BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy12355
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf
Whitefly
Length = 352
Score = 140 bits (353), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 66/108 (61%), Positives = 82/108 (75%)
Query: 5 LDPLGTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDA 64
+D G E C+T+GIN+T QMV+VPLVNACA+EIDI S FRY NDYP A
Sbjct: 245 IDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIA 304
Query: 65 LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG 112
LEMVASG+C V++L+TH+FKLE+ V+AF+ A KKAD+TIK+MI CRQG
Sbjct: 305 LEMVASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQG 352
>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase
Length = 355
Score = 78.6 bits (192), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 41/101 (40%), Positives = 57/101 (56%), Gaps = 2/101 (1%)
Query: 9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
G E + GI T +M SVPLV+A +E+DI FRY N +P A+ M+
Sbjct: 250 GVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATREVDIKGVFRYCNTWPMAISML 309
Query: 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
AS V+ L+TH F LE+A+EAF+T+ K +K+MI C
Sbjct: 310 ASKSVNVKPLVTHRFPLEKALEAFETSKKGLG--LKVMIKC 348
>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|B Chain B, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|C Chain C, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL7|D Chain D, Human Sorbitol Dehydrogenase (Apo)
pdb|1PL8|A Chain A, Human SdhNAD+ COMPLEX
pdb|1PL8|B Chain B, Human SdhNAD+ COMPLEX
pdb|1PL8|C Chain C, Human SdhNAD+ COMPLEX
pdb|1PL8|D Chain D, Human SdhNAD+ COMPLEX
Length = 356
Score = 73.6 bits (179), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 2/101 (1%)
Query: 9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
G E + GI T +M +VPL++A +E+DI FRY N +P A+ M+
Sbjct: 251 GAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISML 310
Query: 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
AS V+ L+TH F LE+A+EAF+T K +KIM+ C
Sbjct: 311 ASKSVNVKPLVTHRFPLEKALEAFETFKKGLG--LKIMLKC 349
>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|B Chain B, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|C Chain C, Human SdhNADHINHIBITOR COMPLEX
pdb|1PL6|D Chain D, Human SdhNADHINHIBITOR COMPLEX
Length = 356
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 9 GTENCLTLGINVTXXXXXXXXXXXXPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
G E + GI T + +VPL++A +E+DI FRY N +P A+ +
Sbjct: 251 GAEASIQAGIYATRSGGTLVLVGLGSEXTTVPLLHAAIREVDIKGVFRYCNTWPVAISXL 310
Query: 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
AS V+ L+TH F LE+A+EAF+T K +KI + C
Sbjct: 311 ASKSVNVKPLVTHRFPLEKALEAFETFKKGLG--LKIXLKC 349
>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase
pdb|3M6I|B Chain B, L-Arabinitol 4-Dehydrogenase
Length = 363
Score = 61.2 bits (147), Expect = 1e-10, Method: Composition-based stats.
Identities = 26/72 (36%), Positives = 45/72 (62%)
Query: 37 VSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTAS 96
+ +P + A +E+D+ +RY N +P A+ +V +G + +L+TH F LE+A++AF+TAS
Sbjct: 289 IQIPFMRASVREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHRFPLEDALKAFETAS 348
Query: 97 KKADDTIKIMIH 108
IK+ I
Sbjct: 349 DPKTGAIKVQIQ 360
>pdb|4ILK|A Chain A, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
pdb|4ILK|B Chain B, Crystal Structure Of Short Chain Alcohol Dehydrogenase
(rspb) From E. Coli Cft073 (efi Target Efi-506413)
Complexed With Cofactor Nadh
Length = 359
Score = 30.0 bits (66), Expect = 0.30, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 46 AKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEA 91
KE+ I S N +P ++ ++ G KLITH F + +A
Sbjct: 294 GKELSIFSSRLNANKFPVVIDWLSKGLIKPEKLITHTFDFQHVADA 339
>pdb|1Y9A|A Chain A, Alcohol Dehydrogenase From Entamoeba Histolotica In
Complex With Cacodylate
pdb|1Y9A|C Chain C, Alcohol Dehydrogenase From Entamoeba Histolotica In
Complex With Cacodylate
Length = 360
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 67 MVASGKCPVRKLITHNFK-LEEAVEAFKTASKKADDTIK--IMIH 108
++++GK KLITH F+ LE+ +A K D IK + IH
Sbjct: 308 LISTGKLDTSKLITHRFEGLEKVEDALMLMKNKPADLIKPVVRIH 352
>pdb|2OUI|A Chain A, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|B Chain B, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|C Chain C, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
pdb|2OUI|D Chain D, D275p Mutant Of Alcohol Dehydrogenase From Protozoa
Entamoeba Histolytica
Length = 360
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 67 MVASGKCPVRKLITHNFK-LEEAVEAFKTASKKADDTIK--IMIH 108
++++GK KLITH F+ LE+ +A K D IK + IH
Sbjct: 308 LISTGKLDTSKLITHRFEGLEKVEDALMLMKNKPADLIKPVVRIH 352
>pdb|1WS9|A Chain A, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|1WS9|B Chain B, Crystal Structure Of Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2CX9|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|C Chain C, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2CX9|D Chain D, Crystal Structure Of Acyl-Coa Dehydrogenase
pdb|2D29|A Chain A, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
pdb|2D29|B Chain B, Structural Study On Project Id Tt0172 From Thermus
Thermophilus Hb8
Length = 387
Score = 28.5 bits (62), Expect = 0.90, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 8/55 (14%)
Query: 42 VNACAKEIDILSCFRYVNDYP------DA-LEMVASGKCPVRKLITHNFKLEEAV 89
V AC + I IL + YV DYP DA L + G + KL+ +L EAV
Sbjct: 334 VKACDEAIQILGGYGYVKDYPVERYWRDARLTRIGEGTSEILKLVIAR-RLLEAV 387
>pdb|2PNZ|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Udp And Gmp
pdb|2PO0|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Adp In Double Conformation
pdb|2PO1|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With A Single Stranded 10-Mer Poly(A) Rna
pdb|2PO2|B Chain B, Crystal Structure Of The P. Abyssi Exosome Rnase Ph Ring
Complexed With Cdp
Length = 277
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 83 FKLEEAVEAFKTASKKADDTIKIMIHC 109
FKLEE + A +TA KKA++ K+++
Sbjct: 245 FKLEEVMYAVETAFKKAEEIRKLILEA 271
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,701,862
Number of Sequences: 62578
Number of extensions: 78495
Number of successful extensions: 171
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 161
Number of HSP's gapped (non-prelim): 11
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)