RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12350
(1129 letters)
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A
{Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A*
2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A*
2xls_A* 2xlr_A*
Length = 464
Score = 221 bits (564), Expect = 4e-63
Identities = 94/424 (22%), Positives = 155/424 (36%), Gaps = 55/424 (12%)
Query: 748 GPGGLTATKRLTEAG----NGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSL 803
GP G+ + A FE+ + GG W YT G D+ G PVHSSMY+ L
Sbjct: 11 GPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYL 70
Query: 804 KTNLPKDLMELCGYG---HKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRD 860
+N PK+ +E Y H G SY + + + Y + + +
Sbjct: 71 WSNGPKECLEFADYTFDEHFGKPIASYPPREVLWD-YIKGRVEKAGVRKYIRFNTAVRHV 129
Query: 861 YRTPEPFAGKQ-------------------AVVVGSGQSGLDITLDIA------------ 889
+ + VV +G +
Sbjct: 130 EFNED---SQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFEKFGGRILHA 186
Query: 890 --------TTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPD 941
K ++VGS S DI + +S + P N +P+
Sbjct: 187 HDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDERPN 246
Query: 942 VAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHESCGIKVVNKN-VQPLYKHTINIE 1000
+ + F DGS E+VD I+ CTGY +H+PFL++ + N+ LYK + +
Sbjct: 247 LVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWED 306
Query: 1001 HPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEEMLADTKQEVLAHLNEGQNP 1060
+P F +G+ FN+FD Q + ++ G + LPSKEEM AD+ +
Sbjct: 307 NPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMAWR----EKELTL 362
Query: 1061 NTFHIIGHRSENFLNSIISMMRDESPLPPVLLKVYFDSYGQLTEDFIGFRNNKYQIFNDQ 1120
T + +++ ++I M S P K + + E+ + FR++ Y+
Sbjct: 363 VTAEEMYTYQGDYIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMTFRDHSYRSLMTG 422
Query: 1121 AYVR 1124
Sbjct: 423 TMAP 426
Score = 135 bits (340), Expect = 1e-33
Identities = 45/155 (29%), Positives = 73/155 (47%), Gaps = 1/155 (0%)
Query: 580 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVF 639
++ P PEF+G + ILH+ D+R F K ++VGS S DI +
Sbjct: 165 FSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKL 224
Query: 640 LSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYTNHYPFLHES 699
+S + P N +P++ + F DGS E+VD I+ CTGY +H+PFL++
Sbjct: 225 ISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEKVDAIILCTGYIHHFPFLNDD 284
Query: 700 CGIKVVNKN-VQPLYKHTINIEHPTMFILGVSFTI 733
+ N+ LYK + ++P F +G+
Sbjct: 285 LRLVTNNRLWPLNLYKGVVWEDNPKFFYIGMQDQW 319
Score = 119 bits (299), Expect = 2e-28
Identities = 38/128 (29%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 12 IGVIGGGAGGLTATKRLTEPG----SGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHS 67
I ++G G G+ + FE+ + GG W YT +TG D+ G PVHS
Sbjct: 5 IAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHS 64
Query: 68 SMYKSLKTNLPKEIMELSGYH---HKGHPDKSYIAANDVLEYLNDFADNFNLRNLCLVNK 124
SMY+ L +N PKE +E + Y H G P SY + +Y+ + +R N
Sbjct: 65 SMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNT 124
Query: 125 NVQPLYKH 132
V+ + +
Sbjct: 125 AVRHVEFN 132
Score = 100 bits (251), Expect = 2e-22
Identities = 32/136 (23%), Positives = 50/136 (36%), Gaps = 4/136 (2%)
Query: 126 VQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQ 185
LYK ++ ++P IG+ F +FD Q + ++ G + LPSK EM AD+
Sbjct: 295 PLNLYKGVVWEDNPKFFYIGMQDQWYSFNMFDAQAWYARDVIMGRLPLPSKEEMKADSMA 354
Query: 186 DVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTE 245
L + G Y+ +L M S P K + E E+
Sbjct: 355 WREKELTLVTAEEMYTYQGD----YIQNLIDMTDYPSFDIPATNKTFLEWKHHKKENIMT 410
Query: 246 FRKDKYKIINEKAFVR 261
FR Y+ +
Sbjct: 411 FRDHSYRSLMTGTMAP 426
Score = 99.3 bits (247), Expect = 7e-22
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 267 NGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQ 326
+ S DI +S + ++P N ++P++ + F DGS E+
Sbjct: 205 SSYSAEDIGSQCYKYGAKKLISCYRTAPMGYKWPENWDERPNLVRVDTENAYFADGSSEK 264
Query: 327 VDIILYCTGYTYRYPFLHESCGIKVVNKN-VQPLYKHLINIEHPSMCIIG 375
VD I+ CTGY + +PFL++ + N+ LYK ++ ++P IG
Sbjct: 265 VDAIILCTGYIHHFPFLNDDLRLVTNNRLWPLNLYKGVVWEDNPKFFYIG 314
Score = 70.4 bits (172), Expect = 1e-12
Identities = 18/78 (23%), Positives = 31/78 (39%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDIST 552
+ + ++S P P+F+G + I+H+H++R F K ++VGS S DI
Sbjct: 159 VCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYK 218
Query: 553 EATTVSAYLRFDNKTITK 570
K
Sbjct: 219 YGAKKLISCYRTAPMGYK 236
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura
genomics, protein structure initiative; HET: FAD NDP;
2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5
PDB: 2gvc_A* 1vqw_A*
Length = 447
Score = 193 bits (491), Expect = 2e-53
Identities = 77/442 (17%), Positives = 139/442 (31%), Gaps = 78/442 (17%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG-----------------CDQ 790
GP GL K L T FE+ + GG W YT +
Sbjct: 15 GPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGP 74
Query: 791 YGLP-VHSSMYKSLKTNLPKDLMELCGYGHKGNADKSYIGAKDV---LENY--NHPIYPE 844
LP S +Y+ L+TN P +LM C K + + Y + +
Sbjct: 75 AALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQT-LQFPHRHTIQEYQRIYAQPLLPFIK 133
Query: 845 FKGKDMCQIPI----------LHSRDYRTPEPFAGKQAVVVGSGQ---------SGLDIT 885
+ + + + F AV + +G GLD
Sbjct: 134 LATDVLDIEKKDGSWVVTYKGTKAGSPISKDIF---DAVSICNGHYEVPYIPNIKGLDEY 190
Query: 886 LDIAT---------------TGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSL 930
G+ +VVG S D+ + A
Sbjct: 191 AKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSL--LGGGD 248
Query: 931 CLPNNVVLKPDVAELTPTG--VRFQDGSYEQ-VDIILCCTGYSNHYPFLHES------CG 981
++ P++ + PT + + G +D ++ CTGY PF +
Sbjct: 249 IQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYSVPFPSLAKLKSPETK 308
Query: 982 IKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQVRLFQQLMQGHITLPSKEE 1041
+ +V +Y+H I PT+ +G+ H + F Q ++ G + LPSKEE
Sbjct: 309 LIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLARVWSGRLKLPSKEE 368
Query: 1042 MLADTKQEVLAHLNEGQNPNTFHIIGHRSE-NFLNSIISMMRDESPLPPVLL--KVYFDS 1098
L + + + N +H + + + ++N + + +P+ + +
Sbjct: 369 QLKWQDELMFS---LSGANNMYHSLDYPKDATYINKLHDWCKQATPVLEEEFPSPYWGEK 425
Query: 1099 YGQLTEDFIGFRNNKYQIFNDQ 1120
+ E+ R + I +
Sbjct: 426 ERSIRENMWSIRAKFFGIEPPK 447
Score = 126 bits (317), Expect = 7e-31
Identities = 39/170 (22%), Positives = 65/170 (38%), Gaps = 15/170 (8%)
Query: 580 YNHPIYPEFKGKDMCQI----PILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRA 635
Y P P KG D +LHS +R PE F G+ +VVG S D+ + A
Sbjct: 176 YEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVA 235
Query: 636 STVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG--VRFQDGSYEQ-VDIILCCTGYTNH 692
++ P++ + PT + + G +D ++ CTGY
Sbjct: 236 KHPIYQSL--LGGGDIQNESLQQVPEITKFDPTTREIYLKGGKVLSNIDRVIYCTGYLYS 293
Query: 693 YPFLHES------CGIKVVNKNVQPLYKHTINIEHPTMFILGVSFTIEEF 736
PF + + +V +Y+H I PT+ +G++ + F
Sbjct: 294 VPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPF 343
Score = 100 bits (251), Expect = 2e-22
Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 19/122 (15%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG-------------- 57
I +IG G GL K L + T FE+ + GG W YT
Sbjct: 9 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 68
Query: 58 ---RDQYGLP-VHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADN 113
LP S +Y+ L+TN P E+M K + + + EY +A
Sbjct: 69 EPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQSFKPQT-LQFPHRHTIQEYQRIYAQP 127
Query: 114 FN 115
Sbjct: 128 LL 129
Score = 93.1 bits (231), Expect = 6e-20
Identities = 30/155 (19%), Positives = 55/155 (35%), Gaps = 6/155 (3%)
Query: 106 YLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQ 165
+ + L +V +Y+H+ I P++ +G+ V F Q F +
Sbjct: 296 FPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHVVPFPTSQAQAAFLAR 355
Query: 166 LMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMG-QRSEKYLNSLCSMMRDESPV 224
+ G + LPSK E L ++ + N +H + + Y+N L + +PV
Sbjct: 356 VWSGRLKLPSKEEQLKWQDELMF---SLSGANNMYHSLDYPKDATYINKLHDWCKQATPV 412
Query: 225 PPVLL--KIYFESFARCSEDFTEFRKDKYKIINEK 257
+ E E+ R + I K
Sbjct: 413 LEEEFPSPYWGEKERSIRENMWSIRAKFFGIEPPK 447
Score = 88.9 bits (220), Expect = 1e-18
Identities = 25/126 (19%), Positives = 47/126 (37%), Gaps = 12/126 (9%)
Query: 267 NGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTG--VRFQDGSY 324
S D+ ++ A ++ + P+I + PT + + G
Sbjct: 220 GASSANDLVRHLTPVAKHPIYQSLLG--GGDIQNESLQQVPEITKFDPTTREIYLKGGKV 277
Query: 325 EQ-VDIILYCTGYTYRYPFLHES------CGIKVVNKNVQPLYKHLINIEHPSMCIIGYT 377
+D ++YCTGY Y PF + + +V +Y+H+ I P++ +G
Sbjct: 278 LSNIDRVIYCTGYLYSVPFPSLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLA 337
Query: 378 YR-YPF 382
PF
Sbjct: 338 LHVVPF 343
Score = 77.7 bits (191), Expect = 6e-15
Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQI----PIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITH 548
I + +Y P P+ KG D ++HS +R PE F G+ +VVG S D+
Sbjct: 170 SICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVR 229
Query: 549 DISTEATTV 557
++ A
Sbjct: 230 HLTPVAKHP 238
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A
{Stenotrophomonas maltophilia}
Length = 357
Score = 132 bits (334), Expect = 1e-33
Identities = 58/335 (17%), Positives = 103/335 (30%), Gaps = 89/335 (26%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVHSSMYKSLKTNL 807
G GL+A L +G + + + GG W + + SL
Sbjct: 12 GQSGLSAGYFLRRSGLSYVI--LDAEASPGGAWQHA----------------WHSLHLFS 53
Query: 808 PKDLMELCGYGHKGNADKSYIGAKDV---LENY--------------------------- 837
P + G+ + Y +V L Y
Sbjct: 54 PAGWSSIPGWPMPASQG-PYPARAEVLAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVV 112
Query: 838 -------------------NHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSG 878
PE++G + LHS Y TP PFAG + ++G G
Sbjct: 113 ARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGG 172
Query: 879 QSGLDITLDIATTGKQAVVVGSGQSGLDITLD---IATRASTVFLSHHSER--------- 926
SG I +++T + + + L +D + RA+ + + R
Sbjct: 173 NSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGF 232
Query: 927 --------VTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTGYSNHYPFLHE 978
V + P A +PTG+++ DG+ D ++ CTG+ L +
Sbjct: 233 GDIVMVPPVLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHL-K 291
Query: 979 SCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHT 1013
+ V+ + P++++LG
Sbjct: 292 GLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGDWN 326
Score = 110 bits (278), Expect = 2e-26
Identities = 44/233 (18%), Positives = 80/233 (34%), Gaps = 45/233 (19%)
Query: 499 YSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVS 558
+ P+++G + +HS Y TP PFAG R ++G G SG I ++ST A T
Sbjct: 131 WGEAYTPEYQGLESFAGIQLHSAHYSTPAPFAGMRVAIIGGGNSGAQILAEVSTVAETTW 190
Query: 559 AYLRFDNKTITKRKKFDKGRNYNHPIYPEFKGKDMCQIPI---LHSRDYRTPEPFAGKQA 615
F + + G+ + + ++ R P+ G
Sbjct: 191 ITQH--------EPAF---------LADDVDGRVLFERATERWKAQQEGREPDLPPGGFG 233
Query: 616 VVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRFQDG 675
+V V + P A +PTG+++ DG
Sbjct: 234 DIVMVPP------------------------VLDARARGVLAAVPPPARFSPTGMQWADG 269
Query: 676 SYEQVDIILCCTGYTNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILG 728
+ D ++ CTG+ L + + V+ + P++++LG
Sbjct: 270 TERAFDAVIWCTGFRPALSHL-KGLDLVTPQGQVEVDGSGLRALAVPSVWLLG 321
Score = 73.6 bits (181), Expect = 6e-14
Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 19/104 (18%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVHSSMYKSL 73
VIGGG GL+A L G + + + GG W + + SL
Sbjct: 8 VIGGGQSGLSAGYFLRRSGLSYVI--LDAEASPGGAWQHA----------------WHSL 49
Query: 74 KTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLR 117
P + G+ Y A +VL YL + + L
Sbjct: 50 HLFSPAGWSSIPGWPMPASQG-PYPARAEVLAYLAQYEQKYALP 92
Score = 58.2 bits (141), Expect = 6e-09
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 1/93 (1%)
Query: 294 VKKLRFPNNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVVN 353
V R + P A +PTG+++ DG+ D +++CTG+ L + +
Sbjct: 241 VLDARARGVLAAVPPPARFSPTGMQWADGTERAFDAVIWCTGFRPALSHL-KGLDLVTPQ 299
Query: 354 KNVQPLYKHLINIEHPSMCIIGYTYRYPFLHES 386
V+ L + PS+ ++GY +
Sbjct: 300 GQVEVDGSGLRALAVPSVWLLGYGDWNGMASAT 332
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 72.5 bits (178), Expect = 2e-13
Identities = 37/224 (16%), Positives = 72/224 (32%), Gaps = 23/224 (10%)
Query: 837 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAV 896
YN P P G +H + + F Q VV+G +SG D +A G
Sbjct: 142 YNFPKKPFKYG--------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIA 193
Query: 897 VVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG----VRF 952
+ S D D + R S + + + V ++ + F
Sbjct: 194 LYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARI-EMNVHYTVKDIDFNNGQYHISF 252
Query: 953 QDGSYEQV--DIILCCTGYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVP 1010
G + IL + P + + + + + +P +F++G
Sbjct: 253 DSGQSVHTPHEPILATGFDATKNPIV-QQLFVTTNQDIKLTTHDESTR--YPNIFMIGAT 309
Query: 1011 RHTLLFNL-----FDLQVRLFQQLMQGHITLPSKEEMLADTKQE 1049
L F + + L+ LP+K+E++ + ++
Sbjct: 310 VENDNAKLCYIYKFRARFAVLAHLLTQREGLPAKQEVIENYQKN 353
Score = 71.4 bits (175), Expect = 3e-13
Identities = 30/190 (15%), Positives = 55/190 (28%), Gaps = 43/190 (22%)
Query: 580 YNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVF 639
YN P P G +H + + F Q VV+G +SG D +A S +
Sbjct: 142 YNFPKKPFKYG--------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAKNGSDIA 193
Query: 640 LSHHSERVTSLCLPNNVVLKP----DVAELTPTG----------------------VRFQ 673
L + + +V L P + + G + F
Sbjct: 194 LYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFD 253
Query: 674 DGSYEQV--DIILCCTGYTNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVS- 730
G + IL P + + + + + +P +F++G +
Sbjct: 254 SGQSVHTPHEPILATGFDATKNPIV-QQLFVTTNQDIKLTTHDESTR--YPNIFMIGATV 310
Query: 731 ---FTIEEFI 737
+I
Sbjct: 311 ENDNAKLCYI 320
Score = 60.6 bits (147), Expect = 1e-09
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 493 IISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDIST 552
+++ +Y+ P P G +H E + F + VV+G SG D + ++
Sbjct: 136 FVATGDYNFPKKPFKYG--------IHYSEIEDFDNFNKGQYVVIGGNESGFDAAYQLAK 187
Query: 553 EATTVSAYLR 562
+ ++ Y
Sbjct: 188 NGSDIALYTS 197
Score = 47.1 bits (112), Expect = 2e-05
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 10/105 (9%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYG-LPVHSSMYKS 72
+IG GA G+ L + G T + VG ++ + + + S
Sbjct: 9 IIGAGAAGIGMAITLKD--FGITDVIILEKGTVGHSF-------KHWPKSTRTITPSFTS 59
Query: 73 LKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLR 117
+P ++ +I+ EYL A+++ L
Sbjct: 60 NGFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELN 104
Score = 30.9 bits (70), Expect = 2.7
Identities = 10/110 (9%), Positives = 24/110 (21%), Gaps = 27/110 (24%)
Query: 268 GPSGLDITHDISTEATTVFLSHHS---------------------------EHVKKLRFP 300
SG D + ++ + + L + + +
Sbjct: 175 NESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEMNV 234
Query: 301 NNVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIK 350
+ VK D S + TG+ + + +
Sbjct: 235 HYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQQLFVT 284
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 63.1 bits (153), Expect = 5e-10
Identities = 110/699 (15%), Positives = 195/699 (27%), Gaps = 253/699 (36%)
Query: 39 TFEQTDNV-GGTWVYTEQTGRDQYG--LPVHSSMYKSLKTNLPKEIMELS----GY-HHK 90
+ E V ++ Q ++Q+ LP + + + + P EL GY
Sbjct: 15 SLEHVLLVPTASFFIASQL-QEQFNKILPEPTEGFAA--DDEPTTPAELVGKFLGYVSSL 71
Query: 91 GHPDKSYIAANDVLEY-LNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRD 149
P K + VL L +F + + L ++ L L+ + + ++
Sbjct: 72 VEPSKVG-QFDQVLNLCLTEFENCY------LEGNDIHALAAKLLQENDTT---LVKTKE 121
Query: 150 TVGFYLFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGR---LREGQNPNAFHIM--- 203
+ Y+ A ++A D + R NA ++
Sbjct: 122 LIKNYI--------------------TARIMAKRPFDKKSNSALFRAVGEGNA-QLVAIF 160
Query: 204 -GQ-RSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVR 261
GQ ++ Y +E L +Y +++ D +F + ++E +R
Sbjct: 161 GGQGNTDDYF--------EE------LRDLY-QTYHVLVGDLIKFSA---ETLSE--LIR 200
Query: 262 DPGAANG--PSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRF 319
A GL+I +L + P+ PD L +
Sbjct: 201 TTLDAEKVFTQGLNILE---------WLEN----------PS---NTPDKDYLLSIPISC 238
Query: 320 ------QDGSYEQVDIILYCTGYTYRYP--FLHESCGIKVVNKNV------------QPL 359
Q Y + G+T P G ++ + +
Sbjct: 239 PLIGVIQLAHYV---VTAKLLGFT---PGELRSYLKGATGHSQGLVTAVAIAETDSWESF 292
Query: 360 YKHLINIEHPSMCIIGY--TYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPS-M-CIIG 415
+ + + IG YP + S ++ +++ N PS M I
Sbjct: 293 FVSVRKAIT-VLFFIGVRCYEAYP--NTSLPPSILEDSLEN------NEGVPSPMLSISN 343
Query: 416 IP---VESCGIKVVNKNVQPLYKH----LINIDHPSMCIIGIPGDTVVFYMFDLQDKIRP 468
+ V+ + N ++ P K L+N ++
Sbjct: 344 LTQEQVQDY-VNKTNSHL-PAGKQVEISLVN--GAKNLVVS------------------- 380
Query: 469 GRGNPRPSACEADALPTNLTRLTYIISSRNYSNPVYPDFKGKDVCQIPIMHSHEYRTPEP 528
G P+ +L L + R P G D +IP S
Sbjct: 381 --GPPQ-----------SLYGLNLTL--RKAKAP-----SGLDQSRIP--FS-------- 410
Query: 529 FAGKRAVVVGSGPSGLDIT---HDISTEATTVSAYLRFDNKTITKRKKFDKGRNYNHPIY 585
+R + + L + H S L + I K N
Sbjct: 411 ---ERKLKFSN--RFLPVASPFH---------SHLLVPASDLINKD---LVKNNV----- 448
Query: 586 PEFKGKDMCQIPILHSRDYRTPEPFAGK--QAVVVGSGQSGLDITLDIATR-----ASTV 638
F KD+ QIP+ + D G + + SG I I +T
Sbjct: 449 -SFNAKDI-QIPVYDTFD--------GSDLRVL---SGSISERIVDCIIRLPVKWETTTQ 495
Query: 639 FLSHHSERVTSLCL-PNNVVLKPDVAELTP-----TGVR 671
F + H L P + LT TGVR
Sbjct: 496 FKATH-----ILDFGPGGA---SGLGVLTHRNKDGTGVR 526
Score = 52.4 bits (125), Expect = 9e-07
Identities = 64/331 (19%), Positives = 105/331 (31%), Gaps = 107/331 (32%)
Query: 615 AVVVGSGQSGLDITLDIATRASTV-FL----SHHSERVTSLCLPNNVVLKPDVAELTPT- 668
AV + S +A TV F + + TSL P+ + + E P+
Sbjct: 280 AVAIAETDSWESF-FVSVRKAITVLFFIGVRCYEAYPNTSLP-PSILEDSLENNEGVPSP 337
Query: 669 --GVRFQDGSYEQVDIILCCTGYTNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFI 726
+ + + EQV + TN + + I +VN +
Sbjct: 338 MLSIS--NLTQEQVQDYV---NKTNSHLPAGKQVEISLVNG--------------AKNLV 378
Query: 727 L--------GVSFTIEEFIKVCPNIVDRHG-PGGLTATKRLTEAGNGFTCTTFEQADNIG 777
+ G++ T+ + K P+ +D+ P ++R + N F
Sbjct: 379 VSGPPQSLYGLNLTLRK-AK-APSGLDQSRIPF----SERKLKFSNRF------------ 420
Query: 778 GTWLYTEHIGCDQYGLPV----HSSMYKSLKTNLPKDLMELCGYGHKGNADKSYIGAKDV 833
LPV HS + + KDL++ + AKD+
Sbjct: 421 ---------------LPVASPFHSHLLVPASDLINKDLVK----------NNVSFNAKDI 455
Query: 834 LENYNHPIYPEFKGKDMCQI--PILHS-RDYRTPEP--------FAGKQAVVVGSGQ-SG 881
P+Y F G D+ + I D P F + G G SG
Sbjct: 456 QI----PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASG 511
Query: 882 L-DITLDIAT-TGKQAVVVGSGQSGLDITLD 910
L +T TG + +V G+ LDI D
Sbjct: 512 LGVLTHRNKDGTGVRVIVAGT----LDINPD 538
Score = 33.5 bits (76), Expect = 0.50
Identities = 33/239 (13%), Positives = 58/239 (24%), Gaps = 96/239 (40%)
Query: 911 IATRASTVFLSHHSERVTSLCLPNNV-----VLKPDVAELTPTGVRFQDGSYEQVDII-L 964
+TR T LSH S L +P L+ ++ P E L
Sbjct: 4 YSTRPLT--LSHGSLE-HVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 965 CCT--GYSNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGVPRHTLLFNLFDLQ 1022
GY + V + + +L L F+
Sbjct: 61 VGKFLGYVSSL-----------VEPSKVGQFDQ----------VL-----NLCLTEFE-- 92
Query: 1023 VRLFQQLMQG---H---ITLPSKEEMLADTKQEVLAHLNEGQNPNTFHIIGHRSENFLNS 1076
++G H L + + +E++ +N++ +
Sbjct: 93 ----NCYLEGNDIHALAAKLLQENDTTLVKTKELI-------------------KNYITA 129
Query: 1077 IISMMR-DESPLPPVLLK--------------------VYFD-------SYGQLTEDFI 1107
I R + L + YF+ +Y L D I
Sbjct: 130 RIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLI 188
Score = 30.4 bits (68), Expect = 4.2
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 13/65 (20%)
Query: 195 QNPN--AFHIMGQRS----EKYLNSLCSMMRDESPVPPVLLKIYFESFARCS----EDF- 243
NP H G++ E Y + + D + K E + +
Sbjct: 1667 NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL 1726
Query: 244 --TEF 246
T+F
Sbjct: 1727 SATQF 1731
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 2e-09
Identities = 106/695 (15%), Positives = 205/695 (29%), Gaps = 207/695 (29%)
Query: 87 YHHKGHPD----KSYIAANDVLE-YLNDFADNFNLRNLCLVNKNVQPLYKHLIN---IEH 138
+HH H D + D+L + + F DNF+ C K+VQ + K +++ I+H
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFD----C---KDVQDMPKSILSKEEIDH 53
Query: 139 PSMCIIGIPRDTVGFY-LFDLQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNP 197
II G LF +L+ E+ V+ + E
Sbjct: 54 ----IIMSKDAVSGTLRLFWT--------------------LLSKQEEMVQKFVEEVLRI 89
Query: 198 NAFHIMGQRSEKYLNSLCSMMRDESPVPPVLLKIYFESFARCSEDFTEF------RKDKY 251
N Y L S ++ E P ++ ++Y E R D F R Y
Sbjct: 90 N-----------Y-KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137
Query: 252 KIINEKAFVRDP----------GAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPN 301
+ + P G+ G + + A V LS+ + +
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGS--GKTWV---------ALDVCLSYKVQ----CKMDF 182
Query: 302 NV-------VKKPD--IAELTPTGVRFQDGSYEQVDIILYCTGYTYRYPFLHESCGIKVV 352
+ P+ + L + + D ++ S ++
Sbjct: 183 KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD-------HSSNIKLRIHSIQAELR 235
Query: 353 NKNVQPLYKH--LI--NIEHPSM-------CIIGYTYRYPFLHESCGIKVVNKNVQPLYK 401
Y++ L+ N+++ C I T R+ +V +
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF--------KQVTDFLSAATTT 287
Query: 402 HLINIEHPSMCIIGI-PVESCGI--KVVNKNVQPLYKHLINIDHP-SMCIIG----IPGD 453
H I+++H SM + P E + K ++ Q L + ++ +P + II
Sbjct: 288 H-ISLDHHSM---TLTPDEVKSLLLKYLDCRPQDLPREVLTT-NPRRLSIIAESIRDGLA 342
Query: 454 TVVFYMFDLQDKIRPGRGNPRPSACEA--DALPTNLTRLTYIISSRNYSNPVYPDFKGKD 511
T + DK+ + E+ + L R + S V+P
Sbjct: 343 TWDNWKHVNCDKLT--------TIIESSLNVLEPAEYRKMF----DRLS--VFPP----S 384
Query: 512 VCQIPIM------HSHEYRTPEPFAG---KRAVVVGSGPSGLDITHDISTE--------- 553
IP + K ++V I E
Sbjct: 385 A-HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 554 ---ATTVSAY---LRFDNKTITKRKKFDKGRNY--NHPIYPEFKGKDMCQIPILHSR--- 602
+ V Y FD+ + Y +H + K + + L
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIP----PYLDQYFYSHIGH-HLKNIEHPERMTLFRMVFL 498
Query: 603 DYRTPEPFAGKQAVVVGSGQSG----LDITLDIATRASTVFLSH--HSERVTSLC--LPN 654
D+R F ++ + + L+ + + + + V ++ LP
Sbjct: 499 DFR----FLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 655 ---NVVLKPD-----VAELTPTGVRFQDGSYEQVD 681
N++ +A + F++ +++QV
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEE-AHKQVQ 588
Score = 53.3 bits (127), Expect = 4e-07
Identities = 75/505 (14%), Positives = 148/505 (29%), Gaps = 143/505 (28%)
Query: 7 SPTLHIGVIG-GGAG--GLTATKRLTEPGSGFTCTTFEQTDNVGGT--WVYTEQTGRDQY 61
P ++ + G G+G + C +++ + W+ + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALD----------VCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 62 GLPVHSSMYKSLK----------TNLPKEIMELSGY-----HHKGHPDKSYIAANDVLEY 106
L + + + +N+ I + K + + +V
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-NCLLVLLNV--Q 254
Query: 107 LNDFADNFNLRNLC--LV---NKNV-----QPLYKHLINIEHPSMCIIGI-PRDTVGFYL 155
+ FNL C L+ K V H I+++H SM + P + L
Sbjct: 255 NAKAWNAFNLS--CKILLTTRFKQVTDFLSAATTTH-ISLDHHSM---TLTPDEVKSLLL 308
Query: 156 FDLQVRFF---LQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPN--AFHIMGQRSEKY 210
L R +++ + P + ++A++ +D ++ N + + S
Sbjct: 309 KYLDCRPQDLPREVLTTN---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 211 LNSL--------CSMMRDESPVPPVLLKIY-FESFARCSEDF-TEFRKDKYKIINEKAFV 260
L S+ + +P +LL + F+ + KY ++
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH--KYSLVE----- 418
Query: 261 RDPGAANGPSGLDITHDISTEATTVFLSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQ 320
+ P + I E L E+ L ++V +I P
Sbjct: 419 KQP--KESTISI---PSIYLE-----LKVKLENEYALH--RSIVDHYNI----PKTFDSD 462
Query: 321 DGSYEQVDIILYCTGYTYRYPFLHESCGIKVVNKNVQPLYKHLINIEHPSMCIIGYTYRY 380
D +D Y Y + H HL NIEHP + +R
Sbjct: 463 DLIPPYLD------QYFYSH-IGH-----------------HLKNIEHPERMTL---FRM 495
Query: 381 PFL----------HES---CGIKVVNKNVQPL--YKHLINIEHPSMCIIGIPVESCGIKV 425
FL H+S + +Q L YK I P + +
Sbjct: 496 VFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL--------VNA 547
Query: 426 VNKNVQPLYKHLINIDHPSMCIIGI 450
+ + + ++LI ++ I
Sbjct: 548 ILDFLPKIEENLIC--SKYTDLLRI 570
Score = 47.9 bits (113), Expect = 2e-05
Identities = 84/482 (17%), Positives = 144/482 (29%), Gaps = 132/482 (27%)
Query: 485 TNLTRLTY--IISSRNYSNPVYPDFKGKDVCQIP--IMHSHEYRTPEPFAGKRAVVVGSG 540
T + Y I+S + + +F KDV +P I+ E ++
Sbjct: 11 TGEHQYQYKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEI--------DHIIMSKDA 60
Query: 541 PSGLDITHDISTEATTVSAYLRFDNKTITKRKKFDKGRNYN---HPIYPEFKGKDMCQIP 597
SG + +F + + NY PI E + M
Sbjct: 61 VSGTLRLFWT-LLSKQEEMVQKFVEEVLRI--------NYKFLMSPIKTEQRQPSMMTRM 111
Query: 598 ILHSRD--YRTPEPFAG------------KQA---------VVV----GSGQSGL--DIT 628
+ RD Y + FA +QA V++ GSG++ + D+
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 629 LDIATRAS---TVF---LSHHS------ERVTSLC--LPNNVVLKPDVAELTPTGVR--- 671
L + +F L + + E + L + N + D + +
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 672 ------FQDGSYEQVDIIL---CCTGYTNHYPFLHESCGIKVV--NKNV----QPLYKHT 716
+ YE ++L N + SC I + K V
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL---SCKILLTTRFKQVTDFLSAATTTH 288
Query: 717 INIEHPTMFILGVSFTIEEFIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTF-EQADN 775
I+++H +M + T +E + +D P L R N + E +
Sbjct: 289 ISLDHHSM-----TLTPDEVKSLLLKYLD-CRPQDL---PREVLTTNPRRLSIIAESIRD 339
Query: 776 IGGTWLYTEHIGCDQYGLPVHSS-----------MYKSL-----KTNLPKDLMELCGYGH 819
TW +H+ CD+ + SS M+ L ++P L+ L +
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDV 399
Query: 820 KGN---------ADKSYIGAKDVLEN--YNHPIYPEFKGKDMCQIPILHSR---DYRTPE 865
+ S + K E+ IY E K K LH Y P+
Sbjct: 400 IKSDVMVVVNKLHKYSLV-EKQPKESTISIPSIYLELKVKLE-NEYALHRSIVDHYNIPK 457
Query: 866 PF 867
F
Sbjct: 458 TF 459
Score = 44.8 bits (105), Expect = 2e-04
Identities = 60/372 (16%), Positives = 104/372 (27%), Gaps = 112/372 (30%)
Query: 814 LCGYGHKGNADKSYIGAKDVLE-NYN---HPIYPEFKGKDMCQIPILHSRD--YRTPEPF 867
L + ++ +VL NY PI E + M + RD Y + F
Sbjct: 71 LLSKQE--EMVQKFVE--EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVV---VGSGQSGLDITLDIATRASTVFLSHHS 924
A K V L L K ++ +GSG++
Sbjct: 127 A-KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT--------------------- 164
Query: 925 ERVTSLCLPNNVVLKPDVAELTPTGVRF-----QDGSYEQVDII---LCCTGYSNHYPFL 976
+ +V L V + F S E V + L N
Sbjct: 165 ------WVALDVCLSYKVQCKMDFKI-FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 977 HESCGIKVVNKNVQPLYKHTINIE-HPT-MFIL-GVPRHTLLFNLFDLQVR--------- 1024
S IK+ ++Q + + + + + +L V ++ +N F+L +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQ 276
Query: 1025 LFQQLM---QGHITL---------PSKEEMLA---DTKQEVLAHLNEGQNPNTFHIIG-- 1067
+ L HI+L + +L D + + L NP II
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 1068 -----HRSENF-------LNSIISM-------------------MRDESPLPPVLLKVY- 1095
+N+ L +II + +P +LL +
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396
Query: 1096 FDSYGQLTEDFI 1107
FD +
Sbjct: 397 FDVIKSDVMVVV 408
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 51.6 bits (123), Expect = 1e-06
Identities = 32/243 (13%), Positives = 56/243 (23%), Gaps = 26/243 (10%)
Query: 500 SNPVYPDFKGKDVCQIPIMHSHEYRT------PEPFAGKRAVVVGSGPSGLDITHDI--S 551
P P + H +Y + ++G G S + D+ S
Sbjct: 190 GTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDS 249
Query: 552 TEATTVSAYLRFDNKTITKRKKFDKGRNYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFA 611
+ LR F P + + + R+ E
Sbjct: 250 YPSVQADMILRASALKPADDSPF--VNEVFAPKFTDL----IYSRE-HAERERLLREYHN 302
Query: 612 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPN--NVVLKPDVAELTPTG 669
+VV ++ R C+ EL
Sbjct: 303 TNYSVVDTD-------LIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRD 355
Query: 670 VRFQDGSYEQVDIILCCTGYT--NHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFIL 727
+ S E D ++ TGY H L ++ + T ++
Sbjct: 356 AGSGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQ 415
Query: 728 GVS 730
G S
Sbjct: 416 GFS 418
Score = 48.9 bits (116), Expect = 7e-06
Identities = 26/244 (10%), Positives = 54/244 (22%), Gaps = 56/244 (22%)
Query: 826 SYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRT------PEPFAGKQAVVVGSGQ 879
V+ P P+ + H Y + ++G GQ
Sbjct: 178 VRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQ 237
Query: 880 SGLDITLDIATTGKQA----VVVGSGQSGLD----------------------------- 906
S + +D+ + ++ S D
Sbjct: 238 SAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLL 297
Query: 907 ----ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKP----DVAELTPTGVRF------ 952
T + + + + + A T G+
Sbjct: 298 REYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAG 357
Query: 953 -QDGSYEQVDIILCCTGY--SNHYPFLHESCGIKVVNKNVQPLYKHTINIEHPTMFILGV 1009
+ S E D ++ TGY H L ++ + T ++ G
Sbjct: 358 SGELSVETYDAVILATGYERQLHRQLLEPLAEYLGDHEIGRDYRLQTDERCKVAIYAQGF 417
Query: 1010 PRHT 1013
+ +
Sbjct: 418 SQAS 421
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 50.9 bits (121), Expect = 2e-06
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 3 QDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+DK S + VIG G GL A +L G T FE GG + +
Sbjct: 7 EDKHSSAKRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAEGKAGG-KLRSVSQD 58
Score = 31.3 bits (70), Expect = 2.2
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 518 MHSHEYRTPEPFAGKRAVVVGSGPSGL 544
M + KR V+G+G SGL
Sbjct: 1 MAPSAGEDKHS-SAKRVAVIGAGVSGL 26
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 50.7 bits (122), Expect = 2e-06
Identities = 29/125 (23%), Positives = 48/125 (38%), Gaps = 30/125 (24%)
Query: 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD- 59
M SP L VIG G G+ + + G E ++VGGTW
Sbjct: 1 MSNRAKSPALDAVVIGAGVTGIYQAFLINQA--GMKVLGIEAGEDVGGTW-------YWN 51
Query: 60 QY-GL----PVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKS--YIAANDVLEYLNDFAD 112
+Y G ++ Y +LK +P+ + S + + ++L Y+N AD
Sbjct: 52 RYPGCRLDTESYAYGYFALKGIIPE-------------WEWSENFASQPEMLRYVNRAAD 98
Query: 113 NFNLR 117
++R
Sbjct: 99 AMDVR 103
Score = 42.2 bits (100), Expect = 8e-04
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 500 SNPVYPDFKGKDVCQIPIMHS----HEYRTPEP---FAGKRAVVVGSGPSG 543
S PD KG D + HS + F GKR V+G+G +G
Sbjct: 147 SASRMPDIKGIDSFKGESFHSSRWPTDAEGAPKGVDFTGKRVGVIGTGATG 197
Score = 42.2 bits (100), Expect = 0.001
Identities = 12/28 (42%), Positives = 21/28 (75%), Gaps = 1/28 (3%)
Query: 309 IAELTPTGVRFQDGSYEQVDIILYCTGY 336
I E+TP G++ D +Y+ +D+I+Y TG+
Sbjct: 363 IQEVTPEGIKTADAAYD-LDVIIYATGF 389
Score = 40.7 bits (96), Expect = 0.002
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 662 VAELTPTGVRFQDGSYEQVDIILCCTGY 689
+ E+TP G++ D +Y+ +D+I+ TG+
Sbjct: 363 IQEVTPEGIKTADAAYD-LDVIIYATGF 389
Score = 40.7 bits (96), Expect = 0.002
Identities = 10/28 (35%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Query: 942 VAELTPTGVRFQDGSYEQVDIILCCTGY 969
+ E+TP G++ D +Y+ +D+I+ TG+
Sbjct: 363 IQEVTPEGIKTADAAYD-LDVIIYATGF 389
Score = 37.6 bits (88), Expect = 0.024
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780
G G+ + +AG E +++GGTW
Sbjct: 18 GVTGIYQAFLINQAG--MKVLGIEAGEDVGGTW 48
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 49.1 bits (118), Expect = 6e-06
Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 26/121 (21%)
Query: 3 QDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD-QY 61
+ + + + V+G G GL A RL E G + E +VGG W +Y
Sbjct: 10 RRQPPEEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVW-------YWNRY 60
Query: 62 -GL----PVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNL 116
G Y S + +E + + Y + ++L Y+N AD F+L
Sbjct: 61 PGARCDIESIEYCY-SFSEEVLQE----------WNWTERYASQPEILRYINFVADKFDL 109
Query: 117 R 117
R
Sbjct: 110 R 110
Score = 42.2 bits (100), Expect = 9e-04
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 300 PN----NVVKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 336
N + + P I +TP GVR + YE +D ++ TG+
Sbjct: 351 DNVHLVDTLSAP-IETITPRGVRTSEREYE-LDSLVLATGF 389
Score = 39.9 bits (94), Expect = 0.004
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 662 VAELTPTGVRFQDGSYEQVDIILCCTGY 689
+ +TP GVR + YE +D ++ TG+
Sbjct: 363 IETITPRGVRTSEREYE-LDSLVLATGF 389
Score = 39.9 bits (94), Expect = 0.004
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 942 VAELTPTGVRFQDGSYEQVDIILCCTGY 969
+ +TP GVR + YE +D ++ TG+
Sbjct: 363 IETITPRGVRTSEREYE-LDSLVLATGF 389
Score = 37.9 bits (89), Expect = 0.017
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780
G GL A RL E G + E A ++GG W
Sbjct: 25 GFSGLYALYRLRELG--RSVHVIETAGDVGGVW 55
Score = 36.8 bits (86), Expect = 0.043
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 500 SNPVYPDFKGKDVCQIPIMHS----HEYRTPEPFAGKRAVVVGSGPSG 543
S P P+F G + H+ HE F+G+R V+G+G SG
Sbjct: 154 SVPQLPNFPGLKDFAGNLYHTGNWPHEPV---DFSGQRVGVIGTGSSG 198
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 48.9 bits (116), Expect = 7e-06
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+ ++GGG GL A T E + +GG V T +
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGG-KVATYRED 51
Score = 40.0 bits (93), Expect = 0.004
Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG 787
G GL A A T E + +GG + T
Sbjct: 13 GITGLAAAYYAERAFPDLNITLLEAGERLGG-KVATYRED 51
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 48.5 bits (115), Expect = 1e-05
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+ V+GGG GL A+ L+ E ++ +GG W+ + +
Sbjct: 4 TVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGG-WIRSVRGP 49
Score = 38.1 bits (88), Expect = 0.017
Identities = 10/40 (25%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG 787
G GL A+ L+ A E ++ +GG W+ +
Sbjct: 11 GISGLAASYHLSRAPCPPKVVLVESSERLGG-WIRSVRGP 49
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 47.6 bits (114), Expect = 2e-05
Identities = 36/123 (29%), Positives = 52/123 (42%), Gaps = 31/123 (25%)
Query: 4 DKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD-QYG 62
+T+ T+ VIG G GG+ A +L G T F++ D GGTW +Y
Sbjct: 3 AQTTHTVDAVVIGAGFGGIYAVHKLHHEL-GLTTVGFDKADGPGGTW-------YWNRY- 53
Query: 63 LP-----VHSSMYK-SLKTNLPKEIMELSGYHHKGHPD--KSYIAANDVLEYLNDFADNF 114
P S +Y+ S +L +E +YI ++LEYL D D F
Sbjct: 54 -PGALSDTESHLYRFSFDRDLLQE------------STWKTTYITQPEILEYLEDVVDRF 100
Query: 115 NLR 117
+LR
Sbjct: 101 DLR 103
Score = 40.2 bits (95), Expect = 0.004
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 500 SNPVYPDFKGKDVCQIPIMHS----HEYRTPEPFAGKRAVVVGSGPSG 543
S +P+ G D + +H+ AG+R V+G+G +G
Sbjct: 147 SAINFPNLPGLDTFEGETIHTAAWPEGK----SLAGRRVGVIGTGSTG 190
Score = 39.9 bits (94), Expect = 0.005
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 302 NV----VKKPDIAELTPTGVRFQDGSYEQVDIILYCTGY 336
NV +K+ I E+T GV +DG ++D++++ TG+
Sbjct: 344 NVEAVAIKENPIREVTAKGVVTEDGVLHELDVLVFATGF 382
Score = 37.9 bits (89), Expect = 0.020
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 662 VAELTPTGVRFQDGSYEQVDIILCCTGY 689
+ E+T GV +DG ++D+++ TG+
Sbjct: 355 IREVTAKGVVTEDGVLHELDVLVFATGF 382
Score = 37.9 bits (89), Expect = 0.020
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 942 VAELTPTGVRFQDGSYEQVDIILCCTGY 969
+ E+T GV +DG ++D+++ TG+
Sbjct: 355 IREVTAKGVVTEDGVLHELDVLVFATGF 382
Score = 37.9 bits (89), Expect = 0.020
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780
G GG+ A +L G T F++AD GGTW
Sbjct: 17 GFGGIYAVHKLHHEL-GLTTVGFDKADGPGGTW 48
Score = 31.8 bits (73), Expect = 1.6
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 581 NHPIYPEFKGKDMCQIPILHS----RDYRTPEPFAGKQAVVVGSGQSGLDITLDIATRAS 636
+ +P G D + +H+ AG++ V+G+G +G + +A
Sbjct: 147 SAINFPNLPGLDTFEGETIHTAAWPEGK----SLAGRRVGVIGTGSTGQQVITSLAPEVE 202
Query: 637 --TVF 639
TVF
Sbjct: 203 HLTVF 207
Score = 29.5 bits (67), Expect = 8.2
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 8/48 (16%)
Query: 838 NHPIYPEFKGKDMCQIPILHS----RDYRTPEPFAGKQAVVVGSGQSG 881
+ +P G D + +H+ AG++ V+G+G +G
Sbjct: 147 SAINFPNLPGLDTFEGETIHTAAWPEGK----SLAGRRVGVIGTGSTG 190
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 47.3 bits (112), Expect = 2e-05
Identities = 16/56 (28%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 6 TSPTLHIGVIGGGAGGLTA----TKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+ H+ +IGGG GL A K + E T E + VGG + T +
Sbjct: 2 SDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG-KIQTVKKD 56
Score = 35.7 bits (82), Expect = 0.081
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 5/44 (11%)
Query: 748 GPGGLTA----TKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG 787
G GL A K + E T E + +GG + T
Sbjct: 14 GITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG-KIQTVKKD 56
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 47.2 bits (113), Expect = 3e-05
Identities = 32/119 (26%), Positives = 43/119 (36%), Gaps = 28/119 (23%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRD-QYGLP 64
+ + + V+G G GL A R G T FE VGG W +Y P
Sbjct: 18 GTTSYDVVVVGAGIAGLYAIHRFRS--QGLTVRAFEAASGVGGVW-------YWNRY--P 66
Query: 65 -----VHSSMYK-SLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLR 117
V S Y S L +E + + Y ++L YL AD F+LR
Sbjct: 67 GARCDVESIDYSYSFSPELEQE----------WNWSEKYATQPEILAYLEHVADRFDLR 115
Score = 37.6 bits (88), Expect = 0.022
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
Query: 500 SNPVYPDFKGKDVCQIPIMHS----HEYRTPEPFAGKRAVVVGSGPSG 543
SN P F G D I+H+ H+ F GKR V+G+G SG
Sbjct: 159 SNANTPAFDGLDRFTGDIVHTARWPHDGV---DFTGKRVGVIGTGSSG 203
Score = 37.6 bits (88), Expect = 0.026
Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTW 780
G GL A R G T FE A +GG W
Sbjct: 30 GIAGLYAIHRFRSQG--LTVRAFEAASGVGGVW 60
Score = 36.4 bits (85), Expect = 0.051
Identities = 8/28 (28%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 309 IAELTPTGVRFQDGSYEQVDIILYCTGY 336
I + TG+ Y+ +D+I+ TG+
Sbjct: 368 IVGMDETGIVTTGAHYD-LDMIVLATGF 394
Score = 34.9 bits (81), Expect = 0.16
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 662 VAELTPTGVRFQDGSYEQVDIILCCTGY 689
+ + TG+ Y+ +D+I+ TG+
Sbjct: 368 IVGMDETGIVTTGAHYD-LDMIVLATGF 394
Score = 34.9 bits (81), Expect = 0.16
Identities = 7/28 (25%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 942 VAELTPTGVRFQDGSYEQVDIILCCTGY 969
+ + TG+ Y+ +D+I+ TG+
Sbjct: 368 IVGMDETGIVTTGAHYD-LDMIVLATGF 394
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 45.7 bits (108), Expect = 7e-05
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTG 57
+ +++ V+GGG GL L G E + +GG V T
Sbjct: 13 RTTGMNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGG-AVGTHALA 61
Score = 35.0 bits (80), Expect = 0.14
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 3/40 (7%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG 787
G GL L G E + +GG + T +
Sbjct: 25 GISGLAVAHHLRSR--GTDAVLLESSARLGG-AVGTHALA 61
Score = 33.0 bits (75), Expect = 0.53
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 518 MHSHEYRTPEPFAGKRAVVVGSGPSGL 544
H H + G VVG G SGL
Sbjct: 3 HHHHHHHHMPRTTGMNVAVVGGGISGL 29
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 41.4 bits (98), Expect = 0.001
Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 14/106 (13%)
Query: 868 AGKQAVVVGSGQSGLDITLDIATTGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSER- 926
++ +++G+G G + D+++ G Q VV + + L A A+ +
Sbjct: 144 GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPA--AAKAVQAGLEGLG 201
Query: 927 VTSLCLPNNVVLKPDVAELTP----TGVRFQDGSYEQVDIILCCTG 968
V L P +A L DG D+++ G
Sbjct: 202 VR-------FHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVG 240
Score = 33.7 bits (78), Expect = 0.30
Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 19/97 (19%)
Query: 611 AGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPN---------------N 655
++ +++G+G G + D+++ + + E+V L
Sbjct: 144 GKRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVR 203
Query: 656 VVLKPDVAELTP----TGVRFQDGSYEQVDIILCCTG 688
L P +A L DG D+++ G
Sbjct: 204 FHLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVG 240
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 41.9 bits (97), Expect = 0.001
Identities = 40/293 (13%), Positives = 80/293 (27%), Gaps = 50/293 (17%)
Query: 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGR------ 58
T T + +IG G GL A ++L G T E D VGG V T + G
Sbjct: 274 PTKKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGR-VATFRKGNYVADLG 330
Query: 59 ----------------DQYGLPVH-----SSMYKSLKTNLPKEIMELSGYHHKGHPDKSY 97
Q + + +Y++ +PKE E+
Sbjct: 331 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEF-------- 382
Query: 98 IAANDVLEYLNDFADNFNLRNLCLVNKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFD 157
N +LE + + + L ++ + +I ++ + I +
Sbjct: 383 ---NRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQE 439
Query: 158 LQVRFFLQLMQGHVTLPSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSM 217
+++ E + + Q + + +S+ +
Sbjct: 440 ELKELLNKMVNLK-------EKIKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCK 492
Query: 218 MRDESPVPPVLLKIYFESFARCSEDFTEFRKDKYKIINEKAFVRDPGAANGPS 270
DE L+ + +I++ + AN
Sbjct: 493 EYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDW--HFANLEFANATP 543
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 40.3 bits (94), Expect = 0.003
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-TWVYTEQTGRDQYG 62
+ VIGGG GLTAT+ LT +GF E D +GG +W + G
Sbjct: 35 DKDGPWDVIVIGGGYCGLTATRDLTV--AGFKTLLLEARDRIGGRSWSSNIDGYPYEMG 91
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 40.2 bits (94), Expect = 0.003
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
Query: 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQY 61
TS H+ ++G G GL+A L +G T E ++ GG V T + +
Sbjct: 29 ATSNPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASERPGGR-VRTYRNEEAGW 82
Score = 29.5 bits (66), Expect = 6.8
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
Query: 498 NYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGL 544
+ NP+ F+ D + + K V+VG+G +GL
Sbjct: 2 DDRNPLAECFQENDYEEF--LEIARNGLKATSNPKHVVIVGAGMAGL 46
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 40.0 bits (94), Expect = 0.004
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 605 RTPEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSER 646
++ E F GK+ V+VG G S LD T+ + A++V L H
Sbjct: 156 KSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE 197
Score = 34.6 bits (80), Expect = 0.17
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 892 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSER 926
GK+ V+VG G S LD T+ + A++V L H
Sbjct: 163 GKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHE 197
Score = 33.0 bits (76), Expect = 0.48
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 524 RTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVS 558
++ E F GKR V+VG G S LD T + A +V+
Sbjct: 156 KSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVT 190
Score = 30.0 bits (68), Expect = 5.4
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 862 RTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVV 898
++ E F GK+ V+VG G S LD T+ + +V
Sbjct: 156 KSVEDFKGKRVVIVGGGDSALDWTVGLIKNAASVTLV 192
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 39.5 bits (92), Expect = 0.005
Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
S I +IG G GL A L + G T E+TD+VGG
Sbjct: 4 SKDSRIAIIGAGPAGLAAGMYLEQAG-FHDYTILERTDHVGG 44
Score = 31.8 bits (72), Expect = 1.4
Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778
GP GL A L +AG T E+ D++GG
Sbjct: 15 GPAGLAAGMYLEQAGF-HDYTILERTDHVGG 44
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 39.2 bits (90), Expect = 0.006
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFE-QTDNVGGTWVYTEQTGRDQYGL 63
P I ++G G GL A LT +G T E + VGG + T + +
Sbjct: 40 PPGPPKRILIVGAGIAGLVAGDLLTR--AGHDVTILEANANRVGGR-IKTFHAKKGEPSP 96
Query: 64 PVHSSMY 70
+ Y
Sbjct: 97 FADPAQY 103
Score = 33.8 bits (76), Expect = 0.36
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 510 KDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGL 544
+D+ + + P KR ++VG+G +GL
Sbjct: 23 EDLKLRYLDVLIDNGLNPPGPPKRILIVGAGIAGL 57
Score = 31.1 bits (69), Expect = 2.4
Identities = 16/54 (29%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFE-QADNIGGTWLYTEHIGCDQYGLPVHSSMY 800
G GL A LT A G T E A+ +GG + T H + + Y
Sbjct: 53 GIAGLVAGDLLTRA--GHDVTILEANANRVGGR-IKTFHAKKGEPSPFADPAQY 103
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP:
c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A*
1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A*
2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A*
2v61_A* 2vrl_A* ...
Length = 520
Score = 39.1 bits (91), Expect = 0.009
Identities = 25/128 (19%), Positives = 38/128 (29%), Gaps = 27/128 (21%)
Query: 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-----------------T 49
S + V+GGG G+ A K L + SG E D VGG +
Sbjct: 2 SNKCDVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGS 59
Query: 50 WVYTEQTGR-----DQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVL 104
+V Q R + GL + + + + P + I D
Sbjct: 60 YVGPTQN-RILRLAKELGLETYKVNEVE--RLIHHVKGKSYPFRGPFPPVWNPITYLDHN 116
Query: 105 EYLNDFAD 112
+ D
Sbjct: 117 NFWRTMDD 124
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 39.1 bits (90), Expect = 0.009
Identities = 25/118 (21%), Positives = 38/118 (32%), Gaps = 30/118 (25%)
Query: 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGR------ 58
T T + +IG G GL A ++L G T E D VGG V T + G
Sbjct: 103 PTKKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGR-VATFRKGNYVADLG 159
Query: 59 ----------------DQYGLPVH-----SSMYKSLKTNLPKEIMELSGYHHKGHPDK 95
Q + + +Y++ +PKE E+ +
Sbjct: 160 AMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQEFNRLLEA 217
Score = 31.0 bits (69), Expect = 2.7
Identities = 28/177 (15%), Positives = 50/177 (28%), Gaps = 30/177 (16%)
Query: 724 MFILGVSFTIEEFIKVCPNIVDRHGPGGLTATKRLTEAGNGFTCTTFEQADNIGG----- 778
F + K I+ G GL A ++L G T E D +GG
Sbjct: 92 NFGIYKRIKPLPTKKTGKVIIIGSGVSGLAAARQLQSF--GMDVTLLEARDRVGGRVATF 149
Query: 779 -TWLYTEHIG---------------CDQYGLPVH-----SSMYKSLKTNLPKDLMEL--C 815
Y +G Q + + +Y++ +PK+ E+
Sbjct: 150 RKGNYVADLGAMVVTGLGGNPMAVVSKQVNMELAKIKQKCPLYEANGQAVPKEKDEMVEQ 209
Query: 816 GYGHKGNADKSYIGAKDVLENYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQA 872
+ A D N P+ + + Q+ H +D + +
Sbjct: 210 EFNRLLEATSYLSHQLDFNVLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKT 266
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 38.1 bits (87), Expect = 0.013
Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 9 TLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
T+ I +IG G GL+A + LT +G F+++ GG
Sbjct: 2 TVPIAIIGTGIAGLSAAQALTA--AGHQVHLFDKSRGSGG 39
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 38.3 bits (89), Expect = 0.013
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-TWVYTEQTGRDQY 61
V+GGG GL A + LT +G E + +GG + +
Sbjct: 6 VVGGGFSGLKAARDLTN--AGKKVLLLEGGERLGGRAYSRESRNVPGLR 52
Score = 29.8 bits (67), Expect = 6.4
Identities = 11/45 (24%), Positives = 15/45 (33%), Gaps = 3/45 (6%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWLYTEHIGCDQY 791
G GL A + LT A G E + +GG +
Sbjct: 10 GFSGLKAARDLTNA--GKKVLLLEGGERLGGRAYSRESRNVPGLR 52
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 38.0 bits (89), Expect = 0.014
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 607 PEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSER 646
F GK+ ++VG G S +D L++ A + L H +
Sbjct: 147 KAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ 186
Score = 31.8 bits (73), Expect = 1.2
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 892 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSER 926
GK+ ++VG G S +D L++ A + L H +
Sbjct: 152 GKRVLIVGGGDSAVDWALNLLDTARRITLIHRRPQ 186
Score = 31.4 bits (72), Expect = 1.8
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 526 PEPFAGKRAVVVGSGPSGLDITHDISTEATTVS 558
F GKR ++VG G S +D ++ A ++
Sbjct: 147 KAEFQGKRVLIVGGGDSAVDWALNLLDTARRIT 179
Score = 31.0 bits (71), Expect = 2.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 864 PEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVV 898
F GK+ ++VG G S +D L++ T ++ ++
Sbjct: 147 KAEFQGKRVLIVGGGDSAVDWALNLLDTARRITLI 181
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 37.8 bits (88), Expect = 0.018
Identities = 23/129 (17%), Positives = 41/129 (31%), Gaps = 26/129 (20%)
Query: 8 PTL--HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG----------------T 49
PTL + ++G G GL A L + +G + E D VGG
Sbjct: 2 PTLQRDVAIVGAGPSGLAAATALRK--AGLSVAVIEARDRVGGRTWTDTIDGAVLEIGGQ 59
Query: 50 WVYTEQTG----RDQYGLPVHSSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLE 105
WV +QT D+ GL + ++ + + ++
Sbjct: 60 WVSPDQTALISLLDELGLKTFERYREG--ESVYISSAGERTRYTGDSFPTNETTKKEMDR 117
Query: 106 YLNDFADNF 114
+++ D
Sbjct: 118 LIDEMDDLA 126
Score = 30.9 bits (70), Expect = 3.0
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 9/49 (18%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWLYTEHIGCDQYGLPV 795
GP GL A L +A G + E D +GG TW T+ I G +
Sbjct: 14 GPSGLAAATALRKA--GLSVAVIEARDRVGGRTW--TDTID----GAVL 54
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 37.9 bits (87), Expect = 0.021
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 9/62 (14%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFT-CTTFEQTDNVGG-TWVYTEQTGRDQYGL 63
+ + +IG G GL A L + +G C E D VGG T G
Sbjct: 5 SPAKKKVIIIGAGIAGLKAASTLHQ--NGIQDCLVLEARDRVGGRLQ-----TVTGYQGR 57
Query: 64 PV 65
Sbjct: 58 KY 59
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 37.7 bits (88), Expect = 0.024
Identities = 27/177 (15%), Positives = 45/177 (25%), Gaps = 61/177 (34%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGT------------------WLYTEHIGCD 789
GP GL G T F+ IGG + +
Sbjct: 382 GPAGLAFAINAAARG--HQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRM---IE 436
Query: 790 QYGLPVHSSMYKSLKTNLPKDLMELCGYGHKGNADKSYIGAKDVLENYNH--------PI 841
G+ + H AD+ L+ ++ P
Sbjct: 437 VTGVTLK--------------------LNHTVTADQ--------LQAFDETILASGIVPR 468
Query: 842 YPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVV 898
P G D +L D + G + ++G G G D + ++ G+
Sbjct: 469 TPPIDGID--HPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQN 523
Score = 36.5 bits (85), Expect = 0.061
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 2/55 (3%)
Query: 1 MVQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQ 55
M ++ V+G G GL G T F+ +GG + +Q
Sbjct: 365 MPILPAVQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQ 417
Score = 32.7 bits (75), Expect = 0.90
Identities = 30/195 (15%), Positives = 54/195 (27%), Gaps = 38/195 (19%)
Query: 500 SNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSA 559
P P G D ++ + + G + ++G G G D +S + S
Sbjct: 465 IVPRTPPIDGID--HPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQ 522
Query: 560 YLRFDNKTITKRKKFDKGRNYNHPIYPEFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVG 619
++ + +G + + P R + A K
Sbjct: 523 ------NIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSP----RQIVMLQRKASKPG---- 568
Query: 620 SGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVA--ELTPTGVRFQDGSY 677
GL T R + L V + P V+ ++ G+
Sbjct: 569 ---QGLGKTTGWIHRTT---LLSR-----------GVKMIPGVSYQKIDDDGLHVVINGE 611
Query: 678 EQ---VDIILCCTGY 689
Q VD ++ C G
Sbjct: 612 TQVLAVDNVVICAGQ 626
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 36.8 bits (86), Expect = 0.031
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 607 PEPFAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSER 646
+ FAG++ ++G G S +D L + A V + H ++
Sbjct: 149 LQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK 188
Score = 31.0 bits (71), Expect = 2.2
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 892 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSER 926
G++ ++G G S +D L + A V + H ++
Sbjct: 154 GRRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDK 188
Score = 30.2 bits (69), Expect = 3.4
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 526 PEPFAGKRAVVVGSGPSGLDITHDISTEATTVS 558
+ FAG+R ++G G S +D + A VS
Sbjct: 149 LQKFAGRRVAILGGGDSAVDWALMLEPIAKEVS 181
Score = 30.2 bits (69), Expect = 3.9
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 864 PEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVV 898
+ FAG++ ++G G S +D L + K+ ++
Sbjct: 149 LQKFAGRRVAILGGGDSAVDWALMLEPIAKEVSII 183
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 37.2 bits (86), Expect = 0.035
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 5 KTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG-TW-VYTEQTGRDQYG 62
K + + V+GGG GL + L + +G+ T E GG W D G
Sbjct: 7 KVKGSHSVVVLGGGPAGLCSAFELQK--AGYKVTVLEARTRPGGRVWTARGGSEETDLSG 64
Query: 63 LPVH 66
Sbjct: 65 ETQK 68
>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein
complex; HET: FMN ADP AMP; 2.0A {Methylophilus
methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB:
1djn_A* 1o95_A* 2tmd_A* 1djq_A*
Length = 729
Score = 37.0 bits (86), Expect = 0.037
Identities = 35/262 (13%), Positives = 68/262 (25%), Gaps = 55/262 (20%)
Query: 748 GPGGL----TATKRLTEAGNGFTCTTFEQADNIGGT------------------WLYTEH 785
GP G + G+T + A+ IGG + T+
Sbjct: 398 GPSGSEAARVLMES------GYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQ- 450
Query: 786 IGCDQYGLPVHSSMYKSLKTNLPKDLMELCGYGHKGNADKSYI--GAKDVLENYNHPIYP 843
+ S + + D + + ADK I GA+ + N +
Sbjct: 451 --ITKLLKKNKESQLALGQKPMTADDVL------QYGADKVIIATGARWNTDGTNCLTHD 502
Query: 844 EFKGKDMCQIPILHSRDYRTPEPFAGKQAVVVGSGQS--GLDITLDIATTGKQAVVV--- 898
G D L + GK+ V++ + + +AT G + +V
Sbjct: 503 PIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV 562
Query: 899 ---GSGQSGLD--------ITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTP 947
L+ L + R+ + + +
Sbjct: 563 HLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYNIWGDGSKRTYRGPGVS 622
Query: 948 TGVRFQDGSYEQVDIILCCTGY 969
+ + D ++ TG
Sbjct: 623 PRDANTSHRWIEFDSLVLVTGR 644
Score = 33.9 bits (78), Expect = 0.40
Identities = 7/46 (15%), Positives = 15/46 (32%), Gaps = 10/46 (21%)
Query: 11 HIGVIGGGAGGL----TATKRLTEPGSGFTCTTFEQTDNVGGTWVY 52
+ ++G G G + G+T + + +GG
Sbjct: 391 SVLIVGAGPSGSEAARVLMES------GYTVHLTDTAEKIGGHLNQ 430
Score = 29.6 bits (67), Expect = 6.9
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 8/42 (19%)
Query: 518 MHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSA 559
H + + ++VG+GPSG EA V
Sbjct: 376 RGWHPEKFRQTKNKDSVLIVGAGPSGS--------EAARVLM 409
>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta
fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium
loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A*
3alm_A* 3all_A*
Length = 379
Score = 36.5 bits (85), Expect = 0.039
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 2/46 (4%)
Query: 2 VQDKTSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47
V T V GGG GLTA L + +G+ E++ +
Sbjct: 4 VNKTPGKTRRAEVAGGGFAGLTAAIALKQ--NGWDVRLHEKSSELR 47
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 36.4 bits (83), Expect = 0.051
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTE 54
+ VIG G GL A KRL + G + + + GG T+
Sbjct: 12 DVLVIGAGPTGLGAAKRLNQID-GPSWMIVDSNETPGG-LASTD 53
Score = 32.2 bits (72), Expect = 1.0
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHI 786
GP GL A KRL + +G + + + GG T+
Sbjct: 19 GPTGLGAAKRLNQI-DGPSWMIVDSNETPGG-LASTDVT 55
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 35.9 bits (82), Expect = 0.056
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
+ ++G G+ GL+A + + E + GG
Sbjct: 68 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104
Score = 32.9 bits (74), Expect = 0.65
Identities = 7/31 (22%), Positives = 11/31 (35%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778
G GL+A + + E + GG
Sbjct: 74 GSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics; HET:
FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 36.0 bits (84), Expect = 0.057
Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 6/80 (7%)
Query: 610 FAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTS-----LCLPNNVVLKPDVAE 664
+ V+ + + L + T F ++ + L V + E
Sbjct: 139 LDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIRE 198
Query: 665 LT-PTGVRFQDGSYEQVDII 683
+ V DG + +
Sbjct: 199 IAGHADVVLADGRSIALAGL 218
Score = 33.7 bits (78), Expect = 0.28
Identities = 10/78 (12%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 892 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTS-----LCLPNNVVLKPDVAELT 946
+ V+ + + L + T F ++ + L V + E+
Sbjct: 141 QGKIGVIAASPMAIHHALMLPDWGETTFFTNGIVEPDADQHALLAARGVRVETTRIREIA 200
Query: 947 -PTGVRFQDGSYEQVDII 963
V DG + +
Sbjct: 201 GHADVVLADGRSIALAGL 218
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 36.0 bits (82), Expect = 0.075
Identities = 23/113 (20%), Positives = 36/113 (31%), Gaps = 15/113 (13%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPV----H 66
I +IG G GL A RLTE G +E D GG + D+ G H
Sbjct: 11 KIVIIGAGPTGLGAAVRLTELG-YKNWHLYECNDTPGG-LSRSF---LDENGFTWDLGGH 65
Query: 67 SSMYKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLNDFADNFNLRNL 119
++M+ + +S++ + N+ L
Sbjct: 66 VIF---SHYQYFDDVMDWAVQGWNVLQRESWVWVRGR---WVPYPFQNNIHRL 112
Score = 30.6 bits (68), Expect = 3.7
Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 13/125 (10%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG---TWLYTEHIGCDQYGLPVHSSMYKSLK 804
GP GL A RLTE G +E D GG ++L D G + S
Sbjct: 18 GPTGLGAAVRLTELG-YKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFS------H 70
Query: 805 TNLPKDLMELCGYGHKGNADKSYIGAKDVLENYNHPIYPE---FKGKDMCQIPILHSRDY 861
D+M+ G +S++ + Y + + C ++ S
Sbjct: 71 YQYFDDVMDWAVQGWNVLQRESWVWVRGRWVPYPFQNNIHRLPEQDRKRCLDELVRSHAR 130
Query: 862 RTPEP 866
EP
Sbjct: 131 TYTEP 135
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 35.4 bits (81), Expect = 0.092
Identities = 14/56 (25%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVH 66
I ++G G G ++L E G +Q D++GG Y + + + VH
Sbjct: 5 KILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGGN-SYDARD--SETNVMVH 55
Score = 31.6 bits (71), Expect = 1.5
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIGCDQYGLPVH 796
G G ++L E G +Q D+IGG Y + + VH
Sbjct: 12 GFSGAVIGRQLAEKG--HQVHIIDQRDHIGGN-SYDARD--SETNVMVH 55
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 35.5 bits (81), Expect = 0.098
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
I ++G G+ GL+A L+ T E GG
Sbjct: 82 IVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118
Score = 32.8 bits (74), Expect = 0.60
Identities = 11/40 (27%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG-TWLYTEHI 786
G GL+A L+ T E GG WL +
Sbjct: 88 GSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLF 127
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 35.1 bits (80), Expect = 0.13
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVH 66
++G G G +RL SG ++ ++GG Y D G+ +H
Sbjct: 34 IVGAGFAGSVLAERLAS--SGQRVLIVDRRPHIGGN-AYDC---YDDAGVLIH 80
Score = 33.6 bits (76), Expect = 0.34
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG---TWLYTEHIGCDQYG 792
G G +RL + G ++ +IGG + YG
Sbjct: 38 GFAGSVLAERLASS--GQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYG 83
>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic
hydroxylase, nicotine degradation, mono-oxygenase; HET:
FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2
d.16.1.2
Length = 397
Score = 34.6 bits (80), Expect = 0.16
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ 42
+ T I V+GG GLTA L + +G +E+
Sbjct: 2 SPTTDRIAVVGGSISGLTAALMLRD--AGVDVDVYER 36
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 34.9 bits (80), Expect = 0.16
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 11 HIGVIGGGAGGLTATKRLTEPGSGFT-CTTFEQTDNVGG 48
+ V+G G G++A KRL+E +G T E TD++GG
Sbjct: 6 RVIVVGAGMSGISAAKRLSE--AGITDLLILEATDHIGG 42
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A*
3ayl_A*
Length = 721
Score = 34.8 bits (78), Expect = 0.20
Identities = 29/228 (12%), Positives = 61/228 (26%), Gaps = 12/228 (5%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPG------SGFTCTTFEQTDNVGGTWVYTEQT--G 57
+ I ++GGGAGG+ A L SG +E + +
Sbjct: 53 PAGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKV 112
Query: 58 RDQYGLPVHSSMYKSLKTNLPKEIMELSG--YHHKGHPDKSYIAANDVL-EYLNDFADNF 114
R V +++ + I E+ + Y +A + F +
Sbjct: 113 RGLKAGRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPG 172
Query: 115 NLRNLCLV-NKNVQPLYKHLINIEHPSMCIIGIPRDTVGFYLFDLQVRFFLQLMQGHVTL 173
+ + N+ + + + E P + + G + + Q +V
Sbjct: 173 KVPTEFVFGNRVDRYVGSDPKDWEDPDSPTLKVLGVVAGGLVGNPQGENVAMYPIANVDP 232
Query: 174 PSKAEMLADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDE 221
A +L R I ++ ++
Sbjct: 233 AKIAAILNAATPPADALERIQTKYWPEFIAQYDGLTLGAAVREIVTVA 280
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure,
structural genomics; 2.20A {Pyrococcus horikoshii}
Length = 253
Score = 33.9 bits (77), Expect = 0.21
Identities = 11/44 (25%), Positives = 20/44 (45%)
Query: 180 LADTEQDVRGRLREGQNPNAFHIMGQRSEKYLNSLCSMMRDESP 223
+ + E D+R L G++ IM + E L L ++ D+
Sbjct: 3 MEEEEFDIREALANGEHLEKILIMAKYDESVLKKLIELLDDDLW 46
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase;
HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A*
3rp6_A*
Length = 407
Score = 34.2 bits (79), Expect = 0.22
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVG 47
+ VIG G GGL+A L + SG C +E +
Sbjct: 20 FQGHMKAIVIGAGIGGLSAAVALKQ--SGIDCDVYEAVKEIK 59
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 34.1 bits (79), Expect = 0.23
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 18/106 (16%)
Query: 868 AGKQAVVVGSGQSGLDITLDIATT----GKQAVVVGSGQSGLDITLDIATRASTVFLSHH 923
+ ++VG G I L++A T G +V + + + +H
Sbjct: 144 PQSRLLIVGGGV----IGLELAATARTAGVHVSLVETQPRLMSRAA--PATLADFVARYH 197
Query: 924 SER-VTSLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTG 968
+ + V + + V V DG+ D+++ G
Sbjct: 198 AAQGVD-------LRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 236
Score = 33.7 bits (78), Expect = 0.37
Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 29/100 (29%)
Query: 611 AGKQAVVVGSG-----------QSGLDITL-DIATR---------ASTVFLSHHSER-VT 648
+ ++VG G +G+ ++L + R + +H+ + V
Sbjct: 144 PQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVD 203
Query: 649 SLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTG 688
+ + V V DG+ D+++ G
Sbjct: 204 -------LRFERSVTGSVDGVVLLDDGTRIAADMVVVGIG 236
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 34.3 bits (78), Expect = 0.28
Identities = 9/19 (47%), Positives = 10/19 (52%)
Query: 14 VIGGGAGGLTATKRLTEPG 32
VIG G G + RL E G
Sbjct: 10 VIGTGYGAAVSALRLGEAG 28
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 33.5 bits (77), Expect = 0.38
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
V+G G GGL A L +G E++ +GG
Sbjct: 3 AVVVGAGLGGLLAGAFLA--RNGHEIIVLEKSAMIGG 37
Score = 30.4 bits (69), Expect = 4.1
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778
G GGL A L A NG E++ IGG
Sbjct: 9 GLGGLLAGAFL--ARNGHEIIVLEKSAMIGG 37
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 33.7 bits (76), Expect = 0.39
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 14 VIGGGAGGLTATKRLTEPG 32
++G G G T + L G
Sbjct: 51 IVGSGPIGCTYARELVGAG 69
>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase,
amidotransferase, ammonia assimilation, iron, zymogen;
HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}
Length = 456
Score = 32.9 bits (76), Expect = 0.59
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGG 778
GP GL A + L G+ +++ D +GG
Sbjct: 131 GPAGLAAAEELRAK--GYEVHVYDRYDRMGG 159
Score = 30.9 bits (71), Expect = 2.3
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 12 IGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
+GVIG G GL A + L G+ +++ D +GG
Sbjct: 125 VGVIGAGPAGLAAAEELRA--KGYEVHVYDRYDRMGG 159
Score = 30.6 bits (70), Expect = 3.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 524 RTPEPFAGKRAVVVGSGPSGL 544
RTP G V+G+GP+GL
Sbjct: 115 RTPSRELGLSVGVIGAGPAGL 135
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND
FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2
d.16.1.1 PDB: 3cox_A*
Length = 507
Score = 32.8 bits (74), Expect = 0.64
Identities = 11/19 (57%), Positives = 12/19 (63%)
Query: 14 VIGGGAGGLTATKRLTEPG 32
VIG G GG A RLT+ G
Sbjct: 16 VIGSGYGGAVAALRLTQAG 34
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 32.8 bits (73), Expect = 0.66
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 11 HIGVIGGGAGGLTATKRLTEPG-SGFTCTTFEQTDNVGG 48
+ ++G G G L +++ D+ GG
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGG 41
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 32.8 bits (74), Expect = 0.69
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQT--DNVGGTWV 51
+ I VIG G GL +L + + E+ V G V
Sbjct: 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGV 44
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 32.4 bits (74), Expect = 0.80
Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 9/59 (15%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDN---------VGGTWVYTEQTGRDQYGL 63
V+GGG GG TA K + T E + V G E GL
Sbjct: 7 VVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGL 65
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase, oxidoreductase; HET: FAD; 1.70A
{Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A*
1e1m_A* 1e1n_A* 1e6e_A*
Length = 460
Score = 32.5 bits (74), Expect = 0.89
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 7 SPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
T I V+G G G + L + S +E+ G
Sbjct: 4 EQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFG 45
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 32.6 bits (75), Expect = 0.91
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 10/48 (20%)
Query: 5 KTSPTLHIGVIGGGAGGL----TATKRLTEPGSGFTCTTFEQTDNVGG 48
+ V+G G GL R G+ E ++GG
Sbjct: 387 AKESDARVLVVGAGPSGLEAARALGVR------GYDVVLAEAGRDLGG 428
Score = 29.9 bits (68), Expect = 5.1
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 518 MHSHEYRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSA 559
H R + R +VVG+GPSGL EA
Sbjct: 378 RGWHPERIRAKESDARVLVVGAGPSGL--------EAARALG 411
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 32.3 bits (74), Expect = 0.91
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 10 LHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
+ VIG G GGL + RL+ +G FE+ GG
Sbjct: 1 MKTVVIGAGLGGLLSAARLS--KAGHEVEVFERLPITGG 37
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 32.0 bits (72), Expect = 0.93
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGG 48
V+G G+ GL+A +++ EQ+ + GG
Sbjct: 44 VVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGG 77
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 32.3 bits (73), Expect = 0.98
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 14 VIGGGAGGLTATKRLTEPGSGFTCTTFEQTDNVGGTWVYTEQTGRDQYGLPVH 66
++G G G L + E+ +++GG YTE D G+ +H
Sbjct: 6 IVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGGN-AYTE----DCEGIQIH 51
Score = 30.4 bits (68), Expect = 3.2
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)
Query: 748 GPGGLTATKRLTEAGNGFTCTTFEQADNIGGTWLYTEHIG---CDQYG 792
G G L + E+ ++IGG YTE +YG
Sbjct: 10 GLFGAVCANELKKLN--KKVLVIEKRNHIGGN-AYTEDCEGIQIHKYG 54
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 32.1 bits (74), Expect = 1.1
Identities = 30/214 (14%), Positives = 60/214 (28%), Gaps = 78/214 (36%)
Query: 523 YRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNKTITKRKKFDKGRNYN- 581
R + F K G+D + E T V + K + +
Sbjct: 96 ARNVKTFRDKY---------GIDAK--VRHEVTKVD----TEKKIVYAEHT-KTKDVFEF 139
Query: 582 -----------HPIYPEFKGKDMCQIPILHS-------RDY-RTPEPFAGKQAVVVGSG- 621
P+ PE++G+D+ + +L + T + + ++G G
Sbjct: 140 SYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKV---EDVTIIGGGA 196
Query: 622 ----------QSGLDITL-------------DIATRASTVFLSHHSERVTSLCLPNNVVL 658
+ G + + D+A HH + ++
Sbjct: 197 IGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHH---I-------EILT 246
Query: 659 KPDVAELTPTG----VRFQDGSYEQVDIILCCTG 688
+V V G+Y+ D++L G
Sbjct: 247 NENVKAFKGNERVEAVETDKGTYK-ADLVLVSVG 279
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 31.7 bits (73), Expect = 1.3
Identities = 25/208 (12%), Positives = 55/208 (26%), Gaps = 72/208 (34%)
Query: 523 YRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNKTITKRKKFDKGRNYNH 582
TPE F ++ + + E ++ + +T++ + +
Sbjct: 61 AYTPEKFYDRK---------QITVK--TYHEVIAIN----DERQTVSVLNR-KTNEQFEE 104
Query: 583 PIY----------PEFKGKDMCQIPILHS-------RDY-RTPEPFAGKQAVVVGSG--- 621
Y G + L + + + + + +VVG+G
Sbjct: 105 S-YDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQV---DKVLVVGAGYVS 160
Query: 622 --------QSGLDITL-------------DIATRASTVFLSHHSERVTSLCLPNNVVLKP 660
+ GL TL D+ + L
Sbjct: 161 LEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKRE---I-------PYRLNE 210
Query: 661 DVAELTPTGVRFQDGSYEQVDIILCCTG 688
++ + + F+ G E D+I+ G
Sbjct: 211 EINAINGNEITFKSGKVEHYDMIIEGVG 238
Score = 30.1 bits (69), Expect = 4.1
Identities = 16/100 (16%), Positives = 29/100 (29%), Gaps = 34/100 (34%)
Query: 893 KQAVVVGSG-----------QSGLDITL-------------DIATRASTVFLSHHSERVT 928
+ +VVG+G + GL TL D+ +
Sbjct: 149 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKRE---I- 204
Query: 929 SLCLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTG 968
L ++ + + F+ G E D+I+ G
Sbjct: 205 ------PYRLNEEINAINGNEITFKSGKVEHYDMIIEGVG 238
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI,
MCSG, structural genomics, midwest center for structural
genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Length = 451
Score = 31.8 bits (73), Expect = 1.4
Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 10/68 (14%)
Query: 610 FAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTG 669
F K+ +V+G +SG A+ L+ VT + P L G
Sbjct: 7 FENKKVLVLGLARSGE---------AAARLLAKLGAIVT-VNDGKPFDENPTAQSLLEEG 56
Query: 670 VRFQDGSY 677
++ GS+
Sbjct: 57 IKVVCGSH 64
Score = 30.6 bits (70), Expect = 3.2
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 18/103 (17%)
Query: 892 GKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVVLKPDVAELTPTGVR 951
K+ +V+G +SG A+ L+ VT + P L G++
Sbjct: 9 NKKVLVLGLARSGE---------AAARLLAKLGAIVT-VNDGKPFDENPTAQSLLEEGIK 58
Query: 952 FQDGSY------EQVDIILCCTGYSNHYPFLHE--SCGIKVVN 986
GS+ E ++ G + P + + I V+
Sbjct: 59 VVCGSHPLELLDEDFCYMIKNPGIPYNNPMVKKALEKQIPVLT 101
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 32.2 bits (73), Expect = 1.4
Identities = 35/185 (18%), Positives = 57/185 (30%), Gaps = 54/185 (29%)
Query: 529 FAGKRAVVVGSGPS--GLDITHD-ISTEATTVSAYLRFDNKTITKRKKFDKGRNYNHPIY 585
F K ++ G+G G ++ + A V RF + + + IY
Sbjct: 474 FKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFS----KQVTDYYQS------IY 523
Query: 586 PEF--KGKDMCQIPI-LHS-RD--------YRTPE------------PFAGKQAV-VVGS 620
++ KG + +P S +D Y T + PFA A+ G
Sbjct: 524 AKYGAKGSTLIVVPFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFA---AIPEQGI 580
Query: 621 GQSGLDITLDIATRASTV-------FLSHHSERVTSLCLPNNVVLKPDVAELTPTGVRF- 672
+D + A R + P V+L P ++P F
Sbjct: 581 ELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIETRPAQVIL-P----MSPNHGTFG 635
Query: 673 QDGSY 677
DG Y
Sbjct: 636 GDGMY 640
Score = 31.4 bits (71), Expect = 2.2
Identities = 14/85 (16%), Positives = 25/85 (29%), Gaps = 21/85 (24%)
Query: 839 HPIYPEFKGKDMCQIPI-LHSRDYRTPE-------PF------AGKQAVVVGSGQSGLDI 884
P F QIP +++ Y + P + +A + SG+
Sbjct: 976 IPKALRFDRLVAGQIPTGWNAKTYGISDDIISQVDPITLFVLVSVVEAFI----ASGITD 1031
Query: 885 TLDIATTGKQ---AVVVGSGQSGLD 906
++ GSG G+
Sbjct: 1032 PYEMYKYVHVSEVGNCSGSGMGGVS 1056
>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin,
bacteroides F oxidoreductase; HET: FAD; 2.09A
{Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A*
2y6r_A* 3p9u_A*
Length = 398
Score = 31.6 bits (72), Expect = 1.6
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 6 TSPTLHIGVIGGGAGGLTATKRLTEPGSGFTCTTFEQ 42
++ +IGGG GLT K L + +G + +E+
Sbjct: 23 LLSDKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYER 57
>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266,
NESG, PAR240, structural genomics, PSI-2; HET: FAD;
1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2
d.16.1.2 PDB: 2rgj_A*
Length = 410
Score = 30.7 bits (70), Expect = 3.1
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 7 SPTLHIGVIGGGAGGLTA 24
S + I + G G GGL+
Sbjct: 2 SEPIDILIAGAGIGGLSC 19
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 30.5 bits (69), Expect = 3.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Query: 11 HIGVIGGGAGGLTATKRL 28
H+ ++G G GG+ A +
Sbjct: 6 HVVILGAGTGGMPAAYEM 23
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 30.6 bits (70), Expect = 3.1
Identities = 9/85 (10%), Positives = 27/85 (31%), Gaps = 11/85 (12%)
Query: 610 FAGKQAVVVGSGQSG-LDITLDIATRASTVFLSHHSERVTS-----LCLPNNVVLKPDVA 663
+ +++ + L +T + ++ + ++ + ++ L N V+ +
Sbjct: 144 LKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATNGNELSQTIMDELSNKNIPVITESIR 203
Query: 664 ELT-----PTGVRFQDGSYEQVDII 683
L V F G +
Sbjct: 204 TLQGEGGYLKKVEFHSGLRIERAGG 228
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 30.6 bits (70), Expect = 3.5
Identities = 25/124 (20%), Positives = 35/124 (28%), Gaps = 33/124 (26%)
Query: 14 VIGGGAGGLTATKRLTEPG-------SGFTCTTFEQTDNVGGTWV-----------YTEQ 55
VIGGG+ GL K G T VGGT V
Sbjct: 14 VIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASL 73
Query: 56 TGRD-----QYGLPVHSSM---YKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYL 107
G YG V + + L ++ I ++ + + V EY+
Sbjct: 74 LGEAVHEAAAYGWNVDDKIKPDWHKLVQSVQNHIKSVNWVT------RVDLRDKKV-EYI 126
Query: 108 NDFA 111
N
Sbjct: 127 NGLG 130
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 30.5 bits (69), Expect = 3.8
Identities = 9/18 (50%), Positives = 11/18 (61%)
Query: 11 HIGVIGGGAGGLTATKRL 28
H+ VIGGG GG+ L
Sbjct: 4 HVVVIGGGVGGIATAYNL 21
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 30.3 bits (69), Expect = 4.3
Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 32/123 (26%)
Query: 14 VIGGGAGGLTATKRLTEPGS------GFTCTTFEQTDNVGGTWV-----------YTEQT 56
+IGGG+GGL A K + G T T +GGT V
Sbjct: 37 IIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALL 96
Query: 57 GRD-----QYGLPVHSSM---YKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYLN 108
G+ YG V ++ + + + I L+ + + + V Y N
Sbjct: 97 GQALQDSRNYGWKVEETVKHDWDRMIEAVQNHIGSLNWGY------RVALREKKV-VYEN 149
Query: 109 DFA 111
+
Sbjct: 150 AYG 152
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 29.9 bits (68), Expect = 4.7
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 11/106 (10%)
Query: 868 AGKQAVVVGSGQSGLDITLDIATT----GKQAVVVGSGQSGLDITLDIATRASTVFLSHH 923
A + VV+G G I L++A T ++ + L+ A S + H
Sbjct: 148 ADNRLVVIGGGY----IGLEVAATAIKANMHVTLLDTAARVLERVT--APPVSAFYEHLH 201
Query: 924 SERVTSLCLPNNVV-LKPDVAELTPTGVRFQDGSYEQVDIILCCTG 968
E + V + + T V +DG+ D+++ G
Sbjct: 202 REAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 247
Score = 29.9 bits (68), Expect = 5.4
Identities = 20/100 (20%), Positives = 35/100 (35%), Gaps = 22/100 (22%)
Query: 611 AGKQAVVVGSG-----------QSGLDIT-LDIATR---------ASTVFLSHHSERVTS 649
A + VV+G G ++ + +T LD A R S + H E
Sbjct: 148 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVD 207
Query: 650 LCLPNNVV-LKPDVAELTPTGVRFQDGSYEQVDIILCCTG 688
+ V + + T V +DG+ D+++ G
Sbjct: 208 IRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 247
>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative
II(PSI II), NYSGXRC, structural genomics; 1.79A
{Cytophaga hutchinsonii atcc 33406}
Length = 634
Score = 29.9 bits (68), Expect = 5.2
Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 5/55 (9%)
Query: 283 TTVF-LSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQD----GSYEQVDIILY 332
+ +E + + V K AEL P+ D Y+ + I
Sbjct: 489 DFIRSWLRWAEKNRNQHGLHIVNKLAPTAELRPSEYTQTDERDLMPYDVLARIER 543
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 30.0 bits (68), Expect = 5.8
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 610 FAGKQAVVVGSGQSGLDITLDIATRASTVFLSH 642
F GK+ V+G G SG++ +D+A V L
Sbjct: 353 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 385
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 29.9 bits (68), Expect = 6.4
Identities = 29/223 (13%), Positives = 53/223 (23%), Gaps = 76/223 (34%)
Query: 523 YRTPEPFAGKRAVVVGSGPSGLDITHDISTEATTVSAYLRFDNKTITKRKKFDKGRNYN- 581
+TPE F + +++ + E + K +T R+ G Y
Sbjct: 61 LQTPESFKARF---------NVEVR--VKHEVVAID----RAAKLVTVRRL-LDGSEYQE 104
Query: 582 -----------HPIYPEFKGKDMCQIPILHS-------RDY-RTPEPFAGKQAVVVGSG- 621
PI P G D L + + + A VVG G
Sbjct: 105 SYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNV---EHATVVGGGF 161
Query: 622 ----------QSGLDITL-------------DIATRASTVFLSHH-----SERVTSL--- 650
G+ TL ++A A ++ +
Sbjct: 162 IGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQ 221
Query: 651 -----CLPNNVVLKPDVAELTPTGVRFQDGSYEQVDIILCCTG 688
+ +G + D+++ G
Sbjct: 222 VQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIG 264
>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET:
DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB:
1xnh_A
Length = 268
Score = 29.1 bits (66), Expect = 8.1
Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 11/60 (18%)
Query: 283 TTVF-LSHHSEHVKKLRFPNNVVKKPDIAELTPTGVRFQD---GSYEQVDIILYCTGYTY 338
T V+ L+ L P ++ KP A+L G + Y +D +L +
Sbjct: 162 TEVYELARR------LNIPKKILNKPPSADLFV-GQSDEKDLGYPYSVIDPLLKDIEALF 214
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell
cycle, cell division, cell shape, cell WAL
biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia
coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A*
2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A*
2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Length = 439
Score = 29.0 bits (66), Expect = 8.6
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 19/76 (25%)
Query: 610 FAGKQAVVVGSGQSGLDITLDIATRASTVFLSHHSERVTSLCLPNNVV---LKPDVAELT 666
+ GK V++G G +GL + F V+ + P +
Sbjct: 3 YQGKNVVIIGLGLTGL---------SCVDFFLARGVTPR-------VMDTRMTPPGLDKL 46
Query: 667 PTGVRFQDGSYEQVDI 682
P V GS +
Sbjct: 47 PEAVERHTGSLNDEWL 62
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 29.2 bits (66), Expect = 8.8
Identities = 27/124 (21%), Positives = 40/124 (32%), Gaps = 33/124 (26%)
Query: 14 VIGGGAGGLTATKRLTEPGS------GFTCTTFEQTDNVGGTWV-----------YTEQT 56
VIGGG+GGL A K + G+ T T +GGT V
Sbjct: 112 VIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLL 171
Query: 57 GRD-----QYGLPVHSSM----YKSLKTNLPKEIMELSGYHHKGHPDKSYIAANDVLEYL 107
+G + S + ++ + I L+ + K + N V YL
Sbjct: 172 SHALEDAEHFGWSLDRSKISHNWSTMVEGVQSHIGSLNWGY------KVALRDNQV-TYL 224
Query: 108 NDFA 111
N
Sbjct: 225 NAKG 228
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 29.3 bits (65), Expect = 9.1
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 859 RDYRTPEPFAGKQAVVVGSGQSGLDITLDIATTGKQAVVV 898
Y+ + + +VVG+G GL +++A G + V+V
Sbjct: 82 PVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGARVVLV 121
>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo
sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A*
2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A*
3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A*
3kqm_A* 3kqo_A* 3kqp_A* ...
Length = 289
Score = 29.0 bits (64), Expect = 9.3
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 498 NYSNPVYPDFKGKDVCQIPIMHSHEYRTPEPFAGKRAVVVGSGPS 542
NY+ P V + + +G+ + +GSGP+
Sbjct: 39 NYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPT 83
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.138 0.423
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,868,011
Number of extensions: 1122998
Number of successful extensions: 3472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3379
Number of HSP's successfully gapped: 202
Length of query: 1129
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1025
Effective length of database: 3,798,009
Effective search space: 3892959225
Effective search space used: 3892959225
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)