RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12350
(1129 letters)
>gnl|CDD|215116 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 119 bits (299), Expect = 3e-28
Identities = 112/402 (27%), Positives = 170/402 (42%), Gaps = 75/402 (18%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLP-----VHSSMYKS 802
G GL A + L G+ T FE+ +GG W+YT D L VHSS+Y+S
Sbjct: 19 GAAGLVAARELRREGH--TVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYES 76
Query: 803 LKTNLPKDLMELCGY-----GHKGNAD-KSYIGAKDVLENYNHPIYPEFKGKDMCQIPIL 856
L+TNLP++ M + + D + Y ++VL Y EFK ++M +
Sbjct: 77 LRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLA-YLQDFAREFKIEEMVRFETE 135
Query: 857 HSRDYRTPEPFAGK-----------------QAVVVGSGQ---------SGLDITLDIAT 890
R EP GK AVVV +G G+ +
Sbjct: 136 VVR----VEPVDGKWRVQSKNSGGFSKDEIFDAVVVCNGHYTEPNVAHIPGIK-----SW 186
Query: 891 TGKQ----------------AVVVGSGQSGLDITLDIATRASTVFL-SHHSERVTSLCLP 933
GKQ VV+G+ SG DI+ DIA A V + S SE T LP
Sbjct: 187 PGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLP 246
Query: 934 ---NNVVLKPDVAELTPTG-VRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNV 989
NN+ + ++ G + F++G D I+ CTGY H+PFL + +++ V
Sbjct: 247 VPQNNLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRV 306
Query: 990 QPLYKHTINIE-HPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQ 1048
+PLYKH P + +G+P + F +F++Q + ++ G +TLPS+++M+ D
Sbjct: 307 EPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMEDINA 366
Query: 1049 EVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPPV 1090
+ G H +G +LN I +E P V
Sbjct: 367 WYASLEALGIPKRYTHKLGKIQSEYLNWIA----EECGCPLV 404
Score = 84.9 bits (210), Expect = 5e-17
Identities = 46/122 (37%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLP---- 64
+ H+ VIG GA GL A + L G T FE+ VGG WVYT ++ D L
Sbjct: 10 SQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRS 67
Query: 65 -VHSSMYKSLKTNLPKEIMELSGYHHKGHPD------KSYIAANDVLEYLNDFADNFNLR 117
VHSS+Y+SL+TNLP+E M + D + Y + +VL YL DFA F +
Sbjct: 68 IVHSSVYESLRTNLPRECMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIE 127
Query: 118 NL 119
+
Sbjct: 128 EM 129
Score = 79.5 bits (196), Expect = 3e-15
Identities = 50/138 (36%), Positives = 73/138 (52%), Gaps = 9/138 (6%)
Query: 599 LHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFL-SHHSERVTSLCLP---N 654
+HS +YR P+PF + VV+G+ SG DI+ DIA A V + S SE T LP N
Sbjct: 191 IHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQN 250
Query: 655 NVVLKPDVAELTPTG-VRFQDGSYEQVDIILCCTGYTNHYPFLHESCGIKVVNKNVQPLY 713
N+ + ++ G + F++G D I+ CTGY H+PFL + +++ V+PLY
Sbjct: 251 NLWMHSEIDTAHEDGSIVFKNGKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLY 310
Query: 714 KHTINIEHPTMFILGVSF 731
KH P G+SF
Sbjct: 311 KHVF----PPALAPGLSF 324
Score = 63.3 bits (154), Expect = 3e-10
Identities = 35/102 (34%), Positives = 55/102 (53%), Gaps = 5/102 (4%)
Query: 267 NGPSGLDITHDISTEATTVFL---SHHSEHVKKLRFP-NNVVKKPDIAELTPTG-VRFQD 321
N SG DI+ DI+ A V + + S+ +KL P NN+ +I G + F++
Sbjct: 212 NFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTAHEDGSIVFKN 271
Query: 322 GSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHL 363
G D I++CTGY Y +PFL + +++ V+PLYKH+
Sbjct: 272 GKVVYADTIVHCTGYKYHFPFLETNGYMRIDENRVEPLYKHV 313
Score = 53.3 bits (128), Expect = 4e-07
Identities = 30/105 (28%), Positives = 50/105 (47%), Gaps = 5/105 (4%)
Query: 124 KNVQPLYKHLINIE-HPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLAD 182
V+PLYKH+ P + IG+P + F +F++Q ++ ++ G VTLPS+ +M+ D
Sbjct: 304 NRVEPLYKHVFPPALAPGLSFIGLPAMGIQFVMFEIQSKWVAAVLSGRVTLPSEDKMMED 363
Query: 183 TEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPV 227
G H +G+ +YLN + +E P V
Sbjct: 364 INAWYASLEALGIPKRYTHKLGKIQSEYLN----WIAEECGCPLV 404
Score = 46.0 bits (109), Expect = 1e-04
Identities = 22/65 (33%), Positives = 34/65 (52%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDIST 552
++ + +Y+ P G +HSH YR P+PF + VV+G+ SG DI+ DI+
Sbjct: 166 VVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPDPFKNEVVVVIGNFASGADISRDIAK 225
Query: 553 EATTV 557
A V
Sbjct: 226 VAKEV 230
>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like. This family
includes FMO proteins, cyclohexanone mono-oxygenase and a
number of different mono-oxygenases.
Length = 532
Score = 99.1 bits (247), Expect = 2e-21
Identities = 71/252 (28%), Positives = 114/252 (45%), Gaps = 60/252 (23%)
Query: 845 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA--------- 895
FKG+ HSRDY+ PE F GK+ +V+G G SG DI ++++ T Q
Sbjct: 165 FKGQ------YFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGSW 218
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSH--------------------HS----------- 924
V+ G + + TR + FL + H
Sbjct: 219 VLSRVSDWGYPWDMLLTTRFCS-FLRNILPTRISNWLMERQLNKRFNHENYGLSPKNGKL 277
Query: 925 --ERVTSLCLPNNVV-----LKPDVAELTPTGVRFQDGSYEQ-VDIILCCTGYSNHYPFL 976
E + + LPN ++ +KP V E T T F+DG+ E+ +D+++ TGY+ +PFL
Sbjct: 278 AKEPIVNDELPNRILCGAVKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATGYTFSFPFL 337
Query: 977 HESCGIKVVNKNVQPLYKHTI--NIEHPTMFILG-VPRHTLLFNLFDLQVRLFQQLMQGH 1033
ES +KV + LYK+ N+E PT+ I+G + + +LQ R ++ +G
Sbjct: 338 EESL-VKVETNKIS-LYKYVFPPNLEKPTLAIIGLIQPLGSIIPTVELQARWAVRVFKGL 395
Query: 1034 ITLPSKEEMLAD 1045
LPS +M+ +
Sbjct: 396 CKLPSSSKMMEE 407
Score = 64.8 bits (158), Expect = 2e-10
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 5/76 (6%)
Query: 303 VVKKPDIAELTPTGVRFQDGSYEQ-VDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYK 361
V KP + E T T F+DG+ E+ +D++++ TGYT+ +PFL ES +KV + LYK
Sbjct: 296 VKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATGYTFSFPFLEESL-VKVETNKIS-LYK 353
Query: 362 HLI--NIEHPSMCIIG 375
++ N+E P++ IIG
Sbjct: 354 YVFPPNLEKPTLAIIG 369
Score = 63.7 bits (155), Expect = 3e-10
Identities = 39/108 (36%), Positives = 61/108 (56%), Gaps = 15/108 (13%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE--QTGRDQYGLPVHSSM 69
+ VIG G GL++ K E G TC FE++D++GG W +TE + GR +S+
Sbjct: 4 VAVIGAGVSGLSSIKCCLEEGLEPTC--FERSDDIGGLWRFTEHVEEGR--------ASI 53
Query: 70 YKSLKTNLPKEIMELSGY-HHKGHPDKSYIAANDVLEYLNDFADNFNL 116
YKS+ TN KE+ S + + +P+ ++ + LEYL FA +F+L
Sbjct: 54 YKSVVTNSSKEMSCFSDFPFPEDYPN--FMHNSKFLEYLRMFAKHFDL 99
Score = 61.4 bits (149), Expect = 2e-09
Identities = 34/85 (40%), Positives = 51/85 (60%), Gaps = 10/85 (11%)
Query: 652 LPNNVV-----LKPDVAELTPTGVRFQDGSYEQ-VDIILCCTGYTNHYPFLHESCGIKVV 705
LPN ++ +KP V E T T F+DG+ E+ +D+++ TGYT +PFL ES +KV
Sbjct: 287 LPNRILCGAVKVKPSVKEFTETSAIFEDGTVEEDIDVVIFATGYTFSFPFLEESL-VKVE 345
Query: 706 NKNVQPLYKHTI--NIEHPTMFILG 728
+ LYK+ N+E PT+ I+G
Sbjct: 346 TNKIS-LYKYVFPPNLEKPTLAIIG 369
Score = 56.0 bits (135), Expect = 8e-08
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 588 FKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLS 641
FKG+ HSRDY+ PE F GK+ +V+G G SG DI ++++ A+ VFLS
Sbjct: 165 FKGQ------YFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQVFLS 212
Score = 48.3 bits (115), Expect = 2e-05
Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 6/51 (11%)
Query: 507 FKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTV 557
FKG+ HS +Y+ PE F GKR +V+G G SG DI ++S A V
Sbjct: 165 FKGQ------YFHSRDYKHPEGFQGKRVLVIGLGNSGGDIAVELSRTAAQV 209
Score = 41.3 bits (97), Expect = 0.003
Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 8/65 (12%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL++ K E G TC FE++D+IGG W +TEH+ + G +S+YKS+ TN
Sbjct: 10 GVSGLSSIKCCLEEGLEPTC--FERSDDIGGLWRFTEHV---EEG---RASIYKSVVTNS 61
Query: 808 PKDLM 812
K++
Sbjct: 62 SKEMS 66
Score = 34.4 bits (79), Expect = 0.35
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 122 VNKNVQPLYKHLI--NIEHPSMCIIGI--PRDTVGFYLFDLQVRFFLQLMQGHVTLPSKA 177
V N LYK++ N+E P++ IIG+ P ++ +LQ R+ +++ +G LPS +
Sbjct: 344 VETNKISLYKYVFPPNLEKPTLAIIGLIQPLGSI-IPTVELQARWAVRVFKGLCKLPSSS 402
Query: 178 EMLAD 182
+M+ +
Sbjct: 403 KMMEE 407
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 79.4 bits (196), Expect = 3e-15
Identities = 47/202 (23%), Positives = 67/202 (33%), Gaps = 73/202 (36%)
Query: 748 GPGGLTATKRLTEAG-NGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTN 806
G GL A L +AG F FE+ D++GGTW Y Y L+ +
Sbjct: 17 GQSGLAAAYALKQAGVPDFVI--FEKRDDVGGTWRYN---------------RYPGLRLD 59
Query: 807 LPKDLMELCGYG----------------HKGNADKSYIGAKDVLEN-------------- 836
PK L+ K +K Y + N
Sbjct: 60 SPKWLLGFPFLPFRWDEAFAPFAEIKDYIKDYLEK-YGLRFQIRFNTRVEVADWDEDTKR 118
Query: 837 ------------------------YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQA 872
+ P P+F G D + ILHS D+ PE GK+
Sbjct: 119 WTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRV 178
Query: 873 VVVGSGQSGLDITLDIATTGKQ 894
+V+G+G S +DI ++A G
Sbjct: 179 LVIGAGASAVDIAPELAEVGAS 200
Score = 69.4 bits (170), Expect = 4e-12
Identities = 40/152 (26%), Positives = 63/152 (41%), Gaps = 22/152 (14%)
Query: 580 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVF 639
+ P P+F G D + ILHS D+ PE GK+ +V+G+G S +DI ++A ++V
Sbjct: 143 LSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVT 202
Query: 640 LSHHSERVTSLCLPNNVVLKPDVAEL-----TPTGVRFQDGSYEQVDIILCCTGYTNHYP 694
LS S LP ++ + L P G + G +D +L GY +P
Sbjct: 203 LSQRSP---PHILPKPLLGEEVGGRLALRRALPAGWALRRGRV--LDALLPGAGYLPAFP 257
Query: 695 F------------LHESCGIKVVNKNVQPLYK 714
L V +++ P Y
Sbjct: 258 APDKRVEALLRAALRFLVLDAGVREDLGPDYA 289
Score = 67.5 bits (165), Expect = 2e-11
Identities = 23/64 (35%), Positives = 36/64 (56%)
Query: 499 YSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVS 558
S P PDF G D + I+HS ++ PE GKR +V+G+G S +DI +++ +V+
Sbjct: 143 LSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVIGAGASAVDIAPELAEVGASVT 202
Query: 559 AYLR 562
R
Sbjct: 203 LSQR 206
Score = 48.6 bits (116), Expect = 1e-05
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 14 VIGGGAGGLTATKRLTEPG-SGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKS 72
+IG G GL A L + G F FE+ D+VGGTW Y Y
Sbjct: 13 IIGAGQSGLAAAYALKQAGVPDFVI--FEKRDDVGGTWRYN---------------RYPG 55
Query: 73 LKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLR 117
L+ + PK ++ + D+++ ++ +Y+ D+ + + LR
Sbjct: 56 LRLDSPKWLLGFPFLPFRW--DEAFAPFAEIKDYIKDYLEKYGLR 98
>gnl|CDD|234447 TIGR04046, MSMEG_0569_nitr, flavin-dependent oxidoreductase,
MSMEG_0569 family. Members of this protein family
belong to a conserved seven-gene biosynthetic cluster
found sparsely in Cyanobacteria, Proteobacteria, and
Actinobacteria. Distant homologies to characterized
proteins suggest that members are enzymes dependent on a
flavinoid cofactor.
Length = 400
Score = 46.2 bits (110), Expect = 6e-05
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 837 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA- 895
Y+ P+ P + + LHS +YR P+ +VVGSGQSG I D+ G++
Sbjct: 129 YHVPVIPPLAERLPADVLQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKVH 188
Query: 896 VVVGS 900
+ VGS
Sbjct: 189 LAVGS 193
Score = 43.1 bits (102), Expect = 7e-04
Identities = 21/62 (33%), Positives = 30/62 (48%)
Query: 580 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVF 639
Y+ P+ P + + LHS +YR P+ +VVGSGQSG I D+ V
Sbjct: 129 YHVPVIPPLAERLPADVLQLHSSEYRNPDQLPDGAVLVVGSGQSGCQIAEDLHLAGRKVH 188
Query: 640 LS 641
L+
Sbjct: 189 LA 190
Score = 39.2 bits (92), Expect = 0.010
Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 493 IISSRNYSNPVYPDFKGK---DVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHD 549
+I++ Y PV P + DV Q+ HS EYR P+ +VVGSG SG I D
Sbjct: 123 VIATGGYHVPVIPPLAERLPADVLQL---HSSEYRNPDQLPDGAVLVVGSGQSGCQIAED 179
Query: 550 ISTEATTV 557
+ V
Sbjct: 180 LHLAGRKV 187
>gnl|CDD|222125 pfam13434, K_oxygenase, L-lysine 6-monooxygenase (NADPH-requiring).
This is family of Rossmann fold oxidoreductases that
catalyzes the NADPH-dependent hydroxylation of lysine at
the N6 position, EC:1.14.13.59.
Length = 335
Score = 43.3 bits (103), Expect = 5e-04
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 598 ILHSRDY--RTPEPFAGKQAVVVGSGQSGLDITLDIATR 634
+ HS +Y R P AGK+ VVG GQS +I LD+ R
Sbjct: 169 VFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDLLRR 207
Score = 42.9 bits (102), Expect = 7e-04
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 855 ILHSRDY--RTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
+ HS +Y R P AGK+ VVG GQS +I LD+
Sbjct: 169 VFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDLLRRQPGY 211
Score = 42.9 bits (102), Expect = 7e-04
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Query: 517 IMHSHEY--RTPEPFAGKRAVVVGSGPSGLDITHDI 550
+ HS EY R P AGKR VVG G S +I D+
Sbjct: 169 VFHSSEYLLRKPRLLAGKRITVVGGGQSAAEIFLDL 204
Score = 33.6 bits (78), Expect = 0.59
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 891 TGKQAVVVGSGQSGLDITLDIATR 914
GK+ VVG GQS +I LD+ R
Sbjct: 184 AGKRITVVGGGQSAAEIFLDLLRR 207
>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system
oxidoreductase, YpdA family. Members of this protein
family, including YpdA from Bacillus subtilis, are
apparent oxidoreductases present only in species with an
active bacillithiol system. They have been suggested
actually to be thiol disulfide oxidoreductases (TDOR),
although the evidence is incomplete [Unknown function,
Enzymes of unknown specificity].
Length = 316
Score = 42.2 bits (100), Expect = 0.001
Identities = 42/179 (23%), Positives = 68/179 (37%), Gaps = 44/179 (24%)
Query: 580 YNHPIYPEFKGKDMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
Y+ P G+D+ P + H Y+ P+ G++ VVVG S +D L+
Sbjct: 124 YDIPNLLNVPGEDL---PKVSHY--YKEAHPYFGQKVVVVGGSNSAVDAALE-------- 170
Query: 639 FLSHHSERVTSLCLPNNVV------LKPD-----------------VAELTPTGVRFQDG 675
L VT + + V ++PD V E+T V +
Sbjct: 171 -LYRKGAEVTMVHRGDEVSSSVKYWVRPDIENRIKEGSIKAYFNSRVKEITEDSVTLETP 229
Query: 676 SYEQVDI----ILCCTGYTNHYPFLHESCGIKVVNKNVQPLY-KHTINIEHPTMFILGV 729
E I + TGY + FL ES G+++ P+Y T+ P +++ GV
Sbjct: 230 DGEVHTIPNDFVFALTGYRPDFEFL-ESLGVELDEDTGIPVYNPETMETNVPGLYLAGV 287
Score = 34.1 bits (79), Expect = 0.34
Identities = 42/189 (22%), Positives = 68/189 (35%), Gaps = 41/189 (21%)
Query: 837 YNHPIYPEFKGKDMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQA 895
Y+ P G+D+ P + H Y+ P+ G++ VVVG S +D L++ G +
Sbjct: 124 YDIPNLLNVPGEDL---PKVSHY--YKEAHPYFGQKVVVVGGSNSAVDAALELYRKGAEV 178
Query: 896 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPN----------NVVLKPDVAEL 945
+V G S V P+ V E+
Sbjct: 179 TMVHRGDE-------------------VSSSVKYWVRPDIENRIKEGSIKAYFNSRVKEI 219
Query: 946 TPTGVRFQDGSYEQVDI----ILCCTGYSNHYPFLHESCGIKVVNKNVQPLY-KHTINIE 1000
T V + E I + TGY + FL ES G+++ P+Y T+
Sbjct: 220 TEDSVTLETPDGEVHTIPNDFVFALTGYRPDFEFL-ESLGVELDEDTGIPVYNPETMETN 278
Query: 1001 HPTMFILGV 1009
P +++ GV
Sbjct: 279 VPGLYLAGV 287
Score = 31.0 bits (71), Expect = 3.7
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLD 545
I+++ Y P + G+D+ ++ SH Y+ P+ G++ VVVG S +D
Sbjct: 118 IVATGYYDIPNLLNVPGEDLPKV----SHYYKEAHPYFGQKVVVVGGSNSAVD 166
>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 41.5 bits (98), Expect = 0.002
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
I +IGGG GL+A RL + G T FE D VGG + T +
Sbjct: 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG-LLRTVKID 47
Score = 34.6 bits (80), Expect = 0.30
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG 787
G GL+A RL +AG T FE D +GG L T I
Sbjct: 9 GIAGLSAAYRLQKAGPDVEVTLFEADDRVGG-LLRTVKID 47
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 37.5 bits (88), Expect = 0.002
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVH 66
++G G GL A L + G E+ D +GG Y+E+ ++ H
Sbjct: 1 IVGAGLSGLVAAYLLAK--RGKDVLVLEKRDRIGG-NAYSERDPGYRHDYGAH 50
Score = 31.3 bits (72), Expect = 0.26
Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 3/40 (7%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG 787
G GL A L + G E+ D IGG Y+E
Sbjct: 5 GLSGLVAAYLLAKRG--KDVLVLEKRDRIGGNA-YSERDP 41
>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 40.7 bits (96), Expect = 0.004
Identities = 28/113 (24%), Positives = 39/113 (34%), Gaps = 17/113 (15%)
Query: 873 VVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCL 932
VVG G +G++I L + + GL + + AS L +V L L
Sbjct: 149 AVVGGGAAGVEIALALRRRLPKR--------GLRGQVTLIAGAS--LLPGFPAKVRRLVL 198
Query: 933 PN------NVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHES 979
V V + DG D IL TG + P+L ES
Sbjct: 199 RLLARRGIEVHEGAPVTRGPDGALILADGRTLPADAILWATG-ARAPPWLAES 250
Score = 36.1 bits (84), Expect = 0.094
Identities = 26/103 (25%), Positives = 33/103 (32%), Gaps = 20/103 (19%)
Query: 616 VVVGSGQSGLDITLDIATR-------------ASTVFLSHHSERVTSLCLPN------NV 656
VVG G +G++I L + R A L +V L L V
Sbjct: 149 AVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEV 208
Query: 657 VLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHES 699
V + DG D IL TG P+L ES
Sbjct: 209 HEGAPVTRGPDGALILADGRTLPADAILWATG-ARAPPWLAES 250
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 38.7 bits (91), Expect = 0.018
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
+ +IG G GLTA L + G+ T E VGG
Sbjct: 6 SVVIIGAGPAGLTAAYELLK--RGYPVTVLEADPVVGG 41
Score = 32.6 bits (75), Expect = 1.4
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778
GP GLTA L + G+ T E +GG
Sbjct: 13 GPAGLTAAYELLKR--GYPVTVLEADPVVGG 41
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 37.7 bits (88), Expect = 0.019
Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 837 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQ 894
++ P P F G D +H D GK V+G G + +D L++ GK
Sbjct: 137 FSVPKPPGFPGADA---EGVHLVDVLERIDLKGKTVAVIGGGHTAIDAALNLLDLGKD 191
Score = 36.9 bits (86), Expect = 0.028
Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 3/59 (5%)
Query: 580 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTV 638
++ P P F G D +H D GK V+G G + +D L++ V
Sbjct: 137 FSVPKPPGFPGADA---EGVHLVDVLERIDLKGKTVAVIGGGHTAIDAALNLLDLGKDV 192
Score = 33.8 bits (78), Expect = 0.32
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLD 545
+ ++ +S P P F G D + H + GK V+G G + +D
Sbjct: 131 VDATGAFSVPKPPGFPGADAEGV---HLVDVLERIDLKGKTVAVIGGGHTAID 180
Score = 32.3 bits (74), Expect = 1.0
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 17/109 (15%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTT---FEQTDNVGGTWVYTEQTGRDQYGLP-VHS-S 68
V+G GA G+ L + ++ GG W R Y +H S
Sbjct: 2 VVGAGAAGMAFADHLLD----LGDAPVIIVDRGAQPGGHW-------RKWYPFVRLHQPS 50
Query: 69 MYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLR 117
+ + + K + ++ YL D A + L
Sbjct: 51 FFYGDFGMPDLNALSIDTS-PKWDGKAELASGAEIAAYLEDLARRYGLP 98
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 38.3 bits (90), Expect = 0.024
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
I ++GGG GL A RL + G T FE D +GG
Sbjct: 1 KIAIVGGGIAGLAAAYRLAK--RGHEVTVFEADDQLGG 36
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 38.2 bits (89), Expect = 0.025
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 5/64 (7%)
Query: 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVH 66
P + VIG G GL A L +G T E+ D VGG E D +
Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLA--RAGLKVTVLEKNDRVGGRARTFE---LDGFRFDTG 55
Query: 67 SSMY 70
S Y
Sbjct: 56 PSWY 59
>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase. This enzyme
oxidizes protoporphyrinogen IX to protoporphyrin IX, a
precursor of heme and chlorophyll. Bacillus subtilis
HemY also has coproporphyrinogen III to coproporphyrin
III oxidase activity in a heterologous expression
system, although the role for this activity in vivo is
unclear. This protein is a flavoprotein and has a
beta-alpha-beta dinucleotide binding motif near the
amino end [Biosynthesis of cofactors, prosthetic
groups, and carriers, Heme, porphyrin, and cobalamin].
Length = 462
Score = 37.1 bits (86), Expect = 0.049
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 8 PTLHIGVIGGGAGGLTATKRLTE--PGSGFTCTTFEQTDNVGGTWVYT 53
H+ +IGGG GL A L + P T E +D VGG + T
Sbjct: 1 GKKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGG-KIQT 47
>gnl|CDD|225885 COG3349, COG3349, Uncharacterized conserved protein [Function
unknown].
Length = 485
Score = 37.0 bits (86), Expect = 0.050
Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG---TWVYTEQTGR-DQYGLPVH 66
+ + G G GL A L + +G+ T +E D +GG +W ++ G ++GL V
Sbjct: 2 RVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLGGKVASWRDSD--GNHVEHGLHVF 57
Query: 67 SSMYKSLKTNLPK 79
Y +L T L +
Sbjct: 58 FGCYYNLLTLLKE 70
Score = 32.4 bits (74), Expect = 1.5
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 16/70 (22%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG---TW-----LYTEHIGCDQYGLPVHSSM 799
G GL A L +A G+ T +E D +GG +W + EH GL V
Sbjct: 9 GLAGLAAAYELADA--GYDVTLYEARDRLGGKVASWRDSDGNHVEH------GLHVFFGC 60
Query: 800 YKSLKTNLPK 809
Y +L T L +
Sbjct: 61 YYNLLTLLKE 70
>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed.
Length = 451
Score = 36.8 bits (86), Expect = 0.070
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE 54
+ +IGGG GL+A RL + G T E +D +GG + T
Sbjct: 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGK-IQTV 44
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 36.0 bits (83), Expect = 0.13
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 16/81 (19%)
Query: 716 TINIEHPTMFILGVSFTI------EEFIKVCPN--------IVDRHGPGGLTATKRLTEA 761
T+ I + I + I E +++ P V GP GL A +L A
Sbjct: 106 TLGISEDPVGIKSIERIIIDKGFQEGWVQPRPPSKRTGKKVAVVGSGPAGLAAADQLNRA 165
Query: 762 GNGFTCTTFEQADNIGGTWLY 782
G+ T T FE+ D GG +Y
Sbjct: 166 GH--TVTVFEREDRCGGLLMY 184
Score = 35.2 bits (81), Expect = 0.19
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52
+ V+G G GL A +L +G T T FE+ D GG +Y
Sbjct: 146 VAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMY 184
Score = 32.9 bits (75), Expect = 1.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 524 RTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFD 564
R P GK+ VVGSGP+GL ++ TV+ + R D
Sbjct: 136 RPPSKRTGKKVAVVGSGPAGLAAADQLNRAGHTVTVFERED 176
>gnl|CDD|233987 TIGR02733, desat_CrtD, C-3',4' desaturase CrtD. Members of this
family are slr1293, a carotenoid biosynthesis protein
which was shown to be the C-3',4' desaturase (CrtD) of
myxoxanthophyll biosynthesis in Synechocystis sp.
strain PCC 6803, and close homologs (presumed to be
functionally equivalent) from other cyanobacteria,
where myxoxanthophyll biosynthesis is either known or
expected. This enzyme can act on neurosporene and so
presumably catalyzes the first step that is committed
to myxoxanthophyll [Biosynthesis of cofactors,
prosthetic groups, and carriers, Other].
Length = 492
Score = 35.8 bits (83), Expect = 0.13
Identities = 15/38 (39%), Positives = 18/38 (47%), Gaps = 2/38 (5%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
+ VIG G GLTA L + G+ T EQ GG
Sbjct: 3 SVVVIGAGIAGLTAAALLAK--RGYRVTLLEQHAQPGG 38
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted
to lycopene by desaturation at four (two symmetrical
pairs of) sites. This is achieved by two enzymes (crtP
and crtQ) in cyanobacteria (Gloeobacter being an
exception) and plants, but by a single enzyme in most
other bacteria and in fungi. This single enzyme is
called the bacterial-type phytoene desaturase, or CrtI.
Most members of this family, part of the larger Pfam
family pfam01593, which also contains amino oxidases,
are CrtI itself; it is likely that all members act on
either phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 35.3 bits (82), Expect = 0.21
Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-TWVYTEQ 55
VIG G GGL RL +G T EQ D GG V +
Sbjct: 1 AVVIGAGFGGLALAIRLA--AAGIPVTVVEQRDKPGGRAGVLEDD 43
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 34.6 bits (80), Expect = 0.31
Identities = 12/39 (30%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52
VIG G GL A E G E+ GG +
Sbjct: 4 VIGSGLAGLAAALEAAEA--GLKVAVVEKGQPFGGATAW 40
>gnl|CDD|224070 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 34.8 bits (80), Expect = 0.32
Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
Query: 839 HPIYPEFKGKDMCQIPILHSRDYRTPEPF---AGKQAVVVGSGQSGLDITLDIATTGKQA 895
H K KD+ ++ + +R E K +V+G G +G+ L++A G +
Sbjct: 91 HMDDATEKAKDLLRMAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELADMGFKV 150
Query: 896 VVV 898
+V
Sbjct: 151 YLV 153
Score = 29.7 bits (67), Expect = 9.5
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
Query: 582 HPIYPEFKGKDMCQIPILHSRDYRTPEPF---AGKQAVVVGSGQSGLDITLDIA 632
H K KD+ ++ + +R E K +V+G G +G+ L++A
Sbjct: 91 HMDDATEKAKDLLRMAVAKARKLEPLEEIKVEVSKSVLVIGGGVAGITAALELA 144
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 34.4 bits (79), Expect = 0.36
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 24/100 (24%)
Query: 12 IGVIGGGAGGLTATKRL-TEPGSG--FTCTTFEQTDNVGGTWVYTEQTGRDQY------- 61
I +IG G GLTA +L T + F T E D +GG + T + G ++
Sbjct: 8 IVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGR-INTSEFGGERIEMGATWI 66
Query: 62 ----GLPVHSSMYK--SLKTNLPKEIMELSGYHHKGHPDK 95
G PV+ + SL+++ P E M+ G PD+
Sbjct: 67 HGIGGSPVYKIAQEAGSLESDEPWECMD-------GFPDR 99
>gnl|CDD|215527 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 34.1 bits (78), Expect = 0.50
Identities = 18/45 (40%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQT 56
I V+G G GLTA + L GF+ T E +GG VYT+++
Sbjct: 696 IIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIGGR-VYTDRS 737
Score = 32.1 bits (73), Expect = 2.1
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Query: 743 IVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEH 785
IV GP GLTA + L GF+ T E IGG +YT+
Sbjct: 697 IVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIGGR-VYTDR 736
>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 33.9 bits (78), Expect = 0.53
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 9/71 (12%)
Query: 891 TGKQAVVVGSGQSGLDITLDIATRAS--TVFLSHHSE------RVTSLCLPNNVVLKPDV 942
GK+ V+GSG +GL D+A R TVF + H + LP +V ++
Sbjct: 430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIV-DVEI 488
Query: 943 AELTPTGVRFQ 953
L GV+F+
Sbjct: 489 ENLKKLGVKFE 499
Score = 33.2 bits (76), Expect = 0.88
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 9/70 (12%)
Query: 612 GKQAVVVGSGQSGLDITLDIATRAS--TVFLSHHSE------RVTSLCLPNNVVLKPDVA 663
GK+ V+GSG +GL D+A R TVF + H + LP +V ++
Sbjct: 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLKYGIPEFRLPKKIV-DVEIE 489
Query: 664 ELTPTGVRFQ 673
L GV+F+
Sbjct: 490 NLKKLGVKFE 499
>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 33.6 bits (78), Expect = 0.56
Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 20/73 (27%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMY 70
+ VIG G GLTA RL G+ T FE D GG + YG+P +
Sbjct: 142 KVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGG--LLR-------YGIPE----F 186
Query: 71 KSLKTNLPKEIME 83
+ LPK+I++
Sbjct: 187 R-----LPKDIVD 194
Score = 33.2 bits (77), Expect = 0.80
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 519 HSHEYRTPEPFAGKRAVVVGSGPSGLDITHD 549
P GK+ V+G+GP+GL H
Sbjct: 128 TGWVLFKRAPKTGKKVAVIGAGPAGLTAAHR 158
Score = 30.5 bits (70), Expect = 4.9
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 20/63 (31%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
GP GLTA RL G+ T FE D GG L +YG+P ++ L
Sbjct: 149 GPAGLTAAHRLARK--GYDVTIFEARDKAGG-LL--------RYGIPE----FR-----L 188
Query: 808 PKD 810
PKD
Sbjct: 189 PKD 191
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 33.4 bits (77), Expect = 0.71
Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 25/157 (15%)
Query: 823 ADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHS-RDYRTPE-PFAGKQAV-VVGSGQ 879
+ K VL P G++ + L+S ++YR E Q V VVG G
Sbjct: 94 QGNQWQYDKLVLATGASAFVPPIPGRE--LMLTLNSQQEYRAAETQLRDAQRVLVVGGGL 151
Query: 880 SGLDITLDIATTGKQAVVVGSGQSGLDITL--DIATRASTVFLSHHSER--VTSLCLPNN 935
G ++ +D+ GK +V + S L + ++++R L H V
Sbjct: 152 IGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSR-----LQHRLTEMGVH------- 199
Query: 936 VVLKPDVAELTPTG----VRFQDGSYEQVDIILCCTG 968
++LK + L T G +VD ++ G
Sbjct: 200 LLLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAG 236
>gnl|CDD|226482 COG3973, COG3973, Superfamily I DNA and RNA helicases [General
function prediction only].
Length = 747
Score = 33.7 bits (77), Expect = 0.73
Identities = 12/51 (23%), Positives = 21/51 (41%)
Query: 546 ITHDISTEATTVSAYLRFDNKTITKRKKFDKGRNYNHPIYPEFKGKDMCQI 596
+ H + EA S + DN+T+ +R +Y IY E + +
Sbjct: 529 LKHTVIDEAQDYSRFQFTDNRTLAERASMTIVGDYGQVIYDEAQELSPMER 579
>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 33.6 bits (77), Expect = 0.76
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 578 RNYNHPIYPEFKGKDMCQIPILHSRDYRTPEP-FAGKQAVVVGSGQSGLDITLDIATRAS 636
RN N P E++ K + P H P F GK+ V+G G SG++ +D+A
Sbjct: 326 RNMNVPGEDEYRNKGVAYCP--HCDG-----PLFKGKRVAVIGGGNSGVEAAIDLAGIVE 378
Query: 637 TVFL 640
V L
Sbjct: 379 HVTL 382
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 33.1 bits (76), Expect = 0.80
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 500 SNPVYPDFKGKDVCQIPIMH-SHEYRTPEPFAGKRAVVVGSGPSGLD 545
+ P P G +V + + S E KR VVVG G GL+
Sbjct: 111 ARPRIPGIPGVEVATLRGVIDSDEILELLELP-KRVVVVGGGYIGLE 156
Score = 31.9 bits (73), Expect = 1.4
Identities = 32/133 (24%), Positives = 49/133 (36%), Gaps = 5/133 (3%)
Query: 839 HPIYPEFKGKDMCQIP-ILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVV 897
P P G ++ + ++ S + + VVVG G GL++ +A GK+ V
Sbjct: 112 RPRIPGIPGVEVATLRGVIDSDEILELLELPKR-VVVVGGGYIGLELAAALAKLGKEVTV 170
Query: 898 VGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSY 957
V L D + A L VT L VV+ V + V+ DG
Sbjct: 171 VERRDRLLARADDEISAALLEKLEKLLLGVTVL---LVVVVVVKVGDGKVVEVKLGDGEE 227
Query: 958 EQVDIILCCTGYS 970
D++L G
Sbjct: 228 LDADVVLVAIGRR 240
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH [Amino acid
biosynthesis, Glutamate family].
Length = 449
Score = 33.3 bits (76), Expect = 0.87
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 527 EPFAGKRAVVVGSGPSGLDITHDISTEATTVSAY 560
P K+ V+G+GP+GL +++ +V+ +
Sbjct: 129 APSTHKKVAVIGAGPAGLACASELAKAGHSVTVF 162
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 33.0 bits (76), Expect = 0.94
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49
VIG G G A R + G E+ + +GGT
Sbjct: 9 VIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLGGT 42
Score = 30.6 bits (70), Expect = 5.1
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGC 788
GP G A R A G E+ + +GGT L ++GC
Sbjct: 13 GPAGYVAAIRA--AQLGLKVALVEKGERLGGTCL---NVGC 48
>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family. The
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P)-binding Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH), quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. Active site zinc has
a catalytic role, while structural zinc aids in
stability.
Length = 312
Score = 32.7 bits (75), Expect = 0.99
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 862 RTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATR--ASTVF 919
R AGK V+G+G GL A G + V+ L +A A+ V
Sbjct: 123 RRGWIRAGKTVAVIGAGFIGLLFLQLAAAAGARRVIA---IDRRPARLALARELGATEVV 179
Query: 920 LSHH---SERVTSL 930
ERV L
Sbjct: 180 TDDSEAIVERVREL 193
>gnl|CDD|204116 pfam09013, YopH_N, YopH, N-terminal. The N-terminal domain of YopH
is a compact structure composed of four alpha-helices
and two beta-hairpins. Helices alpha-1 and alpha-3 are
parallel to each other and antiparallel to helices
alpha-2 and alpha-4. This domain targets YopH for
secretion from the bacterium and translocation into
eukaryotic cells, and has phosphotyrosyl peptide-binding
activity, allowing for recognition of p130Cas and
paxillin.
Length = 121
Score = 31.1 bits (70), Expect = 1.0
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Query: 260 VRDPGAANGPS---GLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTG 316
+R AAN + GL IT E+ F EHVK N + + D+A+L P+
Sbjct: 25 LRGNVAANKETTFQGLTITSGA-RESEKAFAQEVLEHVK-----NTALNQEDVAKLLPST 78
Query: 317 VRFQDGSYE 325
V+ ++E
Sbjct: 79 VKHNLNNFE 87
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 32.5 bits (75), Expect = 1.1
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV-GGTW 50
++G G GLTA L + +G FE+ + GG W
Sbjct: 30 IVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGMW 65
Score = 31.7 bits (73), Expect = 2.1
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNI-GGTWL 781
GP GLTA L +A G FE+ + GG W
Sbjct: 34 GPSGLTAAYYLAKA--GLKVAVFERKLSFGGGMWG 66
>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 32.8 bits (76), Expect = 1.1
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 20/66 (30%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
GP GL A +L A G T FE+AD IGG L YG+P K L
Sbjct: 152 GPAGLAAADQLARA--GHKVTVFERADRIGG--LLR-------YGIP-------DFK--L 191
Query: 808 PKDLME 813
K++++
Sbjct: 192 EKEVID 197
Score = 30.1 bits (69), Expect = 7.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Query: 531 GKRAVVVGSGPSGL 544
GK+ VVGSGP+GL
Sbjct: 143 GKKVAVVGSGPAGL 156
>gnl|CDD|177909 PLN02268, PLN02268, probable polyamine oxidase.
Length = 435
Score = 32.7 bits (75), Expect = 1.3
Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 7/52 (13%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPV 65
VIGGG G+ A + L + + F T E D +GG V+T+ + +G PV
Sbjct: 5 VIGGGIAGIAAARALHD--ASFKVTLLESRDRIGGR-VHTDYS----FGFPV 49
>gnl|CDD|225617 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino
acid transport and metabolism].
Length = 421
Score = 32.4 bits (74), Expect = 1.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 873 VVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD 906
++G G +GL L + GK+ +V GQS L
Sbjct: 6 AIIGGGLAGLTCGLALQQAGKRCAIVNRGQSALH 39
>gnl|CDD|237381 PRK13419, PRK13419, F0F1 ATP synthase subunit A; Provisional.
Length = 342
Score = 32.0 bits (73), Expect = 1.9
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 131 KHLINIEHPSMCIIGIPRDTVGFYL--FDLQVRFFLQLMQGHVTLPS 175
HL H S+ II IP + +G + F L VR F + GH+ + S
Sbjct: 229 AHLTGGTHWSLWIIMIPIEFIGLFTKPFALTVRLFANMTAGHIVILS 275
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 32.1 bits (73), Expect = 2.0
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 16/130 (12%)
Query: 893 KQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLP--NNVV------------L 938
+A+VVG+G L++ ++ R L H S+++ L N + L
Sbjct: 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRL 208
Query: 939 KPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTIN 998
++ + V F+ G E D+I+ G + F+ ES IK+ +K P+
Sbjct: 209 NEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFI-ESSNIKLDDKGFIPV-NDKFE 266
Query: 999 IEHPTMFILG 1008
P ++ +G
Sbjct: 267 TNVPNIYAIG 276
Score = 31.7 bits (72), Expect = 2.4
Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 16/130 (12%)
Query: 613 KQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLP--NNVV------------L 658
+A+VVG+G L++ ++ R L H S+++ L N + L
Sbjct: 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRL 208
Query: 659 KPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHESCGIKVVNKNVQPLYKHTIN 718
++ + V F+ G E D+I+ G + F+ ES IK+ +K P+
Sbjct: 209 NEEIDAINGNEVTFKSGKVEHYDMIIEGVGTHPNSKFI-ESSNIKLDDKGFIPV-NDKFE 266
Query: 719 IEHPTMFILG 728
P ++ +G
Sbjct: 267 TNVPNIYAIG 276
>gnl|CDD|107379 cd06384, PBP1_NPR_B, Ligand-binding domain of type B natriuretic
peptide receptor. Ligand-binding domain of type B
natriuretic peptide receptor (NPR-B). NPR-B is one of
three known single membrane-spanning natriuretic peptide
receptors that have been identified. Natriuretic
peptides are family of structurally related but
genetically distinct hormones/paracrine factors that
regulate blood volume, blood pressure, ventricular
hypertrophy, pulmonary hypertension, fat metabolism, and
long bone growth. In mammals there are three natriuretic
peptides: ANP, BNP, and CNP. Like NPR-A (or GC-A), NPR-B
(or GC-B) is a transmembrane guanylyl cyclase, an enzyme
that catalyzes the synthesis of cGMP. NPR-B is the
predominant natriuretic peptide receptor in the brain.
The rank of order activation of NPR-B by natriuretic
peptides is CNP>>ANP>BNP. Homozygous inactivating
mutations in human NPR-B cause a form of short-limbed
dwarfism known as acromesomelic dysplasia type
Maroteaux.
Length = 399
Score = 31.7 bits (72), Expect = 2.2
Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 451 PGDTVVFY--MFDLQDKIRPGRGNPRPSACEADALPTNLTRLTYIISSRNYSNPVYPDFK 508
PGD V FY +F +++ R + + + + + ++I+ R NP Y +F+
Sbjct: 229 PGDYVFFYLDVFGESLRVKSPRESYKQMNHSSWTVLKEAFKSVFVITYREPENPEYKEFQ 288
Query: 509 GK 510
+
Sbjct: 289 RE 290
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 31.4 bits (72), Expect = 2.7
Identities = 13/34 (38%), Positives = 18/34 (52%)
Query: 873 VVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD 906
+V+G G +GL L A GK+ +V GQ L
Sbjct: 6 LVIGGGLAGLTAALAAAEAGKRVALVAKGQGALH 39
>gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate
dehydrogenase, subgroup 1. Amino acid dehydrogenase
(DH) is a widely distributed family of enzymes that
catalyzes the oxidative deamination of an amino acid to
its keto acid and ammonia with concomitant reduction of
NADP+. Glutamate DH is a multidomain enzyme that
catalyzes the reaction from glutamate to 2-oxyoglutarate
and ammonia in the presence of NAD or NADP. It is
present in all organisms. Enzymes involved in ammonia
assimilation are typically NADP+-dependent, while those
involved in glutamate catabolism are generally
NAD+-dependent. Amino acid DH-like NAD(P)-binding
domains are members of the Rossmann fold superfamily and
include glutamate, leucine, and phenylalanine DHs,
methylene tetrahydrofolate DH,
methylene-tetrahydromethanopterin DH,
methylene-tetrahydropholate DH/cyclohydrolase, Shikimate
DH-like proteins, malate oxidoreductases, and glutamyl
tRNA reductase. Amino acid DHs catalyze the deamination
of amino acids to keto acids with NAD(P)+ as a cofactor.
The NAD(P)-binding Rossmann fold superfamily includes a
wide variety of protein families including NAD(P)-
binding domains of alcohol DHs, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate DH,
lactate/malate DHs, formate/glycerate DHs, siroheme
synthases, 6-phosphogluconate DH, amino acid DHs,
repressor rex, NAD-binding potassium channel domain,
CoA-binding, and ornithine cyclodeaminase-like domains.
These domains have an alpha -beta-alpha configuration.
NAD binding involves numerous hydrogen and van der Waals
contacts.
Length = 227
Score = 31.0 bits (71), Expect = 2.8
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 819 HKGNADKSYIGAKDVLENYNHPIYPE 844
NAD+ I AK ++E N P PE
Sbjct: 120 TADNADR--IKAKIIVEAANGPTTPE 143
>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 31.4 bits (72), Expect = 2.8
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 526 PEPFAGKRAVVVGSGPSGL 544
P P GKR V+G GP+GL
Sbjct: 132 PAPDTGKRVAVIGGGPAGL 150
>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 31.9 bits (73), Expect = 2.9
Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 3 QDKTSPTLH----------IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGT 49
D+ H + VIG G GL A L +G T FE+ +N GG
Sbjct: 523 WDEYKQRWHKPAGIGSRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGV 577
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 31.6 bits (72), Expect = 3.1
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 610 FAGKQAVVVGSGQSGLDITLDIA--TRASTVF 639
F GK V+G G SG++ +D+A R TV
Sbjct: 350 FKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVL 381
Score = 31.2 bits (71), Expect = 4.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 867 FAGKQAVVVGSGQSGLDITLDIA 889
F GK V+G G SG++ +D+A
Sbjct: 350 FKGKDVAVIGGGNSGIEAAIDLA 372
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 31.1 bits (71), Expect = 3.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 873 VVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLD 906
+++G G +GL L +A GK+ ++ +GQS L
Sbjct: 4 IIIGGGLAGLSCALRLAEAGKKCAIIAAGQSALH 37
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 30.8 bits (70), Expect = 3.6
Identities = 14/35 (40%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNI-GGTWL 781
GP GLTA L A G FE+ + GG W
Sbjct: 39 GPSGLTAAYYL--AKAGLKVAIFERKLSFGGGIWG 71
Score = 30.0 bits (68), Expect = 6.8
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNV-GGTW 50
++G G GLTA L + +G FE+ + GG W
Sbjct: 35 IVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIW 70
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 30.9 bits (70), Expect = 3.9
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 317 VRFQDGSYEQVDIILYCTGYTYRYP---FLH-ESCGIKVVNKNVQPLYKHLINIEHPSMC 372
V F DG+ E D +LY TG R P L+ + G+ V N NI P++
Sbjct: 257 VLFSDGTTELFDTVLYATG---RKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNI--PNIF 311
Query: 373 IIG 375
+G
Sbjct: 312 AVG 314
Score = 30.6 bits (69), Expect = 6.0
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 950 VRFQDGSYEQVDIILCCTGYSNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILG 1008
V F DG+ E D +L TG L+ + G+ V N NI P +F +G
Sbjct: 257 VLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNI--PNIFAVG 314
Score = 30.2 bits (68), Expect = 6.8
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 670 VRFQDGSYEQVDIILCCTGYTNHYPFLH-ESCGIKVVNKNVQPLYKHTINIEHPTMFILG 728
V F DG+ E D +L TG L+ + G+ V N NI P +F +G
Sbjct: 257 VLFSDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPNDCTNI--PNIFAVG 314
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 30.9 bits (70), Expect = 4.3
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 526 PEPFAGKRAVVVGSGPSGL 544
P +GK+ ++G+GP+GL
Sbjct: 188 RAPKSGKKVAIIGAGPAGL 206
>gnl|CDD|217909 pfam04121, Nup84_Nup100, Nuclear pore protein 84 / 107. Nup84p forms
a complex with five proteins, of which Nup120p, Nup85p,
Sec13p, and a Sec13p homologues. This Nup84p complex in
conjunction with Sec13-type proteins is required for
correct nuclear pore biogenesis.
Length = 685
Score = 31.2 bits (71), Expect = 4.3
Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 11/62 (17%)
Query: 1032 GHITLPSKEEMLADT-KQEVLAHLNEGQNPNTFHIIGHRSENFLNSIISMMRDESPLPPV 1090
G + PS E+ D+ + + A+LN+ II R EN + S + +E P+P
Sbjct: 221 GDL--PSLLEVSGDSWEDTLWAYLNQ--------IIDIRVENEIRSSGRVSYEELPIPSP 270
Query: 1091 LL 1092
L
Sbjct: 271 YL 272
>gnl|CDD|237806 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 30.7 bits (69), Expect = 4.8
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 4 DKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYT 53
++ LH+ +IG G+ A + E G+ T E D +GG V
Sbjct: 11 TRSKLQLHVAIIGSGSAAFAAAIKAAEHGA--RVTIIEGADVIGGCCVNV 58
>gnl|CDD|119436 cd05177, PI3Kc_C2_gamma, Phosphoinositide 3-kinase (PI3K), class
II, gamma isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks play an important role in a
variety of fundamental cellular processes, including
cell motility, the Ras pathway, vesicle trafficking and
secretion, immune cell activation and apoptosis. They
can be divided into three main classes (I, II, and III),
defined by their substrate specificity, regulation, and
domain structure. Class II PI3Ks preferentially use
PtdIns as a substrate to produce PtdIns(3)P, but can
also phosphorylate PtdIns(4)P. They function as monomers
and do not associate with any regulatory subunits. Class
II enzymes contain an N-terminal Ras binding domain, a
lipid binding C2 domain, a PI3K homology domain of
unknown function, an ATP-binding cataytic domain, a Phox
homology (PX) domain, and a second C2 domain at the
C-terminus. The class II gamma isoform, PI3K-C2gamma, is
expressed in the liver, breast, and prostate. It's
biological function remains unknown.
Length = 354
Score = 30.2 bits (68), Expect = 6.5
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 409 PSMCIIGIPVESCGIKVVNKNVQPLYKHLINIDHPS--MCIIGIPGDTVVFYMFDLQ 463
P++ + GI ++C N PL IN + + + II GD + M LQ
Sbjct: 56 PALRVKGIDADAC--SYFTSNAAPLKISFINANPLAKNISIIFKTGDDLRQDMLVLQ 110
>gnl|CDD|237790 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 30.3 bits (68), Expect = 7.1
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWV 51
+ LHI VIG G + A + TE G+ T + +GGT V
Sbjct: 2 MSDNNLHIAVIGSGGSAMAAALKATERGAR---VTLIERGTIGGTCV 45
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 30.4 bits (69), Expect = 7.2
Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 8/81 (9%)
Query: 600 HSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRA--STVFLSHHSE------RVTSLC 651
+ D E GK+ V+GSG +GL D+A T+F + H +
Sbjct: 128 NGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLVYGIPEFR 187
Query: 652 LPNNVVLKPDVAELTPTGVRF 672
LP V+K ++ + GV+
Sbjct: 188 LPKETVVKKEIENIKKLGVKI 208
>gnl|CDD|187609 cd05351, XR_like_SDR_c, xylulose reductase-like, classical (c)
SDRs. Members of this subgroup include proteins
identified as L-xylulose reductase (XR) and carbonyl
reductase; they are members of the SDR family. XR,
catalyzes the NADP-dependent reduction of L-xyulose and
other sugars. Tetrameric mouse carbonyl reductase is
involved in the metabolism of biogenic and xenobiotic
carbonyl compounds. This subgroup also includes
tetrameric chicken liver D-erythrulose reductase, which
catalyzes the reduction of D-erythrulose to D-threitol.
SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRS are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes have a 3-glycine N-terminal NAD(P)(H)-binding
pattern (typically, TGxxxGxG in classical SDRs and
TGxxGxxG in extended SDRs), while substrate binding is
in the C-terminal region. A critical catalytic Tyr
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering), is often found in a
conserved YXXXK pattern. In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or
additional Ser, contributing to the active site.
Substrates for these enzymes include sugars, steroids,
alcohols, and aromatic compounds. The standard reaction
mechanism is a proton relay involving the conserved Tyr
and Lys, as well as Asn (or Ser).
Length = 244
Score = 29.7 bits (67), Expect = 7.3
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 867 FAGKQAVVVGSGQS-GLDITLDIATTGKQAVVVGSGQSGLD 906
FAGK+A+V G+G+ G +A G + V V Q+ LD
Sbjct: 5 FAGKRALVTGAGKGIGRATVKALAKAGARVVAVSRTQADLD 45
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 30.0 bits (68), Expect = 7.3
Identities = 16/86 (18%), Positives = 33/86 (38%), Gaps = 12/86 (13%)
Query: 610 FAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCL-------PNNVVLKPD- 661
F GK VV+G G S ++ L ++ A V L H + + + + + +
Sbjct: 141 FKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNT 200
Query: 662 ----VAELTPTGVRFQDGSYEQVDII 683
+ GV ++ E+ ++
Sbjct: 201 VVKEILGDDVEGVVLKNVKGEEKELP 226
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0864 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 58,356,564
Number of extensions: 5795501
Number of successful extensions: 5411
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5369
Number of HSP's successfully gapped: 131
Length of query: 1129
Length of database: 10,937,602
Length adjustment: 107
Effective length of query: 1022
Effective length of database: 6,191,724
Effective search space: 6327941928
Effective search space used: 6327941928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (28.2 bits)