY-IGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQ 894 (1129)
Q Consensus 819 ~--~~~-~~~~~-~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~ 894 (1129)
+ ... ..... .....++.+|+.|+.|++||.+. ..++++.++.+.....+|+|+|||+|.+|+|+|..|++.|.+
T Consensus 442 ~~~~~~v~~~~~~~~d~lviAtG~~p~~~~i~G~~~--~~v~~~~~~l~~~~~~~~~VvVIGgG~~g~E~A~~l~~~G~~ 519 (671)
T 1ps9_A 442 LKLNHTVTADQLQAFDETILASGIVPRTPPIDGIDH--PKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGES 519 (671)
T ss_dssp EEESCCCCSSSSCCSSEEEECCCEEECCCCCBTTTS--TTEEEHHHHHTSCCCCCSEEEEECCHHHHHHHHHHHTCCSSC
T ss_pred EEeCcEecHHHhhcCCEEEEccCCCcCCCCCCCCCC--CcEeeHHHHhhCCCCCCCeEEEECCChhHHHHHHHHHhcCCC
Confidence 0 000 01112 33455666999999999999875 457787776655556799999999999999999999999877
Q ss_pred EEEEec---CCCCcc-----------chhhhhccccEEEEecCCccccc------------c-CCCCCeEEcCC--eeEE
Q psy12350 895 AVVVGS---GQSGLD-----------ITLDIATRASTVFLSHHSERVTS------------L-CLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 895 V~vv~~---~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~------------~-~~~~~V~~~~~--i~~v 945 (1129)
|+++.. ..++.+ ..+.......++.+-.+....+. . ....+|+++.+ ++++
T Consensus 520 vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i 599 (671)
T 1ps9_A 520 TSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKI 599 (671)
T ss_dssp GGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEE
T ss_pred cccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHHhcCCEEEeCcEEEEE
Confidence 764200 000000 00000001122222111100010 0 01237888766 8899
Q ss_pred eCCcEEe-cCC--cEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHH
Q psy12350 946 TPTGVRF-QDG--SYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFD 1020 (1129)
Q Consensus 946 ~~~~V~~-~dG--~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e 1020 (1129)
+++++++ .+| +++++|.||+|||++|+..++.. ++ ...+++|++|++.... ....+.
T Consensus 600 ~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~l~~~-----l~-------------~~g~~v~aiGD~~~~~~~~~~~A~ 661 (671)
T 1ps9_A 600 DDDGLHVVINGETQVLAVDNVVICAGQEPNRALAQP-----LI-------------DSGKTVHLIGGCDVAMELDARRAI 661 (671)
T ss_dssp ETTEEEEEETTEEEEECCSEEEECCCEEECCTTHHH-----HH-------------TTTCCEEECGGGTCCSSCCHHHHH
T ss_pred eCCeEEEecCCeEEEEeCCEEEECCCccccHHHHHH-----HH-------------hcCCCEEEECCcCccCchhHHHHH
Confidence 8888877 688 56899999999999998765542 11 0236899999987654 367889
Q ss_pred HHHHHHHHHH
Q psy12350 1021 LQVRLFQQLM 1030 (1129)
Q Consensus 1021 ~qa~~~a~~l 1030 (1129)
.||..+|+.|
T Consensus 662 ~~g~~aA~~i 671 (671)
T 1ps9_A 662 AQGTRLALEI 671 (671)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhC
Confidence 9999998763
No 178
>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*
Probab=99.61 E-value=2e-17 Score=196.40 Aligned_cols=191 Identities=13% Similarity=0.100 Sum_probs=128.8
Q ss_pred hhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC----------------------CCCCCCeEEEEcCCccHHHHHHHH
Q psy12350 831 KDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP----------------------EPFAGKQAVVVGSGQSGLDITLDI 888 (1129)
Q Consensus 831 ~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~----------------------~~~~gk~VvVVG~G~Sg~eiA~~l 888 (1129)
.-|+++|+.|+.|.+||++++ .+..+...+. +.-..++++|||||++|+|+|.+|
T Consensus 160 ~LViAtGs~~~~~~ipG~~e~---a~~l~t~~dA~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l 236 (502)
T 4g6h_A 160 YLISAVGAEPNTFGIPGVTDY---GHFLKEIPNSLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGEL 236 (502)
T ss_dssp EEEECCCCEECCTTCTTHHHH---CEECSSHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHH
T ss_pred EEEEcCCcccccCCccCcccc---cCCCCCHHHHHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHH
Confidence 345559999999999998652 1111111100 001135899999999999999999
Q ss_pred HhcC--------------CEEEEEecCCCCccch-hhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeCCcEE
Q psy12350 889 ATTG--------------KQAVVVGSGQSGLDIT-LDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTPTGVR 951 (1129)
Q Consensus 889 a~~~--------------~~V~vv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~~~V~ 951 (1129)
++.+ .+|++++..+..++.. +.+...+.+.+.. .+|+++.+ |++++++++.
T Consensus 237 ~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~~~~~~~~~~~~~L~~------------~GV~v~~~~~v~~v~~~~~~ 304 (502)
T 4g6h_A 237 QDYVHQDLRKFLPALAEEVQIHLVEALPIVLNMFEKKLSSYAQSHLEN------------TSIKVHLRTAVAKVEEKQLL 304 (502)
T ss_dssp HHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTTSCHHHHHHHHHHHHH------------TTCEEETTEEEEEECSSEEE
T ss_pred HHHHHHHHHhhcccccccceeEEeccccccccCCCHHHHHHHHHHHHh------------cceeeecCceEEEEeCCceE
Confidence 8643 5899999988776543 3333333322211 26777766 8999988865
Q ss_pred e----cCCc----EeeccEEEEccCccCcCCCCC---CCCCeeecCCcccccccceeecCCCCcEEEcccccc---chhH
Q psy12350 952 F----QDGS----YEQVDIILCCTGYSNHYPFLH---ESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT---LLFN 1017 (1129)
Q Consensus 952 ~----~dG~----~~~~D~VI~aTG~~~~~~fl~---~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~---~~~~ 1017 (1129)
+ .||+ ++++|.||||+|.+++ |++. ..++...++++...+...+..+++||||++||+... ...+
T Consensus 305 ~~~~~~dg~~~~~~i~ad~viwa~Gv~~~-~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~ 383 (502)
T 4g6h_A 305 AKTKHEDGKITEETIPYGTLIWATGNKAR-PVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQ 383 (502)
T ss_dssp EEEECTTSCEEEEEEECSEEEECCCEECC-HHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHH
T ss_pred EEEEecCcccceeeeccCEEEEccCCcCC-HHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchH
Confidence 4 4664 5899999999999997 3222 223334444443445555666789999999998653 3568
Q ss_pred HHHHHHHHHHHHHcCCCCCC
Q psy12350 1018 LFDLQVRLFQQLMQGHITLP 1037 (1129)
Q Consensus 1018 ~~e~qa~~~a~~l~g~~~lp 1037 (1129)
.+..||+++|++|.+....+
T Consensus 384 ~A~qqg~~~A~ni~~~~~~~ 403 (502)
T 4g6h_A 384 VAHQEAEYLAKNFDKMAQIP 403 (502)
T ss_dssp HHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhccc
Confidence 99999999999997654433
No 179
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=99.61 E-value=2.7e-16 Score=186.80 Aligned_cols=190 Identities=15% Similarity=0.136 Sum_probs=111.0
Q ss_pred hccCCCCCCCCCCCCCCCC--cEEeeccCCCC-CCC-----CCCeEEEEcCCccHHHHHHHHHhc--CCEEEEEecCCCC
Q psy12350 835 ENYNHPIYPEFKGKDMCQI--PILHSRDYRTP-EPF-----AGKQAVVVGSGQSGLDITLDIATT--GKQAVVVGSGQSG 904 (1129)
Q Consensus 835 ~~~~~P~~P~i~G~~~f~g--~~~hs~~~~~~-~~~-----~gk~VvVVG~G~Sg~eiA~~la~~--~~~V~vv~~~~~~ 904 (1129)
.+|+.|++|+. ++.|.+ .++|+..+.+. ..+ .+|+|+|||+|.||+|+|.+|++. +.+|+++.+.+..
T Consensus 187 AtG~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~ 264 (463)
T 3s5w_A 187 SPGGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL 264 (463)
T ss_dssp CCCCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred CCCCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence 38888888862 344556 79999888652 344 689999999999999999999999 9999999987765
Q ss_pred ccch----------hhhhcc-------ccEEEEecC----C----------------ccccccCCCCCeEEcCC--eeEE
Q psy12350 905 LDIT----------LDIATR-------ASTVFLSHH----S----------------ERVTSLCLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 905 ~~~~----------~~~~~~-------~~~~~~~~~----~----------------~~~~~~~~~~~V~~~~~--i~~v 945 (1129)
++.. +.+... .+..++... + ...+. -..+|++..+ |+++
T Consensus 265 ~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~v~i~~~~~v~~v 342 (463)
T 3s5w_A 265 KPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVS--GIPRHAFRCMTTVERA 342 (463)
T ss_dssp CBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHH--CCCCSEEETTEEEEEE
T ss_pred cCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhc--CCCCeEEEeCCEEEEE
Confidence 4321 000000 000000000 0 00000 0136777765 7777
Q ss_pred eCC--c--EEec---CCcE--eeccEEEEccCccCc--CCCCCCCCCeeecCCccccccccee-ec-CCCCcEEEccccc
Q psy12350 946 TPT--G--VRFQ---DGSY--EQVDIILCCTGYSNH--YPFLHESCGIKVVNKNVQPLYKHTI-NI-EHPTMFILGVPRH 1012 (1129)
Q Consensus 946 ~~~--~--V~~~---dG~~--~~~D~VI~aTG~~~~--~~fl~~~~g~~~~~~~~~~ly~~~~-~~-~~p~l~~iG~~~~ 1012 (1129)
+.+ + |.+. +|+. +++|.||+|||++++ .++|.. +...+ +....+.+..+. .. ..|+||++|++..
T Consensus 343 ~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~~-l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~ 420 (463)
T 3s5w_A 343 TATAQGIELALRDAGSGELSVETYDAVILATGYERQLHRQLLEP-LAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQA 420 (463)
T ss_dssp EEETTEEEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTGG-GGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCHH
T ss_pred EecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhHH-HHHHh-CCcccCcccccccCCCCCCeEEEcCCCcc
Confidence 543 2 6665 7775 899999999999999 567664 21111 111111111211 11 2578999999753
Q ss_pred c-----c-hhHHHHHHHHHHHHHH
Q psy12350 1013 T-----L-LFNLFDLQVRLFQQLM 1030 (1129)
Q Consensus 1013 ~-----~-~~~~~e~qa~~~a~~l 1030 (1129)
. + .-..+..+++.++.++
T Consensus 421 ~~g~~~~~l~~~a~r~~~i~~~~~ 444 (463)
T 3s5w_A 421 SHGLSDTLLSVLPVRAEEISGSLY 444 (463)
T ss_dssp HHCTTTTSSTTHHHHHHHHHHHHH
T ss_pred cCCcCccchhHHHHHHHHHHHHHH
Confidence 2 1 1234445555554444
No 180
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Probab=99.58 E-value=3.2e-16 Score=184.25 Aligned_cols=271 Identities=10% Similarity=0.059 Sum_probs=158.4
Q ss_pred cCccccccCCchhhHHHHHHh---hCCCcceEEEcccCCcCcccccCCC-CCCCCCCCCccccccCccccccc-------
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQADNIGGTWLYTEH-IGCDQYGLPVHSSMYKSLKTNLP------- 808 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~~~GG~w~~~~~-~g~~~~g~p~~~~~y~~~~~~~~------- 808 (1129)
.+++|||+|++|+++|..|++ .| ++|+|+|+++.....-..... .+.. . .......+.....
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~~~~~g--~~Vtlie~~~~~~~~~~~~~~~~g~~----~-~~~~~~~l~~~~~~~gv~~~ 77 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKEALGSG--HEVTLISANDYFQFVPSNPWVGVGWK----E-RDDIAFPIRHYVERKGIHFI 77 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHHGGG--SEEEEECSSSEEECGGGHHHHHHTSS----C-HHHHEEECHHHHHTTTCEEE
T ss_pred CcEEEECCcHHHHHHHHHHhccCCCc--CEEEEEeCCCCCcccCCccccccCcc----C-HHHHHHHHHHHHHHCCCEEE
Confidence 468999999999999999998 66 999999998854211000000 0000 0 0000000000000
Q ss_pred -ccccccc--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCC--------CCCeEEEEcC
Q psy12350 809 -KDLMELC--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPF--------AGKQAVVVGS 877 (1129)
Q Consensus 809 -~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~--------~gk~VvVVG~ 877 (1129)
....... .-.........+.....++.+|+.|+.|.+||++.+.+..++.+.+.+...+ .+++++|||+
T Consensus 78 ~~~v~~id~~~~~V~~~~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGg 157 (437)
T 3sx6_A 78 AQSAEQIDAEAQNITLADGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGPIVIGA 157 (437)
T ss_dssp CSCEEEEETTTTEEEETTSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred EeEEEEEEcCCCEEEECCCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCEEEEEc
Confidence 0000000 0000000011122233444599999999999998765555554444332111 2567889999
Q ss_pred CccH------HHHHHHHH----hcCCE-----EEEEecCCCCccch----hhhhccccEEEEecCCccccccCCCCCeEE
Q psy12350 878 GQSG------LDITLDIA----TTGKQ-----AVVVGSGQSGLDIT----LDIATRASTVFLSHHSERVTSLCLPNNVVL 938 (1129)
Q Consensus 878 G~Sg------~eiA~~la----~~~~~-----V~vv~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 938 (1129)
|.+| +|+|.+++ +.+.+ |+++++.+....+. +.......+ .+. ..+|++
T Consensus 158 G~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~---------~l~---~~gI~~ 225 (437)
T 3sx6_A 158 MAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTK---------GLK---EEGIEA 225 (437)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHH---------HHH---HTTCEE
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHH---------HHH---HCCCEE
Confidence 7664 88885554 45553 99998876542211 111111111 111 126777
Q ss_pred cCC--eeEEeCCcEEecC---------CcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEE
Q psy12350 939 KPD--VAELTPTGVRFQD---------GSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFIL 1007 (1129)
Q Consensus 939 ~~~--i~~v~~~~V~~~d---------G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~i 1007 (1129)
+.+ |++++++++.+.+ |+++++|.|++|+|+.++.+ +.+..++ .++++...+..++..+++||||++
T Consensus 226 ~~~~~v~~v~~~~v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~-~~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~ 303 (437)
T 3sx6_A 226 YTNCKVTKVEDNKMYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPA-VAGVEGL-CNPGGFVLVDEHQRSKKYANIFAA 303 (437)
T ss_dssp ECSEEEEEEETTEEEEEEECTTSCEEEEEEEECSEEEEECCEECCHH-HHTSTTT-BCTTSCBCBCTTSBBSSCTTEEEC
T ss_pred EcCCEEEEEECCeEEEEecccCCccccceEEEEeEEEEcCCCcCchh-hhccccc-cCCCCcEEeChhccCCCCCCEEEE
Confidence 765 8999988887765 66789999999999998733 3333455 344444456666556689999999
Q ss_pred ccccccc-------------hhHHHHHHHHHHHHHHc
Q psy12350 1008 GVPRHTL-------------LFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1008 G~~~~~~-------------~~~~~e~qa~~~a~~l~ 1031 (1129)
|++.... ....+..||+.+|+++.
T Consensus 304 GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~ 340 (437)
T 3sx6_A 304 GIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIK 340 (437)
T ss_dssp GGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred EEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 9986531 35788999999888775
No 181
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=99.56 E-value=9.1e-15 Score=188.29 Aligned_cols=267 Identities=15% Similarity=0.137 Sum_probs=153.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccc-cCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMEL-CGY 817 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~-~~~ 817 (1129)
.+++|||+|++|+++|..|.+.| + +|+|||+++.+||++.+.. |. ++.+.. ..........+.-..+ .+.
T Consensus 188 ~~VvVIGgGpAGl~aA~~L~~~G--~~~Vtv~E~~~~~GG~~~~~i-p~---~~~~~~--~~~~~~~~~~~~gv~~~~~~ 259 (1025)
T 1gte_A 188 AKIALLGAGPASISCASFLARLG--YSDITIFEKQEYVGGLSTSEI-PQ---FRLPYD--VVNFEIELMKDLGVKIICGK 259 (1025)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSSSCSTHHHHTS-CT---TTSCHH--HHHHHHHHHHTTTCEEEESC
T ss_pred CEEEEECccHHHHHHHHHHHhcC--CCcEEEEeCCCCCCccccccC-Cc---ccCCHH--HHHHHHHHHHHCCcEEEccc
Confidence 46899999999999999999999 7 7999999999999986431 11 111100 0000000000000000 000
Q ss_pred CCCCCCC-----CCCCChhhhhhccC-CCCCCCC-CCCCCCCCcEEeeccCCC---------------CCCCCCCeEEEE
Q psy12350 818 GHKGNAD-----KSYIGAKDVLENYN-HPIYPEF-KGKDMCQIPILHSRDYRT---------------PEPFAGKQAVVV 875 (1129)
Q Consensus 818 ~~~~~~~-----~~~~~~~~v~~~~~-~P~~P~i-~G~~~f~g~~~hs~~~~~---------------~~~~~gk~VvVV 875 (1129)
....... ..+.....++.+|+ .|+.+++ +|++... .++++.+|.. .....+++|+||
T Consensus 260 ~v~~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~-gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVI 338 (1025)
T 1gte_A 260 SLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQ-GFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVL 338 (1025)
T ss_dssp CBSTTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTT-TEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEE
T ss_pred EeccceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCC-CEEEhHHHHHHHHhhcccccccccccccccCCcEEEE
Confidence 0000000 00111223334888 5887765 5765433 3555444311 112246799999
Q ss_pred cCCccHHHHHHHHHhcCC-EEEEEecCCC-CccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEeC--Cc
Q psy12350 876 GSGQSGLDITLDIATTGK-QAVVVGSGQS-GLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELTP--TG 949 (1129)
Q Consensus 876 G~G~Sg~eiA~~la~~~~-~V~vv~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~~--~~ 949 (1129)
|||.+|+|+|..+++.|. +||++.+... .++..+.....++ ..+|+++.. +.++.. +.
T Consensus 339 GgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~~~~~----------------~~Gv~~~~~~~~~~i~~~~g~ 402 (1025)
T 1gte_A 339 GAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAK----------------EEKCEFLPFLSPRKVIVKGGR 402 (1025)
T ss_dssp CSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHHHHHH----------------HTTCEEECSEEEEEEEEETTE
T ss_pred CCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHHHHHH----------------HcCCEEEeCCCceEEEccCCe
Confidence 999999999999999985 9999988652 2221111000000 013333322 333321 11
Q ss_pred ---EEec-------------CC--cEeeccEEEEccCccCc-CCCCCCCCCeeecCCcccccccceeecCCCCcEEEccc
Q psy12350 950 ---VRFQ-------------DG--SYEQVDIILCCTGYSNH-YPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVP 1010 (1129)
Q Consensus 950 ---V~~~-------------dG--~~~~~D~VI~aTG~~~~-~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~ 1010 (1129)
|++. +| .++++|.||+|+|++++ ..++.+..|+++++++...+....+.++.|+||++|++
T Consensus 403 v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~ 482 (1025)
T 1gte_A 403 IVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDI 482 (1025)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGG
T ss_pred EEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCC
Confidence 2221 22 35799999999999874 33444334777776554444433345689999999998
Q ss_pred ccc-chhHHHHHHHHHHHHHHc
Q psy12350 1011 RHT-LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1011 ~~~-~~~~~~e~qa~~~a~~l~ 1031 (1129)
... .....+..||+.+|+.+.
T Consensus 483 ~~~~~~~~~A~~~G~~aA~~i~ 504 (1025)
T 1gte_A 483 VGMANTTVESVNDGKQASWYIH 504 (1025)
T ss_dssp GCSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHHHHHH
Confidence 764 456778889999888775
No 182
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=99.54 E-value=6.1e-16 Score=197.72 Aligned_cols=260 Identities=14% Similarity=0.115 Sum_probs=163.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccC----------ccccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYK----------SLKTNLP 808 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~----------~~~~~~~ 808 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||+|.+ . +...-.+.+.. .... .......
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~~G--~~V~lie~~~~~GG~~~~-~-~k~~i~~~~~~-~~~~~~~~~l~~~~~v~~~~~ 202 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASRSG--ARVMLLDERAEAGGTLLD-T-AGEQIDGMDSS-AWIEQVTSELAEAEETTHLQR 202 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGGG-S-SCCEETTEEHH-HHHHHHHHHHHHSTTEEEESS
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CcEEEEeCCCCCCceecc-C-CccccCCCCHH-HHHHHHHHHHhhcCCcEEEeC
Confidence 347899999999999999999999 999999999999999983 1 10000000000 0000 0000000
Q ss_pred cccccc------------c-CCCCCC------CCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccC---CC-CC
Q psy12350 809 KDLMEL------------C-GYGHKG------NADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDY---RT-PE 865 (1129)
Q Consensus 809 ~~~~~~------------~-~~~~~~------~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~---~~-~~ 865 (1129)
...... . .+.... .....+.....|+.+|+.|+.|++||.+. . .++++..+ .+ ..
T Consensus 203 ~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~-~-gv~~~~~~~~~l~~~~ 280 (965)
T 2gag_A 203 TTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDR-P-GIMLAGAVRSYLNRYG 280 (965)
T ss_dssp EEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCS-T-TEEEHHHHHHHHHTTC
T ss_pred CEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCC-C-CEEEhHHHHHHHHhcC
Confidence 000000 0 000000 00001111233444999999999999864 3 36665332 11 23
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
...+|+|+|||+|.+|+|+|..|++.|.+|+++++.+..... . ..+. ..+|+++.+ +.
T Consensus 281 ~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~-------------~----~~l~---~~GV~v~~~~~v~ 340 (965)
T 2gag_A 281 VRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA-------------A----AQAV---ADGVQVISGSVVV 340 (965)
T ss_dssp EESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH-------------H----HHHH---HTTCCEEETEEEE
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh-------------H----HHHH---hCCeEEEeCCEeE
Confidence 346899999999999999999999999999999887654321 0 0111 125555544 77
Q ss_pred EEeC--C----cEEecC-------C--cEeeccEEEEccCccCcCCCCCC-CCCeeecCCccccccccee--ecCCCCcE
Q psy12350 944 ELTP--T----GVRFQD-------G--SYEQVDIILCCTGYSNHYPFLHE-SCGIKVVNKNVQPLYKHTI--NIEHPTMF 1005 (1129)
Q Consensus 944 ~v~~--~----~V~~~d-------G--~~~~~D~VI~aTG~~~~~~fl~~-~~g~~~~~~~~~~ly~~~~--~~~~p~l~ 1005 (1129)
++.+ + +|++.+ | +++++|.||+|+|++|+..++.. ..++.+++.. +.+ .++.|+||
T Consensus 341 ~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~~~~g~i~vd~~~------~~~v~~ts~p~Iy 414 (965)
T 2gag_A 341 DTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQGKLDWDTTI------HAFVPADAVANQH 414 (965)
T ss_dssp EEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHHHTTCCEEEETTT------TEEEECSCCTTEE
T ss_pred EEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHHhCCCcEEEcCcc------cccccCCCCCCEE
Confidence 7764 2 467764 5 56899999999999999876643 1234444321 222 26899999
Q ss_pred EEccccccchhHHHHHHHHHHHHHHc
Q psy12350 1006 ILGVPRHTLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1006 ~iG~~~~~~~~~~~e~qa~~~a~~l~ 1031 (1129)
++|++.....+..+..||+.+|..+.
T Consensus 415 AaGD~a~~~~l~~A~~~G~~aA~~i~ 440 (965)
T 2gag_A 415 LAGAMTGRLDTASALSTGAATGAAAA 440 (965)
T ss_dssp ECGGGGTCCSHHHHHHHHHHHHHHHH
T ss_pred EEEecCCchhHHHHHHHHHHHHHHHH
Confidence 99999876555688999999998875
No 183
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=99.46 E-value=4e-15 Score=174.54 Aligned_cols=272 Identities=11% Similarity=0.053 Sum_probs=150.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC-CCCCCCCCCccccccCcccccccc-----cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH-IGCDQYGLPVHSSMYKSLKTNLPK-----DLME 813 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~-~g~~~~g~p~~~~~y~~~~~~~~~-----~~~~ 813 (1129)
.+++|||+|++|+++|..|++.++.++|+|+|+++..++.-..... .+... .......+......... ....
T Consensus 3 ~~vvIIGgG~aGl~aA~~L~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~gv~~~~~~v~~ 80 (430)
T 3h28_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRK--FEDISVPLAPLLPKFNIEFINEKAES 80 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSC--GGGSEEESTTTGGGGTEEEECSCEEE
T ss_pred CCEEEECccHHHHHHHHHHHcCCCCCeEEEECCCCCCCcCCCcchhccCccC--HHHHHHHHHHHHHhcCCEEEEEEEEE
Confidence 3679999999999999999994434999999999877653211000 00000 00000000000000000 0000
Q ss_pred cc--CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCC--------CCCCeEEEEcCCccH--
Q psy12350 814 LC--GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEP--------FAGKQAVVVGSGQSG-- 881 (1129)
Q Consensus 814 ~~--~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~--------~~gk~VvVVG~G~Sg-- 881 (1129)
.. ...........+.....++.+|+.|.+| |++. .+...+...+.+... ..+++++|||+|.+|
T Consensus 81 id~~~~~v~~~~g~~i~~d~liiAtG~~~~~p---g~~~-~g~~~~~~~~~~a~~~~~~~~~~~~~~~~vVVGgG~~~~~ 156 (430)
T 3h28_A 81 IDPDANTVTTQSGKKIEYDYLVIATGPKLVFG---AEGQ-EENSTSICTAEHALETQKKLQELYANPGPVVIGAIPGVSC 156 (430)
T ss_dssp EETTTTEEEETTCCEEECSEEEECCCCEEECC---SBTH-HHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTCCC
T ss_pred EECCCCEEEECCCcEEECCEEEEcCCcccccC---CCCC-cCCccCcCCHHHHHHHHHHHHHHHhcCCeEEEEcCCCCCc
Confidence 00 0000000011122223344488887766 4331 121112111111111 125678899998765
Q ss_pred ----HHHHHHHH----hcC----CEEEEEecCCCCccc----hhhhhccccEEEEecCCccccccCCCCCeEEcCC--ee
Q psy12350 882 ----LDITLDIA----TTG----KQAVVVGSGQSGLDI----TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VA 943 (1129)
Q Consensus 882 ----~eiA~~la----~~~----~~V~vv~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~ 943 (1129)
+|+|..++ +.+ .+|+++.+.+....+ .+.......+ .+. ..+|+++.+ |+
T Consensus 157 ~G~~~E~a~~la~~l~~~g~~~~~~V~~v~~~~~~~~~~l~~~~~~~~~l~~---------~l~---~~GV~i~~~~~v~ 224 (430)
T 3h28_A 157 FGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVED---------LFA---ERNIDWIANVAVK 224 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHH---------HHH---HTTCEEECSCEEE
T ss_pred CcHHHHHHHHHHHHHHHcCCccceEEEEecCCccccccccCcchHHHHHHHH---------HHH---HCCCEEEeCCEEE
Confidence 89886654 445 478999876544221 1111111111 111 126777765 99
Q ss_pred EEeCCcEEecC----CcEeeccEEEEccCccCcCCCCCCC-CCeeecCCc-ccccccceeecCCCCcEEEcccccc----
Q psy12350 944 ELTPTGVRFQD----GSYEQVDIILCCTGYSNHYPFLHES-CGIKVVNKN-VQPLYKHTINIEHPTMFILGVPRHT---- 1013 (1129)
Q Consensus 944 ~v~~~~V~~~d----G~~~~~D~VI~aTG~~~~~~fl~~~-~g~~~~~~~-~~~ly~~~~~~~~p~l~~iG~~~~~---- 1013 (1129)
+++++++++++ |+++++|.||+|+|++++ +++.+. .++ .++++ ...+..++..+++||||++|++...
T Consensus 225 ~v~~~~v~~~~~~~~g~~i~~D~vv~a~G~~~~-~~l~~~~~gl-~~~~G~~i~Vd~~l~t~~~~~Ifa~GD~~~~~~~~ 302 (430)
T 3h28_A 225 AIEPDKVIYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKV-ANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIE 302 (430)
T ss_dssp EECSSEEEEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTT-BCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSS
T ss_pred EEeCCeEEEEecCCCceEEeeeEEEECCCCccc-hhHhhccccC-cCCCCCEEecCccccCCCCCCEEEEEeeeccCCcc
Confidence 99998898887 788999999999999986 445442 355 34444 4456665556699999999998653
Q ss_pred ---------chhHHHHHHHHHHHHHHc
Q psy12350 1014 ---------LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1014 ---------~~~~~~e~qa~~~a~~l~ 1031 (1129)
.....+..||+.+|+.+.
T Consensus 303 ~~~~~~~~pk~~~~A~~~g~~aa~ni~ 329 (430)
T 3h28_A 303 KTPIPTGVPKTGMMIEQMAMAVAHNIV 329 (430)
T ss_dssp CCSSCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHH
Confidence 135788888988887764
No 184
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=99.41 E-value=7.4e-14 Score=166.15 Aligned_cols=243 Identities=17% Similarity=0.165 Sum_probs=146.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCCCCCCCCCCCc-cccccCccccccccccc-----
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPV-HSSMYKSLKTNLPKDLM----- 812 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~-~~~~y~~~~~~~~~~~~----- 812 (1129)
..+++|||+|++|+++|.+|.+. ++|+|||+++.+||.|....+..+ |++. ...++..+.........
T Consensus 108 ~~dVvIIGgG~aGl~aA~~L~~~---~~V~vie~~~~~GG~~~~~~~~~~---g~~~~~~~~~~~l~~~l~~~v~~~~~~ 181 (493)
T 1y56_A 108 VVDVAIIGGGPAGIGAALELQQY---LTVALIEERGWLGGDMWLKGIKQE---GFNKDSRKVVEELVGKLNENTKIYLET 181 (493)
T ss_dssp EESCCEECCSHHHHHHHHHHTTT---CCEEEECTTSSSSCSGGGTCSEET---TTTEEHHHHHHHHHHTCCTTEEEETTE
T ss_pred cCCEEEECccHHHHHHHHHHHhc---CCEEEEeCCCCCCCeeeccccccC---CCCCCHHHHHHHHHHHHhcCCEEEcCC
Confidence 35789999999999999999876 899999999999999875432111 1110 00000000000000000
Q ss_pred cccCCCCCCC--------CC--CCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCC----CCCCCCCeEEEEcCC
Q psy12350 813 ELCGYGHKGN--------AD--KSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT----PEPFAGKQAVVVGSG 878 (1129)
Q Consensus 813 ~~~~~~~~~~--------~~--~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~----~~~~~gk~VvVVG~G 878 (1129)
.......... .. ..+.....++.+|+.|+.|++||.+. .| ++++.++.. .....+|+|+|||+|
T Consensus 182 ~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~-~g-v~~~~~~~~~~~~~~~~~~~~vvViGgG 259 (493)
T 1y56_A 182 SALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDM-PG-VFRRDFALEVMNVWEVAPGRKVAVTGSK 259 (493)
T ss_dssp EECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTS-TT-EEEHHHHHHHHHTSCBCSCSEEEEESTT
T ss_pred EEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCC-CC-EEEcHHHHHHHHhcccCCCCEEEEECCC
Confidence 0000000000 00 01111223344899999999999863 33 555443321 123457999999999
Q ss_pred ccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCCeeEEeCC----cEEecC
Q psy12350 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPT----GVRFQD 954 (1129)
Q Consensus 879 ~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~i~~v~~~----~V~~~d 954 (1129)
.+|+| ..+.+.|.++. ....+.++.++ .|.+.|
T Consensus 260 ~~gle--~~l~~~GV~v~-----------------------------------------~~~~v~~i~~~~~v~~v~~~~ 296 (493)
T 1y56_A 260 ADEVI--QELERWGIDYV-----------------------------------------HIPNVKRVEGNEKVERVIDMN 296 (493)
T ss_dssp HHHHH--HHHHHHTCEEE-----------------------------------------ECSSEEEEECSSSCCEEEETT
T ss_pred HHHHH--HHHHhCCcEEE-----------------------------------------eCCeeEEEecCCceEEEEeCC
Confidence 99999 33433332211 11124444332 266788
Q ss_pred CcEeeccEEEEccCccCcCCCCCCCCCeee--cCCcccc-cccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHc
Q psy12350 955 GSYEQVDIILCCTGYSNHYPFLHESCGIKV--VNKNVQP-LYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 955 G~~~~~D~VI~aTG~~~~~~fl~~~~g~~~--~~~~~~~-ly~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~ 1031 (1129)
|+++++|.||+|+|++|+..++.. +|+.+ +.++... +.... . +.|+||++|++........+..|++.+|..+.
T Consensus 297 g~~i~aD~Vv~a~G~~p~~~l~~~-~g~~~~~~~~g~i~~vd~~~-~-s~~~vya~GD~~~~~~~~~A~~~g~~aa~~i~ 373 (493)
T 1y56_A 297 NHEYKVDALIFADGRRPDINPITQ-AGGKLRFRRGYYSPVLDEYH-R-IKDGIYVAGSAVSIKPHYANYLEGKLVGAYIL 373 (493)
T ss_dssp CCEEECSEEEECCCEEECCHHHHH-TTCCEEEETTEEEECCCTTS-E-EETTEEECSTTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CeEEEeCEEEECCCcCcCchHHHh-cCCCccccCCceeecccccc-C-cCCCEEEEeccCCccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999776654 45443 3433322 22222 2 78999999999877677889999999999887
Q ss_pred CCCC
Q psy12350 1032 GHIT 1035 (1129)
Q Consensus 1032 g~~~ 1035 (1129)
+..-
T Consensus 374 ~~lg 377 (493)
T 1y56_A 374 KEFG 377 (493)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6543
No 185
>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*
Probab=99.32 E-value=5.5e-13 Score=155.06 Aligned_cols=274 Identities=13% Similarity=0.084 Sum_probs=146.3
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC-CCCCCCCCCccccccCcccccccc----cccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH-IGCDQYGLPVHSSMYKSLKTNLPK----DLMELC 815 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~-~g~~~~g~p~~~~~y~~~~~~~~~----~~~~~~ 815 (1129)
.++|||+|++|+++|.+|++.+++.+|+|+|+++........... .|... ...-...++.+....-+ ....+.
T Consensus 4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~--~~~~~~~~~~~~~~gv~~i~~~v~~id 81 (401)
T 3vrd_B 4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRE--LASLRVGYDGLRAHGIQVVHDSALGID 81 (401)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSC--GGGGEECSHHHHHTTCEEECSCEEEEE
T ss_pred EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCC--HHHHhhCHHHHHHCCCEEEEeEEEEEE
Confidence 478999999999999999999877899999998753211100000 00000 00000000000000000 000000
Q ss_pred --CCCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCC-cEEeeccCCC--------CCCCCCCeEEEEcCCc-----
Q psy12350 816 --GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQI-PILHSRDYRT--------PEPFAGKQAVVVGSGQ----- 879 (1129)
Q Consensus 816 --~~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g-~~~hs~~~~~--------~~~~~gk~VvVVG~G~----- 879 (1129)
...........+....-++.+|+.++.|.+||+++..+ ...|+....+ ...+...+.+|+++|.
T Consensus 82 ~~~~~v~~~~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~i~~ 161 (401)
T 3vrd_B 82 PDKKLVKTAGGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVVIIAPPAPPFRC 161 (401)
T ss_dssp TTTTEEEETTSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEEEEECCSSSCBC
T ss_pred ccCcEEEecccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcEEEecCCccEEe
Confidence 00000000111222233444999999999999876332 1222221111 0112233444444433
Q ss_pred --cHHHHHHHH----Hhc--CCEEEEEecCCCCccc---hhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEEe
Q psy12350 880 --SGLDITLDI----ATT--GKQAVVVGSGQSGLDI---TLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAELT 946 (1129)
Q Consensus 880 --Sg~eiA~~l----a~~--~~~V~vv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v~ 946 (1129)
.+.|++.++ .+. ..+|+++...+..... .+.+.....+ . ....+|+++.+ +..++
T Consensus 162 ~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~---------~---l~~~gi~v~~~~~v~~v~ 229 (401)
T 3vrd_B 162 PPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGF---------G---TENALIEWHPGPDAAVVK 229 (401)
T ss_dssp TTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCT---------T---STTCSEEEECTTTTCEEE
T ss_pred ehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHH---------H---HHhcCcEEEeCceEEEEE
Confidence 334444444 333 4689998876543221 1111111110 0 01225666654 55554
Q ss_pred C----CcEEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccce-eecCCCCcEEEcccccc----chhH
Q psy12350 947 P----TGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHT-INIEHPTMFILGVPRHT----LLFN 1017 (1129)
Q Consensus 947 ~----~~V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~-~~~~~p~l~~iG~~~~~----~~~~ 1017 (1129)
. ..++++||+++++|.|++|+|.+++ +++.. .++. ++++...+..++ .++++||||++||+... ....
T Consensus 230 ~~~~~~~v~~~~g~~i~~D~vi~~~g~~~~-~~~~~-~gl~-~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~pk~a~ 306 (401)
T 3vrd_B 230 TDTEAMTVETSFGETFKAAVINLIPPQRAG-KIAQS-ASLT-NDSGWCPVDIRTFESSLQPGIHVIGDACNAAPMPKSAY 306 (401)
T ss_dssp EETTTTEEEETTSCEEECSEEEECCCEEEC-HHHHH-TTCC-CTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTSCBSHH
T ss_pred ecccceEEEcCCCcEEEeeEEEEecCcCCc-hhHhh-cccc-ccCCCEEECCCcceecCCCCEEEecccccCCCCCchHH
Confidence 2 2488999999999999999999986 45543 5554 344444666664 46899999999998643 2457
Q ss_pred HHHHHHHHHHHHHc
Q psy12350 1018 LFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1018 ~~e~qa~~~a~~l~ 1031 (1129)
.+..||+.+|++|.
T Consensus 307 ~A~~qa~v~A~ni~ 320 (401)
T 3vrd_B 307 SANSQAKVAAAAVV 320 (401)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999988764
No 186
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=99.32 E-value=4.6e-13 Score=156.71 Aligned_cols=273 Identities=12% Similarity=0.098 Sum_probs=142.6
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC-CCCCCCCCCccccccCcccccccccccccc-CC-
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH-IGCDQYGLPVHSSMYKSLKTNLPKDLMELC-GY- 817 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~-~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~-~~- 817 (1129)
.++|||+|++|+.+|.+|++.+++++|+|+|+++...-+...... .|. .+... +...+.....+.-.+|- +.
T Consensus 4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~----~~~~~-i~~~~~~~~~~~gv~~i~~~v 78 (430)
T 3hyw_A 4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGW----RKFED-ISVPLAPLLPKFNIEFINEKA 78 (430)
T ss_dssp EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTC----SCGGG-SEEESTTTGGGGTEEEECSCE
T ss_pred cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCC----CCHHH-hhhcHHHHHHHCCcEEEEeEE
Confidence 478999999999999999998888999999998753210000000 000 00000 00000000000000000 00
Q ss_pred -CCCCC-------CCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCC-------CC-CCCCeEEEEcCCc--
Q psy12350 818 -GHKGN-------ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTP-------EP-FAGKQAVVVGSGQ-- 879 (1129)
Q Consensus 818 -~~~~~-------~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~-------~~-~~gk~VvVVG~G~-- 879 (1129)
.+..+ ....+....-|+++|+.+. +++||+++.. ...+...+. .+ ..++.++|+|++.
T Consensus 79 ~~Id~~~~~V~~~~g~~i~YD~LViAtG~~~~-~~i~G~~e~~---~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg~~gv 154 (430)
T 3hyw_A 79 ESIDPDANTVTTQSGKKIEYDYLVIATGPKLV-FGAEGQEENS---TSICTAEHALETQKKLQELYANPGPVVIGAIPGV 154 (430)
T ss_dssp EEEETTTTEEEETTCCEEECSEEEECCCCEEE-CCSBTHHHHS---CCCSSHHHHHHHHHHHHHHHHSCCCEEEEECTTC
T ss_pred EEEECCCCEEEECCCCEEECCEEEEeCCCCcc-CCccCcccCc---CCcccHHHHHHHHHHHHhhccCCceEEEeCCCcE
Confidence 00000 0111122233444888764 5688876421 111111110 01 1345566776653
Q ss_pred ----cHHHHHHHHH----hcC----CEEEEEecCCCCccchhhhhccccEEEEecCCccccccCCCCCeEEcCC--eeEE
Q psy12350 880 ----SGLDITLDIA----TTG----KQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD--VAEL 945 (1129)
Q Consensus 880 ----Sg~eiA~~la----~~~----~~V~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~--i~~v 945 (1129)
.+.|+|..++ +.+ .+|++++..+....+.+......++.+. +.+. ..+|+++.+ |+++
T Consensus 155 e~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~-----~~l~---~~GV~~~~~~~v~~v 226 (430)
T 3hyw_A 155 SCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVE-----DLFA---ERNIDWIANVAVKAI 226 (430)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHH-----HHHH---HTTCEEECSCEEEEE
T ss_pred EEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHH-----HHHH---hCCeEEEeCceEEEE
Confidence 2234544443 233 4677777655443332211111111000 0010 126777765 9999
Q ss_pred eCCcEEecC--C--cEeeccEEEEccCccCcCCCCCCC-CCeeecCCcccccccceeecCCCCcEEEcccccc-------
Q psy12350 946 TPTGVRFQD--G--SYEQVDIILCCTGYSNHYPFLHES-CGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT------- 1013 (1129)
Q Consensus 946 ~~~~V~~~d--G--~~~~~D~VI~aTG~~~~~~fl~~~-~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~------- 1013 (1129)
+++++.+.+ | +++++|.||+|+|.+++ +++... ..+..+.++...+...+.++++||||++||+...
T Consensus 227 ~~~~~~~~~~~g~~~~i~~d~vi~~~G~~~~-~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~~~~ 305 (430)
T 3hyw_A 227 EPDKVIYEDLNGNTHEVPAKFTMFMPSFQGP-EVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIEKTP 305 (430)
T ss_dssp CSSEEEEECTTSCEEEEECSEEEEECEEECC-HHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSSCCS
T ss_pred eCCceEEEeeCCCceEeecceEEEeccCCCc-hHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcccCc
Confidence 998887764 3 46899999999999997 444331 2233344444445555556899999999998642
Q ss_pred ------chhHHHHHHHHHHHHHHc
Q psy12350 1014 ------LLFNLFDLQVRLFQQLMQ 1031 (1129)
Q Consensus 1014 ------~~~~~~e~qa~~~a~~l~ 1031 (1129)
..-+.+..||+.+|++|.
T Consensus 306 ~~~~~pk~a~~A~~qg~~~A~Ni~ 329 (430)
T 3hyw_A 306 IPTGVPKTGMMIEQMAMAVAHNIV 329 (430)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred CcCccchHHHHHHHHHHHHHHHHH
Confidence 123689999999998875
No 187
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=99.06 E-value=1.2e-10 Score=118.63 Aligned_cols=156 Identities=17% Similarity=0.178 Sum_probs=96.6
Q ss_pred eEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccchhhhhcccc--EEEEecCCccccccCC-CCCeEEcC-CeeEEe
Q psy12350 871 QAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRAS--TVFLSHHSERVTSLCL-PNNVVLKP-DVAELT 946 (1129)
Q Consensus 871 ~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~V~~~~-~i~~v~ 946 (1129)
+|+|||+|.+|+++|..|++.+.+|+++++.+..+.....+..... .......+...+...+ ..+|++.. .+.+++
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~~v~~i~ 82 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPGVVKGVR 82 (180)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEECCCCEEE
T ss_pred eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeCEEEEEE
Confidence 6999999999999999999999999999987633211000000000 0000000000000000 11455544 466775
Q ss_pred C--Cc--EEecCCcEeeccEEEEccCccCcCCCCCCCCCeeecCCcccccccceeecCCCCcEEEccccccc--hhHHHH
Q psy12350 947 P--TG--VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTL--LFNLFD 1020 (1129)
Q Consensus 947 ~--~~--V~~~dG~~~~~D~VI~aTG~~~~~~fl~~~~g~~~~~~~~~~ly~~~~~~~~p~l~~iG~~~~~~--~~~~~e 1020 (1129)
. ++ |.+++| ++++|.||+|||..++. .+.+|++++ ++...+.. .+.++.|+||++|++.... ....+.
T Consensus 83 ~~~~~~~v~~~~g-~i~ad~vI~A~G~~~~~---~~~~g~~~~-~g~i~vd~-~~~t~~~~i~a~GD~~~~~~~~~~~A~ 156 (180)
T 2ywl_A 83 DMGGVFEVETEEG-VEKAERLLLCTHKDPTL---PSLLGLTRR-GAYIDTDE-GGRTSYPRVYAAGVARGKVPGHAIISA 156 (180)
T ss_dssp ECSSSEEEECSSC-EEEEEEEEECCTTCCHH---HHHHTCCEE-TTEECCCT-TCBCSSTTEEECGGGGTCCSCCHHHHH
T ss_pred EcCCEEEEEECCC-EEEECEEEECCCCCCCc---cccCCCCcc-CceEEeCC-CCCcCCCCEEEeecccCcchhhHHHHH
Confidence 4 22 677788 89999999999999853 222455665 44322322 2345899999999987653 567888
Q ss_pred HHHHHHHHHHcC
Q psy12350 1021 LQVRLFQQLMQG 1032 (1129)
Q Consensus 1021 ~qa~~~a~~l~g 1032 (1129)
.|++.+|..+.+
T Consensus 157 ~~g~~aa~~i~~ 168 (180)
T 2ywl_A 157 GDGAYVAVHLVS 168 (180)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhHHHHHHHHHH
Confidence 999999988754
No 188
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=98.96 E-value=6.3e-10 Score=128.16 Aligned_cols=151 Identities=15% Similarity=0.222 Sum_probs=83.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCC--CCCCCccCcccc--------cccccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD--QYGLPVHSSMYK--------SLKTNLP 78 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~--~~~~~~~~~~y~--------~l~~~~~ 78 (1129)
.+||+|||||+||++||..|++ .|.+|+|+||++.+|+.|..+....|. ..++. ....+. .+....+
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~--~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~-~~~~~~~~~~~~~~~l~~~~~ 80 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVT-PAHYLSQNPHFVKSALARYTN 80 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCC-GGGEECSCTTSTHHHHHHSCH
T ss_pred CCCEEEECCcHHHHHHHHHHHh--CCCCEEEEeCCCCCchhcEEcCCCeEEccCCccC-HHHhccCCHHHHHHHHHhCCH
Confidence 4799999999999999999999 568999999998886544321100010 00000 000010 0000000
Q ss_pred cccccc---CCCCCCC-CCCCCCC--CHHHHHHHHHHHHHhcCCcceeEeceeeeeecccccc-CCCCceEEeccccCcc
Q psy12350 79 KEIMEL---SGYHHKG-HPDKSYI--AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLIN-IEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 79 ~~~~~~---~d~~~~~-~~~~~~~--~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~~~~~~~~~~~~~~~ 151 (1129)
....++ .+.++.. .....|+ ...++.+++.+.+++.++ .++++++|+.+...... .+.| .+.+ .+
T Consensus 81 ~~~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv--~i~~~~~v~~i~~~~~g~~~~~--~v~~--~~-- 152 (401)
T 2gqf_A 81 WDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGA--KILLRSEVSQVERIQNDEKVRF--VLQV--NS-- 152 (401)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTC--EEECSCCEEEEEECCSCSSCCE--EEEE--TT--
T ss_pred HHHHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCC--EEEeCCEEEEEEcccCcCCCeE--EEEE--CC--
Confidence 000000 0111100 0011222 677888999998988887 89999999988752100 1223 3322 11
Q ss_pred ceEEecceeeeEEEEecccCCCCC
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVTLPS 175 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~~p~ 175 (1129)
....+| +||+|||..+.|.
T Consensus 153 g~i~ad-----~VVlAtG~~s~p~ 171 (401)
T 2gqf_A 153 TQWQCK-----NLIVATGGLSMPG 171 (401)
T ss_dssp EEEEES-----EEEECCCCSSCGG
T ss_pred CEEECC-----EEEECCCCccCCC
Confidence 146677 9999999766543
No 189
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=98.81 E-value=1.5e-10 Score=130.14 Aligned_cols=44 Identities=18% Similarity=0.312 Sum_probs=39.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..||+|||||||||+||.+|++...|++|+||||++.+||.+.+
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~ 108 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL 108 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence 46999999999999999999764468999999999999998874
No 190
>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}
Probab=98.79 E-value=5.1e-11 Score=133.95 Aligned_cols=148 Identities=12% Similarity=0.044 Sum_probs=94.6
Q ss_pred ccCccccccCCchhhHHHHHHhh--CCCcceEEEcccCCcCcccccCCCCCCCCCCCCccccccCccccccccccccccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNLPKDLMELCG 816 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~~GG~w~~~~~~g~~~~g~p~~~~~y~~~~~~~~~~~~~~~~ 816 (1129)
..+++|||+||+||+||.+|.+. | ++|+||||++.+||...+. ++. + .....+. .....+.++ .
T Consensus 65 ~~DV~IIGaGPAGlsAA~~la~~r~G--~~V~viEk~~~~GG~~~~~---~~~----~-~~~~l~~---~~~~~~~e~-G 130 (326)
T 3fpz_A 65 VSDVIIVGAGSSGLSAAYVIAKNRPD--LKVCIIESSVAPGGGSWLG---GQL----F-SAMVMRK---PAHLFLQEL-E 130 (326)
T ss_dssp EESEEEECCSHHHHHHHHHHHHHCTT--SCEEEECSSSSCCTTTTCC---STT----C-CCEEEET---TTHHHHHHT-T
T ss_pred CCCEEEECCCHHHHHHHHHHHHhCCC--CeEEEEECCCCCCceEEeC---Ccc----C-CHHHHHH---HHHHHHHHc-C
Confidence 35899999999999999999754 7 9999999999999977642 221 0 0001110 000000011 1
Q ss_pred CCCCCCCCCCCCChhhhhhccCCCCCCCCCCCCCCCCcEEeeccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEE
Q psy12350 817 YGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAV 896 (1129)
Q Consensus 817 ~~~~~~~~~~~~~~~~v~~~~~~P~~P~i~G~~~f~g~~~hs~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~ 896 (1129)
..+..+....+.....+...+..++.+.++|.+.+.+.-......++...+.+++++|||+|.+++|.|..+...+.+++
T Consensus 131 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~viggg~~av~~a~~~~~~~~~v~ 210 (326)
T 3fpz_A 131 IPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCAMDPNV 210 (326)
T ss_dssp CCCEECSSEEEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEEESSCSSSSCEEEEEEEEEHHHHTCTTSSSCCCCEE
T ss_pred CEEEECCcceecceeEEEEcchhhhccccccceeecccccceeeccCCcccCCCEEEEEccCceeeehhhhhhhccCcEE
Confidence 11111101111112223335556677788888777766555555555666789999999999999999999888888888
Q ss_pred EEec
Q psy12350 897 VVGS 900 (1129)
Q Consensus 897 vv~~ 900 (1129)
+..+
T Consensus 211 i~~~ 214 (326)
T 3fpz_A 211 IELA 214 (326)
T ss_dssp EEES
T ss_pred EEee
Confidence 8755
No 191
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=98.71 E-value=2.9e-08 Score=114.59 Aligned_cols=150 Identities=11% Similarity=0.123 Sum_probs=83.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCC--CCCCcc-------CcccccccccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQ--YGLPVH-------SSMYKSLKTNLP 78 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~--~~~~~~-------~~~y~~l~~~~~ 78 (1129)
..+||+|||||+||++||..|++ .|.+|+|+||++.+|+.+..+....|.- ..+... ...+..+....+
T Consensus 26 ~~~dViIIGgG~AGl~aA~~La~--~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~ 103 (417)
T 3v76_A 26 EKQDVVIIGAGAAGMMCAIEAGK--RGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRP 103 (417)
T ss_dssp --CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCH
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCH
Confidence 45799999999999999999999 5699999999998876442211100000 000000 000000000000
Q ss_pred cccccc---CCCCCCCC-CCCCC--CCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccc
Q psy12350 79 KEIMEL---SGYHHKGH-PDKSY--IAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVG 152 (1129)
Q Consensus 79 ~~~~~~---~d~~~~~~-~~~~~--~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~ 152 (1129)
.....+ .+.++... ....| ....++.+.+.+.+++.++ .++++++|+.+.... +.| .+.+ .. .
T Consensus 104 ~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv--~i~~~~~V~~i~~~~---~~~--~V~~-~~--g- 172 (417)
T 3v76_A 104 QDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGV--QLRLETSIGEVERTA---SGF--RVTT-SA--G- 172 (417)
T ss_dssp HHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTC--EEECSCCEEEEEEET---TEE--EEEE-TT--E-
T ss_pred HHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCC--EEEECCEEEEEEEeC---CEE--EEEE-CC--c-
Confidence 000000 00111000 01111 2566888999998888877 899999999987532 223 3322 11 1
Q ss_pred eEEecceeeeEEEEecccCCCCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVTLPS 175 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~~p~ 175 (1129)
...+| +||+|||.++.|.
T Consensus 173 ~i~ad-----~VIlAtG~~S~p~ 190 (417)
T 3v76_A 173 TVDAA-----SLVVASGGKSIPK 190 (417)
T ss_dssp EEEES-----EEEECCCCSSCGG
T ss_pred EEEee-----EEEECCCCccCCC
Confidence 56678 9999999776554
No 192
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=98.60 E-value=2.4e-07 Score=93.91 Aligned_cols=113 Identities=15% Similarity=0.126 Sum_probs=76.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYHH 89 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~~ 89 (1129)
++|+|||||++|+.+|..|++ .+.+|+|+|+.+.+ +. . ...+..++.+|
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~--~g~~v~lie~~~~~---~~-------------------~------~~~~~~~~~~~- 50 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLAR--AGLKVLVLDGGRSK---VK-------------------G------VSRVPNYPGLL- 50 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCT---TT-------------------T------CSCCCCSTTCT-
T ss_pred CeEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCc---cc-------------------C------chhhhccCCCc-
Confidence 689999999999999999999 66899999997621 10 0 00111122221
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecc
Q psy12350 90 KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQG 169 (1129)
Q Consensus 90 ~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG 169 (1129)
......++.+++.+.+++.++ .++++ +|++++... +.+ .+.. .+ . ...+| .||+|+|
T Consensus 51 ------~~~~~~~~~~~l~~~~~~~gv--~v~~~-~v~~i~~~~---~~~--~v~~-~~--g-~i~ad-----~vI~A~G 107 (180)
T 2ywl_A 51 ------DEPSGEELLRRLEAHARRYGA--EVRPG-VVKGVRDMG---GVF--EVET-EE--G-VEKAE-----RLLLCTH 107 (180)
T ss_dssp ------TCCCHHHHHHHHHHHHHHTTC--EEEEC-CCCEEEECS---SSE--EEEC-SS--C-EEEEE-----EEEECCT
T ss_pred ------CCCCHHHHHHHHHHHHHHcCC--EEEeC-EEEEEEEcC---CEE--EEEE-CC--C-EEEEC-----EEEECCC
Confidence 123567899999999998887 78888 998887521 222 2322 12 1 56788 9999999
Q ss_pred cCCCCCccc
Q psy12350 170 HVTLPSKAE 178 (1129)
Q Consensus 170 ~~~~p~~p~ 178 (1129)
..|+++.
T Consensus 108 --~~~~~~~ 114 (180)
T 2ywl_A 108 --KDPTLPS 114 (180)
T ss_dssp --TCCHHHH
T ss_pred --CCCCccc
Confidence 5555433
No 193
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=98.59 E-value=1.4e-07 Score=111.93 Aligned_cols=142 Identities=16% Similarity=0.067 Sum_probs=84.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGY 87 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~ 87 (1129)
..++|+|||||++||++|..|++ .|.+|+|+||++.+|+.......+ .....+. .+.-. .....|
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liEk~~~~g~~~~~~~~~-----------~~~~~l~-~~g~~-~~~~~~ 155 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELAL--LGARVVLVEKRIKFSRHNVLHLWP-----------FTIHDLR-ALGAK-KFYGRF 155 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCSSCCCCCEEECCH-----------HHHHHHH-TTTHH-HHCTTT
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCeEEEEEeccccCCCCcccCCh-----------hHHHHHH-HcCCc-cccccc
Confidence 35799999999999999999999 669999999998877542210000 0000000 00000 000111
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEe
Q psy12350 88 HHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLM 167 (1129)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvA 167 (1129)
... .-...+..++.++|.+.+++.++ .++++++|+++.......+.+.+.+.+..+++.....+| +||+|
T Consensus 156 ~~~---~~~~~~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad-----~VV~A 225 (497)
T 2bry_A 156 CTG---TLDHISIRQLQLLLLKVALLLGV--EIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFD-----VLISA 225 (497)
T ss_dssp TCT---TCCEEEHHHHHHHHHHHHHHTTC--EEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBS-----EEEEC
T ss_pred ccc---ccccCCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcC-----EEEEC
Confidence 100 01123567888999998888776 899999999987521112345554432101211345677 99999
Q ss_pred cccCCCC
Q psy12350 168 QGHVTLP 174 (1129)
Q Consensus 168 tG~~~~p 174 (1129)
+|..+.+
T Consensus 226 ~G~~S~~ 232 (497)
T 2bry_A 226 AGGKFVP 232 (497)
T ss_dssp CCTTCCC
T ss_pred CCCCccc
Confidence 9955433
No 194
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=98.55 E-value=8.5e-08 Score=110.91 Aligned_cols=149 Identities=16% Similarity=0.180 Sum_probs=83.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCC---CCCCCCcc----CcccccccccCCccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGR---DQYGLPVH----SSMYKSLKTNLPKEI 81 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~---~~~~~~~~----~~~y~~l~~~~~~~~ 81 (1129)
.+||+|||||++|+++|..|++ .|++|+|+||++.+|+.......... ...|+... ...+.......+...
T Consensus 4 ~~dVvIvG~G~aGl~~A~~La~--~G~~V~l~E~~~~~g~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 81 (397)
T 3cgv_A 4 TYDVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEK 81 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCS
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCcccccccCHHHHHHcCCCCChHHhhhhcceEEEEcCCCC
Confidence 4799999999999999999999 66999999998877653321110000 00111000 011111111111100
Q ss_pred --cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCc-eEEeccccCccceEEecc
Q psy12350 82 --MELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPS-MCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 82 --~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 158 (1129)
..+.. +....+.....++..+.++|.+.+.+.|. .++++++|+.+.... +.+. +.+. ..+.......|
T Consensus 82 ~~~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~~---~~v~gv~~~--~~~~~~~~~a~- 152 (397)
T 3cgv_A 82 RPIILQS-EKAGNEVGYVLERDKFDKHLAALAAKAGA--DVWVKSPALGVIKEN---GKVAGAKIR--HNNEIVDVRAK- 152 (397)
T ss_dssp SCEEEC------CCCEEEECHHHHHHHHHHHHHHHTC--EEESSCCEEEEEEET---TEEEEEEEE--ETTEEEEEEEE-
T ss_pred EEEEEec-cccCCceeEEEeHHHHHHHHHHHHHhCCC--EEEECCEEEEEEEeC---CEEEEEEEE--ECCeEEEEEcC-
Confidence 11100 00000111234778899999998888776 899999999887531 2222 3332 22333455677
Q ss_pred eeeeEEEEecccCC
Q psy12350 159 QVRFFLQLMQGHVT 172 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~ 172 (1129)
.||.|+|..+
T Consensus 153 ----~vV~A~G~~s 162 (397)
T 3cgv_A 153 ----MVIAADGFES 162 (397)
T ss_dssp ----EEEECCCTTC
T ss_pred ----EEEECCCcch
Confidence 9999999544
No 195
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=98.50 E-value=2.1e-07 Score=107.39 Aligned_cols=148 Identities=15% Similarity=0.136 Sum_probs=80.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc------eEecCCCCCCCCCCCCcc----CcccccccccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG------TWVYTEQTGRDQYGLPVH----SSMYKSLKTNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG------~w~~~~~~~~~~~~~~~~----~~~y~~l~~~~ 77 (1129)
+++||+||||||||++||..|++ .|++|+||||++.+|. ..... ..+..+++.. .......+...
T Consensus 3 e~yDViIVGaGpaGl~~A~~La~--~G~~V~v~Er~~~~~~~~~~g~~l~~~---~l~~l~~~~~~~~~~~~~~~~~~~~ 77 (397)
T 3oz2_A 3 ETYDVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRPEIGSPVRCGEGLSKG---ILNEADIKADRSFIANEVKGARIYG 77 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSTTCSCCSCCEEETH---HHHHTTCCCCTTTEEEEESEEEEEC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCCCceecccCHH---HHHHcCCCchhhhhhcccceEEEEe
Confidence 35899999999999999999999 6799999999877653 11100 0000111100 00111111111
Q ss_pred Cccc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEE
Q psy12350 78 PKEI--MELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYL 155 (1129)
Q Consensus 78 ~~~~--~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1129)
+... ..+.. +...........+..+.+.|.+.+.+.|. .++++++|+.+... ++....+.....++.....
T Consensus 78 ~~~~~~~~~~~-~~~~~~~~~~i~R~~~~~~L~~~a~~~G~--~~~~~~~v~~~~~~----~~~~~~v~~~~~~~~~~~~ 150 (397)
T 3oz2_A 78 PSEKRPIILQS-EKAGNEVGYVLERDKFDKHLAALAAKAGA--DVWVKSPALGVIKE----NGKVAGAKIRHNNEIVDVR 150 (397)
T ss_dssp TTCSSCEEEEC-SSSSCCCEEEECHHHHHHHHHHHHHHHTC--EEESSCCEEEEEEE----TTEEEEEEEEETTEEEEEE
T ss_pred CCCceEeeccc-cccCCceeEEEEHHHHHHHHHHHHHhcCc--EEeeeeeeeeeeec----cceeeeeeecccccceEEE
Confidence 1110 00000 00000011124788889999988888876 78999999877642 1111112222223333455
Q ss_pred ecceeeeEEEEecccCC
Q psy12350 156 FDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 156 ~d~~~~~~lvvAtG~~~ 172 (1129)
.| .||.|.|..+
T Consensus 151 a~-----~vIgAdG~~S 162 (397)
T 3oz2_A 151 AK-----MVIAADGFES 162 (397)
T ss_dssp EE-----EEEECCCTTC
T ss_pred Ee-----EEEeCCcccc
Confidence 66 8999999443
No 196
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=98.49 E-value=2.1e-07 Score=111.03 Aligned_cols=37 Identities=22% Similarity=0.379 Sum_probs=32.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC-CcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD-NVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~-~~G 47 (1129)
.+||+|||||+||++||..|++ .|.+|+|+|++. .+|
T Consensus 28 ~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG 65 (651)
T 3ces_A 28 PFDVIIIGGGHAGTEAAMAAAR--MGQQTLLLTHNIDTLG 65 (651)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTT
T ss_pred cCCEEEECChHHHHHHHHHHHh--CCCCEEEEeecccccc
Confidence 4799999999999999999999 669999999974 454
No 197
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.48 E-value=4.8e-07 Score=95.78 Aligned_cols=124 Identities=9% Similarity=-0.022 Sum_probs=75.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCCCCccCcccccccccCCccccccCCCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSLKTNLPKEIMELSGYH 88 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~~~d~~ 88 (1129)
.++|+|||||++|++||..|++ .+.+|+|+|++....|.+.+ +..+. . ....+++ ++.|
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~--~g~~v~lie~~~~~~G~~~~-~~~~~----~-~~~~~~~-----------~~~d-- 61 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFL-PPKPP----F-PPGSLLE-----------RAYD-- 61 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSS-CCCSC----C-CTTCHHH-----------HHCC--
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCcCCcccC-ccccc----c-chhhHHh-----------hhcc--
Confidence 3799999999999999999999 66999999998443443321 11000 0 0000111 1100
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCCce-EEeccccCccceEEecceeeeEEEE
Q psy12350 89 HKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHPSM-CIIGIPRDTVGFYLFDLQVRFFLQL 166 (1129)
Q Consensus 89 ~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~lvv 166 (1129)
..-+...++.+++.+.+++. ++ .++ +++|+++... ...+ .+.. .+ .....+| +||+
T Consensus 62 ------~~g~~~~~~~~~l~~~~~~~~gv--~i~-~~~v~~i~~~-----~~~v~~v~~-~~--g~~i~a~-----~VV~ 119 (232)
T 2cul_A 62 ------PKDERVWAFHARAKYLLEGLRPL--HLF-QATATGLLLE-----GNRVVGVRT-WE--GPPARGE-----KVVL 119 (232)
T ss_dssp ------TTCCCHHHHHHHHHHHHHTCTTE--EEE-ECCEEEEEEE-----TTEEEEEEE-TT--SCCEECS-----EEEE
T ss_pred ------CCCCCHHHHHHHHHHHHHcCCCc--EEE-EeEEEEEEEe-----CCEEEEEEE-CC--CCEEECC-----EEEE
Confidence 00115678888998888886 66 555 6788888652 1122 1221 22 2346678 9999
Q ss_pred ecccCCCCC
Q psy12350 167 MQGHVTLPS 175 (1129)
Q Consensus 167 AtG~~~~p~ 175 (1129)
|||.++...
T Consensus 120 A~G~~s~~~ 128 (232)
T 2cul_A 120 AVGSFLGAR 128 (232)
T ss_dssp CCTTCSSCE
T ss_pred CCCCChhhc
Confidence 999665443
No 198
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=98.47 E-value=3.5e-07 Score=109.23 Aligned_cols=152 Identities=14% Similarity=0.097 Sum_probs=81.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC----CcCceEecCCCCC-CCCCCC---------CccCcccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD----NVGGTWVYTEQTG-RDQYGL---------PVHSSMYKSL 73 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~----~~GG~w~~~~~~~-~~~~~~---------~~~~~~y~~l 73 (1129)
..++|+|||||++|+++|..|++ .|++|+|+||.+ .+|+.+....... ....|+ +......-..
T Consensus 6 ~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~ 83 (512)
T 3e1t_A 6 EVFDLIVIGGGPGGSTLASFVAM--RGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRW 83 (512)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEEC
T ss_pred ccCCEEEECcCHHHHHHHHHHHh--CCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEe
Confidence 34799999999999999999999 679999999986 2332221100000 000111 0000000000
Q ss_pred cccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCC-ceEEeccccCccc
Q psy12350 74 KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHP-SMCIIGIPRDTVG 152 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~-~~~~~~~~~~~~~ 152 (1129)
..........+...+..........++..+.++|.+.+.+.|+ .++++++|+.+.... +.. .+.+.+ .+++..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~~~~V~~v~~~~---~~v~gv~~~~-~dG~~~ 157 (512)
T 3e1t_A 84 GKEPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGV--DVRERHEVIDVLFEG---ERAVGVRYRN-TEGVEL 157 (512)
T ss_dssp SSCSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEET---TEEEEEEEEC-SSSCEE
T ss_pred cCCccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEEC---CEEEEEEEEe-CCCCEE
Confidence 0000000011111110001111235788999999999988776 899999999987621 110 122221 122223
Q ss_pred eEEecceeeeEEEEecccCC
Q psy12350 153 FYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 153 ~~~~d~~~~~~lvvAtG~~~ 172 (1129)
...+| .||.|+|..+
T Consensus 158 ~i~ad-----~VI~AdG~~S 172 (512)
T 3e1t_A 158 MAHAR-----FIVDASGNRT 172 (512)
T ss_dssp EEEEE-----EEEECCCTTC
T ss_pred EEEcC-----EEEECCCcch
Confidence 56677 9999999544
No 199
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=98.46 E-value=4.4e-07 Score=105.79 Aligned_cols=147 Identities=18% Similarity=0.096 Sum_probs=82.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc----CceEecCCCCCC----CCCCCCc-----cCcccccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV----GGTWVYTEQTGR----DQYGLPV-----HSSMYKSLKT 75 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~----GG~w~~~~~~~~----~~~~~~~-----~~~~y~~l~~ 75 (1129)
.+||+|||||++|+++|..|++ .|++|+|+||++.. |.... +.+ ...|+.. ..........
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~--~G~~V~v~E~~~~~~~~~g~~~~----~~~~~~l~~~g~~~~~~~~~~~~~~~~~~ 78 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQKFPRFVIGESLL----PRCMEHLDEAGFLDAVKAQGFQQKFGAKF 78 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSSCCCSCCBCC----GGGHHHHHHTTCHHHHHHTTCEEECEEEE
T ss_pred cCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcccCccc----HhHHHHHHHcCChHHHHHcCCcccCCcEE
Confidence 4799999999999999999999 66999999997632 22111 000 0001000 0000000000
Q ss_pred cCCccc--cccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 76 NLPKEI--MELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 76 ~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
...... ..+.+.............+..+.+.|.+.+.+.|. .++++++|+.+.... +++.+.+.+ .+++...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv--~i~~~~~v~~i~~~~---~~~~v~v~~-~~g~~~~ 152 (421)
T 3nix_A 79 VRGKEIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGV--DVEYEVGVTDIKFFG---TDSVTTIED-INGNKRE 152 (421)
T ss_dssp EETTEEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTC--EEECSEEEEEEEEET---TEEEEEEEE-TTSCEEE
T ss_pred EeCCeeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeC---CEEEEEEEc-CCCCEEE
Confidence 000111 11111000001111235788899999999988876 899999999987532 334444443 2232224
Q ss_pred EEecceeeeEEEEecccCC
Q psy12350 154 YLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~~~ 172 (1129)
..+| .||.|+|..+
T Consensus 153 ~~a~-----~vV~A~G~~s 166 (421)
T 3nix_A 153 IEAR-----FIIDASGYGR 166 (421)
T ss_dssp EEEE-----EEEECCGGGC
T ss_pred EEcC-----EEEECCCCch
Confidence 6677 9999999543
No 200
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=98.46 E-value=1.4e-07 Score=106.63 Aligned_cols=43 Identities=16% Similarity=0.355 Sum_probs=37.5
Q ss_pred ceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+||+|||||++|+++|..|++ .+.|++|+||||++.+||.|..
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~ 45 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTT 45 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCE
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceee
Confidence 589999999999999999998 2345899999999999997764
No 201
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=98.46 E-value=1.8e-07 Score=99.12 Aligned_cols=163 Identities=13% Similarity=0.124 Sum_probs=92.4
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCCCccc--hhhhh-----ccccEEE-----EecCCccccccCC-C-CC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDI--TLDIA-----TRASTVF-----LSHHSERVTSLCL-P-NN 935 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~~~~~--~~~~~-----~~~~~~~-----~~~~~~~~~~~~~-~-~~ 935 (1129)
.+|+|||+|.+|+++|..|++.|.+|+++++......+ .+... ....+.. ....+...+...+ . .+
T Consensus 4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~~~g 83 (232)
T 2cul_A 4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP 83 (232)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHcCCC
Confidence 36999999999999999999999999999886211000 00000 0000000 0000001111111 1 25
Q ss_pred eEEcCC-eeEEeC--C---cEEecCCcEeeccEEEEccCccCcCCC-------------------CCC---CCCeeecCC
Q psy12350 936 VVLKPD-VAELTP--T---GVRFQDGSYEQVDIILCCTGYSNHYPF-------------------LHE---SCGIKVVNK 987 (1129)
Q Consensus 936 V~~~~~-i~~v~~--~---~V~~~dG~~~~~D~VI~aTG~~~~~~f-------------------l~~---~~g~~~~~~ 987 (1129)
+++... ++++.. + +|.+.+|+++++|.||+|||...+... |.+ +.|+++...
T Consensus 84 v~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~~~g~~~~~~ 163 (232)
T 2cul_A 84 LHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVER 163 (232)
T ss_dssp EEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHHHTTCCEEEE
T ss_pred cEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHHhCCCeEEcc
Confidence 665533 776643 2 367789988999999999999544210 000 112211100
Q ss_pred c--------c------------cc-cccceeecCCCCcEEEccccccchhHHHHHHHHHHHHHHcC
Q psy12350 988 N--------V------------QP-LYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQG 1032 (1129)
Q Consensus 988 ~--------~------------~~-ly~~~~~~~~p~l~~iG~~~~~~~~~~~e~qa~~~a~~l~g 1032 (1129)
. . .+ ....+..+++|+||++|++.....+..+-.|++.+|..+..
T Consensus 164 ~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a~~g~~~~~~~~g~~~a~~i~~ 229 (232)
T 2cul_A 164 EGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCVREGDYARMSEEGKRLAEHLLH 229 (232)
T ss_dssp EEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGTSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecccCccHHHHHHHHHHHHHHHHh
Confidence 0 0 00 00011225899999999998335778889999999998753
No 202
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.41 E-value=5.5e-07 Score=106.79 Aligned_cols=36 Identities=36% Similarity=0.336 Sum_probs=33.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+||+||||||+||+||..|++ .|++|+||||++.+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~--~G~kV~VlEr~~~~ 142 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQ--MGFNPIIVERGKEV 142 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCCH
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCeEEEEEccCcc
Confidence 3799999999999999999999 67999999998776
No 203
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=98.39 E-value=1.9e-07 Score=109.56 Aligned_cols=149 Identities=16% Similarity=0.254 Sum_probs=81.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCCCCCC-CCc----------cCcccccccccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYG-LPV----------HSSMYKSLKTNL 77 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~~~~~-~~~----------~~~~y~~l~~~~ 77 (1129)
.+||+|||||+||++||..|++ .|.+|+|+||.+.+|+....+....|.-.. .+. ....+..+....
T Consensus 26 ~~dVvIIGgG~aGl~aA~~la~--~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (447)
T 2i0z_A 26 HYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFN 103 (447)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred CCCEEEECCcHHHHHHHHHHHH--CCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcC
Confidence 4799999999999999999999 568999999998887543221100000000 000 000000000000
Q ss_pred Ccccccc---CCCCCCCCC-CCCCC---CHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCC-CceEEeccccC
Q psy12350 78 PKEIMEL---SGYHHKGHP-DKSYI---AANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEH-PSMCIIGIPRD 149 (1129)
Q Consensus 78 ~~~~~~~---~d~~~~~~~-~~~~~---~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~-~~~~~~~~~~~ 149 (1129)
+....++ .+.++.... ...|+ ....+.+.|.+.+++.++ .|+++++|+++.... +. +.+.. .++
T Consensus 104 ~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV--~i~~~~~V~~i~~~~---~~v~~V~~---~~G 175 (447)
T 2i0z_A 104 NEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGV--KIRTNTPVETIEYEN---GQTKAVIL---QTG 175 (447)
T ss_dssp HHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTC--EEECSCCEEEEEEET---TEEEEEEE---TTC
T ss_pred HHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCC--EEEeCcEEEEEEecC---CcEEEEEE---CCC
Confidence 0000000 011110000 01122 467888888888888776 899999999987521 11 22222 222
Q ss_pred ccceEEecceeeeEEEEecccCCCC
Q psy12350 150 TVGFYLFDLQVRFFLQLMQGHVTLP 174 (1129)
Q Consensus 150 ~~~~~~~d~~~~~~lvvAtG~~~~p 174 (1129)
.....| .||+|||.++.|
T Consensus 176 --~~i~Ad-----~VVlAtGg~s~~ 193 (447)
T 2i0z_A 176 --EVLETN-----HVVIAVGGKSVP 193 (447)
T ss_dssp --CEEECS-----CEEECCCCSSSG
T ss_pred --CEEECC-----EEEECCCCCcCC
Confidence 235567 999999977654
No 204
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=98.38 E-value=1.5e-06 Score=95.07 Aligned_cols=40 Identities=25% Similarity=0.473 Sum_probs=35.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.+||+|||||++|++||..|++. +|.+|+|+||++.+||.
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~~-~G~~V~viEk~~~~gg~ 78 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGGG 78 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCTT
T ss_pred ccCEEEECccHHHHHHHHHHHHc-CCCeEEEEECCCCCCCc
Confidence 46999999999999999999993 16999999999888763
No 205
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=98.34 E-value=1.3e-06 Score=105.01 Aligned_cols=145 Identities=16% Similarity=0.137 Sum_probs=81.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCC-CCC----CCCCCC---------CccCccccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE-QTG----RDQYGL---------PVHSSMYKSLK 74 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~-~~~----~~~~~~---------~~~~~~y~~l~ 74 (1129)
.++|+|||||++||++|..|++ .|++|+||||.+.++..-.-.. ... .+..|+ +.....+..
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~--~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~-- 124 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRA--GGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAG-- 124 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHH--TTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTT--
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCC--
Confidence 3699999999999999999999 6799999999876531100000 000 000111 000000110
Q ss_pred ccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceE
Q psy12350 75 TNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFY 154 (1129)
Q Consensus 75 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (1129)
.......+.+.+.+ .+.........+.+.|.+.+.+.++ .|+++++|+.++... +++.+++.+ .+.....
T Consensus 125 --~~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~l~~~~---~~v~v~~~~--~~G~~~~ 194 (570)
T 3fmw_A 125 --IFTQGLDFGLVDTR-HPYTGLVPQSRTEALLAEHAREAGA--EIPRGHEVTRLRQDA---EAVEVTVAG--PSGPYPV 194 (570)
T ss_dssp --BCTTCCBGGGSCCS-CCSBBCCCHHHHHHHHHHHHHHHTE--ECCBSCEEEECCBCS---SCEEEEEEE--TTEEEEE
T ss_pred --cccccccccccCCC-CCeeEEeCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEcC---CeEEEEEEe--CCCcEEE
Confidence 00001111111100 1112345788899999998888776 789999999987632 334444322 1111456
Q ss_pred EecceeeeEEEEecccCC
Q psy12350 155 LFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~ 172 (1129)
.+| +||.|.|..+
T Consensus 195 ~a~-----~vV~ADG~~S 207 (570)
T 3fmw_A 195 RAR-----YGVGCDGGRS 207 (570)
T ss_dssp EES-----EEEECSCSSC
T ss_pred EeC-----EEEEcCCCCc
Confidence 677 9999999544
No 206
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=98.34 E-value=7.5e-07 Score=103.32 Aligned_cols=145 Identities=15% Similarity=0.139 Sum_probs=79.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCce-EEEEcccCCcCc---eEecCCCCC--CCCCCC---------CccCcccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFT-CTTFEQTDNVGG---TWVYTEQTG--RDQYGL---------PVHSSMYKSL 73 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~-v~v~E~~~~~GG---~w~~~~~~~--~~~~~~---------~~~~~~y~~l 73 (1129)
.++|+|||||++||++|..|++ .|++ |+||||.+.++. .....+..- ....|+ +.....+..
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~- 80 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYID- 80 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEC-
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCCCcccceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEc-
Confidence 4799999999999999999999 6699 999999876542 111100000 000011 000000000
Q ss_pred cccCCcccccc-----CCCCCCCCCCCCCCCHHHHHHHHHHHHHh-cCCcceeEeceeeeeeccccccCCCCceEEeccc
Q psy12350 74 KTNLPKEIMEL-----SGYHHKGHPDKSYIAANDVLEYLNDFADN-FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP 147 (1129)
Q Consensus 74 ~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~ 147 (1129)
.....+... ..+.++ ...+++..+.++|.+.+.+ .+. ..++++++|+.+.. . +++.+.+.+..
T Consensus 81 --~~g~~~~~~~~~~~~~~~~~----~~~i~r~~l~~~L~~~~~~~~g~-~~v~~~~~v~~i~~-~---~~v~v~~~~~~ 149 (410)
T 3c96_A 81 --QSGATVWSEPRGVEAGNAYP----QYSIHRGELQMILLAAVRERLGQ-QAVRTGLGVERIEE-R---DGRVLIGARDG 149 (410)
T ss_dssp --TTSCEEEEEECGGGGTCSSC----EEEEEHHHHHHHHHHHHHHHHCT-TSEEESEEEEEEEE-E---TTEEEEEEEET
T ss_pred --CCCCEEeeccCCccccCCCC----eeeeeHHHHHHHHHHHHHhhCCC-cEEEECCEEEEEec-C---CccEEEEecCC
Confidence 000000000 011110 1234677888888887765 341 26899999999875 2 34444443211
Q ss_pred cCccceEEecceeeeEEEEecccCC
Q psy12350 148 RDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 148 ~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
+++.....+| .||.|+|..+
T Consensus 150 ~g~~~~~~ad-----~vV~AdG~~S 169 (410)
T 3c96_A 150 HGKPQALGAD-----VLVGADGIHS 169 (410)
T ss_dssp TSCEEEEEES-----EEEECCCTTC
T ss_pred CCCceEEecC-----EEEECCCccc
Confidence 2322456678 9999999554
No 207
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=98.34 E-value=2.7e-06 Score=100.09 Aligned_cols=36 Identities=33% Similarity=0.479 Sum_probs=31.8
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
||+|||||+||++||..|++ .|.+|+|+||. ..||.
T Consensus 1 DVvVIG~G~AGl~aA~~la~--~G~~V~viek~-~~~g~ 36 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRR--AGKKVTLISKR-IDGGS 36 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHH--TTCCEEEECSS-TTCSS
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeCC-CCCch
Confidence 69999999999999999999 56999999998 55554
No 208
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=98.31 E-value=1.7e-06 Score=104.00 Aligned_cols=153 Identities=11% Similarity=0.021 Sum_probs=82.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCC-CCC-C---CCCC---------CCccCc-ccc--
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE-QTG-R---DQYG---------LPVHSS-MYK-- 71 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~-~~~-~---~~~~---------~~~~~~-~y~-- 71 (1129)
..+|+|||||++||++|..|++ .|.+|+||||.+.++..-.-.. ... . ...| .+.... .+.
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~--~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 82 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLAR--QGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIR 82 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEE
T ss_pred cCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeee
Confidence 4799999999999999999999 6699999999876531100000 000 0 0001 110000 000
Q ss_pred cccccCCcccc----ccC----CCCCCCCCC-CCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceE
Q psy12350 72 SLKTNLPKEIM----ELS----GYHHKGHPD-KSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMC 142 (1129)
Q Consensus 72 ~l~~~~~~~~~----~~~----d~~~~~~~~-~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~ 142 (1129)
.........+. .+. ++... .+. ....+...+.++|.+.+.+.|. .++++++|+.+..... ...+.++
T Consensus 83 ~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~~~-~~~~~v~ 158 (535)
T 3ihg_A 83 LAESVRGEILRTVSESFDDMVAATEPC-TPAGWAMLSQDKLEPILLAQARKHGG--AIRFGTRLLSFRQHDD-DAGAGVT 158 (535)
T ss_dssp EESSSSSCEEEEEESCHHHHHHTTGGG-CSCCCBCCCHHHHHHHHHHHHHHTTC--EEESSCEEEEEEEECG-GGCSEEE
T ss_pred EEeccCCceeeeccccccccccccccC-CCCcccccCHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEECCC-CccccEE
Confidence 00000000110 000 00000 011 2345788999999999988876 8999999999876321 0011233
Q ss_pred EeccccCccceEEecceeeeEEEEecccCC
Q psy12350 143 IIGIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 143 ~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
+...+.+......+| +||.|+|..+
T Consensus 159 v~~~~~~~~~~i~a~-----~vV~AdG~~S 183 (535)
T 3ihg_A 159 ARLAGPDGEYDLRAG-----YLVGADGNRS 183 (535)
T ss_dssp EEEEETTEEEEEEEE-----EEEECCCTTC
T ss_pred EEEEcCCCeEEEEeC-----EEEECCCCcc
Confidence 322222223445677 9999999554
No 209
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=98.31 E-value=1.5e-06 Score=99.11 Aligned_cols=37 Identities=27% Similarity=0.480 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||++|+++|..|++ .|++|+|+||++.+|
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~--~G~~V~vlE~~~~~~ 40 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIG 40 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCC
Confidence 4799999999999999999999 679999999986555
No 210
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=98.31 E-value=1.6e-06 Score=97.55 Aligned_cols=41 Identities=32% Similarity=0.598 Sum_probs=37.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
++|+|||||++|+++|..|++ .|.+|+||||++.+||.+..
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~--~G~~V~vlE~~~~~gg~~~~ 43 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTA--AGHQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGCE
T ss_pred ceEEEECCcHHHHHHHHHHHH--CCCcEEEEECCCCCccccee
Confidence 689999999999999999999 66899999999999987653
No 211
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=98.29 E-value=9.9e-07 Score=101.17 Aligned_cols=134 Identities=16% Similarity=0.139 Sum_probs=77.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCCCCCCCCCccCccc-cc-ccccC-Cccccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTGRDQYGLPVHSSMY-KS-LKTNL-PKEIME 83 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~~~~~~~~~~~~~y-~~-l~~~~-~~~~~~ 83 (1129)
++|+|||||++||++|..|++.++|++|+||||++.+ |+.....++.-....+ ...+ +. +.... +...+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 76 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPAN----PLSYLDAPERLNPQFLEDFK 76 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTC----GGGGSSCGGGGCCEEECCEE
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcC----cchhhhhhHHHhhccccceE
Confidence 4899999999999999999995337999999998776 5444332221100000 0000 00 00000 000000
Q ss_pred c--CCCCCCC--CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 84 L--SGYHHKG--HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 84 ~--~d~~~~~--~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
+ .+..+.. .......++.++.+.|.+.+.+.|+ .++++++|++++.. . ...+|
T Consensus 77 ~~~~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~~---------------~----~~~ad-- 133 (381)
T 3c4a_A 77 LVHHNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGI--AIRFESPLLEHGEL---------------P----LADYD-- 133 (381)
T ss_dssp EEESSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTC--EEETTCCCCSGGGC---------------C----GGGCS--
T ss_pred EEeCCeeEEecCCCceeeecHHHHHHHHHHHHHHCCC--EEEeCCEeccchhc---------------c----cccCC--
Confidence 0 0000000 0000124778999999999988776 89999999877531 0 12367
Q ss_pred eeeEEEEecccCCC
Q psy12350 160 VRFFLQLMQGHVTL 173 (1129)
Q Consensus 160 ~~~~lvvAtG~~~~ 173 (1129)
.||.|+|..+.
T Consensus 134 ---~vV~AdG~~S~ 144 (381)
T 3c4a_A 134 ---LVVLANGVNHK 144 (381)
T ss_dssp ---EEEECCGGGGG
T ss_pred ---EEEECCCCCch
Confidence 99999997664
No 212
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=98.28 E-value=1.5e-06 Score=104.63 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEecCCCCCC----CCCCCC---------ccCcccccc
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGR----DQYGLP---------VHSSMYKSL 73 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~~~~~~~----~~~~~~---------~~~~~y~~l 73 (1129)
+..++|+|||||+||+++|..|++ .|++|+|+||.+..++.....-.+.. ...|+. .........
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar--~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~ 98 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHK--LGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLW 98 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEEC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHc--CCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEe
Confidence 345899999999999999999999 56999999997543211000000000 000110 000000000
Q ss_pred cccCCccccccCCCCCC--CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 74 KTNLPKEIMELSGYHHK--GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
..........+...... ..+.........+.++|.+.+.+.|+ .++++++|+.+... ....+.+.+.+ .+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~V~~v~~~--~g~~~~V~~~~--~G~~ 172 (591)
T 3i3l_A 99 GQDQAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGI--TVHEETPVTDVDLS--DPDRVVLTVRR--GGES 172 (591)
T ss_dssp SSSCCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEECC--STTCEEEEEEE--TTEE
T ss_pred cCCCccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCC--EEEeCCEEEEEEEc--CCCEEEEEEec--CCce
Confidence 00000000111110000 00111235788899999999988776 88999999998753 11233343332 2222
Q ss_pred ceEEecceeeeEEEEecccCC
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.....| .||.|+|..+
T Consensus 173 ~~i~Ad-----lVV~AdG~~S 188 (591)
T 3i3l_A 173 VTVESD-----FVIDAGGSGG 188 (591)
T ss_dssp EEEEES-----EEEECCGGGC
T ss_pred EEEEcC-----EEEECCCCcc
Confidence 456677 9999999543
No 213
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=98.28 E-value=1.8e-06 Score=99.00 Aligned_cols=137 Identities=15% Similarity=0.122 Sum_probs=79.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce---EecCCCCC--CCCCCC---------CccCcccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT---WVYTEQTG--RDQYGL---------PVHSSMYKSL 73 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~---w~~~~~~~--~~~~~~---------~~~~~~y~~l 73 (1129)
..++|+|||||++|+++|..|++ .|++|+||||.+.+++. ....+..- ....|+ +.....+..
T Consensus 10 ~~~dVvIVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~- 86 (379)
T 3alj_A 10 KTRRAEVAGGGFAGLTAAIALKQ--NGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWM- 86 (379)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEE-
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEe-
Confidence 35799999999999999999999 66999999998776431 11000000 000000 000000000
Q ss_pred cccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccce
Q psy12350 74 KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGF 153 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~ 153 (1129)
. ...+..+ +.+.. .....++..+.++|.+.+.+.|+ .++++++|+.++. ++ .++. .++ ..
T Consensus 87 --~-g~~~~~~---~~~~~-~~~~~~r~~l~~~L~~~~~~~gv--~i~~~~~v~~i~~-----~~-~v~~---~~g--~~ 146 (379)
T 3alj_A 87 --H-NKSVSKE---TFNGL-PWRIMTRSHLHDALVNRARALGV--DISVNSEAVAADP-----VG-RLTL---QTG--EV 146 (379)
T ss_dssp --T-TEEEEEE---CGGGC-CEEEEEHHHHHHHHHHHHHHTTC--EEESSCCEEEEET-----TT-EEEE---TTS--CE
T ss_pred --C-Cceeeec---cCCCC-ceEEECHHHHHHHHHHHHHhcCC--EEEeCCEEEEEEe-----CC-EEEE---CCC--CE
Confidence 0 0001011 10000 11234678899999998888766 8999999998874 22 3332 122 34
Q ss_pred EEecceeeeEEEEecccCC
Q psy12350 154 YLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 154 ~~~d~~~~~~lvvAtG~~~ 172 (1129)
..+| .||.|+|..+
T Consensus 147 ~~ad-----~vV~AdG~~s 160 (379)
T 3alj_A 147 LEAD-----LIVGADGVGS 160 (379)
T ss_dssp EECS-----EEEECCCTTC
T ss_pred EEcC-----EEEECCCccH
Confidence 6788 9999999543
No 214
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=98.28 E-value=2.3e-06 Score=98.92 Aligned_cols=147 Identities=10% Similarity=0.071 Sum_probs=79.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc---CceEecCCCCC--CCCCCCCc----cCcccccccccC--
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV---GGTWVYTEQTG--RDQYGLPV----HSSMYKSLKTNL-- 77 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~---GG~w~~~~~~~--~~~~~~~~----~~~~y~~l~~~~-- 77 (1129)
.++|+|||||++|+++|..|++ .|++|+||||++.+ |......+..- ....|+.. ....+..+....
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~--~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGR--QGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD 83 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence 4799999999999999999999 66999999998654 11111000000 00001000 000000000000
Q ss_pred CccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhc-CCcceeEeceeeeeeccccccCCCC--ceEEeccccCccceE
Q psy12350 78 PKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNF-NLRNLCLVNKNVQPLYKHLINIEHP--SMCIIGIPRDTVGFY 154 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~-~~~~~i~~~~~V~~v~~~~~~~~~~--~~~~~~~~~~~~~~~ 154 (1129)
......+..-...........++..+.+.|.+.+.+. ++ .++++++|+.++... +++ .++. .++ ...
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv--~i~~~~~v~~i~~~~---~~v~g~v~~---~~g--~~~ 153 (399)
T 2x3n_A 84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATV--EMLFETRIEAVQRDE---RHAIDQVRL---NDG--RVL 153 (399)
T ss_dssp TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTE--EEECSCCEEEEEECT---TSCEEEEEE---TTS--CEE
T ss_pred CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCc--EEEcCCEEEEEEEcC---CceEEEEEE---CCC--CEE
Confidence 0001111000000000112357788999999888876 66 789999999987632 233 3332 222 256
Q ss_pred EecceeeeEEEEecccCC
Q psy12350 155 LFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 155 ~~d~~~~~~lvvAtG~~~ 172 (1129)
.+| .||.|+|..+
T Consensus 154 ~ad-----~vV~AdG~~s 166 (399)
T 2x3n_A 154 RPR-----VVVGADGIAS 166 (399)
T ss_dssp EEE-----EEEECCCTTC
T ss_pred ECC-----EEEECCCCCh
Confidence 678 9999999544
No 215
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=98.27 E-value=2.6e-06 Score=98.26 Aligned_cols=142 Identities=20% Similarity=0.313 Sum_probs=79.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC-----cCceEecCCCCCC---CCCCC---------CccCccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN-----VGGTWVYTEQTGR---DQYGL---------PVHSSMY 70 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~-----~GG~w~~~~~~~~---~~~~~---------~~~~~~y 70 (1129)
..++|+|||||++||++|..|++ .|++|+||||++. .|+.|...+..+. ...|+ +.....+
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 102 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIA 102 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHT--TTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEE
Confidence 45799999999999999999999 6699999999864 3555553221110 00111 0000000
Q ss_pred ccccccCCccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCc
Q psy12350 71 KSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDT 150 (1129)
Q Consensus 71 ~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~ 150 (1129)
. ........+ .+|...........+..+.++|.+.+.. ..|+++++|+.++... ++|.++. .++
T Consensus 103 ~----~~g~~~~~~-~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~---~~v~v~~---~~g- 166 (398)
T 2xdo_A 103 D----EKGNILSTK-NVKPENRFDNPEINRNDLRAILLNSLEN----DTVIWDRKLVMLEPGK---KKWTLTF---ENK- 166 (398)
T ss_dssp C----SSSEEEEEC-CCGGGTTSSCCEECHHHHHHHHHHTSCT----TSEEESCCEEEEEECS---SSEEEEE---TTS-
T ss_pred C----CCCCchhhc-cccccCCCCCceECHHHHHHHHHhhcCC----CEEEECCEEEEEEECC---CEEEEEE---CCC-
Confidence 0 000000010 0010000011234677888888765543 3789999999997632 3343333 122
Q ss_pred cceEEecceeeeEEEEecccCCC
Q psy12350 151 VGFYLFDLQVRFFLQLMQGHVTL 173 (1129)
Q Consensus 151 ~~~~~~d~~~~~~lvvAtG~~~~ 173 (1129)
....+| .||.|+|..+.
T Consensus 167 -~~~~ad-----~vV~AdG~~S~ 183 (398)
T 2xdo_A 167 -PSETAD-----LVILANGGMSK 183 (398)
T ss_dssp -CCEEES-----EEEECSCTTCS
T ss_pred -cEEecC-----EEEECCCcchh
Confidence 346788 99999996553
No 216
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=98.27 E-value=1.1e-06 Score=104.52 Aligned_cols=38 Identities=26% Similarity=0.473 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC-CcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD-NVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~-~~GG 48 (1129)
.+||+|||||+||++||..|++ .|.+|+|+|++. .+|+
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr--~G~kVlLIEk~~~~iG~ 65 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAAR--MGAKTAMFVLNADTIGQ 65 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEecccccCC
Confidence 4799999999999999999999 669999999974 4553
No 217
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=98.26 E-value=3.3e-06 Score=102.12 Aligned_cols=154 Identities=10% Similarity=0.135 Sum_probs=83.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcC----CCCceEEEEcccCCcCceEecCC--CC-C-------CCCCCCCccCcccc-cc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEP----GSGFTCTTFEQTDNVGGTWVYTE--QT-G-------RDQYGLPVHSSMYK-SL 73 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~----~~~~~v~v~E~~~~~GG~w~~~~--~~-~-------~~~~~~~~~~~~y~-~l 73 (1129)
.+||+|||||||||+||..|++. ++|++|+|+||.+.+|+...... .+ . ....|.+....... .+
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~ 114 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRF 114 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhe
Confidence 36999999999999999999994 22799999999988775321100 00 0 00001111110000 00
Q ss_pred cccCCccccccCCCCC--CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccc----
Q psy12350 74 KTNLPKEIMELSGYHH--KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIP---- 147 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~--~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~---- 147 (1129)
..........++.+|. .........+..++.++|.+.+++.|+ .|+++++|+++.... ++....+...+
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv--~i~~g~~v~~l~~~~---~g~V~gV~~~~~g~~ 189 (584)
T 2gmh_A 115 GILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGV--EVYPGYAAAEILFHE---DGSVKGIATNDVGIQ 189 (584)
T ss_dssp EEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTC--EEETTCCEEEEEECT---TSSEEEEEECCEEEC
T ss_pred eeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCC--EEEcCCEEEEEEEcC---CCCEEEEEeCCcccc
Confidence 0000001111211110 000112234778999999999988876 899999999886521 12211132211
Q ss_pred -cCc-------cceEEecceeeeEEEEecccCC
Q psy12350 148 -RDT-------VGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 148 -~~~-------~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
+++ ......| +||+|+|.++
T Consensus 190 ~~G~~~~~~~~g~~i~Ad-----~VV~AdG~~S 217 (584)
T 2gmh_A 190 KDGAPKTTFERGLELHAK-----VTIFAEGCHG 217 (584)
T ss_dssp TTSCEEEEEECCCEEECS-----EEEECCCTTC
T ss_pred CCCCcccccCCceEEECC-----EEEEeeCCCc
Confidence 111 1345667 9999999544
No 218
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=98.25 E-value=3.4e-06 Score=102.13 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=36.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..||+|||||+|||+||..|++ .|.+|+|+||.+.+||...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~--~G~~V~vlEk~~~~gg~s~ 166 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGNAK 166 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTGG
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCchh
Confidence 4799999999999999999999 5689999999998887544
No 219
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=98.25 E-value=2.4e-06 Score=101.36 Aligned_cols=150 Identities=13% Similarity=0.097 Sum_probs=82.3
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce---EecCCCC--CCCCCCCC--ccC-cccccccccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT---WVYTEQT--GRDQYGLP--VHS-SMYKSLKTNL 77 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~---w~~~~~~--~~~~~~~~--~~~-~~y~~l~~~~ 77 (1129)
+.+.++|+||||||+||++|..|++ .|++|+||||.+.++.. ....+.. -.+..|+. ... ..++....
T Consensus 8 ~~~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~-- 83 (500)
T 2qa1_A 8 HRSDAAVIVVGAGPAGMMLAGELRL--AGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHF-- 83 (500)
T ss_dssp CCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEE--
T ss_pred ccCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccc--
Confidence 4456899999999999999999999 67999999998765321 0000000 00011110 000 00000000
Q ss_pred CccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 78 PKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
......+.+++.+ .+.....+...+.+.|.+.+.+.+. .|+++++|++++... +++.+++.+ .+......+|
T Consensus 84 ~~~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~---~~v~v~~~~--~~g~~~~~a~ 155 (500)
T 2qa1_A 84 GGLPIDFGVLEGA-WQAAKTVPQSVTETHLEQWATGLGA--DIRRGHEVLSLTDDG---AGVTVEVRG--PEGKHTLRAA 155 (500)
T ss_dssp TTEEEEGGGSTTG-GGCEEEEEHHHHHHHHHHHHHHTTC--EEEETCEEEEEEEET---TEEEEEEEE--TTEEEEEEES
T ss_pred cceecccccCCCC-CCceeecCHHHHHHHHHHHHHHCCC--EEECCcEEEEEEEcC---CeEEEEEEc--CCCCEEEEeC
Confidence 0000111111000 0011234677889999999988876 899999999987532 233333322 1112245677
Q ss_pred ceeeeEEEEecccCC
Q psy12350 158 LQVRFFLQLMQGHVT 172 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~ 172 (1129)
+||.|.|..|
T Consensus 156 -----~vVgADG~~S 165 (500)
T 2qa1_A 156 -----YLVGCDGGRS 165 (500)
T ss_dssp -----EEEECCCTTC
T ss_pred -----EEEECCCcch
Confidence 9999999654
No 220
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=98.25 E-value=4.2e-07 Score=99.37 Aligned_cols=40 Identities=33% Similarity=0.629 Sum_probs=37.6
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+|+|||||||||+||..|++ .|++|+||||++.+||.+.
T Consensus 3 ~dV~IIGaGpaGL~aA~~La~--~G~~V~v~Ek~~~~GG~~~ 42 (336)
T 3kkj_A 3 VPIAIIGTGIAGLSAAQALTA--AGHQVHLFDKSRGSGGRMS 42 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCccc
Confidence 689999999999999999999 6799999999999999876
No 221
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=98.25 E-value=3.2e-06 Score=102.17 Aligned_cols=39 Identities=23% Similarity=0.438 Sum_probs=35.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||+|||+||..|++ .|.+|+||||.+.+||.
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~--~G~~V~vlEk~~~~gg~ 159 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGGN 159 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCTT
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCc
Confidence 4699999999999999999999 56899999999887764
No 222
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=98.24 E-value=5.9e-06 Score=99.36 Aligned_cols=146 Identities=13% Similarity=0.127 Sum_probs=80.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec---CCC-------CCC----CCCCCCccC---cccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY---TEQ-------TGR----DQYGLPVHS---SMYK 71 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~---~~~-------~~~----~~~~~~~~~---~~y~ 71 (1129)
..+|+||||||+||++|..|++ .|.+|+||||.+.++....- .+. -|. ...+.+... ..|.
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~--~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~ 103 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAH--RQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWV 103 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEe
Confidence 4699999999999999999999 66999999998766422110 000 000 001111110 0110
Q ss_pred cccccCCccccccCCCCCC-------CCC-CCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEE
Q psy12350 72 SLKTNLPKEIMELSGYHHK-------GHP-DKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCI 143 (1129)
Q Consensus 72 ~l~~~~~~~~~~~~d~~~~-------~~~-~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~ 143 (1129)
. ......+..+ +++.. ..+ .....+...+.++|.+.+.+. |+++++|++++... +++.+++
T Consensus 104 ~--~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~-----v~~~~~v~~~~~~~---~~v~v~~ 172 (549)
T 2r0c_A 104 T--RVGGHEVYRI-PLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER-----LRTRSRLDSFEQRD---DHVRATI 172 (549)
T ss_dssp S--SBTSCEEEEE-CCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG-----EECSEEEEEEEECS---SCEEEEE
T ss_pred c--cCCCceeEee-cccccccccccCCCCCcccccCHHHHHHHHHHHHHHh-----cccCcEEEEEEEeC---CEEEEEE
Confidence 0 0000011111 11100 000 112346778888888888764 89999999987532 3444444
Q ss_pred eccccCccceEEecceeeeEEEEecccCC
Q psy12350 144 IGIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 144 ~~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.+..+++.....+| +||.|+|..+
T Consensus 173 ~~~~~G~~~~i~a~-----~vVgADG~~S 196 (549)
T 2r0c_A 173 TDLRTGATRAVHAR-----YLVACDGASS 196 (549)
T ss_dssp EETTTCCEEEEEEE-----EEEECCCTTC
T ss_pred EECCCCCEEEEEeC-----EEEECCCCCc
Confidence 33222323456677 9999999654
No 223
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=98.24 E-value=7.8e-07 Score=103.10 Aligned_cols=144 Identities=16% Similarity=0.202 Sum_probs=78.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC---ceEecCCCCC--CCCCCC---------CccCcccccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG---GTWVYTEQTG--RDQYGL---------PVHSSMYKSL 73 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G---G~w~~~~~~~--~~~~~~---------~~~~~~y~~l 73 (1129)
++++|+|||||++||++|..|++ .|++|+||||.+.++ ..+...+..- ....|+ +.....+..
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~--~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~- 98 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQ--SGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRD- 98 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEE-
Confidence 45899999999999999999999 669999999987652 1111110000 000011 100000000
Q ss_pred cccCCccccccCCCCCC--CCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCcc
Q psy12350 74 KTNLPKEIMELSGYHHK--GHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTV 151 (1129)
Q Consensus 74 ~~~~~~~~~~~~d~~~~--~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~ 151 (1129)
.........++.-++. ........++..+.+.|.+.+.+ ..|+++++|+.++... ++ +.+.. .+ .
T Consensus 99 -~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~----~~i~~~~~v~~i~~~~---~~--v~v~~-~~--g 165 (407)
T 3rp8_A 99 -FRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR----DSVQFGKRVTRCEEDA---DG--VTVWF-TD--G 165 (407)
T ss_dssp -TTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG----GGEEESCCEEEEEEET---TE--EEEEE-TT--S
T ss_pred -CCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc----CEEEECCEEEEEEecC---Cc--EEEEE-cC--C
Confidence 0000111111100000 00112234678888888888776 3789999999987632 22 33322 12 2
Q ss_pred ceEEecceeeeEEEEecccCC
Q psy12350 152 GFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 152 ~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
....+| .||.|+|..+
T Consensus 166 ~~~~a~-----~vV~AdG~~S 181 (407)
T 3rp8_A 166 SSASGD-----LLIAADGSHS 181 (407)
T ss_dssp CEEEES-----EEEECCCTTC
T ss_pred CEEeeC-----EEEECCCcCh
Confidence 356678 9999999554
No 224
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=98.22 E-value=3.1e-06 Score=97.65 Aligned_cols=140 Identities=19% Similarity=0.174 Sum_probs=75.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc----CceEecCCCCC--CCCCCCCccCccc--cccc--ccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV----GGTWVYTEQTG--RDQYGLPVHSSMY--KSLK--TNL 77 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~----GG~w~~~~~~~--~~~~~~~~~~~~y--~~l~--~~~ 77 (1129)
..++|+|||||++||++|..|++ .|++|+||||++.. |+.+...++.- ....|+....... .... ...
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 81 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDAL 81 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETT
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecC
Confidence 35799999999999999999999 67999999998653 22222111000 0001110000000 0000 000
Q ss_pred CccccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEec
Q psy12350 78 PKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157 (1129)
Q Consensus 78 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d 157 (1129)
....... ++. ......+..+.++|.+.+. +. .++++++|+++.... +++.++. .+ .....+|
T Consensus 82 ~g~~~~~--~~~----~~~~~~~~~l~~~L~~~~~--~~--~i~~~~~v~~i~~~~---~~v~v~~---~~--g~~~~ad 143 (397)
T 2vou_A 82 TGERVGS--VPA----DWRFTSYDSIYGGLYELFG--PE--RYHTSKCLVGLSQDS---ETVQMRF---SD--GTKAEAN 143 (397)
T ss_dssp TCCEEEE--EEC----CCCEEEHHHHHHHHHHHHC--ST--TEETTCCEEEEEECS---SCEEEEE---TT--SCEEEES
T ss_pred CCCcccc--ccC----cccccCHHHHHHHHHHhCC--Cc--EEEcCCEEEEEEecC---CEEEEEE---CC--CCEEECC
Confidence 0000000 000 0113455677788776642 33 789999999987532 3333332 12 2356788
Q ss_pred ceeeeEEEEecccCC
Q psy12350 158 LQVRFFLQLMQGHVT 172 (1129)
Q Consensus 158 ~~~~~~lvvAtG~~~ 172 (1129)
.||.|+|..+
T Consensus 144 -----~vV~AdG~~S 153 (397)
T 2vou_A 144 -----WVIGADGGAS 153 (397)
T ss_dssp -----EEEECCCTTC
T ss_pred -----EEEECCCcch
Confidence 9999999554
No 225
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=98.21 E-value=3.4e-06 Score=100.02 Aligned_cols=148 Identities=17% Similarity=0.146 Sum_probs=82.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE---ecCCCC--CCCCCCCC--ccC-cccccccccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW---VYTEQT--GRDQYGLP--VHS-SMYKSLKTNLPK 79 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w---~~~~~~--~~~~~~~~--~~~-~~y~~l~~~~~~ 79 (1129)
..++|+||||||+||++|..|++ .|++|+||||.+.++..- ...+.. -.+..|+. ... ........ ..
T Consensus 11 ~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~--~~ 86 (499)
T 2qa2_A 11 SDASVIVVGAGPAGLMLAGELRL--GGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHF--GG 86 (499)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEE--TT
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhcccccccee--cc
Confidence 45899999999999999999999 679999999987653210 000000 00001110 000 00000000 00
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecce
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQ 159 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 159 (1129)
....+.+++.+ .+.....+...+.+.|.+.+.+.+. .|+++++|++++... +++.+++.+ .+......+|
T Consensus 87 ~~~~~~~~~~~-~~~~~~i~~~~l~~~L~~~~~~~gv--~v~~~~~v~~i~~~~---~~v~v~~~~--~~g~~~~~a~-- 156 (499)
T 2qa2_A 87 RPVDFGVLEGA-HYGVKAVPQSTTESVLEEWALGRGA--ELLRGHTVRALTDEG---DHVVVEVEG--PDGPRSLTTR-- 156 (499)
T ss_dssp EEEEGGGSTTC-CCEEEEEEHHHHHHHHHHHHHHTTC--EEEESCEEEEEEECS---SCEEEEEEC--SSCEEEEEEE--
T ss_pred eecccccCCCC-CCceEecCHHHHHHHHHHHHHhCCC--EEEcCCEEEEEEEeC---CEEEEEEEc--CCCcEEEEeC--
Confidence 00111111100 0111234678899999998888876 899999999987532 334443332 1112245667
Q ss_pred eeeEEEEecccCC
Q psy12350 160 VRFFLQLMQGHVT 172 (1129)
Q Consensus 160 ~~~~lvvAtG~~~ 172 (1129)
+||.|.|..|
T Consensus 157 ---~vVgADG~~S 166 (499)
T 2qa2_A 157 ---YVVGCDGGRS 166 (499)
T ss_dssp ---EEEECCCTTC
T ss_pred ---EEEEccCccc
Confidence 9999999654
No 226
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=98.19 E-value=1.8e-06 Score=95.07 Aligned_cols=41 Identities=27% Similarity=0.362 Sum_probs=35.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.+||+|||||++||+||..|++...|++|+|+|+...+||.
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg 119 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGG 119 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCc
Confidence 47999999999999999999995337999999999888753
No 227
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=98.18 E-value=1.6e-06 Score=102.00 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=78.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc--CceEecCCC--CCCCCCCCCcc--C---cccccccccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV--GGTWVYTEQ--TGRDQYGLPVH--S---SMYKSLKTNLPK 79 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~--GG~w~~~~~--~~~~~~~~~~~--~---~~y~~l~~~~~~ 79 (1129)
.++|+|||||+||+++|..|++ .|++|+|+||.+.+ |..+.-... ......|+... . ..+..+....+.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~--~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 83 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSR--RGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPD 83 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSS--SSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTT
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCC
Confidence 4799999999999999999999 67999999998753 222110000 00000011000 0 000000000000
Q ss_pred cccccCCCCCCCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCc-eEEeccccCccceEEecc
Q psy12350 80 EIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPS-MCIIGIPRDTVGFYLFDL 158 (1129)
Q Consensus 80 ~~~~~~d~~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~ 158 (1129)
.... ++++. .....++..+.+.|.+.+.+.|+ .++++++|+.+.... +... +.+.+..+++.....+|
T Consensus 84 ~~~~---~~~~~--~~~~i~r~~l~~~L~~~a~~~gv--~i~~~~~v~~i~~~~---~~v~gv~~~~~~~G~~~~~~ad- 152 (453)
T 3atr_A 84 MQTV---WTVNG--EGFELNAPLYNQRVLKEAQDRGV--EIWDLTTAMKPIFED---GYVKGAVLFNRRTNEELTVYSK- 152 (453)
T ss_dssp SSCE---EEEEE--EEEEECHHHHHHHHHHHHHHTTC--EEESSEEEEEEEEET---TEEEEEEEEETTTTEEEEEECS-
T ss_pred CceE---EeECC--CcEEEcHHHHHHHHHHHHHHcCC--EEEeCcEEEEEEEEC---CEEEEEEEEEcCCCceEEEEcC-
Confidence 0000 00000 01124677888999888888776 899999999887521 1111 22221102222345677
Q ss_pred eeeeEEEEecccCC
Q psy12350 159 QVRFFLQLMQGHVT 172 (1129)
Q Consensus 159 ~~~~~lvvAtG~~~ 172 (1129)
.||.|+|..+
T Consensus 153 ----~VV~AdG~~s 162 (453)
T 3atr_A 153 ----VVVEATGYSR 162 (453)
T ss_dssp ----EEEECCGGGC
T ss_pred ----EEEECcCCch
Confidence 9999999554
No 228
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=98.18 E-value=6.2e-06 Score=94.54 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=33.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
..+||+|||||++|+++|..|++ .|++|+|+|+....+
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~--~G~~V~llE~~~~~~ 53 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGTMGG 53 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCc
Confidence 35799999999999999999999 669999999976443
No 229
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=98.16 E-value=4e-06 Score=91.90 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=35.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC-ceE
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG-GTW 50 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G-G~w 50 (1129)
.||+|||||++|++||..|++.+++++|+|||+++.+| |+|
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~ 107 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW 107 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence 48999999999999999999954479999999999887 444
No 230
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=98.09 E-value=6.6e-06 Score=101.76 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=33.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||++|+++|..|++ .|.+|+|+||++.+|
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g 308 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLR--RGWQVTLYCADEAPA 308 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCccc
Confidence 3799999999999999999999 569999999977665
No 231
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=98.09 E-value=9.4e-06 Score=97.58 Aligned_cols=41 Identities=29% Similarity=0.340 Sum_probs=35.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..+||+|||||++|+++|..|++ .|++|+|+||++..+|+.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~--~G~~V~LlEk~d~~~GtS 57 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQV--RGIQTGLVEMNDFASGTS 57 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSTTCSGG
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCcc
Confidence 35899999999999999999999 669999999986555543
No 232
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=98.08 E-value=3.3e-06 Score=97.31 Aligned_cols=149 Identities=11% Similarity=0.115 Sum_probs=78.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc------CceEecCCCCC--CCCCCCCc----cCcccccccccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV------GGTWVYTEQTG--RDQYGLPV----HSSMYKSLKTNL 77 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~------GG~w~~~~~~~--~~~~~~~~----~~~~y~~l~~~~ 77 (1129)
++|+|||||++|+++|..|++ .|++|+|+||.+.. ++.... +..- ....|+.. ....+.......
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~~~~~~~~~g~l~-~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~ 79 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQTPDYVLGRIRAGVLE-QGMVDLLREAGVDRRMARDGLVHEGVEIAF 79 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCHHHHHTCCCCCEEC-HHHHHHHHHTTCCHHHHHHCEEESCEEEEE
T ss_pred ccEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCcccCCCceEeEC-HHHHHHHHHcCCcHHHHhcCCccceEEEEE
Confidence 689999999999999999999 66999999997642 111110 0000 00011100 000000000000
Q ss_pred CccccccCCCCC-CCCCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEe
Q psy12350 78 PKEIMELSGYHH-KGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLF 156 (1129)
Q Consensus 78 ~~~~~~~~d~~~-~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1129)
......+ +++. ............++.+.|.+.+.+.++ .++++++|+++.... .+.+.+++. .+++.....+
T Consensus 80 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~--~i~~~~~v~~i~~~~--~~~~~v~~~--~~g~~~~~~a 152 (394)
T 1k0i_A 80 AGQRRRI-DLKRLSGGKTVTVYGQTEVTRDLMEAREACGA--TTVYQAAEVRLHDLQ--GERPYVTFE--RDGERLRLDC 152 (394)
T ss_dssp TTEEEEE-CHHHHHTSCCEEECCHHHHHHHHHHHHHHTTC--EEESSCEEEEEECTT--SSSCEEEEE--ETTEEEEEEC
T ss_pred CCceEEe-ccccccCCCceEEechHHHHHHHHHHHHhcCC--eEEeceeEEEEEEec--CCceEEEEe--cCCcEEEEEe
Confidence 0000000 0000 000011123566778888777777665 899999999987521 123444432 1222224667
Q ss_pred cceeeeEEEEecccCCC
Q psy12350 157 DLQVRFFLQLMQGHVTL 173 (1129)
Q Consensus 157 d~~~~~~lvvAtG~~~~ 173 (1129)
| .||.|+|..+.
T Consensus 153 ~-----~vV~AdG~~S~ 164 (394)
T 1k0i_A 153 D-----YIAGCDGFHGI 164 (394)
T ss_dssp S-----EEEECCCTTCS
T ss_pred C-----EEEECCCCCcH
Confidence 7 99999996553
No 233
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=98.07 E-value=1.5e-05 Score=96.19 Aligned_cols=41 Identities=27% Similarity=0.412 Sum_probs=36.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++|+|||||+|||+||..|++ .|++|+||||.+.+||...
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~--~g~~v~~~e~~~~~~~~~~ 166 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGNTK 166 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHS--SSCCEEEECSSSSSCTTGG
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcchh
Confidence 4699999999999999999999 5699999999988876543
No 234
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=98.06 E-value=6.9e-06 Score=97.87 Aligned_cols=40 Identities=25% Similarity=0.366 Sum_probs=36.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
..||+|||||+|||+||..|++ .|.+|+|+||.+.+||.-
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~--~G~~V~vlEk~~~~GG~s 80 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAAR--AGADVLVLERTSGWGGAT 80 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTG
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcc
Confidence 4799999999999999999999 568999999999887653
No 235
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=98.05 E-value=9.8e-06 Score=94.81 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=35.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~ 49 (1129)
...||+|||||++|++||.+|++ .|+ +|+|+||++..||.
T Consensus 5 ~~~dVvIIGgG~aGlsaA~~La~--~G~~~V~vlE~~~~~~~~ 45 (438)
T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLAR--RGYTNVTVLDPYPVPSAI 45 (438)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSCSSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEEeCCCCCCCC
Confidence 45799999999999999999999 568 99999998876643
No 236
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=98.05 E-value=1.3e-05 Score=91.77 Aligned_cols=36 Identities=36% Similarity=0.517 Sum_probs=32.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||++|+++|..|++ .|++|+|+||+. +|
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~--~G~~V~lle~~~-~~ 40 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAK--RGEEVTVIEKRF-IG 40 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS-TT
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCC-CC
Confidence 5799999999999999999999 568999999974 54
No 237
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=98.04 E-value=1.3e-05 Score=95.76 Aligned_cols=40 Identities=20% Similarity=0.351 Sum_probs=34.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC-CcCce
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD-NVGGT 49 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~-~~GG~ 49 (1129)
..+||+|||||+||++||..|++ .|.+|+|+|++. .+|+.
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~~~iG~~ 60 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVAR--GGLHCLLITSDLSAVARM 60 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCC
T ss_pred CcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEecccccCCC
Confidence 35899999999999999999999 669999999974 46654
No 238
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=98.03 E-value=1.1e-05 Score=92.00 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=32.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.||+|||||++|+++|..|++ .|++|+|+||++..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~--~G~~V~vle~~~~~ 37 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATR--AGLNVLMTDAHMPP 37 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHH--TTCCEEEECSSCSS
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCC
Confidence 699999999999999999999 56899999997655
No 239
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=98.01 E-value=2.3e-05 Score=96.98 Aligned_cols=37 Identities=22% Similarity=0.275 Sum_probs=33.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||.+|+++|..|++ .|++|+|+||++.+|
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g 300 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQR--RGAVVTLYCADAQPA 300 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSSTT
T ss_pred CCCEEEECCcHHHHHHHHHHHH--CCCcEEEEeCCCccc
Confidence 4799999999999999999999 569999999987665
No 240
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=98.00 E-value=7.2e-06 Score=93.92 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=33.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+++|+|||||.+|+++|.+|+ + |++|+|+||++.+|
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~--G~~V~vlE~~~~~g 44 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-A--HGRVVVLEREAQPG 44 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-T--TSCEEEECSSSSTT
T ss_pred CcCCEEEECCcHHHHHHHHHHh-C--CCCEEEEECCCCcc
Confidence 4589999999999999999999 4 58999999987775
No 241
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=97.97 E-value=4e-06 Score=100.44 Aligned_cols=42 Identities=31% Similarity=0.489 Sum_probs=37.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+.||+|||||+|||+||..|++. .|++|+|||+++.+||.+.
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~-~G~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQI-DGPSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH-CCSCEEEEESSSSCCGGGC
T ss_pred CCCEEEECCcHHHHHHHHHHHhh-CCCCEEEEECCCCCcCCee
Confidence 47999999999999999999873 2699999999999999765
No 242
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=97.97 E-value=3.9e-05 Score=93.89 Aligned_cols=156 Identities=12% Similarity=0.070 Sum_probs=82.6
Q ss_pred cceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCceEe---cCCCC--CCCCCCCC---------ccC-ccccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGGTWV---YTEQT--GRDQYGLP---------VHS-SMYKS 72 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG~w~---~~~~~--~~~~~~~~---------~~~-~~y~~ 72 (1129)
..+|+||||||+||++|..|++ .| .+|+|+||.+.++.... ..+.. -.+..|+. ... ..|..
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~~G--~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~ 109 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAFPD--IRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKP 109 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTCTT--SCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEE
T ss_pred CCcEEEECcCHHHHHHHHHHHHhCC--CCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECC
Confidence 4799999999999999999998 65 89999999876532110 00000 00001110 000 00100
Q ss_pred ccccCCcccc---ccCCCCCCC-CCCCCCCCHHHHHHHHHHHHHhcCCcceeEeceeeeeecccccc-CCCCceEEecc-
Q psy12350 73 LKTNLPKEIM---ELSGYHHKG-HPDKSYIAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLIN-IEHPSMCIIGI- 146 (1129)
Q Consensus 73 l~~~~~~~~~---~~~d~~~~~-~~~~~~~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~-~~~~~~~~~~~- 146 (1129)
- ......+. .+++..... .......+...+.++|.+.+.+.+....|+++++|+.+...... ...+.+++.+.
T Consensus 110 ~-~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~ 188 (639)
T 2dkh_A 110 D-PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCD 188 (639)
T ss_dssp C-TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECS
T ss_pred C-CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecc
Confidence 0 00001111 011000000 00112357788999999999888644478999999998753210 01233333321
Q ss_pred --ccCccceEEecceeeeEEEEecccCC
Q psy12350 147 --PRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 147 --~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
..+.......| +||.|+|..+
T Consensus 189 ~~~~G~~~~i~a~-----~vVgADG~~S 211 (639)
T 2dkh_A 189 AAHAGQIETVQAR-----YVVGCDGARS 211 (639)
T ss_dssp GGGTTCEEEEEEE-----EEEECCCTTC
T ss_pred ccCCCCeEEEEeC-----EEEECCCcch
Confidence 12323445677 9999999654
No 243
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=97.87 E-value=6.8e-06 Score=96.34 Aligned_cols=47 Identities=17% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 4 DKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 4 ~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..|...+||+|||||.+||+||..|++ .|++|+|+||++.+||.+..
T Consensus 6 ~~~~~~~dvvVIGaG~~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 6 ETIDTDYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp -CCCCBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGCE
T ss_pred hhccccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCccccc
Confidence 344556899999999999999999999 66999999999999998863
No 244
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=97.86 E-value=8.6e-06 Score=91.69 Aligned_cols=44 Identities=34% Similarity=0.545 Sum_probs=39.8
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc-CCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT-DNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~-~~~GG~w~~ 52 (1129)
...++|+|||||+|||+||..|++ .|++|+|||++ +.+||.|..
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~--~G~~V~VlE~~~~~vGGr~~t 86 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTR--AGHDVTILEANANRVGGRIKT 86 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHH--TSCEEEEECSCSSCCBTTCCE
T ss_pred CCCceEEEECCCHHHHHHHHHHHH--CCCcEEEEeccccccCCceee
Confidence 346899999999999999999999 56999999999 999998873
No 245
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=97.85 E-value=4.6e-05 Score=90.49 Aligned_cols=38 Identities=26% Similarity=0.366 Sum_probs=32.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG 48 (1129)
..||+|||||++|+++|..|++ .|++|+|+||++..+|
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~--~G~~V~llE~~~~~~g 40 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAG--RGLSVLMLEAQDLACA 40 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCS
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCCEEEEECCCCCCC
Confidence 4799999999999999999999 5699999999764333
No 246
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=97.84 E-value=6.2e-06 Score=98.42 Aligned_cols=40 Identities=38% Similarity=0.534 Sum_probs=31.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
|+|+|||||.+||+||.+|++ .|++|+|||+++.+||.+.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~--~G~~V~VlEa~~~~GG~~~ 41 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQA--AGIPVLLLEQRDKPGGRAY 41 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHH--TTCCEEEECCC-------C
T ss_pred CCEEEECCcHHHHHHHHHHHH--CCCcEEEEccCCCCCCcEE
Confidence 689999999999999999999 6799999999999999765
No 247
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=97.82 E-value=1.8e-05 Score=92.16 Aligned_cols=42 Identities=38% Similarity=0.612 Sum_probs=38.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~GG~w~ 51 (1129)
+++||+|||||+|||+||..|++ .| ++|+|||+++.+||.+.
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~--~g~~~v~v~E~~~~~GG~~~ 47 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQ--AGFHDYTILERTDHVGGKCH 47 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSSCSSTTCC
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEECCCCCCCccc
Confidence 45899999999999999999999 67 89999999999999877
No 248
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=97.81 E-value=7.7e-05 Score=86.09 Aligned_cols=38 Identities=24% Similarity=0.389 Sum_probs=32.4
Q ss_pred cceEEEEcCChHHHHHHHHhhc-CCCCceEEEEcccCCcCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-PGSGFTCTTFEQTDNVGG 48 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-~~~~~~v~v~E~~~~~GG 48 (1129)
.+||+|||||++|+++|..|++ .| .++|+|+||++ +|+
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~~G-~~~V~vlE~~~-~~~ 59 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKNHG-ITNVAVLEKGW-LAG 59 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHC-CCCEEEECSSS-TTC
T ss_pred cCCEEEECcCHHHHHHHHHHHHhcC-CCcEEEEeCCC-CCC
Confidence 5799999999999999999998 54 17999999987 443
No 249
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=97.79 E-value=8.9e-06 Score=93.57 Aligned_cols=45 Identities=22% Similarity=0.341 Sum_probs=39.8
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...+||+|||||+|||+||..|++. .|++|+|||+++.+||.+..
T Consensus 5 ~~~~~v~IiGaG~~Gl~aA~~L~~~-~g~~v~v~E~~~~~GG~~~~ 49 (399)
T 1v0j_A 5 TARFDLFVVGSGFFGLTIAERVATQ-LDKRVLVLERRPHIGGNAYS 49 (399)
T ss_dssp CCSCSEEEECCSHHHHHHHHHHHHH-SCCCEEEECSSSSSSGGGCE
T ss_pred cccCCEEEECCCHHHHHHHHHHHHh-CCCCEEEEeCCCCCCCeeee
Confidence 3458999999999999999999994 16899999999999999873
No 250
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=97.79 E-value=7.2e-05 Score=85.81 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=32.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.+||+|||||++|+++|..|++ .|++|+|+||.+..+
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~--~G~~V~vie~~~~~~ 39 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPPH 39 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCC
Confidence 3799999999999999999999 569999999976544
No 251
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=97.75 E-value=1.2e-05 Score=96.19 Aligned_cols=42 Identities=33% Similarity=0.608 Sum_probs=38.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||+|||+||..|++ .| ++|+|||+++.+||.+.
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~--~G~~~V~VlEa~~riGGr~~ 49 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQ--NGIQDCLVLEARDRVGGRLQ 49 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHH--TTCCSEEEECSSSSSBTTCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--cCCCCEEEEeCCCCCCCcee
Confidence 45799999999999999999999 67 89999999999999775
No 252
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=97.72 E-value=0.00019 Score=86.49 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||+|||+||..|++ .|.+|+|+||....
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~--~G~~V~vlEK~~~~ 42 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPT 42 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence 4799999999999999999999 56899999998655
No 253
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=97.69 E-value=2.2e-05 Score=89.22 Aligned_cols=42 Identities=21% Similarity=0.391 Sum_probs=38.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||++||+||..|++ .|.+|+|+|+++.+||.|.
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~~ 69 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLAS--SGQRVLIVDRRPHIGGNAY 69 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSGGGC
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCceEEEeccCCCCCccc
Confidence 35799999999999999999999 5689999999999999987
No 254
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=97.68 E-value=1.8e-05 Score=92.29 Aligned_cols=41 Identities=32% Similarity=0.485 Sum_probs=38.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
+||+|||||++||+||..|++ .|++|+|+|+++.+||.+..
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~t 42 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTN--AGKKVLLLEGGERLGGRAYS 42 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBTTCCE
T ss_pred CCEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCccCeecc
Confidence 699999999999999999999 56899999999999998863
No 255
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=97.67 E-value=1.8e-05 Score=94.67 Aligned_cols=41 Identities=37% Similarity=0.638 Sum_probs=38.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.+||+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~GGr~~ 44 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGGRTY 44 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBTTCC
T ss_pred CceEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcee
Confidence 4799999999999999999999 5689999999999999875
No 256
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=97.66 E-value=0.0001 Score=89.21 Aligned_cols=38 Identities=13% Similarity=0.294 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||+|||+||..|++.|++.+|+|+||....
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~ 42 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM 42 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred cCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence 46999999999999999999994433899999997644
No 257
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=97.66 E-value=0.00013 Score=88.04 Aligned_cols=36 Identities=28% Similarity=0.438 Sum_probs=32.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||+|||+||..|++ .|.+|+|+||....
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~--~G~~V~vlEK~~~~ 53 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSE--AGFNTACVTKLFPT 53 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGG
T ss_pred cCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCC
Confidence 4699999999999999999999 56899999997643
No 258
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=97.66 E-value=2.2e-05 Score=91.24 Aligned_cols=40 Identities=30% Similarity=0.570 Sum_probs=37.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
|||+|||||++||+||..|++ .|++|+||||++.+||.+.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~GG~~~ 40 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLAR--NGHEIIVLEKSAMIGGRFT 40 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCceeE
Confidence 589999999999999999999 5699999999999999876
No 259
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=97.64 E-value=8.8e-05 Score=90.89 Aligned_cols=36 Identities=22% Similarity=0.487 Sum_probs=31.9
Q ss_pred cceEEEEcCChHHHHHHHHhhc-----CCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTE-----PGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~-----~~~~~~v~v~E~~~~~ 46 (1129)
..+|+||||||+||++|..|++ .| ++|+||||++..
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~G--i~v~viE~~~~~ 48 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRSTK 48 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSSC
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCC--CCEEEEeCCCCC
Confidence 4799999999999999999998 65 899999997643
No 260
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=97.64 E-value=8.7e-05 Score=93.92 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=31.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~ 45 (1129)
..||+|||||++|+++|.+|++ .|. +|+|+||+..
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~--~G~~~V~vlE~~~~ 39 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVT--RGWNNITVLDQGPL 39 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSCT
T ss_pred CCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCC
Confidence 4799999999999999999999 567 8999999775
No 261
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=97.64 E-value=3.8e-05 Score=91.23 Aligned_cols=43 Identities=28% Similarity=0.509 Sum_probs=38.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
...++|+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~--~g~~v~v~E~~~~~GG~~~ 51 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQK--AGYKVTVLEARTRPGGRVW 51 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTCC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCCCcee
Confidence 456899999999999999999999 6689999999999999643
No 262
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=97.61 E-value=8.3e-05 Score=85.77 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=32.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.+||+|||||++|+++|..|++..+|++|+|+||+..
T Consensus 36 ~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~ 72 (405)
T 3c4n_A 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL 72 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred cCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 3799999999999999999999522799999999753
No 263
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=97.61 E-value=3.2e-05 Score=88.25 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=38.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++|+|||||++|+++|..|++ .|++|+|||+++.+||.|.
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~GG~~~ 43 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGGNSY 43 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSGGGC
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEEecCCcCCccc
Confidence 3799999999999999999999 5699999999999999986
No 264
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=97.59 E-value=3e-05 Score=92.58 Aligned_cols=38 Identities=24% Similarity=0.434 Sum_probs=32.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
..||+|||||+|||+||..|++ | .+|+|+||.+..||.
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G--~~V~vlEk~~~~~g~ 45 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVTEGS 45 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-T--SCEEEECSSCTTC--
T ss_pred CCCEEEECccHHHHHHHHHHhc-C--CcEEEEECCCCCCCC
Confidence 4799999999999999999998 5 899999998876653
No 265
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=97.59 E-value=3e-05 Score=90.27 Aligned_cols=40 Identities=35% Similarity=0.661 Sum_probs=37.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
|||+|||||.+||+||.+|++ .|++|+|||+++.+||.+.
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSK--AGHEVEVFERLPITGGRFT 40 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBTTSS
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCceEEEeCCCCCCCcee
Confidence 589999999999999999999 5699999999999999876
No 266
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=97.58 E-value=0.00013 Score=87.22 Aligned_cols=61 Identities=10% Similarity=0.132 Sum_probs=41.2
Q ss_pred CCHHHHHHHHHHHHHh-cCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCC
Q psy12350 98 IAANDVLEYLNDFADN-FNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 98 ~~~~~~~~yl~~~~~~-~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.+...+.++|.+.+.+ .|+ .++++ +|+.+.... +++.+.+.. .++ .....| +||.|+|..+
T Consensus 172 ~~r~~l~~~L~~~a~~~~Gv--~i~~~-~v~~i~~~~---~g~~~~v~~-~~g--~~i~ad-----~vV~AdG~~S 233 (526)
T 2pyx_A 172 LNAAKFSQLLTEHCTQKLGV--THIRD-HVSQIINNQ---HGDIEKLIT-KQN--GEISGQ-----LFIDCTGAKS 233 (526)
T ss_dssp ECHHHHHHHHHHHHHHTSCC--EEEEC-CEEEEEECT---TSCEEEEEE-SSS--CEEECS-----EEEECSGGGC
T ss_pred EcHHHHHHHHHHHHHhcCCC--EEEEe-EEEEEEecC---CCcEEEEEE-CCC--CEEEcC-----EEEECCCcch
Confidence 4778899999999988 777 78888 598886521 233333332 122 235677 9999999544
No 267
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=97.58 E-value=0.00036 Score=84.91 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=32.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||.|||+||..|++ .|.+|+|+||....
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae--~G~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHH--CCCcEEEEeccCCC
Confidence 4799999999999999999999 56899999997654
No 268
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=97.57 E-value=0.00014 Score=87.37 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=32.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCC-CCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPG-SGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~-~~~~v~v~E~~~ 44 (1129)
+.++|+|||||+||+++|..|++.. .|.+|+|+|+.+
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 61 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD 61 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence 3579999999999999999999943 458999999964
No 269
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=97.52 E-value=4.9e-05 Score=90.58 Aligned_cols=42 Identities=33% Similarity=0.590 Sum_probs=38.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+.++|+|||||++||+||..|++ .|++|+|||+++.+||.+.
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG~~~ 53 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGKLR 53 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSCSSCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCCcee
Confidence 45799999999999999999999 5699999999999999876
No 270
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=97.51 E-value=0.00016 Score=86.83 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=30.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC-CCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG-SGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~-~~~~v~v~E~~~ 44 (1129)
.++|+|||||++|+++|..|++.. .|++|+|+|+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence 479999999999999999999822 348999999954
No 271
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=97.50 E-value=4.1e-05 Score=89.94 Aligned_cols=41 Identities=29% Similarity=0.589 Sum_probs=38.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
.++|+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG~~~ 45 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRK--AGLSVAVIEARDRVGGRTW 45 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTCC
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCCCCCCcee
Confidence 4799999999999999999999 5689999999999999876
No 272
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=97.49 E-value=4.9e-05 Score=89.65 Aligned_cols=44 Identities=39% Similarity=0.415 Sum_probs=38.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||++||+||..|++.| +.+|+|||+++.+||.|..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~~g-~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESSSSSSGGGCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEeCCCCCCCeeee
Confidence 3579999999999999999999943 2799999999999999884
No 273
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=97.49 E-value=5.8e-05 Score=89.29 Aligned_cols=40 Identities=28% Similarity=0.461 Sum_probs=37.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCc--eEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGF--TCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~--~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||||.+||+||.+|++. |. +|+|||+++.+||.+.
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~--G~~~~V~vlEa~~~~GG~~~ 44 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRA--PCPPKVVLVESSERLGGWIR 44 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTS--SSCCEEEEECSSSSSBTTCC
T ss_pred ceEEEECCcHHHHHHHHHHHhC--CCCCcEEEEeCCCCCCCceE
Confidence 6999999999999999999994 57 9999999999999876
No 274
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=97.49 E-value=5.1e-05 Score=86.07 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=37.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||||++||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~GG~~~ 41 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGGNAY 41 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSGGGC
T ss_pred CCEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCcceE
Confidence 689999999999999999999 5689999999999999886
No 275
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=97.47 E-value=5.2e-05 Score=89.60 Aligned_cols=44 Identities=23% Similarity=0.374 Sum_probs=39.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
++||+|||||++||+||..|++.|++++|+|||+++.+||.+..
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~ 47 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVAT 47 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCE
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEE
Confidence 47999999999999999999995555999999999999998763
No 276
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=97.45 E-value=4.6e-05 Score=89.96 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=38.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC----CCceEEEEcccCCcCceEe
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~----~~~~v~v~E~~~~~GG~w~ 51 (1129)
+++|+|||||.+||+||..|++.| ++++|+|||+++.+||...
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~ 51 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ 51 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCC
T ss_pred CCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEE
Confidence 379999999999999999999944 3499999999999998766
No 277
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=97.44 E-value=6.6e-05 Score=89.24 Aligned_cols=40 Identities=45% Similarity=0.654 Sum_probs=37.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
+||+|||||+|||+||..|++ .|++|+|||+++.+||.+.
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GGr~~ 79 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTV--AGFKTLLLEARDRIGGRSW 79 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSBSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcce
Confidence 799999999999999999999 5699999999999999765
No 278
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=97.39 E-value=5.8e-05 Score=82.00 Aligned_cols=42 Identities=29% Similarity=0.437 Sum_probs=39.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.-||+||||||+||++|..|.+.| ++|+||||++.+||.+..
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~~G--~~V~v~Ek~~~~GG~~~~ 43 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCCCcccc
Confidence 458999999999999999999999 999999999999998763
No 279
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=97.39 E-value=8.1e-05 Score=88.03 Aligned_cols=42 Identities=26% Similarity=0.556 Sum_probs=37.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..+||+|||||++||+||..|++ .|++|+|||+++.+||.+.
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~--~g~~v~v~E~~~~~GGr~~ 56 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGGAVG 56 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSBTTCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCCceee
Confidence 35799999999999999999999 5699999999999999776
No 280
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=97.38 E-value=9.9e-05 Score=85.26 Aligned_cols=34 Identities=32% Similarity=0.728 Sum_probs=31.5
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+||+||||||+||++|..|++ .|++|+||||.+.
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~--~G~~v~v~Er~~~ 35 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRK--HGIKVTIYERNSA 35 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCS
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 699999999999999999999 6799999999764
No 281
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=97.31 E-value=0.00012 Score=85.04 Aligned_cols=44 Identities=14% Similarity=0.183 Sum_probs=39.9
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
...++|+|||||++|++||..|++ .|++|+|+|+++.+||.|..
T Consensus 4 ~~~~~v~iiG~G~~gl~~a~~l~~--~g~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 4 DEEYDVIVLGTGLTECILSGIMSV--NGKKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTSCE
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCccccccc
Confidence 345899999999999999999999 66999999999999999873
No 282
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=97.30 E-value=0.00011 Score=87.40 Aligned_cols=42 Identities=29% Similarity=0.509 Sum_probs=38.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||++||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~--~g~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASERPGGRVR 73 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSSSSBTTCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCCcee
Confidence 35799999999999999999999 5699999999999999764
No 283
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=97.22 E-value=0.00017 Score=83.53 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=40.7
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEec
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~~ 52 (1129)
|...+||+|||||.+|+++|..|++ .|++|+++||++.+||.+..
T Consensus 17 ~~~~~dv~iiG~G~~g~~~a~~l~~--~g~~v~~~e~~~~~Gg~~~s 61 (475)
T 3p1w_A 17 QGEHYDVIILGTGLKECILSGLLSH--YGKKILVLDRNPYYGGETAS 61 (475)
T ss_dssp CCCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGCE
T ss_pred ccccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeccCCCCCCccc
Confidence 4456899999999999999999999 67999999999999998874
No 284
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=97.22 E-value=0.00052 Score=81.73 Aligned_cols=61 Identities=18% Similarity=0.148 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHHHhcCCcceeEeceeeeeeccccccCCCCceEEeccccCccceEEecceeeeEEEEecccCC
Q psy12350 98 IAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVT 172 (1129)
Q Consensus 98 ~~~~~~~~yl~~~~~~~~~~~~i~~~~~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~lvvAtG~~~ 172 (1129)
.+...+.+.|.+.+.+.|+ .++++ +|+.+.... +++.+.+.. .++ .....| .||.|+|..+
T Consensus 170 ~~~~~l~~~L~~~a~~~gv--~~~~~-~v~~i~~~~---~~~~~~v~~-~~g--~~~~ad-----~vV~A~G~~S 230 (511)
T 2weu_A 170 FDADEVARYLSEYAIARGV--RHVVD-DVQHVGQDE---RGWISGVHT-KQH--GEISGD-----LFVDCTGFRG 230 (511)
T ss_dssp ECHHHHHHHHHHHHHHTTC--EEEEC-CEEEEEECT---TSCEEEEEE-SSS--CEEECS-----EEEECCGGGC
T ss_pred EcHHHHHHHHHHHHHHCCC--EEEEC-eEeEEEEcC---CCCEEEEEE-CCC--CEEEcC-----EEEECCCcch
Confidence 4778899999999988776 78888 898886521 233233332 222 346677 9999999554
No 285
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=97.18 E-value=0.0002 Score=87.84 Aligned_cols=42 Identities=36% Similarity=0.566 Sum_probs=38.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||++||+||..|.+ .|++|+|||+++.+||.+.
T Consensus 106 ~~~~v~viG~G~~gl~~a~~l~~--~g~~v~~~e~~~~~gg~~~ 147 (662)
T 2z3y_A 106 KTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGRVA 147 (662)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBTTCC
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccc
Confidence 35799999999999999999999 6799999999999999765
No 286
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=97.15 E-value=0.00024 Score=88.45 Aligned_cols=42 Identities=36% Similarity=0.566 Sum_probs=38.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
..++|+|||||++||+||..|.+ .|++|+|||+++.+||.+.
T Consensus 277 ~~~~v~viG~G~aGl~~A~~l~~--~g~~v~v~E~~~~~GG~~~ 318 (852)
T 2xag_A 277 KTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGRVA 318 (852)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTCC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCcCCCcee
Confidence 35799999999999999999999 6799999999999999754
No 287
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=97.14 E-value=0.00025 Score=81.49 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=32.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..||+|||||++|+++|..|++ .|++|+|+||.+..
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~ 39 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAE--RGHRVLVLERHTFF 39 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence 4799999999999999999999 56999999997643
No 288
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=97.13 E-value=0.00019 Score=84.54 Aligned_cols=43 Identities=35% Similarity=0.581 Sum_probs=37.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccCCcCceEec
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTDNVGGTWVY 52 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~~~GG~w~~ 52 (1129)
..++|+|||||++||++|..|.+ .|+ +|+|||+++.+||.|..
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~--~g~~~v~~~e~~~~~gg~~~~ 46 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSE--AGITDLLILEATDHIGGRMHK 46 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSSSSBTTSCE
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCCceEEEeCCCCCCCceee
Confidence 34799999999999999999999 567 89999999999998874
No 289
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=97.11 E-value=0.00022 Score=82.75 Aligned_cols=34 Identities=24% Similarity=0.463 Sum_probs=31.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+||||||+|+++|..|++ .|++|+|+||++
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~--~G~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQ--HDVDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHH--TTCEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHH--CCCeEEEEcCCC
Confidence 3699999999999999999999 679999999965
No 290
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=97.09 E-value=0.00028 Score=76.89 Aligned_cols=34 Identities=29% Similarity=0.535 Sum_probs=30.8
Q ss_pred CeEEEEcCCccHHHHHHHHHhc-CCEEEEEecCCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATT-GKQAVVVGSGQS 903 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~-~~~V~vv~~~~~ 903 (1129)
.+|+|||+|.+|+.+|..|++. |.+|+++++.+.
T Consensus 40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~ 74 (284)
T 1rp0_A 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVS 74 (284)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSS
T ss_pred cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCC
Confidence 3699999999999999999997 999999988653
No 291
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=96.92 E-value=0.00066 Score=76.88 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=31.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+||+|||||.+|+++|..|++ .|++|+|+||+.
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~--~G~~V~vle~~~ 39 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDL 39 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccC
Confidence 34799999999999999999999 569999999965
No 292
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=96.87 E-value=0.00056 Score=82.91 Aligned_cols=40 Identities=20% Similarity=0.393 Sum_probs=36.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceE
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTW 50 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w 50 (1129)
.++|+|||||++|++||..|++ .|++|+|+||.+..||.+
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~--~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVG--AGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCCSSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHh--CCCcEEEEeccCCCCCcc
Confidence 4799999999999999999999 679999999998888744
No 293
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=96.82 E-value=0.00048 Score=77.63 Aligned_cols=35 Identities=20% Similarity=0.297 Sum_probs=31.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCC----CCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~----~~~~v~v~E~~~ 44 (1129)
|||+|||||.+|+++|..|++.| ++.+|+|+|++.
T Consensus 1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~ 39 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF 39 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence 58999999999999999999954 348999999976
No 294
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=96.78 E-value=0.00069 Score=83.84 Aligned_cols=39 Identities=33% Similarity=0.645 Sum_probs=36.0
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.++|+|||||++||+||..|++ .|++|+|+|+++.+||.
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHN--FGIKVTVLEAKDRIGGR 374 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCcEEEEecccceece
Confidence 4799999999999999999999 56899999999999984
No 295
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=96.66 E-value=0.0006 Score=82.51 Aligned_cols=38 Identities=32% Similarity=0.610 Sum_probs=33.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCC------CCceEEEEcccC-Cc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPG------SGFTCTTFEQTD-NV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~------~~~~v~v~E~~~-~~ 46 (1129)
.++|+|||||+|||+||..|.+.| .+++|+|||+++ .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 479999999999999999999833 118999999998 89
No 296
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=96.62 E-value=0.00083 Score=78.49 Aligned_cols=38 Identities=24% Similarity=0.298 Sum_probs=32.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccCCcC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTDNVG 47 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~~~G 47 (1129)
..+||+|||||++|+++|..|++ .| .+|+|+||+..+|
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~--~G~~~V~vlE~~~~~~ 60 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKV--WSGGSVLVVDAGHAPG 60 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--HHCSCEEEEESSSSTT
T ss_pred CcCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEccCCCCC
Confidence 45799999999999999999999 56 7999999954443
No 297
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=96.60 E-value=0.0014 Score=72.37 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=32.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
++|+|||||+||+.||..|++ .|++|+|+|++...+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~--~G~~V~liE~~~~~~ 37 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLR--LGVPVRLFEMRPKRM 37 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCEEEECCTTTSC
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCcEEEEeccCCcC
Confidence 589999999999999999999 679999999977443
No 298
>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}
Probab=96.51 E-value=0.0049 Score=70.82 Aligned_cols=33 Identities=12% Similarity=0.294 Sum_probs=30.5
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
-||+|||+|.+|+=+|..|++.|.+|+|+++.+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~ 34 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNS 34 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 379999999999999999999999999998754
No 299
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=96.37 E-value=0.0032 Score=74.33 Aligned_cols=36 Identities=28% Similarity=0.519 Sum_probs=32.6
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
..++|+|||||.+|+.+|..|++.|.+|+++++.+.
T Consensus 91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~ 126 (497)
T 2bry_A 91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIK 126 (497)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSS
T ss_pred CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccc
Confidence 357899999999999999999999999999988653
No 300
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*
Probab=96.37 E-value=0.0059 Score=69.42 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=32.0
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
..+|+|||+|.+|+.+|..|++.|.+|+++++.+.
T Consensus 11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 45 (379)
T 3alj_A 11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSE 45 (379)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence 46899999999999999999999999999988653
No 301
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Probab=96.33 E-value=0.0012 Score=74.17 Aligned_cols=40 Identities=30% Similarity=0.392 Sum_probs=37.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEccc-CCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQA-DNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~-~~~GG~w~ 781 (1129)
.+++|||+|++||++|..|.+.| ++|+|||++ +.+||.|.
T Consensus 45 ~~V~IIGAGiaGL~aA~~L~~~G--~~V~VlE~~~~~vGGr~~ 85 (376)
T 2e1m_A 45 KRILIVGAGIAGLVAGDLLTRAG--HDVTILEANANRVGGRIK 85 (376)
T ss_dssp CEEEEECCBHHHHHHHHHHHHTS--CEEEEECSCSSCCBTTCC
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CcEEEEeccccccCCcee
Confidence 46899999999999999999999 999999999 99999887
No 302
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=96.32 E-value=0.0013 Score=78.42 Aligned_cols=41 Identities=29% Similarity=0.385 Sum_probs=36.9
Q ss_pred ccCccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.-+++|||||++||+||..|.+. | .+|+|+|+++.+||...
T Consensus 10 ~~DVvIIGaGisGLsaA~~L~k~~G--~~V~VlE~~~~~GG~~~ 51 (513)
T 4gde_A 10 SVDVLVIGAGPTGLGAAKRLNQIDG--PSWMIVDSNETPGGLAS 51 (513)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHCC--SCEEEEESSSSCCGGGC
T ss_pred CCCEEEECCcHHHHHHHHHHHhhCC--CCEEEEECCCCCcCCee
Confidence 35789999999999999999875 8 99999999999999654
No 303
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=96.27 E-value=0.0011 Score=78.76 Aligned_cols=40 Identities=38% Similarity=0.473 Sum_probs=31.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+|+|||+|.+||+||..|.+.| ++|+|+|+++.+||...
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G--~~V~VlEa~~~~GG~~~ 41 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAG--IPVLLLEQRDKPGGRAY 41 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTT--CCEEEECCC-------C
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CcEEEEccCCCCCCcEE
Confidence 47899999999999999999999 99999999999999544
No 304
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2
Probab=96.24 E-value=0.0078 Score=68.85 Aligned_cols=35 Identities=26% Similarity=0.322 Sum_probs=31.9
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
..+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 39 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQ 39 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 46899999999999999999999999999988654
No 305
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=96.16 E-value=0.003 Score=75.83 Aligned_cols=39 Identities=31% Similarity=0.450 Sum_probs=33.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCce
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~ 49 (1129)
.+||+|||||.+|+++|..|++ .|++|+|+||++..+|+
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~--rG~~V~LlE~~~~~~Gt 70 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAA--SGIKTGLIEMQDFAEGT 70 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCSG
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCc
Confidence 4799999999999999999999 56999999997644443
No 306
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=96.10 E-value=0.0053 Score=70.31 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=31.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
.+|+|||+|.+|+-+|..|++.|.+|+++++.+.
T Consensus 7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~ 40 (399)
T 2x3n_A 7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARR 40 (399)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCC
T ss_pred CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCC
Confidence 4799999999999999999999999999987643
No 307
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*
Probab=95.98 E-value=0.0025 Score=72.19 Aligned_cols=43 Identities=19% Similarity=0.241 Sum_probs=39.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+|+++.+||.|...
T Consensus 29 ~~dv~IIGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GG~~~~~ 71 (397)
T 3hdq_A 29 GFDYLIVGAGFAGSVLAERLASSG--QRVLIVDRRPHIGGNAYDC 71 (397)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSSGGGCCE
T ss_pred CCCEEEECccHHHHHHHHHHHHCC--CceEEEeccCCCCCcccee
Confidence 347899999999999999999999 9999999999999999854
No 308
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=95.93 E-value=0.0024 Score=74.04 Aligned_cols=40 Identities=33% Similarity=0.413 Sum_probs=37.2
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|++|+++|+.|.+.| .+|+|+|+++.+||.+..
T Consensus 3 dVvVIGaG~aGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t 42 (431)
T 3k7m_X 3 DAIVVGGGFSGLKAARDLTNAG--KKVLLLEGGERLGGRAYS 42 (431)
T ss_dssp EEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCCE
T ss_pred CEEEECCcHHHHHHHHHHHHcC--CeEEEEecCCCccCeecc
Confidence 6799999999999999999999 999999999999997753
No 309
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=95.89 E-value=0.0056 Score=72.48 Aligned_cols=34 Identities=29% Similarity=0.517 Sum_probs=31.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
.++|+|||+|.+|+-+|..|++.|.+|++++++.
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~ 140 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGK 140 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccC
Confidence 4689999999999999999999999999999864
No 310
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=95.89 E-value=0.0027 Score=72.54 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=35.4
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
|...+|+|||+|++|+++|..|.+.| ++|+||||++.+|.
T Consensus 2 Me~yDViIVGaGpaGl~~A~~La~~G--~~V~v~Er~~~~~~ 41 (397)
T 3oz2_A 2 METYDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRPEIGS 41 (397)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSTTC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCC
Confidence 34458999999999999999999999 99999999887653
No 311
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*
Probab=95.88 E-value=0.017 Score=65.99 Aligned_cols=34 Identities=21% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQ 902 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~ 902 (1129)
..+|+|||||.+|+-+|..|++.|.+|+++++.+
T Consensus 26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 59 (398)
T 2xdo_A 26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDN 59 (398)
T ss_dssp TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSS
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999998764
No 312
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}
Probab=95.85 E-value=0.0033 Score=71.98 Aligned_cols=44 Identities=23% Similarity=0.204 Sum_probs=39.6
Q ss_pred ccCccccccCCchhhHHHHHHhh-CCCcceEEEcccCCcCcccccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA-GNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~-g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
..+++|||+|.+|+++|..|.+. | .+|+|+|+++.+||.+....
T Consensus 7 ~~~v~IiGaG~~Gl~aA~~L~~~~g--~~v~v~E~~~~~GG~~~~~~ 51 (399)
T 1v0j_A 7 RFDLFVVGSGFFGLTIAERVATQLD--KRVLVLERRPHIGGNAYSEA 51 (399)
T ss_dssp SCSEEEECCSHHHHHHHHHHHHHSC--CCEEEECSSSSSSGGGCEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHHhCC--CCEEEEeCCCCCCCeeeecc
Confidence 35789999999999999999999 8 99999999999999887543
No 313
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=95.84 E-value=0.0042 Score=75.48 Aligned_cols=37 Identities=14% Similarity=0.193 Sum_probs=31.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcC----CCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEP----GSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~----~~~~~v~v~E~~~~ 45 (1129)
..||+|||||.|||+||..|++. ++|.+|+|+||...
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence 36999999999999999999984 12689999999754
No 314
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=95.77 E-value=0.0039 Score=69.51 Aligned_cols=41 Identities=29% Similarity=0.447 Sum_probs=38.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.+++|||+|++|+++|..|.+.| .+|+||||++.+||.+..
T Consensus 3 ~dV~IIGaG~~Gl~~A~~L~~~G--~~V~vlE~~~~~gg~~~~ 43 (336)
T 1yvv_A 3 VPIAIIGTGIAGLSAAQALTAAG--HQVHLFDKSRGSGGRMSS 43 (336)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGCE
T ss_pred ceEEEECCcHHHHHHHHHHHHCC--CcEEEEECCCCCccccee
Confidence 47899999999999999999999 999999999999998774
No 315
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=95.74 E-value=0.0038 Score=72.79 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=38.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|.+|+++|..|.+.| .+|+++|+++.+||.+..
T Consensus 11 ~~dvvVIGaG~~GL~aA~~La~~G--~~V~vlE~~~~~GG~~~t 52 (453)
T 2bcg_G 11 DYDVIVLGTGITECILSGLLSVDG--KKVLHIDKQDHYGGEAAS 52 (453)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGCE
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CeEEEEeCCCCCCccccc
Confidence 357899999999999999999999 999999999999998763
No 316
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=95.69 E-value=0.0065 Score=74.05 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=30.7
Q ss_pred cceEEEEcCChHHHHHHHHhh---cCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLT---EPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~---~~~~~~~v~v~E~~~~ 45 (1129)
..||+|||||+|||+||..|+ ++ .|.+|+|+||...
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~-~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKL-GGLKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTT-TTCCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhh-CCCeEEEEeCcCC
Confidence 369999999999999999999 41 3589999999764
No 317
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=95.64 E-value=0.0038 Score=72.14 Aligned_cols=40 Identities=30% Similarity=0.430 Sum_probs=36.9
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|.+|+++|..|.+.| .+|+|+|+++.+||....
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~~ 41 (421)
T 3nrn_A 2 RAVVVGAGLGGLLAGAFLARNG--HEIIVLEKSAMIGGRFTN 41 (421)
T ss_dssp EEEEESCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTSSE
T ss_pred cEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCCCceeEE
Confidence 5789999999999999999999 999999999999997653
No 318
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Probab=95.60 E-value=0.0042 Score=70.60 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=39.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH 785 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~~ 785 (1129)
-+++|||+|.+|+++|..|.+.| ++|+|+|+++.+||.|.....
T Consensus 4 ~~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~~~~~~ 47 (384)
T 2bi7_A 4 KKILIVGAGFSGAVIGRQLAEKG--HQVHIIDQRDHIGGNSYDARD 47 (384)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSSGGGCEEEC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEEecCCcCCccccccc
Confidence 36789999999999999999999 999999999999999875433
No 319
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=95.54 E-value=0.0039 Score=69.82 Aligned_cols=40 Identities=18% Similarity=0.252 Sum_probs=37.3
Q ss_pred CccccccCCchhhHHHHHHh---hCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|++|+++|..|.+ .| ++|+||||++.+||.|..
T Consensus 3 dV~IIGaG~aGl~~A~~L~~~~~~G--~~V~v~Ek~~~~gg~~~~ 45 (342)
T 3qj4_A 3 QVLIVGAGMTGSLCAALLRRQTSGP--LYLAVWDKADDSGGRMTT 45 (342)
T ss_dssp EEEEECCSHHHHHHHHHHHSCC-CC--EEEEEECSSSSSCGGGCE
T ss_pred cEEEECCcHHHHHHHHHHHhhccCC--ceEEEEECCCCCccceee
Confidence 68999999999999999999 88 999999999999998874
No 320
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=95.47 E-value=0.0052 Score=72.28 Aligned_cols=46 Identities=20% Similarity=0.164 Sum_probs=40.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
..+++|||+|.+|+++|..|.+.|++.+|+|+|+++.+||.+....
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~ 49 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYR 49 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEEC
T ss_pred cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEe
Confidence 4578999999999999999999997789999999999999765433
No 321
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=95.46 E-value=0.0046 Score=71.50 Aligned_cols=39 Identities=33% Similarity=0.552 Sum_probs=36.4
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
+++|||+|.+|+++|..|.+.| .+|+|+|+++.+||...
T Consensus 2 dVvVIGaGiaGLsaA~~La~~G--~~V~vlE~~~~~GG~~~ 40 (425)
T 3ka7_A 2 KTVVIGAGLGGLLSAARLSKAG--HEVEVFERLPITGGRFT 40 (425)
T ss_dssp EEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTSS
T ss_pred cEEEECCCHHHHHHHHHHHhCC--CceEEEeCCCCCCCcee
Confidence 4789999999999999999999 99999999999999765
No 322
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=95.40 E-value=0.0048 Score=72.60 Aligned_cols=41 Identities=24% Similarity=0.271 Sum_probs=37.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc--ceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF--TCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~--~v~v~E~~~~~GG~w~~ 782 (1129)
-+++|||+|.+||++|.+|.+.| . +|+|||+++.+||....
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~~G--~~~~V~vlEa~~~~GG~~~t 45 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSRAP--CPPKVVLVESSERLGGWIRS 45 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHTSS--SCCEEEEECSSSSSBTTCCE
T ss_pred ceEEEECCcHHHHHHHHHHHhCC--CCCcEEEEeCCCCCCCceEE
Confidence 36899999999999999999999 7 99999999999997653
No 323
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=95.39 E-value=0.011 Score=67.72 Aligned_cols=36 Identities=22% Similarity=0.411 Sum_probs=32.1
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecCCC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQS 903 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~~~ 903 (1129)
+..+|+|||||.+|+-+|..|++.|.+|+++++.+.
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~ 57 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKE 57 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence 446899999999999999999999999999998653
No 324
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Probab=95.36 E-value=0.0064 Score=70.29 Aligned_cols=44 Identities=30% Similarity=0.426 Sum_probs=38.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTE 784 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~~ 784 (1129)
.+++|||+|++||++|..|.+.|. .+|+|||+++.+||.+....
T Consensus 7 ~~v~IIGaG~aGl~aA~~L~~~g~-~~v~v~E~~~~~GG~~~t~~ 50 (424)
T 2b9w_A 7 SRIAIIGAGPAGLAAGMYLEQAGF-HDYTILERTDHVGGKCHSPN 50 (424)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CCEEEECSSSCSSTTCCCCE
T ss_pred CCEEEECcCHHHHHHHHHHHhCCC-CcEEEEECCCCCCCcccccC
Confidence 478999999999999999999873 68999999999999776443
No 325
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=95.36 E-value=0.011 Score=70.75 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=41.5
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcCceEe
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~GG~w~ 51 (1129)
||. .+...+||+|||+|..|-..|..|++ .|.+|.++||++++||.|.
T Consensus 1 m~~-~~~~~~D~~i~GtGl~~~~~a~~~~~--~g~~vl~id~~~~~gg~~~ 48 (650)
T 1vg0_A 1 MAD-NLPSDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRSYYGGNWA 48 (650)
T ss_dssp --C-CCCSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGC
T ss_pred CCc-cCCCcCCEEEECCcHHHHHHHHHHHh--CCCEEEEEcCCCcccCccc
Confidence 555 34456899999999999999999999 6799999999999999988
No 326
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*
Probab=95.36 E-value=0.0056 Score=72.81 Aligned_cols=43 Identities=28% Similarity=0.380 Sum_probs=37.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|.+||+||..|.+.| ..+|+|+|+++.+||.+..
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~~~G-~~~V~VlEa~~riGGr~~t 50 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLHQNG-IQDCLVLEARDRVGGRLQT 50 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHHHTT-CCSEEEECSSSSSBTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHhcC-CCCEEEEeCCCCCCCceee
Confidence 347899999999999999999987 3789999999999997653
No 327
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=95.30 E-value=0.0058 Score=72.19 Aligned_cols=40 Identities=30% Similarity=0.457 Sum_probs=36.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|.+||++|..|.+.| .+|+|||+++.+||.+.
T Consensus 12 ~~v~IIGaG~aGl~aA~~L~~~g--~~v~v~E~~~~~GG~~~ 51 (489)
T 2jae_A 12 HSVVVLGGGPAGLCSAFELQKAG--YKVTVLEARTRPGGRVW 51 (489)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTCC
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CCEEEEeccCCCCCcee
Confidence 46899999999999999999999 99999999999999654
No 328
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7
Probab=95.30 E-value=0.0062 Score=68.74 Aligned_cols=40 Identities=20% Similarity=0.242 Sum_probs=37.1
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
+++|||+|++|+++|..|.+.| .+|+|+|+++.+||.+..
T Consensus 3 ~v~iiG~G~~Gl~~A~~l~~~g--~~v~v~E~~~~~GG~~~~ 42 (367)
T 1i8t_A 3 DYIIVGSGLFGAVCANELKKLN--KKVLVIEKRNHIGGNAYT 42 (367)
T ss_dssp EEEEECCSHHHHHHHHHHGGGT--CCEEEECSSSSSSGGGCE
T ss_pred CEEEECcCHHHHHHHHHHHhCC--CcEEEEecCCCCCcceEe
Confidence 5789999999999999999999 999999999999998764
No 329
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...
Probab=95.29 E-value=0.0062 Score=72.51 Aligned_cols=41 Identities=29% Similarity=0.532 Sum_probs=37.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.+++|||+|.+||++|..|.+.| ++|+|+|+++.+||....
T Consensus 5 ~~vvIIGaG~aGL~aA~~L~~~G--~~V~vlE~~~~~GGr~~t 45 (520)
T 1s3e_A 5 CDVVVVGGGISGMAAAKLLHDSG--LNVVVLEARDRVGGRTYT 45 (520)
T ss_dssp CSEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSSSBTTCCE
T ss_pred ceEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCceee
Confidence 47899999999999999999999 999999999999997653
No 330
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*
Probab=95.29 E-value=0.0065 Score=70.95 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=37.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.+++|||+|++||++|..|.+.| .+|+|+|+++.+||.+..
T Consensus 6 ~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~~~ 46 (453)
T 2yg5_A 6 RDVAIVGAGPSGLAAATALRKAG--LSVAVIEARDRVGGRTWT 46 (453)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTCCE
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEECCCCCCCceec
Confidence 47899999999999999999999 999999999999998753
No 331
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=95.28 E-value=0.011 Score=70.54 Aligned_cols=37 Identities=27% Similarity=0.473 Sum_probs=32.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
+.+|+||||||+||..+|.+|.+. .+++|+|+|+...
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~~ 52 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGEE 52 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSBC
T ss_pred CCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCCC
Confidence 468999999999999999999973 5789999999653
No 332
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=95.19 E-value=0.017 Score=68.92 Aligned_cols=32 Identities=19% Similarity=0.521 Sum_probs=30.1
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
-.|+|||||.+|+++|..+++.|.+|.++++.
T Consensus 29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~ 60 (651)
T 3ces_A 29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHN 60 (651)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECChHHHHHHHHHHHhCCCCEEEEeec
Confidence 37999999999999999999999999999875
No 333
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=95.13 E-value=0.012 Score=70.29 Aligned_cols=36 Identities=28% Similarity=0.514 Sum_probs=32.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..+||+|||||++|+++|.+|.+ .+.+|+|+|+...
T Consensus 6 ~~~D~iIvG~G~aG~~~A~~L~~--~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 6 TPYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGGP 41 (546)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCC
T ss_pred CceeEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence 35899999999999999999999 5799999999764
No 334
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=95.09 E-value=0.0066 Score=71.18 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=37.8
Q ss_pred cCccccccCCchhhHHHHHHhhC----CCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAG----NGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g----~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|.+||++|..|.+.| +..+|+|+|+++.+||...
T Consensus 6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~ 51 (470)
T 3i6d_A 6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQ 51 (470)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCC
T ss_pred CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEE
Confidence 47899999999999999999998 6689999999999998654
No 335
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=95.04 E-value=0.0052 Score=72.73 Aligned_cols=40 Identities=45% Similarity=0.497 Sum_probs=36.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|.+||++|..|.+.| ++|+|+|+++.+||...
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~~g--~~v~v~E~~~~~GGr~~ 79 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTVAG--FKTLLLEARDRIGGRSW 79 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHHTT--CCEEEECSSSBSBTTCC
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CCEEEEeCCCCCCCcce
Confidence 46899999999999999999999 99999999999999654
No 336
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=94.94 E-value=0.0082 Score=71.17 Aligned_cols=42 Identities=29% Similarity=0.337 Sum_probs=38.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYT 783 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~~ 783 (1129)
.+++|||+|.+||++|..|.+.| ++|+|+|+++.+||.+...
T Consensus 14 ~~v~iiG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~GG~~~~~ 55 (504)
T 1sez_A 14 KRVAVIGAGVSGLAAAYKLKIHG--LNVTVFEAEGKAGGKLRSV 55 (504)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTS--CEEEEECSSSSSCSSCCEE
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEEeCCCCCCceeee
Confidence 46899999999999999999999 9999999999999977643
No 337
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=94.93 E-value=0.021 Score=67.90 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=30.0
Q ss_pred CeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 870 KQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
-.|+|||||.+|+++|..+++.|.+|.++++.
T Consensus 28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~ 59 (637)
T 2zxi_A 28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLN 59 (637)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCCEEEEEec
Confidence 36999999999999999999999999999876
No 338
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=94.89 E-value=0.0091 Score=70.21 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=37.5
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|+++.+||....
T Consensus 16 ~~~v~iiG~G~~Gl~aa~~l~~~g--~~v~v~E~~~~~GGr~~t 57 (478)
T 2ivd_A 16 GMNVAVVGGGISGLAVAHHLRSRG--TDAVLLESSARLGGAVGT 57 (478)
T ss_dssp -CCEEEECCBHHHHHHHHHHHTTT--CCEEEECSSSSSBTTCCE
T ss_pred CCcEEEECCCHHHHHHHHHHHHCC--CCEEEEEcCCCCCceeee
Confidence 347899999999999999999999 999999999999996553
No 339
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=94.82 E-value=0.01 Score=67.83 Aligned_cols=41 Identities=29% Similarity=0.471 Sum_probs=37.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|++|+.+|..|.+.| .+|+|+|+++.+|+.|.
T Consensus 4 ~~dViIIGgG~aGl~aA~~la~~G--~~V~vlEk~~~~g~~~~ 44 (401)
T 2gqf_A 4 YSENIIIGAGAAGLFCAAQLAKLG--KSVTVFDNGKKIGRKIL 44 (401)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHH
T ss_pred CCCEEEECCcHHHHHHHHHHHhCC--CCEEEEeCCCCCchhcE
Confidence 458899999999999999999999 99999999998887665
No 340
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=94.78 E-value=0.0096 Score=68.30 Aligned_cols=41 Identities=12% Similarity=0.127 Sum_probs=37.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|++|+.+|..|.+.| .+|+|+|+++.+|+.+.
T Consensus 27 ~~dViIIGgG~AGl~aA~~La~~G--~~V~llEk~~~~g~~~~ 67 (417)
T 3v76_A 27 KQDVVIIGAGAAGMMCAIEAGKRG--RRVLVIDHARAPGEKIR 67 (417)
T ss_dssp -CCEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCceeE
Confidence 458999999999999999999999 99999999999988764
No 341
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=94.71 E-value=0.02 Score=68.42 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=32.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..+|++|||||.||+++|.+|.+. .+.+|+|+|+...
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse~-~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAEN-PNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTTS-TTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCCC
Confidence 458999999999999999999984 2479999999764
No 342
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=94.71 E-value=0.016 Score=69.00 Aligned_cols=35 Identities=20% Similarity=0.408 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..+|++|||||+||+++|.+|.+ + .+|+|+|+...
T Consensus 25 ~~yD~IIVGsG~AG~v~A~rLse-g--~~VlvLEaG~~ 59 (536)
T 1ju2_A 25 GSYDYVIVGGGTSGCPLAATLSE-K--YKVLVLERGSL 59 (536)
T ss_dssp EEEEEEEECCSTTHHHHHHHHTT-T--SCEEEECSSBC
T ss_pred CcccEEEECccHHHHHHHHHHhc-C--CcEEEEecCCC
Confidence 34799999999999999999998 4 89999999764
No 343
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*
Probab=94.67 E-value=0.013 Score=68.89 Aligned_cols=43 Identities=33% Similarity=0.326 Sum_probs=38.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|++|+++|..|.+.| ..+|+|||+++.+||.|..
T Consensus 9 ~~~v~iiG~G~~Gl~~A~~l~~~g-~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 9 TPKIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp SCCEEEECCSHHHHHHHHHHHHTT-CCSEEEEESSSSSSGGGCE
T ss_pred CCCEEEECcCHHHHHHHHHHHHcC-CCCEEEEeCCCCCCCeeee
Confidence 357899999999999999999987 2589999999999999985
No 344
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=94.65 E-value=0.021 Score=68.10 Aligned_cols=36 Identities=33% Similarity=0.486 Sum_probs=32.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|++|||||.||+++|.+|.+. ++.+|+|+|+..
T Consensus 18 ~~yDyIIVGgG~AG~vlA~RLse~-~~~~VLlLEaG~ 53 (583)
T 3qvp_A 18 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGS 53 (583)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEECSSC
T ss_pred CCccEEEECCcHHHHHHHHHHHhC-CCCcEEEEecCC
Confidence 458999999999999999999874 578999999976
No 345
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=94.64 E-value=0.014 Score=63.89 Aligned_cols=40 Identities=25% Similarity=0.471 Sum_probs=35.7
Q ss_pred cCccccccCCchhhHHHHHHhh--CCCcceEEEcccCCcC-cccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADNIG-GTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~~G-G~w~ 781 (1129)
.+++|||+|++|+++|..|.+. | ++|+|+|+++..| |+|.
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g--~~V~v~e~~~~~ggg~~~ 108 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPD--LKVCIIESSVAPGGGSWL 108 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTT--SCEEEECSSSSCCTTTTC
T ss_pred CCEEEECccHHHHHHHHHHHhcCCC--CeEEEEecCccccccccc
Confidence 4789999999999999999998 7 9999999999887 4554
No 346
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=94.61 E-value=0.022 Score=67.24 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=33.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCcC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~G 47 (1129)
.++|+|||||++|+++|..|.+ .+.+|+|+|+....+
T Consensus 5 ~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~~~~ 41 (504)
T 1n4w_A 5 YVPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQLWN 41 (504)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCC
Confidence 4899999999999999999999 679999999977543
No 347
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=94.57 E-value=0.013 Score=66.82 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=36.0
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
...+++|||+|++|+++|..|.+.| ++|+|+|+++.+|+.+
T Consensus 3 ~~~dVvIvG~G~aGl~~A~~La~~G--~~V~l~E~~~~~g~~~ 43 (397)
T 3cgv_A 3 ETYDVLVVGGGPGGSTAARYAAKYG--LKTLMIEKRPEIGSPV 43 (397)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSTTCSC
T ss_pred ccCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCCCCc
Confidence 3457899999999999999999999 9999999998777633
No 348
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Probab=94.49 E-value=0.012 Score=69.52 Aligned_cols=40 Identities=28% Similarity=0.346 Sum_probs=37.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+++.+||.+.
T Consensus 34 ~~v~IiGaG~~Gl~aA~~l~~~g--~~v~vlE~~~~~gg~~~ 73 (498)
T 2iid_A 34 KHVVIVGAGMAGLSAAYVLAGAG--HQVTVLEASERPGGRVR 73 (498)
T ss_dssp CEEEEECCBHHHHHHHHHHHHHT--CEEEEECSSSSSBTTCC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEECCCCCCCcee
Confidence 46799999999999999999999 99999999999999764
No 349
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Probab=94.23 E-value=0.014 Score=68.41 Aligned_cols=45 Identities=38% Similarity=0.482 Sum_probs=39.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcccccCCCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGTWLYTEHI 786 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~w~~~~~~ 786 (1129)
.+++|||+|++|+++|..|.+.| . +|+|+|+++.+||.|......
T Consensus 5 ~~~~iiG~G~~g~~~a~~l~~~g--~~~v~~~e~~~~~gg~~~~~~~~ 50 (472)
T 1b37_A 5 PRVIVVGAGMSGISAAKRLSEAG--ITDLLILEATDHIGGRMHKTNFA 50 (472)
T ss_dssp CCEEEECCBHHHHHHHHHHHHTT--CCCEEEECSSSSSBTTSCEEEET
T ss_pred CeEEEECCCHHHHHHHHHHHhcC--CCceEEEeCCCCCCCceeecccC
Confidence 46789999999999999999999 8 899999999999988755443
No 350
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=94.23 E-value=0.018 Score=66.55 Aligned_cols=41 Identities=15% Similarity=0.069 Sum_probs=38.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
.+++|||+|.+|+++|..|.+.| .+|+++|+++.+||.|..
T Consensus 7 ~~v~iiG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~s 47 (433)
T 1d5t_A 7 YDVIVLGTGLTECILSGIMSVNG--KKVLHMDRNPYYGGESSS 47 (433)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTSCE
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCccccccc
Confidence 47899999999999999999999 999999999999998764
No 351
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=94.17 E-value=0.036 Score=65.37 Aligned_cols=36 Identities=33% Similarity=0.456 Sum_probs=32.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..++++|||||++|+.+|..|.+ .+.+|+|+|++..
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCCC
Confidence 45899999999999999999999 6799999999764
No 352
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=93.96 E-value=0.02 Score=64.53 Aligned_cols=36 Identities=31% Similarity=0.374 Sum_probs=32.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||++.+|
T Consensus 5 ~dvvIIG~G~~Gl~~A~~La~~G--~~V~vlE~~~~~~ 40 (369)
T 3dme_A 5 IDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAEGIG 40 (369)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCC
Confidence 47899999999999999999999 9999999987655
No 353
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=93.81 E-value=0.024 Score=62.30 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=35.5
Q ss_pred ccCccccccCCchhhHHHHHHhh--CCCcceEEEcccCCcCc-cc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADNIGG-TW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~~GG-~w 780 (1129)
..+++|||+|++|+++|..|.+. | .+|+|+|++..+|| .|
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G--~~V~LiEk~~~~GGg~~ 121 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPD--LRITIVEAGVAPGGGAW 121 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTT--SCEEEEESSSSCCTTTT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCC--CEEEEEeCCCccCCccc
Confidence 45899999999999999999998 7 99999999988875 45
No 354
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=93.73 E-value=0.033 Score=66.28 Aligned_cols=37 Identities=24% Similarity=0.335 Sum_probs=32.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
.+|++|||||+||+++|.+|.+. ++.+|+|+|+....
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCcc
Confidence 37999999999999999999973 57999999997654
No 355
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Probab=93.66 E-value=0.022 Score=69.67 Aligned_cols=42 Identities=29% Similarity=0.417 Sum_probs=38.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLY 782 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~~ 782 (1129)
..+++|||+|++|+++|..|.+.| ++|+|||+++.+||.+..
T Consensus 107 ~~~v~viG~G~~gl~~a~~l~~~g--~~v~~~e~~~~~gg~~~~ 148 (662)
T 2z3y_A 107 TGKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVAT 148 (662)
T ss_dssp CCEEEEECCBHHHHHHHHHHHHTT--CEEEEECSSSSSBTTCCE
T ss_pred CCeEEEECcCHHHHHHHHHHHHCC--CeEEEEecCCCCCCcccc
Confidence 346799999999999999999999 999999999999997653
No 356
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A
Probab=93.64 E-value=0.023 Score=70.72 Aligned_cols=40 Identities=30% Similarity=0.454 Sum_probs=37.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|++||++|..|.+.| ++|+|||+++.+||.+.
T Consensus 279 ~~v~viG~G~aGl~~A~~l~~~g--~~v~v~E~~~~~GG~~~ 318 (852)
T 2xag_A 279 GKVIIIGSGVSGLAAARQLQSFG--MDVTLLEARDRVGGRVA 318 (852)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSSSSCTTCC
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CcEEEEEecCcCCCcee
Confidence 46799999999999999999999 99999999999999765
No 357
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=93.57 E-value=0.027 Score=65.09 Aligned_cols=41 Identities=15% Similarity=0.083 Sum_probs=38.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|.+|+++|..|.+.| .+|+++|+++.+||.+.
T Consensus 20 ~~dv~iiG~G~~g~~~a~~l~~~g--~~v~~~e~~~~~Gg~~~ 60 (475)
T 3p1w_A 20 HYDVIILGTGLKECILSGLLSHYG--KKILVLDRNPYYGGETA 60 (475)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeccCCCCCCcc
Confidence 357899999999999999999999 99999999999999765
No 358
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=93.54 E-value=0.026 Score=66.87 Aligned_cols=42 Identities=21% Similarity=0.246 Sum_probs=37.5
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
....+++|||+|.+|+++|..|.+.| .+|+|+||.+.+||.-
T Consensus 39 ~~~~DVvVVGaG~AGl~AA~~aa~~G--~~V~vlEk~~~~GG~s 80 (510)
T 4at0_A 39 DYEADVVVAGYGIAGVAASIEAARAG--ADVLVLERTSGWGGAT 80 (510)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTG
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCcc
Confidence 34568899999999999999999999 9999999999888753
No 359
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=93.34 E-value=0.058 Score=64.25 Aligned_cols=38 Identities=24% Similarity=0.407 Sum_probs=33.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCCc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV 46 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~~ 46 (1129)
..++++|||||++|+++|.+|.+. ++.+|+|+|++...
T Consensus 12 ~~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 12 REFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPDD 49 (546)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCCC
T ss_pred CcCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCcC
Confidence 358999999999999999999984 27899999997653
No 360
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=93.32 E-value=0.033 Score=66.93 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=37.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+|+|||+|++|+++|..|.+.| .+|+|+||.+.+||...
T Consensus 126 ~~DVvVVGaG~aGl~aA~~la~~G--~~V~vlEk~~~~gg~s~ 166 (571)
T 1y0p_A 126 TVDVVVVGSGGAGFSAAISATDSG--AKVILIEKEPVIGGNAK 166 (571)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCTTGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCchh
Confidence 348899999999999999999999 99999999999988655
No 361
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=93.07 E-value=0.036 Score=64.20 Aligned_cols=38 Identities=13% Similarity=0.213 Sum_probs=34.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCcCcc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNIGGT 779 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~GG~ 779 (1129)
.+++|||+|.+|+++|..|.+.| . +|+|+|+++..||.
T Consensus 7 ~dVvIIGgG~aGlsaA~~La~~G--~~~V~vlE~~~~~~~~ 45 (438)
T 3dje_A 7 SSLLIVGAGTWGTSTALHLARRG--YTNVTVLDPYPVPSAI 45 (438)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTT--CCCEEEEESSCSSCTT
T ss_pred CCEEEECCCHHHHHHHHHHHHcC--CCcEEEEeCCCCCCCC
Confidence 57899999999999999999999 8 99999998866553
No 362
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=92.94 E-value=0.036 Score=64.39 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=35.5
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||.+.+|+..
T Consensus 27 ~dVvIIGgG~aGl~aA~~la~~G--~~V~llEk~~~~g~~~ 65 (447)
T 2i0z_A 27 YDVIVIGGGPSGLMAAIGAAEEG--ANVLLLDKGNKLGRKL 65 (447)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CCEEEEECCCCCCcee
Confidence 58899999999999999999999 9999999998887644
No 363
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=92.87 E-value=0.036 Score=62.74 Aligned_cols=37 Identities=19% Similarity=0.136 Sum_probs=33.0
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..-+++|||+|.+|+++|.+|. +| .+|+|+|+++.+|
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La-~G--~~V~vlE~~~~~g 44 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLS-AH--GRVVVLEREAQPG 44 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHT-TT--SCEEEECSSSSTT
T ss_pred CcCCEEEECCcHHHHHHHHHHh-CC--CCEEEEECCCCcc
Confidence 3568899999999999999999 58 9999999987775
No 364
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=92.87 E-value=0.041 Score=66.10 Aligned_cols=39 Identities=28% Similarity=0.478 Sum_probs=35.4
Q ss_pred ccCccccccCCchhhHHHHHHhh------CCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA------GNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~------g~~~~v~v~E~~~~~GG~ 779 (1129)
..+++|||+|++|+++|..|.+. | ++|+|+||.+.+|+.
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~~~~~~~~G--~~V~vlEk~~~~g~~ 79 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQLAAQHEKD--LRVCLVEKAAHIGAH 79 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCC--CCEEEECSSSSTTTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhcccccCCC--CcEEEEeCCCCCCCc
Confidence 45899999999999999999998 7 999999999888764
No 365
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*
Probab=92.82 E-value=0.041 Score=63.07 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=32.9
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcc-eEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFT-CTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~-v~v~E~~~~~G 777 (1129)
.+++|||+|++|+++|..|.+.| ++ |+|+||.+.++
T Consensus 5 ~dVvIVGaG~aGl~~A~~L~~~G--~~~v~v~E~~~~~~ 41 (410)
T 3c96_A 5 IDILIAGAGIGGLSCALALHQAG--IGKVTLLESSSEIR 41 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTT--CSEEEEEESSSSCC
T ss_pred CeEEEECCCHHHHHHHHHHHhCC--CCeEEEEECCCCcc
Confidence 47899999999999999999999 99 99999987654
No 366
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}
Probab=92.68 E-value=0.04 Score=62.46 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=31.4
Q ss_pred CccccccCCchhhHHHHHHhh--CCCcceEEEcccCCc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADNI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~~ 776 (1129)
+++|||+|++|+++|..|.+. | ++|+|+||++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~~~G--~~V~v~E~~~~~ 37 (381)
T 3c4a_A 2 KILVIGAGPAGLVFASQLKQARPL--WAIDIVEKNDEQ 37 (381)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCTT--SEEEEECSSCTT
T ss_pred eEEEECCCHHHHHHHHHHHhcCCC--CCEEEEECCCCC
Confidence 478999999999999999999 7 999999998765
No 367
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=92.62 E-value=0.08 Score=63.56 Aligned_cols=37 Identities=30% Similarity=0.365 Sum_probs=32.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
..++++|||||++|+++|.+|.+. .+.+|+|+|++..
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~~ 59 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFY 59 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCCc
Confidence 358999999999999999999983 4689999999764
No 368
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=92.62 E-value=0.043 Score=62.61 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=31.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||.+..
T Consensus 5 ~DVvIIGaG~~Gl~~A~~La~~G--~~V~vlE~~~~~ 39 (397)
T 2oln_A 5 YDVVVVGGGPVGLATAWQVAERG--HRVLVLERHTFF 39 (397)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCTT
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCCC
Confidence 47899999999999999999999 999999997643
No 369
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=92.59 E-value=0.042 Score=65.96 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=36.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+||.+.+||...
T Consensus 121 ~~DVvVVG~G~aGl~aA~~la~~G--~~V~vlEk~~~~gg~s~ 161 (566)
T 1qo8_A 121 TTQVLVVGAGSAGFNASLAAKKAG--ANVILVDKAPFSGGNSM 161 (566)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHT--CCEEEECSSSSSCTTGG
T ss_pred CCCEEEECCCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCccc
Confidence 347899999999999999999999 99999999998887543
No 370
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=92.47 E-value=0.044 Score=62.03 Aligned_cols=38 Identities=18% Similarity=0.089 Sum_probs=33.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
..+++|||+|++|+++|..|.+.| .+|+|+|+....+|
T Consensus 17 ~~dvvIIGgG~~Gl~~A~~La~~G--~~V~llE~~~~~~g 54 (382)
T 1ryi_A 17 HYEAVVIGGGIIGSAIAYYLAKEN--KNTALFESGTMGGR 54 (382)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTTT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCC--CcEEEEeCCCCCcc
Confidence 457899999999999999999999 99999999764443
No 371
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=92.47 E-value=0.046 Score=61.67 Aligned_cols=36 Identities=19% Similarity=0.075 Sum_probs=32.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+.+..+
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~~G--~~V~vle~~~~~~ 38 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATRAG--LNVLMTDAHMPPH 38 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHHTT--CCEEEECSSCSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEecCCCCC
Confidence 46899999999999999999999 9999999977543
No 372
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=92.35 E-value=0.099 Score=60.55 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=31.5
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|.|||.|.+|+++|+.|++ .|++|+++|++.
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~ 42 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKP 42 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSC
T ss_pred CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCc
Confidence 45899999999999999999999 679999999854
No 373
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=92.26 E-value=0.12 Score=50.01 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=31.0
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||+|.-|...|+.|++ .|++|+++|++.
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 35799999999999999999999 568999999854
No 374
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=92.22 E-value=0.053 Score=62.31 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=31.0
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+++
T Consensus 6 ~dVvIIGgG~aGl~~A~~La~~G--~~V~v~E~~~ 38 (421)
T 3nix_A 6 VDVLVIGAGPAGTVAASLVNKSG--FKVKIVEKQK 38 (421)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred CcEEEECCCHHHHHHHHHHHhCC--CCEEEEeCCC
Confidence 47899999999999999999999 9999999986
No 375
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=92.16 E-value=0.054 Score=61.63 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=31.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+||.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~~G--~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHKAG--IDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHT--CCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHHCC--CCEEEEeCCCC
Confidence 47899999999999999999999 99999999764
No 376
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=92.09 E-value=0.054 Score=61.43 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=32.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+.+..+
T Consensus 4 ~dvvIIGaG~~Gl~~A~~La~~G--~~V~vie~~~~~~ 39 (389)
T 2gf3_A 4 FDVIVVGAGSMGMAAGYQLAKQG--VKTLLVDAFDPPH 39 (389)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSSC
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CeEEEEeCCCCCC
Confidence 47899999999999999999999 9999999976443
No 377
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=92.04 E-value=0.054 Score=66.65 Aligned_cols=36 Identities=11% Similarity=-0.037 Sum_probs=33.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+++.+|
T Consensus 265 ~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~g 300 (689)
T 3pvc_A 265 DDIAIIGGGIVSALTALALQRRG--AVVTLYCADAQPA 300 (689)
T ss_dssp SSEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSSTT
T ss_pred CCEEEECCcHHHHHHHHHHHHCC--CcEEEEeCCCccc
Confidence 57899999999999999999999 9999999987665
No 378
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=91.97 E-value=0.13 Score=48.47 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=29.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|+.|.+ .+++|+++|++.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~~ 37 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDIDK 37 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 3689999999999999999999 568999999843
No 379
>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*
Probab=91.97 E-value=0.052 Score=67.06 Aligned_cols=39 Identities=36% Similarity=0.576 Sum_probs=36.0
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+++.+||.
T Consensus 336 ~~~v~viG~G~~Gl~aA~~l~~~g--~~v~v~E~~~~~ggr 374 (776)
T 4gut_A 336 NKSVIIIGAGPAGLAAARQLHNFG--IKVTVLEAKDRIGGR 374 (776)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHT--CEEEEECSSSSSCTT
T ss_pred CCeEEEECCCHHHHHHHHHHHHCC--CcEEEEecccceece
Confidence 357899999999999999999999 999999999999993
No 380
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=91.89 E-value=0.061 Score=63.33 Aligned_cols=38 Identities=24% Similarity=0.274 Sum_probs=33.5
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..-+|+|||+|++|+++|..|.+.| ++|+|+||.+..+
T Consensus 10 ~~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~ 47 (500)
T 2qa1_A 10 SDAAVIVVGAGPAGMMLAGELRLAG--VEVVVLERLVERT 47 (500)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHHTT--CCEEEEESCCC-C
T ss_pred CCCCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence 4568899999999999999999999 9999999987653
No 381
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=91.84 E-value=0.063 Score=60.77 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=32.2
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|++. +|
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~~G--~~V~lle~~~-~~ 40 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAKRG--EEVTVIEKRF-IG 40 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSS-TT
T ss_pred cCCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCC-CC
Confidence 357899999999999999999999 9999999974 44
No 382
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=91.74 E-value=0.055 Score=66.45 Aligned_cols=36 Identities=11% Similarity=0.085 Sum_probs=33.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.| .+|+|+|+++.+|
T Consensus 273 ~DVvIIGgGiaGlsaA~~La~~G--~~V~vlEk~~~~g 308 (676)
T 3ps9_A 273 REAAIIGGGIASALLSLALLRRG--WQVTLYCADEAPA 308 (676)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTT--CEEEEEESSSSSS
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCCccc
Confidence 57899999999999999999999 9999999987776
No 383
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=91.68 E-value=0.054 Score=63.02 Aligned_cols=36 Identities=14% Similarity=0.114 Sum_probs=32.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+.+..
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~~G--~~V~vlE~~~~~ 41 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSRRG--LKILLVDSKPWN 41 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSSSS--CCEEEECSSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCC
Confidence 358999999999999999999999 999999998753
No 384
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=91.67 E-value=0.17 Score=47.79 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=30.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.+|+|||+|.-|...|+.|.+ .|++|+++|++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~~ 40 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETSR 40 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence 4689999999999999999999 669999999954
No 385
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}
Probab=91.61 E-value=0.049 Score=62.82 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=31.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
..+++|||+|++|+++|..|.+.| ++|+|+|+++
T Consensus 22 ~~~ViIVGaGpaGl~~A~~La~~G--~~V~viE~~~ 55 (430)
T 3ihm_A 22 KKRIGIVGAGTAGLHLGLFLRQHD--VDVTVYTDRK 55 (430)
T ss_dssp -CEEEEECCHHHHHHHHHHHHHTT--CEEEEEESCC
T ss_pred CCCEEEECCcHHHHHHHHHHHHCC--CeEEEEcCCC
Confidence 357899999999999999999999 9999999975
No 386
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=91.58 E-value=0.063 Score=63.16 Aligned_cols=37 Identities=27% Similarity=0.300 Sum_probs=33.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.-+|+|||+|++|+++|..|.+.| ++|+|+||.+..+
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La~~G--~~v~vlE~~~~~~ 48 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELRLGG--VDVMVLEQLPQRT 48 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCSSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEECCCCCC
Confidence 347899999999999999999999 9999999987653
No 387
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=91.58 E-value=0.069 Score=63.76 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=33.2
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+|+|||+|++|+++|..|.+.| .+|+|+||.+..+
T Consensus 27 ~dVlIVGaGpaGl~~A~~La~~G--~~V~vlEr~~~~~ 62 (549)
T 2r0c_A 27 TDVLILGGGPVGMALALDLAHRQ--VGHLVVEQTDGTI 62 (549)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTT--CCEEEECSSCSCC
T ss_pred CCEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence 47899999999999999999999 9999999988664
No 388
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=91.34 E-value=0.16 Score=46.01 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=30.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCC-ceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSG-FTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~-~~v~v~E~~~ 44 (1129)
.++|+|+|+|..|...++.|.+ .| ++|++++++.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~--~g~~~v~~~~r~~ 39 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKT--SSNYSVTVADHDL 39 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--CSSEEEEEEESCH
T ss_pred cCeEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCH
Confidence 3689999999999999999999 56 8999999853
No 389
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*
Probab=91.21 E-value=0.19 Score=48.50 Aligned_cols=40 Identities=25% Similarity=0.319 Sum_probs=32.3
Q ss_pred CCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 862 RTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 862 ~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
.-++...+++|+|+|+|..|.-+|..|.+.|.+|+++.+.
T Consensus 12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~ 51 (155)
T 2g1u_A 12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKN 51 (155)
T ss_dssp -----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred hhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 3345567899999999999999999999999999999764
No 390
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=91.14 E-value=0.077 Score=64.11 Aligned_cols=40 Identities=23% Similarity=0.333 Sum_probs=36.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
..+++|||+|++|+.+|..|.+.| ++|+|+|+.+..||.+
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~~G--~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVGAG--YKVAMFDIGEIDSGLK 85 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCCCSSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--CcEEEEeccCCCCCcc
Confidence 357899999999999999999999 9999999999888755
No 391
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=91.07 E-value=0.083 Score=62.47 Aligned_cols=33 Identities=27% Similarity=0.316 Sum_probs=31.1
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
.+++|||+|++|+++|..|.+.| ++|+|+|+.+
T Consensus 8 ~dVvIVGgG~aGl~aA~~La~~G--~~V~liE~~~ 40 (512)
T 3e1t_A 8 FDLIVIGGGPGGSTLASFVAMRG--HRVLLLEREA 40 (512)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHhCC--CCEEEEccCC
Confidence 57899999999999999999999 9999999986
No 392
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*
Probab=91.07 E-value=0.063 Score=59.99 Aligned_cols=35 Identities=14% Similarity=0.098 Sum_probs=31.3
Q ss_pred CccccccCCchhhHHHHHHhhC----CCcceEEEcccCC
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAG----NGFTCTTFEQADN 775 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g----~~~~v~v~E~~~~ 775 (1129)
+++|||+|.+|+++|..|.+.| |..+|+|+|++..
T Consensus 2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCG
T ss_pred cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCC
Confidence 5789999999999999999997 5589999999763
No 393
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=91.05 E-value=0.074 Score=63.37 Aligned_cols=36 Identities=22% Similarity=0.332 Sum_probs=32.8
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+||.+..+
T Consensus 6 ~dVlIVGaG~aGl~~A~~La~~G--~~v~viEr~~~~~ 41 (535)
T 3ihg_A 6 VDVLVVGAGLGGLSTAMFLARQG--VRVLVVERRPGLS 41 (535)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEECSSSSCC
T ss_pred CcEEEECcCHHHHHHHHHHHHCC--CCEEEEeCCCCCC
Confidence 57899999999999999999999 9999999987543
No 394
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=91.04 E-value=0.078 Score=63.34 Aligned_cols=40 Identities=20% Similarity=0.067 Sum_probs=35.3
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|++|+.+|..|.+.| .+|+|+|+++-.+|+-.
T Consensus 19 ~DVvVIGgGi~Gl~~A~~La~~G--~~V~LlEk~d~~~GtS~ 58 (561)
T 3da1_A 19 LDLLVIGGGITGAGIALDAQVRG--IQTGLVEMNDFASGTSS 58 (561)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTT--CCEEEEESSSTTCSGGG
T ss_pred CCEEEECCCHHHHHHHHHHHhCC--CcEEEEECCCCCCCccc
Confidence 57899999999999999999999 99999999876666543
No 395
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=91.03 E-value=0.093 Score=61.85 Aligned_cols=39 Identities=21% Similarity=0.137 Sum_probs=33.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|+++-.+|+
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~~G--~~V~llE~~~~~~gt 41 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAGRG--LSVLMLEAQDLACAT 41 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTCSG
T ss_pred cCCEEEECcCHHHHHHHHHHHhCC--CCEEEEECCCCCCCc
Confidence 358899999999999999999999 999999997644443
No 396
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=91.00 E-value=0.16 Score=52.07 Aligned_cols=35 Identities=23% Similarity=0.358 Sum_probs=32.7
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
++.||+|+|||||.+|.-.+..|.+.|++|+++..
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 56899999999999999999999999999999965
No 397
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=90.93 E-value=0.2 Score=48.23 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=30.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
.++|+|+|+|.-|...|+.|.+ .|++|+++|++
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~--~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQ--RGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCCEEEEECC
Confidence 4689999999999999999999 56999999995
No 398
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=90.82 E-value=0.089 Score=60.13 Aligned_cols=34 Identities=18% Similarity=0.089 Sum_probs=31.2
Q ss_pred cCccccccCCchhhHHHHHHhh--CCCcceEEEcccCC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEA--GNGFTCTTFEQADN 775 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~--g~~~~v~v~E~~~~ 775 (1129)
.+++|||+|.+|+++|..|.+. | .+|+|+|+...
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG--~~V~vlE~~~~ 72 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPG--RSLLLVEEGGL 72 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTT--SCEEEECSSCS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCC--CeEEEEeCCCC
Confidence 4789999999999999999999 8 99999999753
No 399
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=90.80 E-value=0.093 Score=62.75 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=32.4
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..+|+|||+|++|+++|..|.+.| ++|+||||.+..+
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~~G--~~V~VlEr~~~~~ 85 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRAGG--VGALVLEKLVEPV 85 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHHTT--CCEEEEBSCSSCC
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CCEEEEcCCCCCC
Confidence 358999999999999999999999 9999999987653
No 400
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=90.75 E-value=0.09 Score=63.06 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=32.6
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADN 775 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~ 775 (1129)
...+++|||+|++|+++|..|.+.| ++|+|+|+.+.
T Consensus 22 ~~~DVvIVGgG~AGl~aA~~Lar~G--~~V~LiEr~~~ 57 (591)
T 3i3l_A 22 TRSKVAIIGGGPAGSVAGLTLHKLG--HDVTIYERSAF 57 (591)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTT--CEEEEECSSCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHcCC--CCEEEEcCCCC
Confidence 3468999999999999999999999 99999999753
No 401
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*
Probab=90.45 E-value=0.096 Score=58.78 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=31.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~ 774 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|++.
T Consensus 6 ~~dVvVIG~Gi~Gls~A~~La~~G--~~V~vle~~~ 39 (363)
T 1c0p_A 6 QKRVVVLGSGVIGLSSALILARKG--YSVHILARDL 39 (363)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESSC
T ss_pred CCCEEEECCCHHHHHHHHHHHhCC--CEEEEEeccC
Confidence 357899999999999999999999 9999999976
No 402
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=90.39 E-value=0.19 Score=53.11 Aligned_cols=35 Identities=23% Similarity=0.464 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
+++||+|+|||+|.+|.-.+..|.+.|++|+++..
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap 44 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP 44 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcC
Confidence 46799999999999999999999999999999965
No 403
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=90.34 E-value=0.21 Score=47.24 Aligned_cols=33 Identities=24% Similarity=0.380 Sum_probs=30.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|+|+|.-|...|+.|.+ .|++|+++|+++
T Consensus 7 ~~v~I~G~G~iG~~la~~L~~--~g~~V~~id~~~ 39 (141)
T 3llv_A 7 YEYIVIGSEAAGVGLVRELTA--AGKKVLAVDKSK 39 (141)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEEECCH
Confidence 689999999999999999999 569999999854
No 404
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=90.25 E-value=0.11 Score=60.61 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=32.0
Q ss_pred CccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGT 779 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~ 779 (1129)
+++|||+|++|+++|..|.+.| .+|+|+||. ..||.
T Consensus 1 DVvVIG~G~AGl~aA~~la~~G--~~V~viek~-~~~g~ 36 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRRAG--KKVTLISKR-IDGGS 36 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHHTT--CCEEEECSS-TTCSS
T ss_pred CEEEECCCHHHHHHHHHHHHCC--CCEEEEeCC-CCCch
Confidence 5789999999999999999999 999999998 55553
No 405
>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}
Probab=90.24 E-value=0.23 Score=55.51 Aligned_cols=35 Identities=26% Similarity=0.380 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
...+|+|||+|+.|+.+|+.|+. .|.+|+++|++.
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~ 223 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARR--LGAVVSATDVRP 223 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 35799999999999999999999 668999999865
No 406
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=90.13 E-value=0.11 Score=62.15 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=36.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
.+++|||+|++|+++|..|.+.| .+|+|+|+.+.+||...
T Consensus 127 ~~v~viG~G~aG~~aa~~~~~~g--~~v~~~e~~~~~~~~~~ 166 (572)
T 1d4d_A 127 TDVVIIGSGGAGLAAAVSARDAG--AKVILLEKEPIPGGNTK 166 (572)
T ss_dssp CSEEEECCSHHHHHHHHHHHSSS--CCEEEECSSSSSCTTGG
T ss_pred CCEEEECCCHHHHHHHHHHHHCC--CcEEEEecCCCCCcchh
Confidence 47899999999999999999999 99999999998888654
No 407
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=90.02 E-value=0.096 Score=62.88 Aligned_cols=37 Identities=19% Similarity=0.321 Sum_probs=33.3
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+||....|
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~~G--~~V~vlEK~~~~~ 43 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQSG--QTCALLSKVFPTR 43 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGGG
T ss_pred cCCEEEECcCHHHHHHHHHHHHCC--CcEEEEecCCCCC
Confidence 357899999999999999999999 9999999987664
No 408
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=89.56 E-value=0.17 Score=58.27 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=30.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||.|.+|+++|+.|++ .|++|+++|.+.
T Consensus 5 ~~~v~viG~G~~G~~~a~~l~~--~G~~v~~~D~~~ 38 (439)
T 2x5o_A 5 GKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRM 38 (439)
T ss_dssp TCCEEEECCHHHHHHHHHHHHT--TTCCCEEEESSS
T ss_pred CCEEEEEeecHHHHHHHHHHHh--CCCEEEEEECCC
Confidence 4789999999999999999999 679999999865
No 409
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=89.55 E-value=0.12 Score=61.39 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=32.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
..+++|||+|.+|+++|..|.+ | .+|+|+||.+..||
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~-G--~~V~vlEk~~~~~g 44 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD-Q--HQVIVLSKGPVTEG 44 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT-T--SCEEEECSSCTTC-
T ss_pred CCCEEEECccHHHHHHHHHHhc-C--CcEEEEECCCCCCC
Confidence 3588999999999999999999 8 99999999887665
No 410
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=89.35 E-value=0.12 Score=61.67 Aligned_cols=40 Identities=18% Similarity=0.234 Sum_probs=34.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccC-CcCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQAD-NIGGTW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~-~~GG~w 780 (1129)
..+++|||+|++|+.+|..|.+.| .+|+|+|++. .+|+.+
T Consensus 21 ~yDVIVIGgG~AGl~AAlaLAr~G--~kVlLIEk~~~~iG~~~ 61 (641)
T 3cp8_A 21 MYDVIVVGAGHAGCEAALAVARGG--LHCLLITSDLSAVARMS 61 (641)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESCGGGTTCCS
T ss_pred cCCEEEECccHHHHHHHHHHHHCC--CcEEEEEecccccCCCc
Confidence 358899999999999999999999 9999999975 466543
No 411
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=89.33 E-value=0.13 Score=61.98 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=34.4
Q ss_pred eeccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCc
Q psy12350 737 IKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778 (1129)
Q Consensus 737 ~~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG 778 (1129)
....+++|||+|.+|+++|..|.+.| .+|+|+||....||
T Consensus 16 ~~~~DVvVVG~G~AGl~AAl~aa~~G--~~V~vlEK~~~~~g 55 (621)
T 2h88_A 16 DHEFDAVVVGAGGAGLRAAFGLSEAG--FNTACVTKLFPTRS 55 (621)
T ss_dssp EEEEEEEEECCSHHHHHHHHHHHHTT--CCEEEEESSCGGGS
T ss_pred cccCCEEEECccHHHHHHHHHHHHCC--CcEEEEeccCCCCC
Confidence 34458899999999999999999999 99999999765443
No 412
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=89.30 E-value=0.15 Score=60.98 Aligned_cols=40 Identities=18% Similarity=0.126 Sum_probs=34.9
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w 780 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+|+++-.+|+-
T Consensus 32 ~~DVvVIGgGi~G~~~A~~La~rG--~~V~LlE~~~~~~GtS 71 (571)
T 2rgh_A 32 ELDLLIIGGGITGAGVAVQAAASG--IKTGLIEMQDFAEGTS 71 (571)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSTTCSGG
T ss_pred CCCEEEECcCHHHHHHHHHHHHCC--CcEEEEeCCCCCCCcc
Confidence 358899999999999999999999 9999999987555543
No 413
>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*
Probab=89.26 E-value=0.32 Score=52.32 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|..+++ .|++|+++|++.
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~~ 37 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDINT 37 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 3689999999999999999999 679999999854
No 414
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=89.26 E-value=0.12 Score=62.71 Aligned_cols=36 Identities=22% Similarity=0.310 Sum_probs=32.6
Q ss_pred cCccccccCCchhhHHHHHHh-hCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE-AGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~-~g~~~~v~v~E~~~~~G 777 (1129)
-+|+|||+|++|+++|..|.+ .| ++|+|+||.+..+
T Consensus 33 ~dVlIVGaGpaGL~~A~~La~~~G--~~V~viEr~~~~~ 69 (639)
T 2dkh_A 33 VDVLIVGCGPAGLTLAAQLAAFPD--IRTCIVEQKEGPM 69 (639)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCTT--SCEEEECSSSSCC
T ss_pred CcEEEECcCHHHHHHHHHHHHhCC--CCEEEEeCCCCCC
Confidence 478999999999999999999 89 9999999987654
No 415
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=89.02 E-value=0.18 Score=55.89 Aligned_cols=36 Identities=22% Similarity=0.083 Sum_probs=32.4
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
-+++|||+|++|+.+|..+.+.| .+|+|+|+++..+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~~G--~~V~liE~~~~~~ 37 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLRLG--VPVRLFEMRPKRM 37 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTT--CCEEEECCTTTSC
T ss_pred CCEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCcC
Confidence 36899999999999999999999 9999999987544
No 416
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=89.00 E-value=0.13 Score=59.67 Aligned_cols=39 Identities=18% Similarity=0.085 Sum_probs=32.9
Q ss_pred eccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
...+++|||+|.+|+++|..|.+.|+ .+|+|+|++..+|
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~~G~-~~V~vlE~~~~~~ 60 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKVWSG-GSVLVVDAGHAPG 60 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHHHHC-SCEEEEESSSSTT
T ss_pred CcCCEEEECcCHHHHHHHHHHHhCCC-CcEEEEccCCCCC
Confidence 34578999999999999999999984 6999999944443
No 417
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=88.79 E-value=0.15 Score=61.23 Aligned_cols=38 Identities=13% Similarity=0.095 Sum_probs=33.7
Q ss_pred cCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIG 777 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~G 777 (1129)
.+++|||+|.+|+++|..|.+.|++.+|+|+||....+
T Consensus 6 ~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~ 43 (602)
T 1kf6_A 6 ADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR 43 (602)
T ss_dssp CSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGG
T ss_pred CCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCC
Confidence 58899999999999999999988768999999986543
No 418
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=88.79 E-value=0.11 Score=61.45 Aligned_cols=33 Identities=15% Similarity=0.209 Sum_probs=29.3
Q ss_pred cCccccccCCchhhHHHHHHh---hCCCcceEEEcccC
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQAD 774 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~ 774 (1129)
.+|+|||+|++|+++|..|.+ .| .+|+|+|+.+
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G--~~V~lvE~~~ 38 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDR--IDVTLVESGN 38 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGG--SEEEEEEC--
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCC--CEEEEEecCC
Confidence 478999999999999999999 88 9999999965
No 419
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=88.78 E-value=0.26 Score=50.45 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=32.6
Q ss_pred CCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEE
Q psy12350 528 PFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLR 562 (1129)
Q Consensus 528 ~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r 562 (1129)
+++||+|+|||+|.+|...+..|.+.+++|+++..
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap 62 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAP 62 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECS
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECC
Confidence 58899999999999999999999999999998765
No 420
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=88.55 E-value=0.15 Score=61.88 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=32.8
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+++|||+|.+|+++|..|.+.| .+|+|+||....
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae~G--~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQKG--LSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHTTT--CCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHHCC--CcEEEEeccCCC
Confidence 358999999999999999999999 999999998755
No 421
>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}
Probab=88.53 E-value=0.27 Score=54.52 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=31.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+..+|+|||+|..|+.+|+.|+. .|.+|+++|++.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKR--LGAKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 45799999999999999999999 568999999864
No 422
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=88.11 E-value=0.17 Score=60.42 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=30.8
Q ss_pred ccCccccccCCchhhHHHHHHh---hCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~ 774 (1129)
..+|+|||+|++|+++|..|.+ .| .+|+|+|+.+
T Consensus 25 ~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~ 61 (550)
T 2e4g_A 25 IDKILIVGGGTAGWMAASYLGKALQGT--ADITLLQAPD 61 (550)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTTS--SEEEEEECCC
T ss_pred CCcEEEECCCHHHHHHHHHHHhhcCCC--CcEEEEeCCC
Confidence 4578999999999999999999 77 9999999964
No 423
>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1
Probab=88.09 E-value=0.37 Score=50.99 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=33.9
Q ss_pred CCCCCCeEEEEccCcchhhhHHHhhcccCeEEEEEEe
Q psy12350 527 EPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRF 563 (1129)
Q Consensus 527 ~~~~~k~v~ViG~g~sa~~~~~~l~~~~~~v~~~~r~ 563 (1129)
.+++||+|+|||+|.+|.-.+..|.+.+++|+++...
T Consensus 9 ~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~ 45 (274)
T 1kyq_A 9 HQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPD 45 (274)
T ss_dssp ECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEE
T ss_pred EEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3678999999999999999999999999999998764
No 424
>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}
Probab=87.92 E-value=0.36 Score=56.15 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=31.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|+..|..|++.|.+++|+++|++.
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 469999999999999999999965579999999853
No 425
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Probab=87.88 E-value=0.18 Score=61.38 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=31.6
Q ss_pred cCccccccCCchhhHHHHHHh-----hCCCcceEEEcccCCc
Q psy12350 740 CPNIVDRHGPGGLTATKRLTE-----AGNGFTCTTFEQADNI 776 (1129)
Q Consensus 740 g~~~iiG~G~~gl~~a~~l~~-----~g~~~~v~v~E~~~~~ 776 (1129)
-+|+|||+|++|+++|..|.+ .| ++|+|+||.+..
T Consensus 9 ~dVlIVGaGpaGL~lA~~La~~~~~~~G--i~v~viE~~~~~ 48 (665)
T 1pn0_A 9 CDVLIVGAGPAGLMAARVLSEYVRQKPD--LKVRIIDKRSTK 48 (665)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHSTT--CCEEEECSSSSC
T ss_pred CcEEEECcCHHHHHHHHHHhccccccCC--CCEEEEeCCCCC
Confidence 478999999999999999999 89 999999997643
No 426
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=87.65 E-value=0.18 Score=59.95 Aligned_cols=34 Identities=21% Similarity=0.195 Sum_probs=30.8
Q ss_pred ccCccccccCCchhhHHHHHHh---hCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTE---AGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~---~g~~~~v~v~E~~~ 774 (1129)
..+++|||+|++|+++|..|.+ .| ++|+|+|+..
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G--~~V~liE~~~ 41 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQ--ANITLIESAA 41 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSS--CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCC--CEEEEECCCC
Confidence 3578999999999999999999 88 9999999954
No 427
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=87.61 E-value=0.33 Score=48.20 Aligned_cols=34 Identities=21% Similarity=0.234 Sum_probs=30.3
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCC-CceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGS-GFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~-~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|+.|.+ . |++|+++|++.
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~~ 73 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIRE 73 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESCH
T ss_pred CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECCH
Confidence 4689999999999999999999 5 68999999854
No 428
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=87.59 E-value=0.35 Score=45.57 Aligned_cols=33 Identities=24% Similarity=0.305 Sum_probs=29.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|+|+|.-|...|+.|.+ .|++|+++|++.
T Consensus 7 ~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~~ 39 (144)
T 2hmt_A 7 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDINE 39 (144)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--TTCCCEEEESCH
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 579999999999999999999 558999999843
No 429
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*
Probab=87.32 E-value=0.16 Score=61.48 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=32.1
Q ss_pred CccccccCCchhhHHHHHHhhCC------CcceEEEcccC-Cc
Q psy12350 741 PNIVDRHGPGGLTATKRLTEAGN------GFTCTTFEQAD-NI 776 (1129)
Q Consensus 741 ~~~iiG~G~~gl~~a~~l~~~g~------~~~v~v~E~~~-~~ 776 (1129)
.++|||+|.+||++|..|.+.|. .++|+|||+++ .+
T Consensus 58 ~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 58 RIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBG
T ss_pred eEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCccc
Confidence 57899999999999999998772 27899999999 99
No 430
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=87.30 E-value=0.25 Score=62.20 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=34.6
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCc-ceEEEcccCCc---Ccccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGF-TCTTFEQADNI---GGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~-~v~v~E~~~~~---GG~w~ 781 (1129)
..+++|||+|.+|+++|.+|.+.| . +|+|+|++... |++|.
T Consensus 4 ~~dVvIIGgGi~Gls~A~~La~~G--~~~V~vlE~~~~~~~~gss~~ 48 (830)
T 1pj5_A 4 TPRIVIIGAGIVGTNLADELVTRG--WNNITVLDQGPLNMPGGSTSH 48 (830)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTT--CCCEEEECSSCTTCCCSGGGT
T ss_pred CCCEEEECcCHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCccccee
Confidence 357899999999999999999999 7 89999998752 44554
No 431
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=87.00 E-value=0.36 Score=49.56 Aligned_cols=33 Identities=9% Similarity=0.288 Sum_probs=29.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+|+|||+|.-|...|+.|.+ .|++|+++|++.
T Consensus 1 M~iiIiG~G~~G~~la~~L~~--~g~~v~vid~~~ 33 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLS--RKYGVVIINKDR 33 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHH--TTCCEEEEESCH
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 479999999999999999999 569999999854
No 432
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6
Probab=86.89 E-value=0.45 Score=53.06 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=30.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|..|++ .|++|++++++.
T Consensus 4 ~mki~iiG~G~~G~~~a~~L~~--~g~~V~~~~r~~ 37 (359)
T 1bg6_A 4 SKTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDIDA 37 (359)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred cCeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 3699999999999999999999 568999999843
No 433
>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}
Probab=86.73 E-value=0.42 Score=52.75 Aligned_cols=34 Identities=32% Similarity=0.537 Sum_probs=30.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQT 43 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~ 43 (1129)
...+|+|+|||.||+.+|+.|... |. +|+++|+.
T Consensus 187 ~d~kVVi~GAGaAG~~iA~ll~~~--Ga~~I~v~D~~ 221 (398)
T 2a9f_A 187 DEVSIVVNGGGSAGLSITRKLLAA--GATKVTVVDKF 221 (398)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHH--TCCEEEEEETT
T ss_pred CccEEEEECCCHHHHHHHHHHHHc--CCCeEEEEECC
Confidence 457999999999999999999995 46 99999995
No 434
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Probab=86.63 E-value=0.49 Score=51.78 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=29.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
.++|+|||||.-|.+.|..|++ .++ +|+++|++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~--~g~~~V~l~D~~~ 38 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGK--DNLADVVLFDIAE 38 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCCc
Confidence 4799999999999999999998 456 899999854
No 435
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=86.60 E-value=0.18 Score=59.76 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=30.6
Q ss_pred ccCccccccCCchhhHHHHHHh------------hCCCcceEEEcccC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTE------------AGNGFTCTTFEQAD 774 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~------------~g~~~~v~v~E~~~ 774 (1129)
.-+|+|||+|++|+++|..|.+ .| ++|+|+|+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G--~~V~liE~~~ 52 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPK--LNITLIESPD 52 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCS--CEEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCC--CeEEEEeCCC
Confidence 3478999999999999999999 78 9999999865
No 436
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Probab=86.33 E-value=0.6 Score=50.82 Aligned_cols=35 Identities=29% Similarity=0.374 Sum_probs=30.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||||..|.+.|..|++.+.+++|+++|++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~ 35 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVE 35 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 48999999999999999999865579999999954
No 437
>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}
Probab=86.32 E-value=0.37 Score=45.67 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=29.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|..|...|+.|++ .|++|+++++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~--~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSY--PQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCT--TTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCCH
Confidence 4799999999999999999998 567899999843
No 438
>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*
Probab=86.16 E-value=0.52 Score=53.28 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=30.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|+|||+|.+|+.+|+.|+. .|.+|+++|++.
T Consensus 172 g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~v~D~~~ 205 (401)
T 1x13_A 172 PAKVMVIGAGVAGLAAIGAANS--LGAIVRAFDTRP 205 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCG
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 4799999999999999999999 568999999854
No 439
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Probab=85.71 E-value=0.69 Score=50.58 Aligned_cols=34 Identities=15% Similarity=0.264 Sum_probs=29.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
.++|+|||||..|...|..|+.. ++ +|+++|.+.
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~~--g~~~v~L~Di~~ 38 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQK--NLGDVVLFDIVK 38 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCH
Confidence 46999999999999999999994 45 799999854
No 440
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=85.66 E-value=0.33 Score=58.86 Aligned_cols=37 Identities=11% Similarity=-0.065 Sum_probs=32.6
Q ss_pred ccCccccccCCchhhHHHHHHhh------CCCcceEEEcccCCcC
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEA------GNGFTCTTFEQADNIG 777 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~------g~~~~v~v~E~~~~~G 777 (1129)
..+++|||+|.+|+++|..|.+. | .+|+|+||....+
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG--~~V~vleK~~~~~ 64 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPE--AKILLVDKASLER 64 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTT--CCEEEECSSCTTT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCC--CcEEEEEecCCCC
Confidence 46899999999999999999997 8 9999999976433
No 441
>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*
Probab=85.47 E-value=0.53 Score=51.91 Aligned_cols=34 Identities=24% Similarity=0.348 Sum_probs=30.2
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQT 43 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~ 43 (1129)
...+|+|+|||.+|..+|+.|...| . +|+++|+.
T Consensus 191 ~~~kVVv~GAGaAG~~iAkll~~~G--~~~I~v~Dr~ 225 (388)
T 1vl6_A 191 EEVKVVVNGIGAAGYNIVKFLLDLG--VKNVVAVDRK 225 (388)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHT--CCEEEEEETT
T ss_pred CCcEEEEECCCHHHHHHHHHHHhCC--CCeEEEEECC
Confidence 4579999999999999999999954 5 89999995
No 442
>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*
Probab=85.40 E-value=0.67 Score=52.19 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.8
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
...+|+|||+|..|+.+|+.++. .|.+|+++|++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 35799999999999999999999 567899999854
No 443
>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}
Probab=85.24 E-value=0.6 Score=50.47 Aligned_cols=34 Identities=29% Similarity=0.337 Sum_probs=30.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|.|||.|.-|...|+.|++ .|++|++++++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~--~G~~V~~~dr~~ 48 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTE--WPGGVTVYDIRI 48 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTT--STTCEEEECSST
T ss_pred CCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 4689999999999999999999 669999999865
No 444
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Probab=85.24 E-value=0.69 Score=50.78 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=29.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
+++|+|||||.-|.+.|..|++ .++ +|+++|++.
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~--~g~~~V~L~D~~~ 43 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVVK 43 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCh
Confidence 3699999999999999999998 446 899999854
No 445
>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}
Probab=85.19 E-value=0.7 Score=50.35 Aligned_cols=35 Identities=26% Similarity=0.467 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|.|||+|.-|...|+.|++ .|++|++++++.
T Consensus 20 ~m~~I~iIG~G~mG~~~A~~l~~--~G~~V~~~dr~~ 54 (310)
T 3doj_A 20 HMMEVGFLGLGIMGKAMSMNLLK--NGFKVTVWNRTL 54 (310)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred cCCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 34799999999999999999999 669999999854
No 446
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}
Probab=84.89 E-value=0.68 Score=50.71 Aligned_cols=33 Identities=33% Similarity=0.419 Sum_probs=29.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+|.-|.+.|..|++ .|++|++++|++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~~ 35 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAK--TGHCVSVVSRSD 35 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHH--TTCEEEEECSTT
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCh
Confidence 689999999999999999999 568999999843
No 447
>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A
Probab=84.75 E-value=0.62 Score=54.03 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=31.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|+..|..|++.|.|++|+++|++.
T Consensus 5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~ 40 (467)
T 2q3e_A 5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE 40 (467)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 368999999999999999999964479999999853
No 448
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=84.66 E-value=0.83 Score=46.47 Aligned_cols=35 Identities=20% Similarity=0.376 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccCC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN 45 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~~ 45 (1129)
.++|+|||+|.-|.+.|..|++ .|++|++++++..
T Consensus 19 ~~~I~iiG~G~mG~~la~~l~~--~g~~V~~~~~~~~ 53 (209)
T 2raf_A 19 GMEITIFGKGNMGQAIGHNFEI--AGHEVTYYGSKDQ 53 (209)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TTCEEEEECTTCC
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHH
Confidence 4789999999999999999999 5689999998653
No 449
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Probab=84.62 E-value=0.76 Score=49.40 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=29.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+|+|||+|.-|.+.|..|++ .|++|++++|+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~ 33 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCK--QGHEVQGWLRVP 33 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred CeEEEECcCHHHHHHHHHHHh--CCCCEEEEEcCc
Confidence 479999999999999999999 568999999855
No 450
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=84.53 E-value=0.44 Score=57.82 Aligned_cols=36 Identities=19% Similarity=0.157 Sum_probs=31.9
Q ss_pred eccCccccccCCchhhHHHHHH---h-hCCCcceEEEcccCC
Q psy12350 738 KVCPNIVDRHGPGGLTATKRLT---E-AGNGFTCTTFEQADN 775 (1129)
Q Consensus 738 ~~g~~~iiG~G~~gl~~a~~l~---~-~g~~~~v~v~E~~~~ 775 (1129)
...+++|||+|.+|+++|..|. + .| .+|+|+||...
T Consensus 21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G--~~V~vlEK~~~ 60 (643)
T 1jnr_A 21 VETDILIIGGGFSGCGAAYEAAYWAKLGG--LKVTLVEKAAV 60 (643)
T ss_dssp EECSEEEECCSHHHHHHHHHHHHHHTTTT--CCEEEECSSCT
T ss_pred ccCCEEEECcCHHHHHHHHHHhhhhhhCC--CeEEEEeCcCC
Confidence 4468999999999999999999 5 78 99999999864
No 451
>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}
Probab=84.44 E-value=0.64 Score=53.56 Aligned_cols=35 Identities=29% Similarity=0.528 Sum_probs=31.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCC-Cc-eEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGS-GF-TCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~-~~-~v~v~E~~~ 44 (1129)
+.++|+|||+|.-|+..|..|++ . |+ +|+++|++.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~--~~G~~~V~~~D~~~ 53 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFAD--APCFEKVLGFQRNS 53 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHH--STTCCEEEEECCCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCh
Confidence 45799999999999999999999 5 79 999999965
No 452
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*
Probab=84.36 E-value=0.74 Score=50.38 Aligned_cols=35 Identities=23% Similarity=0.276 Sum_probs=29.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc--eEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF--TCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~--~v~v~E~~~ 44 (1129)
+.++|+|||||.-|...|..|++ .++ +|+++|++.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~--~g~~~~V~l~d~~~ 42 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIAK 42 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSSH
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCCh
Confidence 34799999999999999999999 456 999999853
No 453
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}
Probab=84.08 E-value=0.75 Score=50.13 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=29.8
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+|.-|...|..|++ .|++|++++++.
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~ 36 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQ--GGNDVTLIDQWP 36 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CeEEEECcCHHHHHHHHHHHh--CCCcEEEEECCH
Confidence 589999999999999999999 568999999844
No 454
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}
Probab=83.96 E-value=0.71 Score=50.93 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=29.4
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
++|+|||+|.-|.+.|..|++ .|++|++++|+
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~--~g~~V~~~~r~ 35 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLAL--AGEAINVLARG 35 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHH--TTCCEEEECCH
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCEEEEEECh
Confidence 689999999999999999999 56899999984
No 455
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=83.86 E-value=0.69 Score=53.36 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..|+|+|+|+|--|...|+.|.+ .+++|+++|+++
T Consensus 2 ~~M~iiI~G~G~vG~~la~~L~~--~~~~v~vId~d~ 36 (461)
T 4g65_A 2 NAMKIIILGAGQVGGTLAENLVG--ENNDITIVDKDG 36 (461)
T ss_dssp CCEEEEEECCSHHHHHHHHHTCS--TTEEEEEEESCH
T ss_pred CcCEEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence 35899999999999999999999 569999999854
No 456
>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*
Probab=83.83 E-value=0.92 Score=49.18 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=30.0
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+|.-|...|..|++ .|++|+++|++.
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~--~G~~V~~~d~~~ 48 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTE 48 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 689999999999999999999 669999999854
No 457
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=83.70 E-value=0.82 Score=50.16 Aligned_cols=34 Identities=24% Similarity=0.301 Sum_probs=29.7
Q ss_pred cceEEEEcCChHHHH-HHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLT-ATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~-aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|.|||.|.+|++ +|+.|++ .|++|+++|+++
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~ 38 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKM 38 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred CcEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCC
Confidence 378999999999996 7888888 679999999854
No 458
>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A
Probab=83.64 E-value=1.1 Score=50.17 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=34.3
Q ss_pred CCCCCCCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 1 m~~~~~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
||...+.+.++|.|||+|.-|...|+.+++ .|++|++++..+
T Consensus 4 ~~~~~~~~~~~IlIlG~G~lg~~la~aa~~--lG~~viv~d~~~ 45 (377)
T 3orq_A 4 MNFNKLKFGATIGIIGGGQLGKMMAQSAQK--MGYKVVVLDPSE 45 (377)
T ss_dssp SSCCCCCTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCT
T ss_pred cccccCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECCC
Confidence 444434456899999999999999999999 679999998754
No 459
>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}
Probab=83.28 E-value=1 Score=48.89 Aligned_cols=35 Identities=23% Similarity=0.337 Sum_probs=31.1
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|.|||.|.-|...|+.|++ .|++|++++++.
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~--~G~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLK--QGKRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 45799999999999999999999 669999999854
No 460
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=83.07 E-value=0.7 Score=52.41 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=30.5
Q ss_pred CeEEEEcCCccHHHHHHHHHh-cC-CEEEEEecCC
Q psy12350 870 KQAVVVGSGQSGLDITLDIAT-TG-KQAVVVGSGQ 902 (1129)
Q Consensus 870 k~VvVVG~G~Sg~eiA~~la~-~~-~~V~vv~~~~ 902 (1129)
.+|+|||+|.+|+-+|..|++ .| .+|+++++..
T Consensus 22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~ 56 (405)
T 2gag_B 22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW 56 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 479999999999999999999 99 9999998754
No 461
>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A
Probab=82.86 E-value=0.94 Score=50.47 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=30.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|+|+|+|.+|+.++..|+. .|.+|++++++.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~--~Ga~V~v~dr~~ 200 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDINV 200 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 3799999999999999999999 557999999854
No 462
>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*
Probab=82.81 E-value=0.89 Score=52.69 Aligned_cols=34 Identities=21% Similarity=0.458 Sum_probs=30.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|+..|..|++ .|++|+++|++.
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~--~G~~V~~~d~~~ 41 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLAD--IGHDVFCLDVDQ 41 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CceEEEECcCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 5899999999999999999999 669999999853
No 463
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}
Probab=82.68 E-value=0.77 Score=50.06 Aligned_cols=32 Identities=31% Similarity=0.388 Sum_probs=28.7
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
++|+|||+|.-|.+.|..|++ .|++|++++|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQR--SGEDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHH--TSCCEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCeEEEEEcC
Confidence 689999999999999999999 56899999984
No 464
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}
Probab=82.45 E-value=1.1 Score=49.06 Aligned_cols=34 Identities=24% Similarity=0.349 Sum_probs=29.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~~ 44 (1129)
+++|+|||||.-|.+.|..|+. .++ +|+++|.+.
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~--~g~~~V~L~Di~~ 48 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQ--KDLGDVYMFDIIE 48 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSST
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCH
Confidence 3699999999999999999999 456 899999854
No 465
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=82.41 E-value=1 Score=43.13 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=30.8
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
..++|+|+|+|..|..++..|.+.|.+|+++.+.
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~ 35 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNL 35 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence 3578999999999999999999999999999873
No 466
>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}
Probab=82.39 E-value=1.1 Score=45.67 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=29.9
Q ss_pred ccCCCCCCCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 859 RDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 859 ~~~~~~~~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
+...+......++|.|||+|..|.-+|..|++.|.+|+++.+.
T Consensus 9 ~~~~~~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~ 51 (209)
T 2raf_A 9 HHHHENLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSK 51 (209)
T ss_dssp -----------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTT
T ss_pred cccccccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 3333444566889999999999999999999999999998764
No 467
>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}
Probab=82.22 E-value=1 Score=49.88 Aligned_cols=34 Identities=18% Similarity=0.293 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|.+.|..|++ .|++|+++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~--~G~~V~l~~r~~ 62 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLAR--KGQKVRLWSYES 62 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHT--TTCCEEEECSCH
T ss_pred CCeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 4799999999999999999999 669999999854
No 468
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A 3adp_A* 3f3s_A*
Probab=82.21 E-value=0.99 Score=49.18 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=30.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||+|.-|...|..|++ .|++|+++|+++
T Consensus 5 ~~~kI~vIGaG~MG~~iA~~la~--~G~~V~l~d~~~ 39 (319)
T 2dpo_A 5 AAGDVLIVGSGLVGRSWAMLFAS--GGFRVKLYDIEP 39 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHH--TTCCEEEECSCH
T ss_pred CCceEEEEeeCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 34789999999999999999999 679999999854
No 469
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=82.18 E-value=1 Score=49.96 Aligned_cols=37 Identities=27% Similarity=0.548 Sum_probs=31.0
Q ss_pred CCCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 6 ~~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
|+..++|.|||.|.-|...|+.|++ .|++|++++++.
T Consensus 19 Mm~~mkIgiIGlG~mG~~~A~~L~~--~G~~V~v~dr~~ 55 (358)
T 4e21_A 19 YFQSMQIGMIGLGRMGADMVRRLRK--GGHECVVYDLNV 55 (358)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred hhcCCEEEEECchHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 3445799999999999999999999 669999999854
No 470
>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}
Probab=82.13 E-value=1 Score=49.30 Aligned_cols=34 Identities=29% Similarity=0.582 Sum_probs=30.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|+.|++ .|++|++++++.
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~ 64 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCE--AGYALQVWNRTP 64 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHHh--CCCeEEEEcCCH
Confidence 4699999999999999999999 669999999854
No 471
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*
Probab=81.98 E-value=1.1 Score=48.99 Aligned_cols=35 Identities=17% Similarity=0.108 Sum_probs=29.8
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
++||+|||||..|.+.|..|+..+...+++++|.+
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~ 40 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD 40 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 47999999999999999999985544589999874
No 472
>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*
Probab=81.92 E-value=1 Score=48.74 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=29.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..+|+|||||.-|-.-|..++. .|++|+++|..+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~--~G~~V~l~D~~~ 39 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFAS--GGFRVKLYDIEP 39 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TTCCEEEECSCH
T ss_pred CCeEEEECCcHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 4689999999999999999999 679999999854
No 473
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=81.78 E-value=1 Score=51.90 Aligned_cols=35 Identities=14% Similarity=0.241 Sum_probs=32.6
Q ss_pred CCCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEec
Q psy12350 866 PFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGS 900 (1129)
Q Consensus 866 ~~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~ 900 (1129)
+++||+|+|||+|.+|.-.+..|.+.|++|+++..
T Consensus 9 ~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~ 43 (457)
T 1pjq_A 9 QLRDRDCLIVGGGDVAERKARLLLEAGARLTVNAL 43 (457)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcC
Confidence 46799999999999999999999999999999975
No 474
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}
Probab=81.71 E-value=1.4 Score=48.08 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=30.6
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.++|+|||+|..|.+.|..|+..+.. +++++|...
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~-~v~l~Di~~ 39 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLG-DVVLFDIAQ 39 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCc-eEEEEeCCh
Confidence 347999999999999999999985543 999999854
No 475
>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}
Probab=81.27 E-value=1.1 Score=51.53 Aligned_cols=33 Identities=27% Similarity=0.409 Sum_probs=30.3
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+|.-|+..|..|++ .|++|+++|++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~--~G~~V~~~D~~~ 35 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAE--LGANVRCIDTDR 35 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CEEEEECcCHHHHHHHHHHHh--cCCEEEEEECCH
Confidence 689999999999999999999 669999999854
No 476
>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}
Probab=81.25 E-value=1.5 Score=50.00 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=31.3
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||+|.-|...|..|++ .|++|+++|++.
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~--aG~~V~l~D~~~ 87 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGL--AGIETFLVVRNE 87 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECcH
Confidence 34799999999999999999999 679999999954
No 477
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=80.97 E-value=1.3 Score=39.82 Aligned_cols=34 Identities=24% Similarity=0.251 Sum_probs=30.2
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcC-CEEEEEecC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTG-KQAVVVGSG 901 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~-~~V~vv~~~ 901 (1129)
.+++|+|+|+|..|..++..|.+.| .+|+++.+.
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHD 38 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence 3579999999999999999999999 888888764
No 478
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Probab=80.86 E-value=1.4 Score=48.06 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=30.4
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+.+||+|||||.-|.+.|..|+..+.. +|+++|...
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~~~~~-~v~L~Di~~ 41 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGLKELG-DVVLFDIAE 41 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCC-EEEEECSSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHhCCCC-eEEEEeCCc
Confidence 347999999999999999999995432 999999854
No 479
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=80.73 E-value=1 Score=42.34 Aligned_cols=34 Identities=21% Similarity=0.482 Sum_probs=30.5
Q ss_pred CCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 868 ~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
..++|+|+|+|..|..+|..|.+.|.+|+++++.
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~ 38 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS 38 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence 3578999999999999999999999999999874
No 480
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}
Probab=80.67 E-value=1.4 Score=47.71 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.9
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEccc
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQT 43 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~ 43 (1129)
..++|+|||+|.-|.+.|..|+.. ++ +|+++|+.
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~--g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQK--ELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEecc
Confidence 357999999999999999999994 46 99999985
No 481
>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}
Probab=80.66 E-value=1.1 Score=48.36 Aligned_cols=34 Identities=32% Similarity=0.513 Sum_probs=30.1
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+++|+|||+|.-|...|..|.+ .|++|++++++.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~~ 37 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLK--EGVTVYAFDLME 37 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHH--TTCEEEEECSSH
T ss_pred CCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 4789999999999999999999 568999998843
No 482
>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}
Probab=80.64 E-value=1.3 Score=48.29 Aligned_cols=34 Identities=29% Similarity=0.406 Sum_probs=30.2
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|...|..|++ .|++|++++++.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~--~g~~V~~~~~~~ 63 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLK--MGHTVTVWNRTA 63 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSG
T ss_pred CCeEEEEcccHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 4789999999999999999999 568999999854
No 483
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}
Probab=80.62 E-value=1.2 Score=48.10 Aligned_cols=35 Identities=29% Similarity=0.388 Sum_probs=28.9
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+||+|||||..|.+.|..|+..|...+|+++|++.
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~ 35 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE 35 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 48999999999999999999944222899999843
No 484
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=80.51 E-value=0.76 Score=54.88 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=38.7
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCcCcccc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWL 781 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~GG~w~ 781 (1129)
..+++|+|+|..|-..|..|.+.| .+|.++||++++||.|.
T Consensus 8 ~~D~~i~GtGl~~~~~a~~~~~~g--~~vl~id~~~~~gg~~~ 48 (650)
T 1vg0_A 8 DFDVIVIGTGLPESIIAAACSRSG--QRVLHVDSRSYYGGNWA 48 (650)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHTT--CCEEEECSSSSSCGGGC
T ss_pred cCCEEEECCcHHHHHHHHHHHhCC--CEEEEEcCCCcccCccc
Confidence 458899999999999999999999 99999999999999987
No 485
>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}
Probab=80.51 E-value=1.3 Score=46.18 Aligned_cols=35 Identities=26% Similarity=0.347 Sum_probs=30.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|.|||+|.-|.+.|+.|++ .|++|++++|+.
T Consensus 18 ~~~kIgiIG~G~mG~alA~~L~~--~G~~V~~~~r~~ 52 (245)
T 3dtt_A 18 QGMKIAVLGTGTVGRTMAGALAD--LGHEVTIGTRDP 52 (245)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCh
Confidence 35899999999999999999999 569999999854
No 486
>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}
Probab=80.50 E-value=1.2 Score=47.73 Aligned_cols=33 Identities=27% Similarity=0.466 Sum_probs=30.1
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|.|||+|.-|...|+.|++ .|++|++++++.
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVK--AGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 689999999999999999999 669999999854
No 487
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9
Probab=80.47 E-value=1.4 Score=41.01 Aligned_cols=33 Identities=18% Similarity=0.478 Sum_probs=29.6
Q ss_pred CCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 869 GKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 869 gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
+++|+|+|+|..|..+|..|++.+.+|+++.+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 468999999999999999999999999998763
No 488
>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}
Probab=80.45 E-value=1.3 Score=48.00 Aligned_cols=34 Identities=21% Similarity=0.456 Sum_probs=30.7
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|.|||+|.-|...|+.|++ .|++|++++++.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~ 40 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLR--AGLSTWGADLNP 40 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCeEEEEECCH
Confidence 4799999999999999999999 669999999854
No 489
>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}
Probab=80.27 E-value=1.3 Score=49.46 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=30.4
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|..|+.+|+.|+. .|.+|++++++.
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~--~Ga~V~~~d~~~ 199 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALG--MGAQVTILDVNH 199 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 4799999999999999999999 568999999854
No 490
>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*
Probab=80.14 E-value=1.3 Score=49.51 Aligned_cols=35 Identities=26% Similarity=0.355 Sum_probs=30.7
Q ss_pred CcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 8 PTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 8 ~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
..++|+|||+|..|+.+|+.++. .|.+|+++|++.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~--~Ga~V~~~d~~~ 201 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANG--MGATVTVLDINI 201 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 35799999999999999999999 668999999843
No 491
>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}
Probab=80.10 E-value=1.6 Score=46.89 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=29.7
Q ss_pred ceEEEEcC-ChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGG-GAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGa-G~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||+ |--|.+.|+.|++ .|++|++++++.
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~--~g~~V~~~~r~~ 45 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHD--SAHHLAAIEIAP 45 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHH--SSSEEEEECCSH
T ss_pred CEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 59999999 9999999999999 568999999854
No 492
>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*
Probab=79.98 E-value=1.8 Score=48.81 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=31.6
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.+.++|+|||+|..|...|+.+++ .|++|++++...
T Consensus 12 ~~~k~IlIlG~G~~g~~la~aa~~--~G~~vi~~d~~~ 47 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMALAAKE--MGYKIAVLDPTK 47 (389)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESST
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEeCCC
Confidence 345799999999999999999999 679999998754
No 493
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Probab=79.74 E-value=1.5 Score=47.96 Aligned_cols=37 Identities=14% Similarity=0.128 Sum_probs=30.7
Q ss_pred CCcceEEEEcCChHHHHHHHHhhcCCCCceEEEEccc
Q psy12350 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT 43 (1129)
Q Consensus 7 ~~~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~ 43 (1129)
++.+||+|||||..|.+.|..|+..+...+++++|..
T Consensus 7 ~~~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~ 43 (326)
T 2zqz_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF 43 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence 3457999999999999999999885544489999874
No 494
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=79.73 E-value=1 Score=42.15 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=30.0
Q ss_pred CCCCeEEEEcCCccHHHHHHHHHhcCCEEEEEecC
Q psy12350 867 FAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSG 901 (1129)
Q Consensus 867 ~~gk~VvVVG~G~Sg~eiA~~la~~~~~V~vv~~~ 901 (1129)
+.+++|+|+|+|..|..++..|.+.|.+|+++.+.
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~ 38 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN 38 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45688999999999999999999999999888763
No 495
>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*
Probab=79.69 E-value=1.3 Score=49.36 Aligned_cols=32 Identities=19% Similarity=0.219 Sum_probs=29.2
Q ss_pred eEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 11 ~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
+|+|||+|.-|.+.|..|++ .|++|++++++.
T Consensus 17 kI~iIG~G~mG~~la~~L~~--~G~~V~~~~r~~ 48 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSK--KCREVCVWHMNE 48 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTT--TEEEEEEECSCH
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 89999999999999999998 669999999853
No 496
>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*
Probab=79.59 E-value=1.5 Score=48.98 Aligned_cols=33 Identities=18% Similarity=0.335 Sum_probs=30.2
Q ss_pred ceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 10 ~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++|+|||||..|..+|+.+++ .|++|+++|.++
T Consensus 2 K~I~ilGgg~~g~~~~~~Ak~--~G~~vv~vd~~~ 34 (363)
T 4ffl_A 2 KTICLVGGKLQGFEAAYLSKK--AGMKVVLVDKNP 34 (363)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCT
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCC
Confidence 689999999999999999999 679999998754
No 497
>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}
Probab=79.36 E-value=1.4 Score=48.41 Aligned_cols=34 Identities=21% Similarity=0.333 Sum_probs=30.6
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
.++|+|||+|.-|.+.|..|++ .|++|++++|+.
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~--~G~~V~~~~r~~ 47 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHE--NGEEVILWARRK 47 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSH
T ss_pred CCcEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCH
Confidence 5799999999999999999999 669999998843
No 498
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=79.06 E-value=0.76 Score=54.36 Aligned_cols=35 Identities=14% Similarity=0.219 Sum_probs=31.1
Q ss_pred ccCccccccCCchhhHHHHHHhhCCCcceEEEcccCCc
Q psy12350 739 VCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNI 776 (1129)
Q Consensus 739 ~g~~~iiG~G~~gl~~a~~l~~~g~~~~v~v~E~~~~~ 776 (1129)
..+++|||+|++|+.+|.+|.+ | .+|+|+|+....
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse-g--~~VlvLEaG~~~ 60 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE-K--YKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT-T--SCEEEECSSBCG
T ss_pred cccEEEECccHHHHHHHHHHhc-C--CcEEEEecCCCc
Confidence 3578999999999999999999 8 999999997654
No 499
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1
Probab=78.85 E-value=1.6 Score=47.61 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=29.9
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCceEEEEcccC
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTD 44 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~~v~v~E~~~ 44 (1129)
++||+|||||..|.+.|..|+..+..-+++++|.+.
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~ 42 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 42 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence 479999999999999999999955333899999853
No 500
>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}
Probab=78.84 E-value=1.2 Score=48.48 Aligned_cols=33 Identities=18% Similarity=0.438 Sum_probs=29.5
Q ss_pred cceEEEEcCChHHHHHHHHhhcCCCCc-eEEEEccc
Q psy12350 9 TLHIGVIGGGAGGLTATKRLTEPGSGF-TCTTFEQT 43 (1129)
Q Consensus 9 ~~~V~IIGaG~aGl~aA~~l~~~~~~~-~v~v~E~~ 43 (1129)
.++|.|||.|.-|...|+.|++ .|+ +|++++++
T Consensus 24 ~~~I~iIG~G~mG~~~A~~L~~--~G~~~V~~~dr~ 57 (312)
T 3qsg_A 24 AMKLGFIGFGEAASAIASGLRQ--AGAIDMAAYDAA 57 (312)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--HSCCEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHH--CCCCeEEEEcCC
Confidence 4799999999999999999999 568 99999984
Done!