Query psy12355
Match_columns 112
No_of_seqs 106 out of 1605
Neff 10.3
Searched_HMMs 46136
Date Fri Aug 16 16:55:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12355.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/12355hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0024|consensus 99.9 1.2E-21 2.5E-26 128.0 11.6 110 1-110 243-353 (354)
2 PRK09880 L-idonate 5-dehydroge 99.8 5.9E-20 1.3E-24 123.3 12.0 108 1-109 236-343 (343)
3 TIGR01202 bchC 2-desacetyl-2-h 99.8 4.1E-20 8.9E-25 122.6 10.8 107 1-108 201-308 (308)
4 COG1064 AdhP Zn-dependent alco 99.8 5E-19 1.1E-23 117.6 10.8 106 1-110 230-338 (339)
5 COG1063 Tdh Threonine dehydrog 99.8 6.7E-19 1.4E-23 118.7 11.6 109 1-109 239-350 (350)
6 PRK10309 galactitol-1-phosphat 99.8 6.1E-18 1.3E-22 113.6 11.5 108 1-109 229-346 (347)
7 COG1062 AdhC Zn-dependent alco 99.8 4.5E-18 9.7E-23 112.1 9.5 106 1-109 255-366 (366)
8 cd08239 THR_DH_like L-threonin 99.8 1.4E-17 3.1E-22 111.5 11.5 106 1-109 232-339 (339)
9 PLN02178 cinnamyl-alcohol dehy 99.8 1.3E-17 2.9E-22 113.3 11.3 105 1-109 243-348 (375)
10 PLN02827 Alcohol dehydrogenase 99.8 1.9E-17 4.2E-22 112.6 11.6 108 1-110 264-377 (378)
11 TIGR03201 dearomat_had 6-hydro 99.8 1.9E-17 4E-22 111.5 11.4 105 2-108 243-348 (349)
12 cd08237 ribitol-5-phosphate_DH 99.8 1.1E-17 2.3E-22 112.5 10.0 108 1-110 223-340 (341)
13 cd08281 liver_ADH_like1 Zinc-d 99.8 1.4E-17 3E-22 113.0 10.5 105 1-106 260-370 (371)
14 TIGR03451 mycoS_dep_FDH mycoth 99.7 2.7E-17 5.9E-22 111.0 11.2 106 1-108 246-357 (358)
15 cd08238 sorbose_phosphate_red 99.7 3.1E-17 6.8E-22 112.6 11.0 108 1-110 258-369 (410)
16 PLN02514 cinnamyl-alcohol dehy 99.7 5.5E-17 1.2E-21 109.6 11.7 107 1-111 245-352 (357)
17 PLN02586 probable cinnamyl alc 99.7 6.1E-17 1.3E-21 109.5 11.3 105 1-109 248-353 (360)
18 cd08233 butanediol_DH_like (2R 99.7 8.4E-17 1.8E-21 108.2 11.8 108 1-108 242-351 (351)
19 cd08230 glucose_DH Glucose deh 99.7 1.4E-16 3E-21 107.4 10.5 106 1-109 239-355 (355)
20 TIGR02819 fdhA_non_GSH formald 99.7 1.5E-16 3.3E-21 108.8 10.5 108 1-110 255-391 (393)
21 PLN02740 Alcohol dehydrogenase 99.7 3E-16 6.5E-21 106.8 11.1 105 1-108 269-380 (381)
22 TIGR02822 adh_fam_2 zinc-bindi 99.7 9.3E-16 2E-20 102.7 10.9 103 1-107 224-328 (329)
23 PRK10083 putative oxidoreducta 99.7 3.1E-15 6.8E-20 100.1 11.8 111 1-111 229-339 (339)
24 TIGR02818 adh_III_F_hyde S-(hy 99.7 3.1E-15 6.7E-20 101.5 11.4 106 1-109 256-368 (368)
25 cd08301 alcohol_DH_plants Plan 99.7 2.4E-15 5.2E-20 101.9 10.8 104 1-107 258-368 (369)
26 cd08277 liver_alcohol_DH_like 99.6 3E-15 6.4E-20 101.4 11.1 105 1-108 255-365 (365)
27 PLN03154 putative allyl alcoho 99.6 1.8E-15 4E-20 102.0 9.9 107 1-111 229-347 (348)
28 cd08300 alcohol_DH_class_III c 99.6 1E-14 2.2E-19 98.9 11.0 105 1-108 257-368 (368)
29 KOG0023|consensus 99.6 5.6E-15 1.2E-19 96.9 9.3 105 2-110 248-355 (360)
30 cd08231 MDR_TM0436_like Hypoth 99.6 1.2E-14 2.6E-19 98.2 11.0 107 1-109 250-361 (361)
31 PF13602 ADH_zinc_N_2: Zinc-bi 99.6 2.9E-16 6.2E-21 92.0 2.5 98 1-107 20-127 (127)
32 KOG0022|consensus 99.6 2.2E-14 4.7E-19 94.1 10.0 105 1-108 263-374 (375)
33 cd08242 MDR_like Medium chain 99.6 8.7E-14 1.9E-18 92.4 11.4 105 1-109 215-319 (319)
34 TIGR03366 HpnZ_proposed putati 99.6 1.1E-14 2.4E-19 95.5 6.5 88 1-88 188-280 (280)
35 PLN02702 L-idonate 5-dehydroge 99.5 2E-13 4.3E-18 92.4 11.4 107 1-108 255-363 (364)
36 cd08286 FDH_like_ADH2 formalde 99.5 2E-13 4.4E-18 91.6 11.4 109 1-109 236-345 (345)
37 cd08285 NADP_ADH NADP(H)-depen 99.5 3.7E-13 7.9E-18 90.7 11.6 109 1-109 236-351 (351)
38 cd08232 idonate-5-DH L-idonate 99.5 4.9E-13 1.1E-17 89.5 11.7 108 1-109 232-339 (339)
39 cd08291 ETR_like_1 2-enoyl thi 99.5 2.7E-13 5.9E-18 90.4 10.3 103 1-108 213-324 (324)
40 cd08296 CAD_like Cinnamyl alco 99.5 4.9E-13 1.1E-17 89.5 10.9 104 1-108 229-333 (333)
41 cd08283 FDH_like_1 Glutathione 99.5 5.7E-13 1.2E-17 91.0 11.1 109 1-109 255-386 (386)
42 cd05283 CAD1 Cinnamyl alcohol 99.5 5.7E-13 1.2E-17 89.3 10.1 104 1-108 233-337 (337)
43 cd08256 Zn_ADH2 Alcohol dehydr 99.5 7.2E-13 1.6E-17 89.2 10.6 106 1-107 244-350 (350)
44 cd05285 sorbitol_DH Sorbitol d 99.5 1.2E-12 2.5E-17 88.0 11.3 107 1-107 235-341 (343)
45 cd08287 FDH_like_ADH3 formalde 99.5 1.1E-12 2.4E-17 88.0 10.9 107 1-109 238-345 (345)
46 cd08262 Zn_ADH8 Alcohol dehydr 99.5 1.4E-12 3E-17 87.4 11.2 107 1-108 234-341 (341)
47 PF00107 ADH_zinc_N: Zinc-bind 99.5 1.5E-13 3.2E-18 80.7 5.5 70 1-70 59-130 (130)
48 TIGR00692 tdh L-threonine 3-de 99.4 2.6E-12 5.7E-17 86.2 11.3 107 1-109 231-340 (340)
49 PRK05396 tdh L-threonine 3-deh 99.4 3.1E-12 6.6E-17 85.9 11.6 107 1-110 233-341 (341)
50 KOG1197|consensus 99.4 3.8E-13 8.2E-18 86.2 6.6 107 1-111 216-332 (336)
51 COG0604 Qor NADPH:quinone redu 99.4 2.3E-12 5.1E-17 86.4 10.8 105 1-109 212-326 (326)
52 cd08295 double_bond_reductase_ 99.4 1.8E-12 4E-17 86.9 9.9 105 1-109 222-338 (338)
53 cd08254 hydroxyacyl_CoA_DH 6-h 99.4 4.9E-12 1.1E-16 84.4 11.0 105 1-109 233-338 (338)
54 cd08284 FDH_like_2 Glutathione 99.4 5.6E-12 1.2E-16 84.5 11.1 106 1-108 236-343 (344)
55 cd08269 Zn_ADH9 Alcohol dehydr 99.4 7.1E-12 1.5E-16 82.8 11.3 107 1-107 199-311 (312)
56 cd05279 Zn_ADH1 Liver alcohol 99.4 5.4E-12 1.2E-16 85.6 10.8 105 1-108 254-365 (365)
57 cd05281 TDH Threonine dehydrog 99.4 9.6E-12 2.1E-16 83.5 11.3 107 1-109 232-341 (341)
58 cd08265 Zn_ADH3 Alcohol dehydr 99.4 9E-12 1.9E-16 85.1 11.3 105 1-107 276-383 (384)
59 cd08274 MDR9 Medium chain dehy 99.4 6.3E-12 1.4E-16 84.4 10.4 105 1-109 244-350 (350)
60 TIGR02825 B4_12hDH leukotriene 99.4 3.5E-12 7.5E-17 85.1 9.1 103 1-107 208-324 (325)
61 cd08263 Zn_ADH10 Alcohol dehyd 99.4 8E-12 1.7E-16 84.7 10.6 106 1-107 257-366 (367)
62 cd00401 AdoHcyase S-adenosyl-L 99.4 2.1E-12 4.6E-17 88.6 7.8 108 1-110 258-377 (413)
63 cd08240 6_hydroxyhexanoate_dh_ 99.4 9.7E-12 2.1E-16 83.7 10.8 106 1-109 244-350 (350)
64 cd08260 Zn_ADH6 Alcohol dehydr 99.4 8.5E-12 1.8E-16 83.8 10.5 107 1-108 234-344 (345)
65 cd08246 crotonyl_coA_red croto 99.4 6.4E-12 1.4E-16 85.9 10.0 104 1-108 286-392 (393)
66 cd08278 benzyl_alcohol_DH Benz 99.4 9.4E-12 2E-16 84.4 10.7 105 1-108 255-365 (365)
67 cd05284 arabinose_DH_like D-ar 99.4 1.4E-11 3E-16 82.5 11.1 104 1-109 236-340 (340)
68 cd08261 Zn_ADH7 Alcohol dehydr 99.4 1.9E-11 4.2E-16 81.8 11.7 109 1-109 228-337 (337)
69 cd08234 threonine_DH_like L-th 99.3 2.8E-11 6.1E-16 80.8 10.9 105 1-107 227-333 (334)
70 cd08235 iditol_2_DH_like L-idi 99.3 3.7E-11 8.1E-16 80.5 11.3 106 1-108 235-343 (343)
71 cd08282 PFDH_like Pseudomonas 99.3 3E-11 6.6E-16 82.2 10.7 107 1-109 244-375 (375)
72 cd08294 leukotriene_B4_DH_like 99.3 2.1E-11 4.6E-16 81.2 9.8 105 1-109 212-329 (329)
73 TIGR01751 crot-CoA-red crotony 99.3 2.5E-11 5.4E-16 83.3 10.2 105 1-109 281-387 (398)
74 PRK13771 putative alcohol dehy 99.3 5.3E-11 1.2E-15 79.5 10.9 105 1-109 226-333 (334)
75 cd08236 sugar_DH NAD(P)-depend 99.3 6E-11 1.3E-15 79.6 11.0 107 1-107 228-343 (343)
76 cd08270 MDR4 Medium chain dehy 99.3 4.5E-11 9.7E-16 78.8 10.2 105 1-109 193-305 (305)
77 cd08292 ETR_like_2 2-enoyl thi 99.3 4.3E-11 9.3E-16 79.5 9.9 103 1-107 209-323 (324)
78 cd05278 FDH_like Formaldehyde 99.3 8.7E-11 1.9E-15 78.8 11.1 109 1-109 237-347 (347)
79 cd08297 CAD3 Cinnamyl alcohol 99.3 8.4E-11 1.8E-15 78.8 10.9 105 1-109 235-341 (341)
80 cd08279 Zn_ADH_class_III Class 99.3 1.2E-10 2.5E-15 79.0 11.6 105 1-107 252-362 (363)
81 cd08299 alcohol_DH_class_I_II_ 99.3 1.2E-10 2.5E-15 79.4 11.0 106 1-109 261-373 (373)
82 PRK09422 ethanol-active dehydr 99.3 1.9E-10 4.2E-15 77.0 11.3 106 1-110 231-337 (338)
83 cd08244 MDR_enoyl_red Possible 99.2 2.3E-10 5.1E-15 75.9 10.6 105 1-109 212-324 (324)
84 cd08255 2-desacetyl-2-hydroxye 99.2 5E-10 1.1E-14 73.1 10.6 105 1-107 160-277 (277)
85 TIGR02823 oxido_YhdH putative 99.2 7.6E-10 1.7E-14 73.6 11.3 103 1-108 212-322 (323)
86 cd08289 MDR_yhfp_like Yhfp put 99.2 7.1E-10 1.5E-14 73.8 10.4 106 1-109 214-326 (326)
87 cd08293 PTGR2 Prostaglandin re 99.2 1.1E-09 2.4E-14 73.6 11.3 105 1-109 225-345 (345)
88 cd05280 MDR_yhdh_yhfp Yhdh and 99.2 6.8E-10 1.5E-14 73.8 10.1 103 1-108 214-324 (325)
89 cd08276 MDR7 Medium chain dehy 99.1 1.2E-09 2.6E-14 72.8 10.8 104 1-108 230-335 (336)
90 cd08245 CAD Cinnamyl alcohol d 99.1 9.2E-10 2E-14 73.5 10.0 103 1-107 226-330 (330)
91 cd08266 Zn_ADH_like1 Alcohol d 99.1 1.3E-09 2.8E-14 72.6 10.7 105 1-109 236-342 (342)
92 COG2130 Putative NADP-dependen 99.1 4.6E-10 1E-14 73.7 8.0 106 1-110 220-339 (340)
93 cd08298 CAD2 Cinnamyl alcohol 99.1 1.1E-09 2.4E-14 73.1 10.0 102 1-107 226-329 (329)
94 cd08259 Zn_ADH5 Alcohol dehydr 99.1 1.5E-09 3.3E-14 72.2 10.5 104 1-108 227-332 (332)
95 PRK10754 quinone oxidoreductas 99.1 5E-10 1.1E-14 74.7 8.2 107 1-109 210-327 (327)
96 cd05282 ETR_like 2-enoyl thioe 99.1 1.8E-09 3.9E-14 71.7 10.5 104 1-108 208-323 (323)
97 cd08290 ETR 2-enoyl thioester 99.1 1.6E-09 3.5E-14 72.6 10.4 104 1-108 222-340 (341)
98 KOG0025|consensus 99.1 9E-10 1.9E-14 72.0 8.6 106 2-110 235-353 (354)
99 KOG1198|consensus 99.1 4.3E-10 9.2E-15 76.1 7.4 106 1-110 226-346 (347)
100 PTZ00354 alcohol dehydrogenase 99.1 1.9E-09 4.1E-14 71.8 10.4 107 1-111 211-330 (334)
101 cd08264 Zn_ADH_like2 Alcohol d 99.1 1E-09 2.2E-14 73.1 8.8 99 1-105 224-324 (325)
102 KOG1202|consensus 99.1 4.4E-10 9.5E-15 84.5 6.7 109 1-111 1626-1743(2376)
103 cd05288 PGDH Prostaglandin deh 99.1 1.8E-09 3.9E-14 72.0 9.1 103 1-107 215-329 (329)
104 cd08250 Mgc45594_like Mgc45594 99.0 4.1E-09 8.8E-14 70.3 8.9 105 1-108 208-329 (329)
105 cd08252 AL_MDR Arginate lyase 99.0 6.4E-09 1.4E-13 69.5 9.6 104 1-107 218-335 (336)
106 cd05286 QOR2 Quinone oxidoredu 99.0 2.2E-08 4.7E-13 65.9 11.2 105 1-109 206-320 (320)
107 cd08243 quinone_oxidoreductase 99.0 8.8E-09 1.9E-13 68.1 9.3 103 1-107 209-319 (320)
108 cd05276 p53_inducible_oxidored 98.9 3E-08 6.5E-13 65.3 10.4 103 1-107 209-323 (323)
109 cd08249 enoyl_reductase_like e 98.9 3E-08 6.5E-13 66.7 9.8 105 1-108 222-338 (339)
110 cd08258 Zn_ADH4 Alcohol dehydr 98.9 1.4E-08 3E-13 67.5 8.0 71 1-71 234-306 (306)
111 cd08241 QOR1 Quinone oxidoredu 98.9 3.9E-08 8.5E-13 64.8 9.6 103 1-107 209-322 (323)
112 cd08253 zeta_crystallin Zeta-c 98.8 6.3E-08 1.4E-12 63.9 10.1 104 1-108 214-324 (325)
113 cd05289 MDR_like_2 alcohol deh 98.8 2E-08 4.3E-13 65.9 7.6 99 1-107 209-309 (309)
114 cd08273 MDR8 Medium chain dehy 98.8 4.4E-08 9.5E-13 65.3 9.3 103 1-107 204-330 (331)
115 cd08275 MDR3 Medium chain dehy 98.8 1.4E-07 2.9E-12 62.9 11.2 105 1-109 207-337 (337)
116 TIGR02817 adh_fam_1 zinc-bindi 98.8 8.1E-08 1.7E-12 64.3 10.1 102 1-108 217-334 (336)
117 cd08288 MDR_yhdh Yhdh putative 98.8 1E-07 2.3E-12 63.4 10.2 103 1-108 213-323 (324)
118 cd08272 MDR6 Medium chain dehy 98.8 1.2E-07 2.7E-12 62.7 10.3 102 1-109 212-326 (326)
119 TIGR02824 quinone_pig3 putativ 98.8 1.5E-07 3.3E-12 62.1 10.7 104 1-108 209-324 (325)
120 cd08247 AST1_like AST1 is a cy 98.7 1.3E-07 2.9E-12 63.8 9.3 105 1-108 226-351 (352)
121 cd08268 MDR2 Medium chain dehy 98.7 3.3E-07 7.2E-12 60.6 10.5 105 1-109 214-328 (328)
122 KOG1196|consensus 98.7 1.5E-07 3.2E-12 62.0 7.1 106 1-110 224-341 (343)
123 cd08248 RTN4I1 Human Reticulon 98.7 2.5E-07 5.4E-12 62.2 8.4 103 1-107 228-349 (350)
124 smart00829 PKS_ER Enoylreducta 98.6 4E-07 8.8E-12 59.0 8.8 102 1-107 176-288 (288)
125 cd05195 enoyl_red enoyl reduct 98.6 4E-07 8.7E-12 59.1 8.7 102 1-107 180-293 (293)
126 cd08267 MDR1 Medium chain dehy 98.6 5.1E-07 1.1E-11 59.7 8.9 104 1-107 209-319 (319)
127 cd08271 MDR5 Medium chain dehy 98.6 5.7E-07 1.2E-11 59.6 8.6 105 1-109 210-325 (325)
128 PRK09424 pntA NAD(P) transhydr 98.5 5.5E-07 1.2E-11 63.8 6.3 80 1-80 249-339 (509)
129 cd08251 polyketide_synthase po 98.5 8.2E-07 1.8E-11 58.2 6.8 103 1-107 190-303 (303)
130 cd05188 MDR Medium chain reduc 98.2 1.3E-05 2.8E-10 51.7 7.0 67 1-67 202-270 (271)
131 PRK11873 arsM arsenite S-adeno 97.8 9.9E-05 2.1E-09 48.5 6.9 96 1-99 147-252 (272)
132 PRK05476 S-adenosyl-L-homocyst 95.2 0.043 9.3E-07 38.7 4.4 39 1-39 268-307 (425)
133 TIGR00936 ahcY adenosylhomocys 93.2 0.19 4.2E-06 35.3 4.3 34 1-34 251-285 (406)
134 TIGR00561 pntA NAD(P) transhyd 92.7 0.5 1.1E-05 34.3 5.9 57 1-57 248-314 (511)
135 TIGR01532 E4PD_g-proteo D-eryt 92.4 0.21 4.6E-06 34.1 3.6 34 1-34 90-123 (325)
136 PLN02494 adenosylhomocysteinas 92.3 0.2 4.4E-06 35.9 3.5 35 1-35 310-345 (477)
137 PRK08306 dipicolinate synthase 92.1 1.5 3.2E-05 29.6 7.3 53 1-55 211-263 (296)
138 PF00044 Gp_dh_N: Glyceraldehy 91.3 0.22 4.8E-06 30.2 2.5 35 1-35 89-123 (151)
139 COG2518 Pcm Protein-L-isoaspar 91.1 0.24 5.1E-06 31.7 2.6 30 1-30 139-168 (209)
140 smart00846 Gp_dh_N Glyceraldeh 91.0 0.33 7.1E-06 29.3 3.0 35 1-35 88-122 (149)
141 PF03447 NAD_binding_3: Homose 89.1 0.96 2.1E-05 25.8 3.8 30 1-30 60-89 (117)
142 PRK13942 protein-L-isoaspartat 88.8 0.75 1.6E-05 29.3 3.5 30 1-30 146-175 (212)
143 TIGR00438 rrmJ cell division p 88.8 1.1 2.4E-05 27.8 4.2 21 12-32 127-147 (188)
144 PRK12771 putative glutamate sy 88.4 0.031 6.7E-07 40.6 -3.3 54 1-55 223-276 (564)
145 PRK13943 protein-L-isoaspartat 88.1 1 2.3E-05 30.7 4.0 30 1-30 150-179 (322)
146 PLN02358 glyceraldehyde-3-phos 87.8 1.2 2.5E-05 30.8 4.1 35 1-35 96-130 (338)
147 PTZ00075 Adenosylhomocysteinas 87.6 0.47 1E-05 34.1 2.2 35 1-35 310-345 (476)
148 PF01135 PCMT: Protein-L-isoas 87.5 0.41 9E-06 30.6 1.7 30 1-30 142-171 (209)
149 PF06080 DUF938: Protein of un 87.3 1.7 3.7E-05 27.8 4.3 64 13-76 123-188 (204)
150 TIGR01534 GAPDH-I glyceraldehy 85.3 1.5 3.3E-05 30.1 3.6 34 1-34 91-124 (327)
151 PLN03096 glyceraldehyde-3-phos 85.2 1.6 3.5E-05 30.7 3.8 35 1-35 151-185 (395)
152 TIGR00080 pimt protein-L-isoas 85.2 1.4 3.1E-05 28.0 3.3 30 1-30 147-176 (215)
153 PRK15425 gapA glyceraldehyde-3 85.1 1.4 3.1E-05 30.2 3.5 35 1-35 90-124 (331)
154 PRK13944 protein-L-isoaspartat 85.0 1.8 3.8E-05 27.4 3.7 30 1-30 143-172 (205)
155 PRK00377 cbiT cobalt-precorrin 84.9 2.2 4.9E-05 26.7 4.1 30 1-30 112-144 (198)
156 PRK00517 prmA ribosomal protei 84.7 3.6 7.9E-05 26.8 5.1 35 1-35 180-217 (250)
157 PRK13535 erythrose 4-phosphate 84.6 1.9 4.1E-05 29.7 3.8 34 1-34 92-125 (336)
158 COG0057 GapA Glyceraldehyde-3- 84.1 3.6 7.8E-05 28.3 4.9 70 1-70 90-166 (335)
159 PRK07729 glyceraldehyde-3-phos 83.9 2.2 4.8E-05 29.5 4.0 34 1-34 90-123 (343)
160 PRK08955 glyceraldehyde-3-phos 83.9 1.9 4E-05 29.7 3.6 34 1-34 89-122 (334)
161 PTZ00023 glyceraldehyde-3-phos 83.7 2 4.4E-05 29.6 3.7 35 1-35 91-125 (337)
162 PRK07403 glyceraldehyde-3-phos 83.2 2.3 4.9E-05 29.4 3.7 34 1-34 91-124 (337)
163 PRK00312 pcm protein-L-isoaspa 83.0 2.6 5.6E-05 26.6 3.8 31 1-31 145-175 (212)
164 PF06962 rRNA_methylase: Putat 82.8 1.4 3E-05 26.4 2.4 24 12-35 73-96 (140)
165 COG2242 CobL Precorrin-6B meth 82.8 3 6.4E-05 26.3 3.9 35 1-35 103-139 (187)
166 TIGR03840 TMPT_Se_Te thiopurin 82.7 2.8 6.1E-05 26.8 3.9 34 1-34 114-155 (213)
167 PTZ00434 cytosolic glyceraldeh 82.6 1.6 3.5E-05 30.4 2.9 35 1-35 105-139 (361)
168 PLN02237 glyceraldehyde-3-phos 82.3 3.1 6.8E-05 29.8 4.2 34 1-34 166-199 (442)
169 PRK00536 speE spermidine synth 82.2 2.8 6E-05 27.9 3.8 32 1-32 140-172 (262)
170 KOG1661|consensus 82.0 2.1 4.7E-05 27.7 3.1 31 1-31 163-193 (237)
171 TIGR01546 GAPDH-II_archae glyc 81.8 5.5 0.00012 27.5 5.2 68 1-70 76-151 (333)
172 PF04016 DUF364: Domain of unk 81.6 9.1 0.0002 23.0 5.6 68 1-72 63-132 (147)
173 PRK14967 putative methyltransf 79.9 13 0.00028 23.7 6.8 17 14-30 142-158 (223)
174 COG0275 Predicted S-adenosylme 79.8 2.7 5.8E-05 28.6 3.1 23 12-34 225-247 (314)
175 PRK08618 ornithine cyclodeamin 79.6 2.8 6.1E-05 28.6 3.3 39 1-41 193-232 (325)
176 PF01113 DapB_N: Dihydrodipico 78.5 2.7 5.8E-05 24.4 2.6 33 1-34 68-100 (124)
177 TIGR00006 S-adenosyl-methyltra 77.8 3.3 7.1E-05 28.2 3.1 23 12-34 221-243 (305)
178 PRK00107 gidB 16S rRNA methylt 76.6 5.9 0.00013 24.8 3.9 31 1-31 113-145 (187)
179 KOG1540|consensus 76.3 3.4 7.5E-05 27.6 2.8 28 7-34 190-217 (296)
180 TIGR00518 alaDH alanine dehydr 75.8 14 0.0003 25.9 5.8 34 1-34 231-270 (370)
181 PF10369 ALS_ss_C: Small subun 75.4 6.6 0.00014 20.8 3.3 28 3-30 38-65 (75)
182 PF01209 Ubie_methyltran: ubiE 74.2 3.2 6.9E-05 27.0 2.3 23 12-34 134-156 (233)
183 PRK04266 fibrillarin; Provisio 73.9 7.9 0.00017 25.1 4.0 30 1-30 142-175 (226)
184 TIGR00406 prmA ribosomal prote 73.7 6.8 0.00015 26.2 3.8 34 1-34 226-262 (288)
185 PRK13303 L-aspartate dehydroge 73.6 5.1 0.00011 26.5 3.2 30 1-30 62-91 (265)
186 PRK04207 glyceraldehyde-3-phos 72.8 6.5 0.00014 27.1 3.6 32 1-32 79-110 (341)
187 COG2226 UbiE Methylase involve 72.7 10 0.00022 24.9 4.3 24 12-35 137-160 (238)
188 KOG4300|consensus 72.4 5.7 0.00012 25.8 3.0 20 13-32 164-183 (252)
189 PF11017 DUF2855: Protein of u 71.5 7.9 0.00017 26.5 3.7 97 3-100 202-312 (314)
190 TIGR02853 spore_dpaA dipicolin 71.4 8 0.00017 26.0 3.7 39 1-39 210-248 (287)
191 PRK11579 putative oxidoreducta 70.9 31 0.00067 23.6 7.1 69 1-73 65-142 (346)
192 PRK00050 16S rRNA m(4)C1402 me 70.6 6.4 0.00014 26.7 3.1 23 12-34 217-239 (296)
193 PF00670 AdoHcyase_NAD: S-aden 70.2 3.3 7.2E-05 25.5 1.6 38 1-38 79-117 (162)
194 smart00859 Semialdhyde_dh Semi 70.2 11 0.00024 21.4 3.8 32 1-32 66-100 (122)
195 PF01795 Methyltransf_5: MraW 68.6 5.1 0.00011 27.4 2.3 23 12-34 222-244 (310)
196 PF08351 DUF1726: Domain of un 68.3 15 0.00034 20.2 3.9 30 3-32 15-46 (92)
197 PRK11088 rrmA 23S rRNA methylt 68.1 6.9 0.00015 25.8 2.9 30 1-31 152-181 (272)
198 PLN02272 glyceraldehyde-3-phos 67.9 8.3 0.00018 27.5 3.3 34 1-34 175-208 (421)
199 TIGR00477 tehB tellurite resis 67.7 13 0.00029 23.2 4.0 20 12-31 114-133 (195)
200 PRK13301 putative L-aspartate 66.0 11 0.00023 25.3 3.4 31 1-31 63-93 (267)
201 PRK08287 cobalt-precorrin-6Y C 65.8 12 0.00026 23.1 3.5 31 1-31 98-131 (187)
202 PRK10206 putative oxidoreducta 65.6 41 0.00089 23.1 6.3 69 1-73 65-142 (344)
203 TIGR02752 MenG_heptapren 2-hep 65.4 11 0.00024 24.0 3.4 21 12-32 132-152 (231)
204 PRK13255 thiopurine S-methyltr 65.0 9.5 0.00021 24.5 3.0 31 1-31 117-155 (218)
205 PLN02781 Probable caffeoyl-CoA 64.7 11 0.00024 24.5 3.2 31 1-31 145-178 (234)
206 COG2519 GCD14 tRNA(1-methylade 64.5 15 0.00032 24.5 3.7 31 1-31 164-195 (256)
207 PF01118 Semialdhyde_dh: Semia 63.7 8.5 0.00018 22.1 2.4 32 1-32 67-98 (121)
208 PTZ00353 glycosomal glyceralde 63.5 9.3 0.0002 26.5 2.9 31 1-31 93-123 (342)
209 PRK11207 tellurite resistance 63.1 18 0.00039 22.7 3.9 31 1-31 96-134 (197)
210 COG0769 MurE UDP-N-acetylmuram 62.9 57 0.0012 23.8 8.1 97 2-98 334-439 (475)
211 COG4981 Enoyl reductase domain 62.9 64 0.0014 24.3 7.4 97 13-111 78-185 (717)
212 PF07109 Mg-por_mtran_C: Magne 62.4 10 0.00022 21.4 2.4 28 82-111 7-34 (97)
213 COG4122 Predicted O-methyltran 62.4 13 0.00029 24.1 3.3 31 1-31 133-166 (219)
214 TIGR00563 rsmB ribosomal RNA s 61.9 15 0.00032 26.1 3.7 19 13-31 350-368 (426)
215 TIGR00537 hemK_rel_arch HemK-r 61.8 21 0.00046 21.8 4.1 19 13-31 122-140 (179)
216 TIGR00138 gidB 16S rRNA methyl 61.7 16 0.00035 22.7 3.5 30 1-30 110-141 (181)
217 TIGR00417 speE spermidine synt 61.0 16 0.00035 24.2 3.6 20 12-31 167-186 (270)
218 PLN02490 MPBQ/MSBQ methyltrans 60.0 16 0.00034 25.4 3.5 21 12-32 196-216 (340)
219 PRK04457 spermidine synthase; 59.9 20 0.00043 23.7 3.9 20 11-30 157-176 (262)
220 TIGR00036 dapB dihydrodipicoli 59.9 15 0.00032 24.4 3.3 31 1-32 69-99 (266)
221 PRK07340 ornithine cyclodeamin 59.8 7.8 0.00017 26.2 2.0 40 1-42 189-229 (304)
222 PRK14188 bifunctional 5,10-met 59.4 11 0.00025 25.5 2.7 32 1-34 202-233 (296)
223 PF01234 NNMT_PNMT_TEMT: NNMT/ 59.1 7.7 0.00017 25.8 1.8 22 13-34 181-202 (256)
224 PRK14904 16S rRNA methyltransf 58.8 19 0.00041 25.8 3.8 20 13-32 359-378 (445)
225 PRK06823 ornithine cyclodeamin 58.7 11 0.00024 25.7 2.6 41 1-42 193-234 (315)
226 PF00899 ThiF: ThiF family; I 58.0 21 0.00047 20.7 3.5 31 1-31 93-123 (135)
227 PLN02232 ubiquinone biosynthes 57.9 14 0.00031 22.3 2.8 23 12-34 62-84 (160)
228 PF14258 DUF4350: Domain of un 57.8 15 0.00033 18.7 2.6 19 12-30 51-69 (70)
229 PLN02476 O-methyltransferase 57.8 13 0.00028 25.0 2.7 31 1-31 195-228 (278)
230 PLN02366 spermidine synthase 57.7 17 0.00038 24.8 3.3 19 13-31 188-206 (308)
231 PF02875 Mur_ligase_C: Mur lig 57.2 23 0.00051 19.0 3.3 31 2-32 15-49 (91)
232 COG4992 ArgD Ornithine/acetylo 57.1 22 0.00048 25.3 3.8 26 1-26 100-125 (404)
233 TIGR01934 MenG_MenH_UbiE ubiqu 56.4 22 0.00048 22.2 3.6 23 12-34 124-146 (223)
234 PRK13302 putative L-aspartate 56.0 24 0.00053 23.5 3.8 30 1-30 68-97 (271)
235 TIGR03855 NAD_NadX aspartate d 55.0 24 0.00052 23.0 3.6 30 1-30 38-67 (229)
236 PF05724 TPMT: Thiopurine S-me 54.9 15 0.00033 23.6 2.6 31 1-31 117-155 (218)
237 PRK14175 bifunctional 5,10-met 54.6 15 0.00032 24.9 2.6 32 1-34 202-233 (286)
238 PRK10792 bifunctional 5,10-met 54.4 14 0.00031 25.0 2.5 31 1-33 203-233 (285)
239 PRK11705 cyclopropane fatty ac 53.9 30 0.00065 24.4 4.1 21 12-32 248-268 (383)
240 PRK14901 16S rRNA methyltransf 53.6 23 0.00049 25.3 3.5 18 13-30 366-383 (434)
241 PRK13304 L-aspartate dehydroge 53.6 24 0.00052 23.3 3.5 30 1-30 62-91 (265)
242 PRK08300 acetaldehyde dehydrog 53.1 25 0.00054 24.0 3.5 31 1-31 71-101 (302)
243 PLN02244 tocopherol O-methyltr 53.0 30 0.00065 23.8 4.0 21 12-32 204-224 (340)
244 PRK00216 ubiE ubiquinone/menaq 53.0 29 0.00063 21.9 3.7 22 12-33 139-160 (239)
245 PRK10258 biotin biosynthesis p 52.9 61 0.0013 21.0 7.1 22 12-33 121-142 (251)
246 PRK13256 thiopurine S-methyltr 52.8 24 0.00052 23.0 3.3 32 1-32 125-164 (226)
247 PRK07502 cyclohexadienyl dehyd 52.6 26 0.00057 23.5 3.6 32 1-32 67-101 (307)
248 PLN02233 ubiquinone biosynthes 52.4 24 0.00053 23.2 3.3 23 12-34 163-185 (261)
249 PRK08317 hypothetical protein; 52.2 26 0.00055 22.1 3.4 20 12-31 105-124 (241)
250 PRK14178 bifunctional 5,10-met 52.2 18 0.00038 24.5 2.6 31 1-33 196-226 (279)
251 PF08704 GCD14: tRNA methyltra 51.8 21 0.00045 23.6 2.9 30 2-32 115-147 (247)
252 PLN03075 nicotianamine synthas 51.8 25 0.00054 24.0 3.3 32 1-32 196-234 (296)
253 TIGR02072 BioC biotin biosynth 51.3 33 0.00071 21.6 3.8 21 12-32 116-136 (240)
254 COG2423 Predicted ornithine cy 50.9 23 0.0005 24.5 3.1 42 1-43 196-238 (330)
255 PRK00811 spermidine synthase; 50.7 29 0.00063 23.2 3.5 19 13-31 173-191 (283)
256 cd05213 NAD_bind_Glutamyl_tRNA 50.6 29 0.00064 23.5 3.6 13 1-13 239-251 (311)
257 PF01596 Methyltransf_3: O-met 50.6 14 0.0003 23.6 1.9 31 1-31 122-155 (205)
258 PRK14194 bifunctional 5,10-met 50.6 19 0.00041 24.6 2.6 31 1-33 203-233 (301)
259 PF01728 FtsJ: FtsJ-like methy 50.6 16 0.00035 22.3 2.2 21 13-33 121-141 (181)
260 PF13241 NAD_binding_7: Putati 50.2 26 0.00057 19.4 2.9 34 1-34 61-94 (103)
261 PRK14192 bifunctional 5,10-met 49.5 18 0.00039 24.4 2.4 32 1-34 203-234 (283)
262 PRK07402 precorrin-6B methylas 49.3 42 0.00091 20.8 4.0 21 12-32 123-143 (196)
263 PLN02589 caffeoyl-CoA O-methyl 49.3 23 0.00049 23.4 2.8 30 1-30 157-189 (247)
264 PF14237 DUF4339: Domain of un 49.0 29 0.00063 16.1 2.5 21 59-79 14-34 (45)
265 TIGR03215 ac_ald_DH_ac acetald 49.0 37 0.0008 23.0 3.8 30 1-30 65-94 (285)
266 PF01408 GFO_IDH_MocA: Oxidore 48.4 30 0.00066 19.3 3.0 22 2-23 64-85 (120)
267 PRK14874 aspartate-semialdehyd 48.1 32 0.00069 23.7 3.5 31 1-31 64-94 (334)
268 cd01483 E1_enzyme_family Super 48.1 34 0.00075 20.0 3.3 30 1-30 90-119 (143)
269 PF02882 THF_DHG_CYH_C: Tetrah 48.0 19 0.00041 22.1 2.2 30 1-32 80-109 (160)
270 COG0289 DapB Dihydrodipicolina 47.9 23 0.0005 23.7 2.7 33 1-34 70-102 (266)
271 TIGR00452 methyltransferase, p 47.5 32 0.0007 23.6 3.4 19 12-30 206-224 (314)
272 PRK11895 ilvH acetolactate syn 47.3 24 0.00051 21.8 2.5 25 3-27 120-144 (161)
273 PRK08374 homoserine dehydrogen 46.8 34 0.00075 23.6 3.5 28 1-28 92-119 (336)
274 PRK12335 tellurite resistance 46.8 32 0.00069 23.0 3.3 20 12-31 204-223 (287)
275 PF13065 DUF3928: Protein of u 46.7 41 0.00089 18.0 3.0 33 59-96 59-91 (95)
276 PRK05134 bifunctional 3-demeth 46.6 34 0.00074 21.8 3.3 21 12-32 132-152 (233)
277 PRK14189 bifunctional 5,10-met 46.4 20 0.00044 24.2 2.3 31 1-33 202-232 (285)
278 COG4565 CitB Response regulato 46.0 84 0.0018 20.6 5.1 88 5-97 26-119 (224)
279 TIGR00119 acolac_sm acetolacta 45.9 38 0.00083 20.8 3.2 25 3-27 119-143 (157)
280 PRK06718 precorrin-2 dehydroge 45.7 46 0.001 21.1 3.7 47 1-48 71-117 (202)
281 TIGR02716 C20_methyl_CrtF C-20 45.7 24 0.00052 23.7 2.6 20 13-32 236-255 (306)
282 PF13847 Methyltransf_31: Meth 45.5 24 0.00052 20.8 2.4 33 1-33 74-112 (152)
283 PRK14902 16S rRNA methyltransf 45.0 48 0.001 23.8 4.1 18 13-30 361-378 (444)
284 PRK15068 tRNA mo(5)U34 methylt 45.0 38 0.00082 23.2 3.5 20 12-31 207-226 (322)
285 CHL00100 ilvH acetohydroxyacid 44.5 28 0.0006 21.8 2.5 25 3-27 120-144 (174)
286 PRK11188 rrmJ 23S rRNA methylt 44.2 49 0.0011 21.0 3.7 19 13-31 147-165 (209)
287 TIGR01296 asd_B aspartate-semi 44.2 39 0.00084 23.4 3.4 31 1-31 62-92 (339)
288 PRK09489 rsmC 16S ribosomal RN 44.1 54 0.0012 22.7 4.1 34 2-35 78-116 (342)
289 PRK14179 bifunctional 5,10-met 43.7 25 0.00054 23.8 2.4 31 1-33 202-232 (284)
290 PTZ00098 phosphoethanolamine N 43.6 31 0.00068 22.7 2.8 21 12-32 137-157 (263)
291 cd05212 NAD_bind_m-THF_DH_Cycl 43.3 25 0.00055 21.0 2.2 32 1-34 72-103 (140)
292 TIGR00446 nop2p NOL1/NOP2/sun 43.3 27 0.00059 23.1 2.5 19 13-31 181-199 (264)
293 PTZ00146 fibrillarin; Provisio 43.2 48 0.001 22.6 3.6 30 1-30 203-236 (293)
294 PRK01683 trans-aconitate 2-met 42.4 53 0.0012 21.3 3.8 20 12-31 111-130 (258)
295 PRK00121 trmB tRNA (guanine-N( 42.4 65 0.0014 20.3 4.0 19 12-30 137-155 (202)
296 COG3288 PntA NAD/NADP transhyd 42.3 1.2E+02 0.0025 21.3 5.3 57 1-57 245-310 (356)
297 PRK10901 16S rRNA methyltransf 42.2 41 0.00089 24.0 3.4 19 13-31 354-372 (427)
298 PF01202 SKI: Shikimate kinase 42.0 24 0.00051 21.2 1.9 7 25-31 63-69 (158)
299 PF02153 PDH: Prephenate dehyd 41.4 65 0.0014 21.2 4.0 55 1-55 46-103 (258)
300 PRK00048 dihydrodipicolinate r 41.3 45 0.00097 22.0 3.3 30 1-31 61-90 (257)
301 COG3963 Phospholipid N-methylt 40.6 69 0.0015 20.3 3.7 33 1-33 118-158 (194)
302 PRK08289 glyceraldehyde-3-phos 40.5 40 0.00087 24.7 3.1 35 1-35 225-262 (477)
303 COG0421 SpeE Spermidine syntha 40.2 61 0.0013 21.9 3.8 20 12-31 171-190 (282)
304 TIGR00091 tRNA (guanine-N(7)-) 39.8 65 0.0014 20.1 3.7 18 13-30 114-131 (194)
305 COG1712 Predicted dinucleotide 39.5 47 0.001 22.0 3.0 31 1-31 61-91 (255)
306 PRK08324 short chain dehydroge 39.4 45 0.00098 25.3 3.4 20 14-33 537-559 (681)
307 TIGR02356 adenyl_thiF thiazole 39.2 48 0.001 21.0 3.1 28 1-28 112-139 (202)
308 KOG0169|consensus 38.7 1.1E+02 0.0024 23.8 5.2 59 10-77 315-375 (746)
309 PRK11036 putative S-adenosyl-L 38.2 41 0.00089 21.9 2.8 21 12-32 130-150 (255)
310 PF13489 Methyltransf_23: Meth 38.2 30 0.00065 20.2 2.0 21 12-32 96-116 (161)
311 PRK14968 putative methyltransf 38.1 42 0.00092 20.3 2.7 18 13-30 130-147 (188)
312 cd01080 NAD_bind_m-THF_DH_Cycl 37.9 41 0.00089 20.8 2.6 32 1-34 88-119 (168)
313 TIGR01470 cysG_Nterm siroheme 37.8 89 0.0019 19.9 4.1 51 1-51 70-121 (205)
314 smart00828 PKS_MT Methyltransf 37.8 48 0.001 20.9 3.0 21 12-32 85-105 (224)
315 cd01487 E1_ThiF_like E1_ThiF_l 37.8 44 0.00096 20.6 2.7 31 1-31 89-120 (174)
316 PRK15451 tRNA cmo(5)U34 methyl 37.3 46 0.00099 21.7 2.8 21 12-32 145-165 (247)
317 cd05007 SIS_Etherase N-acetylm 37.0 44 0.00095 22.1 2.7 23 13-35 38-60 (257)
318 COG0144 Sun tRNA and rRNA cyto 36.9 38 0.00082 23.6 2.5 19 13-31 270-288 (355)
319 PF06859 Bin3: Bicoid-interact 36.3 27 0.00058 20.1 1.4 18 13-30 26-43 (110)
320 cd00757 ThiF_MoeB_HesA_family 36.1 54 0.0012 21.1 3.0 28 1-28 112-139 (228)
321 COG2103 Predicted sugar phosph 35.9 53 0.0011 22.3 2.9 22 13-34 49-70 (298)
322 cd08591 PI-PLCc_beta Catalytic 35.9 60 0.0013 21.7 3.2 25 12-36 30-54 (257)
323 COG5426 Uncharacterized membra 35.8 53 0.0012 21.2 2.8 59 44-107 17-75 (254)
324 PF05175 MTS: Methyltransferas 35.8 35 0.00076 20.8 2.0 22 13-34 122-143 (170)
325 PRK06046 alanine dehydrogenase 35.5 37 0.0008 23.2 2.3 40 1-41 194-234 (326)
326 KOG3674|consensus 35.3 26 0.00055 25.9 1.5 29 2-30 233-273 (696)
327 PRK06407 ornithine cyclodeamin 35.1 36 0.00079 23.1 2.2 41 1-42 183-224 (301)
328 PF08003 Methyltransf_9: Prote 35.0 60 0.0013 22.4 3.1 19 12-30 200-218 (315)
329 TIGR02992 ectoine_eutC ectoine 35.0 53 0.0011 22.5 3.0 40 1-41 195-235 (326)
330 cd01079 NAD_bind_m-THF_DH NAD 34.9 34 0.00074 21.9 1.9 31 1-33 127-158 (197)
331 PRK08291 ectoine utilization p 34.8 53 0.0012 22.5 2.9 39 1-40 198-237 (330)
332 PRK14103 trans-aconitate 2-met 34.7 52 0.0011 21.4 2.8 19 12-30 107-125 (255)
333 PRK14176 bifunctional 5,10-met 34.6 42 0.00091 22.8 2.4 31 1-33 208-238 (287)
334 KOG4589|consensus 34.5 76 0.0017 20.5 3.3 30 2-31 71-101 (232)
335 PF08468 MTS_N: Methyltransfer 34.4 48 0.001 20.2 2.4 22 13-34 87-108 (155)
336 KOG3923|consensus 34.2 26 0.00055 24.2 1.3 32 1-32 184-216 (342)
337 PRK14185 bifunctional 5,10-met 34.1 43 0.00093 22.8 2.3 31 1-33 205-235 (293)
338 PRK14172 bifunctional 5,10-met 33.5 49 0.0011 22.4 2.5 32 1-34 202-233 (278)
339 PRK05690 molybdopterin biosynt 33.2 70 0.0015 21.0 3.2 31 1-31 123-153 (245)
340 PLN02929 NADH kinase 33.1 83 0.0018 21.6 3.6 73 1-76 65-142 (301)
341 cd00755 YgdL_like Family of ac 33.1 72 0.0016 20.8 3.2 26 1-26 103-128 (231)
342 TIGR02371 ala_DH_arch alanine 32.6 40 0.00086 23.1 2.1 40 1-41 193-233 (325)
343 TIGR00308 TRM1 tRNA(guanine-26 32.6 92 0.002 22.0 3.8 31 1-31 115-147 (374)
344 PRK09716 hypothetical protein; 32.5 28 0.0006 23.1 1.2 24 14-37 49-72 (395)
345 PRK06392 homoserine dehydrogen 32.2 71 0.0015 22.1 3.2 29 1-29 82-114 (326)
346 PLN02700 homoserine dehydrogen 32.1 81 0.0017 22.4 3.5 28 2-29 111-138 (377)
347 COG2813 RsmC 16S RNA G1207 met 32.1 53 0.0011 22.5 2.5 23 13-35 55-77 (300)
348 PLN02336 phosphoethanolamine N 31.8 75 0.0016 22.8 3.4 21 12-32 350-370 (475)
349 COG0112 GlyA Glycine/serine hy 31.6 2E+02 0.0044 20.8 5.6 87 8-94 96-192 (413)
350 PLN02897 tetrahydrofolate dehy 31.4 44 0.00096 23.4 2.1 32 1-34 258-289 (345)
351 PF11079 YqhG: Bacterial prote 31.2 1.7E+02 0.0036 19.7 7.3 46 9-55 84-132 (260)
352 PRK09485 mmuM homocysteine met 31.2 1.7E+02 0.0037 19.9 4.9 21 3-24 218-238 (304)
353 PRK11933 yebU rRNA (cytosine-C 31.1 52 0.0011 24.0 2.5 19 13-31 224-242 (470)
354 COG1432 Uncharacterized conser 31.1 1.1E+02 0.0024 19.1 3.7 33 1-34 111-144 (181)
355 PHA00743 helix-turn-helix prot 30.9 28 0.00061 17.0 0.8 34 59-95 6-39 (51)
356 PRK05562 precorrin-2 dehydroge 30.8 1.6E+02 0.0034 19.3 4.4 53 1-53 86-139 (223)
357 PRK09436 thrA bifunctional asp 30.6 83 0.0018 24.8 3.6 29 2-30 549-577 (819)
358 PRK14169 bifunctional 5,10-met 30.4 52 0.0011 22.3 2.3 32 1-34 200-231 (282)
359 PRK01581 speE spermidine synth 30.4 96 0.0021 22.1 3.6 20 13-32 250-269 (374)
360 PRK00436 argC N-acetyl-gamma-g 30.4 98 0.0021 21.4 3.7 32 1-32 69-100 (343)
361 PRK08261 fabG 3-ketoacyl-(acyl 30.3 1.2E+02 0.0027 21.5 4.3 15 84-98 416-430 (450)
362 TIGR02355 moeB molybdopterin s 30.3 76 0.0016 20.8 3.0 31 1-31 115-145 (240)
363 PRK14180 bifunctional 5,10-met 30.1 52 0.0011 22.3 2.2 31 1-33 202-232 (282)
364 TIGR00274 N-acetylmuramic acid 30.0 69 0.0015 21.7 2.8 22 13-34 46-67 (291)
365 TIGR01983 UbiG ubiquinone bios 30.0 90 0.0019 19.6 3.3 20 12-31 130-149 (224)
366 PRK14184 bifunctional 5,10-met 30.0 53 0.0011 22.3 2.3 32 1-34 205-236 (286)
367 PRK08644 thiamine biosynthesis 29.7 76 0.0016 20.3 2.9 30 1-30 118-148 (212)
368 PRK14167 bifunctional 5,10-met 29.6 50 0.0011 22.6 2.1 32 1-34 205-236 (297)
369 PF07090 DUF1355: Protein of u 29.6 1.1E+02 0.0024 19.2 3.5 21 14-34 91-111 (177)
370 TIGR00377 ant_ant_sig anti-ant 29.6 81 0.0018 17.2 2.7 8 24-31 75-82 (108)
371 TIGR01850 argC N-acetyl-gamma- 29.6 1E+02 0.0022 21.4 3.7 32 1-32 69-100 (346)
372 PRK08328 hypothetical protein; 29.4 86 0.0019 20.3 3.1 13 1-13 119-131 (231)
373 PRK14191 bifunctional 5,10-met 29.0 56 0.0012 22.2 2.2 31 1-33 201-231 (285)
374 PRK14171 bifunctional 5,10-met 28.9 60 0.0013 22.1 2.4 32 1-34 203-234 (288)
375 PRK06153 hypothetical protein; 28.6 96 0.0021 22.2 3.4 32 1-32 267-299 (393)
376 TIGR00978 asd_EA aspartate-sem 28.6 93 0.002 21.5 3.3 32 1-32 74-105 (341)
377 PRK07589 ornithine cyclodeamin 28.6 70 0.0015 22.3 2.7 39 1-41 194-236 (346)
378 PRK14183 bifunctional 5,10-met 28.6 60 0.0013 22.0 2.3 31 1-33 201-231 (281)
379 PRK14190 bifunctional 5,10-met 28.3 62 0.0013 22.0 2.4 32 1-34 202-233 (284)
380 KOG2198|consensus 28.3 56 0.0012 23.1 2.2 20 13-32 278-297 (375)
381 PLN02516 methylenetetrahydrofo 28.2 61 0.0013 22.2 2.3 32 1-34 211-242 (299)
382 TIGR02354 thiF_fam2 thiamine b 28.0 89 0.0019 19.8 3.0 13 1-13 111-123 (200)
383 COG0002 ArgC Acetylglutamate s 28.0 1.1E+02 0.0024 21.5 3.5 32 1-32 71-102 (349)
384 TIGR01318 gltD_gamma_fam gluta 28.0 10 0.00022 27.3 -1.5 12 1-12 227-238 (467)
385 PRK05786 fabG 3-ketoacyl-(acyl 27.9 1.5E+02 0.0032 18.6 4.0 20 14-33 118-137 (238)
386 PRK12570 N-acetylmuramic acid- 27.9 76 0.0016 21.6 2.8 23 13-35 47-69 (296)
387 PRK06349 homoserine dehydrogen 27.9 1.2E+02 0.0026 21.7 3.9 29 1-29 73-102 (426)
388 TIGR00740 methyltransferase, p 27.5 79 0.0017 20.3 2.7 20 12-31 142-161 (239)
389 PLN02616 tetrahydrofolate dehy 27.3 57 0.0012 23.0 2.1 32 1-34 275-306 (364)
390 PRK14177 bifunctional 5,10-met 27.2 62 0.0014 22.0 2.2 32 1-34 203-234 (284)
391 PRK14193 bifunctional 5,10-met 27.2 60 0.0013 22.0 2.1 32 1-34 204-235 (284)
392 PRK14186 bifunctional 5,10-met 27.0 61 0.0013 22.2 2.2 32 1-34 202-233 (297)
393 PRK14170 bifunctional 5,10-met 27.0 62 0.0013 22.0 2.2 32 1-34 201-232 (284)
394 COG2256 MGS1 ATPase related to 26.9 2.3E+02 0.005 20.6 4.9 46 22-67 128-174 (436)
395 PRK07806 short chain dehydroge 26.9 1.6E+02 0.0035 18.6 4.1 20 13-32 116-135 (248)
396 PF11123 DNA_Packaging_2: DNA 26.7 75 0.0016 17.1 2.0 39 59-97 32-70 (82)
397 PRK14166 bifunctional 5,10-met 26.7 63 0.0014 21.9 2.2 32 1-34 201-232 (282)
398 PF00437 T2SE: Type II/IV secr 26.7 1.9E+02 0.0041 18.9 6.3 39 59-99 184-222 (270)
399 PF13460 NAD_binding_10: NADH( 26.7 1.5E+02 0.0032 17.8 3.7 32 1-32 61-98 (183)
400 PRK14168 bifunctional 5,10-met 26.6 62 0.0013 22.1 2.1 31 1-33 209-239 (297)
401 PLN02823 spermine synthase 26.6 1.2E+02 0.0026 21.1 3.5 18 14-31 202-220 (336)
402 cd05291 HicDH_like L-2-hydroxy 26.6 1.4E+02 0.0031 20.2 3.9 34 1-34 69-120 (306)
403 PF13604 AAA_30: AAA domain; P 26.4 1.7E+02 0.0037 18.3 5.0 62 12-73 108-178 (196)
404 PRK15116 sulfur acceptor prote 26.4 1.1E+02 0.0025 20.5 3.3 32 1-32 122-154 (268)
405 PRK05447 1-deoxy-D-xylulose 5- 26.1 86 0.0019 22.4 2.8 29 1-29 92-120 (385)
406 TIGR02130 dapB_plant dihydrodi 25.9 1.2E+02 0.0025 20.6 3.3 33 1-34 69-102 (275)
407 PRK14181 bifunctional 5,10-met 25.8 70 0.0015 21.8 2.3 32 1-34 201-232 (287)
408 PRK00625 shikimate kinase; Pro 25.7 93 0.002 19.2 2.7 13 19-31 68-80 (173)
409 KOG1205|consensus 25.7 81 0.0017 21.4 2.5 27 9-35 125-153 (282)
410 PRK15001 SAM-dependent 23S rib 25.4 85 0.0019 22.2 2.7 20 13-32 322-341 (378)
411 PRK14187 bifunctional 5,10-met 25.4 72 0.0016 21.8 2.3 31 1-33 204-234 (294)
412 PRK06270 homoserine dehydrogen 25.3 94 0.002 21.5 2.9 29 1-29 90-123 (341)
413 PRK05441 murQ N-acetylmuramic 25.2 91 0.002 21.2 2.8 22 13-34 51-72 (299)
414 PF00036 EF-hand_1: EF hand; 25.0 70 0.0015 13.3 1.8 17 87-105 1-17 (29)
415 PRK04452 acetyl-CoA decarbonyl 24.9 2.5E+02 0.0053 19.6 5.6 71 3-76 127-204 (319)
416 PF08902 DUF1848: Domain of un 24.8 1.7E+02 0.0037 19.8 3.9 48 60-109 101-154 (266)
417 PRK14173 bifunctional 5,10-met 24.7 71 0.0015 21.8 2.1 32 1-34 199-230 (287)
418 PF01564 Spermine_synth: Sperm 24.6 1.1E+02 0.0024 20.1 3.0 20 12-31 172-191 (246)
419 KOG1975|consensus 24.5 70 0.0015 22.5 2.1 18 13-30 219-236 (389)
420 PRK14582 pgaB outer membrane N 24.3 1.5E+02 0.0032 22.9 3.9 45 59-112 72-116 (671)
421 PLN02489 homocysteine S-methyl 24.2 2.5E+02 0.0055 19.5 5.0 23 3-26 245-267 (335)
422 PRK13938 phosphoheptose isomer 24.1 99 0.0022 19.6 2.6 22 14-35 35-56 (196)
423 KOG2924|consensus 24.1 72 0.0016 21.8 2.0 29 1-31 125-155 (366)
424 PF03435 Saccharop_dh: Sacchar 24.0 1.1E+02 0.0023 21.4 3.0 30 1-30 68-97 (386)
425 PF10727 Rossmann-like: Rossma 24.0 1.4E+02 0.003 17.5 3.1 23 1-24 69-91 (127)
426 PF13580 SIS_2: SIS domain; PD 23.8 1.1E+02 0.0024 17.9 2.7 22 13-34 24-45 (138)
427 PF05401 NodS: Nodulation prot 23.8 61 0.0013 20.9 1.6 21 13-33 128-148 (201)
428 KOG1253|consensus 23.8 1.2E+02 0.0025 22.6 3.1 27 5-31 189-216 (525)
429 PRK08441 oorC 2-oxoglutarate-a 23.7 1.6E+02 0.0034 18.3 3.4 28 1-30 69-96 (183)
430 COG4798 Predicted methyltransf 23.4 1E+02 0.0022 20.1 2.5 19 13-31 148-166 (238)
431 PRK14581 hmsF outer membrane N 23.4 1.6E+02 0.0035 22.8 3.9 45 59-112 72-116 (672)
432 cd06844 STAS Sulphate Transpor 23.4 80 0.0017 17.2 1.9 9 23-31 70-78 (100)
433 TIGR01177 conserved hypothetic 23.3 1.1E+02 0.0023 21.0 2.8 20 12-31 275-294 (329)
434 PRK03612 spermidine synthase; 23.2 1.3E+02 0.0029 22.2 3.5 19 13-31 397-415 (521)
435 PRK15469 ghrA bifunctional gly 23.2 1.6E+02 0.0034 20.2 3.6 31 1-31 191-226 (312)
436 PF01383 CpcD: CpcD/allophycoc 23.1 91 0.002 15.5 1.9 22 10-31 33-54 (56)
437 COG2082 CobH Precorrin isomera 22.8 2.3E+02 0.0049 18.5 4.0 41 59-99 139-179 (210)
438 cd04929 ACT_TPH ACT domain of 22.8 76 0.0016 16.6 1.7 25 2-26 44-68 (74)
439 cd07041 STAS_RsbR_RsbS_like Su 22.7 59 0.0013 17.9 1.3 9 23-31 72-80 (109)
440 PRK14903 16S rRNA methyltransf 22.5 94 0.002 22.3 2.5 19 14-32 349-367 (431)
441 PRK10875 recD exonuclease V su 22.4 1.1E+02 0.0024 23.3 2.9 24 12-35 280-303 (615)
442 PRK14182 bifunctional 5,10-met 22.3 89 0.0019 21.2 2.2 32 1-34 201-232 (282)
443 PRK06274 indolepyruvate oxidor 22.0 1.8E+02 0.0039 18.1 3.5 28 2-31 69-96 (197)
444 smart00138 MeTrc Methyltransfe 21.7 1E+02 0.0023 20.4 2.5 18 12-29 223-240 (264)
445 COG0673 MviM Predicted dehydro 21.6 1.7E+02 0.0036 19.7 3.5 69 1-73 68-145 (342)
446 COG1889 NOP1 Fibrillarin-like 21.6 2.5E+02 0.0054 18.5 4.9 51 20-71 73-123 (231)
447 TIGR01447 recD exodeoxyribonuc 21.6 1.7E+02 0.0037 22.1 3.7 24 12-35 274-297 (586)
448 COG4123 Predicted O-methyltran 21.3 1.3E+02 0.0029 20.0 2.8 22 11-32 150-171 (248)
449 PF04019 DUF359: Protein of un 21.1 1.9E+02 0.0041 16.9 3.7 15 20-34 81-95 (121)
450 COG4091 Predicted homoserine d 21.0 1.5E+02 0.0033 21.2 3.1 30 1-30 102-132 (438)
451 PRK07411 hypothetical protein; 20.9 1.3E+02 0.0029 21.3 3.0 13 1-13 129-141 (390)
452 PF00891 Methyltransf_2: O-met 20.9 98 0.0021 19.9 2.2 20 13-32 179-200 (241)
453 PF07709 SRR: Seven Residue Re 20.9 58 0.0013 11.1 0.7 11 85-95 3-13 (14)
454 PRK06141 ornithine cyclodeamin 20.8 89 0.0019 21.3 2.1 40 1-41 190-230 (314)
455 PF02353 CMAS: Mycolic acid cy 20.6 1.1E+02 0.0025 20.4 2.5 20 12-31 147-166 (273)
456 PF09383 NIL: NIL domain; Int 20.1 1.5E+02 0.0032 15.2 3.2 26 4-29 49-74 (76)
457 cd01492 Aos1_SUMO Ubiquitin ac 20.1 1.7E+02 0.0038 18.4 3.2 26 1-26 111-136 (197)
458 PF12831 FAD_oxidored: FAD dep 20.0 1.5E+02 0.0032 21.2 3.1 29 2-31 1-29 (428)
459 PRK08664 aspartate-semialdehyd 20.0 1.8E+02 0.0039 20.2 3.4 31 1-31 77-107 (349)
No 1
>KOG0024|consensus
Probab=99.88 E-value=1.2e-21 Score=128.00 Aligned_cols=110 Identities=38% Similarity=0.685 Sum_probs=104.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+.|||+|...+++.++.+++.+|+++++|+..+.++|++..+..|+++++|+++|. .+|+.+++++.+|++++++++
T Consensus 243 ~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~ai~li~sGki~~k~lI 322 (354)
T KOG0024|consen 243 PDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTAIELVSSGKIDVKPLI 322 (354)
T ss_pred CCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHHHHHHHHHcCCcCchhhe
Confidence 5899999999999999999999999999999988899999999999999999999988 599999999999999999999
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
|++|+++++.+||+++.+++....|+++...
T Consensus 323 T~r~~~~~~~eAf~~~~~~~~~~iKv~i~~~ 353 (354)
T KOG0024|consen 323 THRYKFDDADEAFETLQHGEEGVIKVIITGP 353 (354)
T ss_pred ecccccchHHHHHHHHHhCcCCceEEEEeCC
Confidence 9999999999999999998866799998765
No 2
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.84 E-value=5.9e-20 Score=123.33 Aligned_cols=108 Identities=21% Similarity=0.387 Sum_probs=97.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT 80 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (112)
+|++|||+|.+.++..++++++++|+++.+|.+....++++..++.+++++.|++.+..+++++++++.+|++++.++++
T Consensus 236 ~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~i~ 315 (343)
T PRK09880 236 FDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFNTAVSWLANGVINPLPLLS 315 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeeccccHHHHHHHHHcCCCCchhheE
Confidence 59999999988889999999999999999998666667788888899999999987778899999999999999888999
Q ss_pred eeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 81 HNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++|+|+|+++||+.+.+++. .+|+++.+
T Consensus 316 ~~~~l~~~~~A~~~~~~~~~-~gKvvl~~ 343 (343)
T PRK09880 316 AEYPFTDLEEALIFAGDKTQ-AAKVQLVF 343 (343)
T ss_pred EEEEHHHHHHHHHHHhcCCC-ceEEEEeC
Confidence 99999999999999988873 59999864
No 3
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.84 E-value=4.1e-20 Score=122.61 Aligned_cols=107 Identities=24% Similarity=0.340 Sum_probs=94.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|++|||+|++.++..++++++++|+++.+|.+..+.++++..++.+++++.++..+. ++++++++++.+|++++.+++
T Consensus 201 ~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g~i~~~~~i 280 (308)
T TIGR01202 201 YRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLHAVRELIESGALSLDGLI 280 (308)
T ss_pred CCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhcceEEEEecccchhHHHHHHHHHHcCCCChhhcc
Confidence 6999999999888999999999999999999876666777778888999999887654 789999999999999998899
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+++|||+|+++||+.+.++. ..+|+++.
T Consensus 281 t~~~~l~~~~~A~~~~~~~~-~~~Kv~~~ 308 (308)
T TIGR01202 281 THQRPASDAAEAYMTAFSDP-DCLKMILD 308 (308)
T ss_pred ceeecHHHHHHHHHHHhcCc-CceEEEeC
Confidence 99999999999999987765 34999873
No 4
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.81 E-value=5e-19 Score=117.55 Aligned_cols=106 Identities=25% Similarity=0.333 Sum_probs=94.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-Cc-cccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCcc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QM-VSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRK 77 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~-~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~ 77 (112)
+|+++|+++ +.++.+++++|+++|+++.+|++. .+ ..++...++.+++++.|+...+ .++++++++.++|++++.
T Consensus 230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~Ikp~- 307 (339)
T COG1064 230 ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKIKPE- 307 (339)
T ss_pred CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCceee-
Confidence 699999999 899999999999999999999985 44 5578888999999999999766 999999999999988764
Q ss_pred ceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
+.+.++++|+++||++|++++. .+|.|+.+.
T Consensus 308 -i~e~~~l~~in~A~~~m~~g~v-~gR~Vi~~~ 338 (339)
T COG1064 308 -ILETIPLDEINEAYERMEKGKV-RGRAVIDMS 338 (339)
T ss_pred -EEeeECHHHHHHHHHHHHcCCe-eeEEEecCC
Confidence 5468999999999999999995 499998765
No 5
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.81 E-value=6.7e-19 Score=118.73 Aligned_cols=109 Identities=26% Similarity=0.462 Sum_probs=97.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc-ccChhhhhhcCeeEEeEec-cC-CCHHHHHHHHHcCCCCCcc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV-SVPLVNACAKEIDILSCFR-YV-NDYPDALEMVASGKCPVRK 77 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~l~g~~~-~~-~~~~~~~~~~~~g~~~~~~ 77 (112)
+|++|||+|++.++.+++++++++|+++.+|.+.... .++...++.|++++.|++. +. .+++++++++++|++++.+
T Consensus 239 ~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~~~~ll~~g~i~~~~ 318 (350)
T COG1063 239 ADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFERALDLLASGKIDPEK 318 (350)
T ss_pred CCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHHHHHHHHHcCCCChhH
Confidence 6999999999999999999999999999999987655 6788889999999999965 44 7899999999999999999
Q ss_pred ceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+++++++++++++||+.+.+++....|+++.+
T Consensus 319 lit~~~~~~~~~~a~~~~~~~~~~~~Kv~i~~ 350 (350)
T COG1063 319 LITHRLPLDDAAEAYELFADRKEEAIKVVLKP 350 (350)
T ss_pred ceEeeccHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99999999999999999998664357998864
No 6
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.77 E-value=6.1e-18 Score=113.64 Aligned_cols=108 Identities=18% Similarity=0.277 Sum_probs=91.3
Q ss_pred Cc-EEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccC---hhhhhhcCeeEEeEecc------CCCHHHHHHHHHc
Q psy12355 1 MM-LYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVP---LVNACAKEIDILSCFRY------VNDYPDALEMVAS 70 (112)
Q Consensus 1 ~D-~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~---~~~~~~~~~~l~g~~~~------~~~~~~~~~~~~~ 70 (112)
+| ++|||+|.+.++..++++++++|+++.+|......+++ +..++.+++++.|++.+ ..+++++++++.+
T Consensus 229 ~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~ 308 (347)
T PRK10309 229 FDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQEWETASRLLTE 308 (347)
T ss_pred CCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchhHHHHHHHHHHc
Confidence 35 89999999888999999999999999999765443333 24578899999998753 2578899999999
Q ss_pred CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
|+++++++++++|+|+|+++||+.+.+++ ..+|+|+.+
T Consensus 309 g~i~~~~~i~~~~~l~~~~~A~~~~~~~~-~~gKvvv~~ 346 (347)
T PRK10309 309 RKLSLEPLIAHRGSFESFAQAVRDLAGNP-MPGKVLLQI 346 (347)
T ss_pred CCCCchhheEEEeeHHHHHHHHHHHhcCC-cceEEEEeC
Confidence 99988889999999999999999999887 459999875
No 7
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.77 E-value=4.5e-18 Score=112.12 Aligned_cols=106 Identities=20% Similarity=0.310 Sum_probs=93.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~ 74 (112)
+|++|||+|+..++.+++++++++|+.+.+|.+.. .++++..++... .+++|++.. ..++++++++..+|+++
T Consensus 255 ~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~g-r~~~Gs~~G~~~p~~diP~lv~~y~~Gkl~ 333 (366)
T COG1062 255 ADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTG-RVWKGSAFGGARPRSDIPRLVDLYMAGKLP 333 (366)
T ss_pred CCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeecc-ceEEEEeecCCccccchhHHHHHHHcCCCc
Confidence 58999999999999999999999999999998764 456666677665 889998853 27999999999999999
Q ss_pred CccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+++++|++++|+|++|||+.+.+++. .|-|+.+
T Consensus 334 ~d~lvt~~~~Le~INeaf~~m~~G~~--IR~Vi~~ 366 (366)
T COG1062 334 LDRLVTHTIPLEDINEAFDLMHEGKS--IRSVIRF 366 (366)
T ss_pred hhHHhhccccHHHHHHHHHHHhCCce--eeEEecC
Confidence 99999999999999999999999985 8877753
No 8
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.76 E-value=1.4e-17 Score=111.46 Aligned_cols=106 Identities=22% Similarity=0.378 Sum_probs=91.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccCh-hhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPL-VNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~-~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|++|||+|.+..+..++++++++|+++.+|.... .+++. ..++.+++++.|++.+. ++++++++++.+|++++.++
T Consensus 232 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~ 310 (339)
T cd08239 232 ADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE-LTIEVSNDLIRKQRTLIGSWYFSVPDMEECAEFLARHKLEVDRL 310 (339)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC-cccCcHHHHHhCCCEEEEEecCCHHHHHHHHHHHHcCCCChhHe
Confidence 69999999998878899999999999999997554 23343 45788999999998765 78999999999999998889
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++++|+|+|+++||+.+++++ . +|+|+.+
T Consensus 311 i~~~~~l~~~~~a~~~~~~~~-~-gKvvi~~ 339 (339)
T cd08239 311 VTHRFGLDQAPEAYALFAQGE-S-GKVVFVF 339 (339)
T ss_pred EEEEecHHHHHHHHHHHHcCC-c-eEEEEeC
Confidence 999999999999999998876 3 9999875
No 9
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.76 E-value=1.3e-17 Score=113.32 Aligned_cols=105 Identities=18% Similarity=0.227 Sum_probs=92.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++||+|.+.++..++++++++|+++.+|.+.++.++++..++.+++++.|++.+. .++.++++++.+|++++. +
T Consensus 243 ~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~~~--i 320 (375)
T PLN02178 243 MDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAKHKIVSD--I 320 (375)
T ss_pred CcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHHHHHHHHHHhCCCccc--E
Confidence 5999999998878999999999999999999876566778888889999999998755 789999999999998764 4
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++|||+|+++||+.+++++. .+|+|+.+
T Consensus 321 -~~~~l~~~~~A~~~~~~~~~-~gkvvi~~ 348 (375)
T PLN02178 321 -ELIKMSDINSAMDRLAKSDV-RYRFVIDV 348 (375)
T ss_pred -EEEeHHHHHHHHHHHHcCCC-ceEEEEEe
Confidence 57999999999999999874 48999886
No 10
>PLN02827 Alcohol dehydrogenase-like
Probab=99.76 E-value=1.9e-17 Score=112.61 Aligned_cols=108 Identities=16% Similarity=0.210 Sum_probs=92.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCccccCh-hhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQMVSVPL-VNACAKEIDILSCFRYV----NDYPDALEMVASGKCP 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~~~~~~-~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~~ 74 (112)
+|++|||+|.+.++..++++++++ |+++.+|.+..+..++. ..++.+++++.|++... .+++++++++.+|+++
T Consensus 264 ~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i~ 343 (378)
T PLN02827 264 ADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDLPSLVDKYMNKEIM 343 (378)
T ss_pred CCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecCCCchhhhHHHHHHHHHcCCCC
Confidence 599999999887899999999999 99999998765444444 35778999999987532 5789999999999999
Q ss_pred CccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
+.++++++|+|+|+.+||+.+++++. +|+||.+.
T Consensus 344 ~~~~i~~~~~le~~~~A~~~~~~~~~--~k~vi~~~ 377 (378)
T PLN02827 344 IDEFITHNLSFDEINKAFELMREGKC--LRCVIHMP 377 (378)
T ss_pred hHHheEEEecHHHHHHHHHHHHCCCc--eEEEEEec
Confidence 88889999999999999999998875 89999864
No 11
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.76 E-value=1.9e-17 Score=111.51 Aligned_cols=105 Identities=19% Similarity=0.285 Sum_probs=91.6
Q ss_pred cEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCcccee
Q psy12355 2 MLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLIT 80 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~~ 80 (112)
|++|||+|++.++..++++++++|+++.+|.+..+.++++..++.++.++.|++.+. .+++++++++++|++++.++++
T Consensus 243 d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~~g~i~~~~~i~ 322 (349)
T TIGR03201 243 WKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRYPAALDLVLDGKIQLGPFVE 322 (349)
T ss_pred CEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHHHHHHHHHHcCCCCcccceE
Confidence 589999999888889999999999999999876556677777888889999988654 7899999999999998877776
Q ss_pred eeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 81 HNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+|||+|+++||+.+.+++. .+|+++.
T Consensus 323 -~~~l~~~~~A~~~~~~~~~-~~k~~~~ 348 (349)
T TIGR03201 323 -RRPLDQIEHVFAAAHHHKL-KRRAILT 348 (349)
T ss_pred -EecHHHHHHHHHHHHcCCc-cceEEec
Confidence 6999999999999999884 4898875
No 12
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.75 E-value=1.1e-17 Score=112.46 Aligned_cols=108 Identities=17% Similarity=0.259 Sum_probs=88.9
Q ss_pred CcEEEEccc---ChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcC---CC
Q psy12355 1 MMLYLDPLG---TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASG---KC 73 (112)
Q Consensus 1 ~D~v~d~~g---~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g---~~ 73 (112)
+|++|||+| .+.++.+++++++++|+++.+|.+..+.++++..++.+++++.|+..+. .+++++++++.++ +.
T Consensus 223 ~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~ 302 (341)
T cd08237 223 VDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFERAVELLSRNPEVAE 302 (341)
T ss_pred CcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHHHHHHHHHhCCcccC
Confidence 699999999 4568999999999999999999866566777778899999999988754 7799999999999 34
Q ss_pred CCccceeeeeCcc---cHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 74 PVRKLITHNFKLE---EAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 74 ~~~~~~~~~~~l~---~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
+++++++++|+++ ++.++++...++. .+|+|+.++
T Consensus 303 ~l~~~i~~~~~l~~l~~~~~a~~~~~~~~--~gKvvi~~~ 340 (341)
T cd08237 303 YLRKLVGGVFPVRSINDIHRAFESDLTNS--WGKTVMEWE 340 (341)
T ss_pred ChHHHhccccccccHHHHHHHHHHHhhcC--cceEEEEee
Confidence 6788999999985 5666666655543 399999875
No 13
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.75 E-value=1.4e-17 Score=112.96 Aligned_cols=105 Identities=25% Similarity=0.400 Sum_probs=91.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~ 74 (112)
+|++|||+|.+.++..++++++++|+++.+|.... ...++...++.+++++.|++.+ ..++.++++++.+|+++
T Consensus 260 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~l~~~g~i~ 339 (371)
T cd08281 260 VDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRDIPRYLALYLSGRLP 339 (371)
T ss_pred CCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCChHHHHHHHHHHHHcCCCC
Confidence 59999999988889999999999999999997643 4567777889999999998864 26789999999999999
Q ss_pred CccceeeeeCcccHHHHHHHHhcCCCCceEEE
Q psy12355 75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIM 106 (112)
Q Consensus 75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v 106 (112)
+.++++++|+|+|+++||+.+++++. .+|++
T Consensus 340 ~~~~i~~~~~l~~~~~A~~~~~~~~~-~~~vi 370 (371)
T cd08281 340 VDKLLTHRLPLDEINEGFDRLAAGEA-VRQVI 370 (371)
T ss_pred chhheeeeecHHHHHHHHHHHhCCCc-eeeee
Confidence 88899999999999999999999884 35554
No 14
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.75 E-value=2.7e-17 Score=111.03 Aligned_cols=106 Identities=17% Similarity=0.384 Sum_probs=91.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~ 74 (112)
+|+++||+|++.++..++++++++|+++.+|.... ...+++..++.+++++.+++.. ..+++++++++++|+++
T Consensus 246 ~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~g~l~ 325 (358)
T TIGR03451 246 ADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERDFPMLVDLYLQGRLP 325 (358)
T ss_pred CCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHHHHHHHHHHHcCCCC
Confidence 58999999988889999999999999999997654 3567777888899999988642 26789999999999999
Q ss_pred CccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+.++++++||++|+.+||+.+.+++. .|+++.
T Consensus 326 ~~~~i~~~~~l~~~~~A~~~~~~~~~--~k~~~~ 357 (358)
T TIGR03451 326 LDAFVTERIGLDDVEEAFDKMHAGDV--LRSVVE 357 (358)
T ss_pred chheEEEEecHHHHHHHHHHHhCCCc--ceeEEe
Confidence 88889999999999999999998875 688764
No 15
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.74 E-value=3.1e-17 Score=112.59 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=93.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-C--ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-Q--MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVR 76 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~--~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~ 76 (112)
+|+++|++|.+.++..++++++++|+++.++... . +.++++..++.+++++.|++... .+++++++++++|++++.
T Consensus 258 ~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~ 337 (410)
T cd08238 258 FDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMKEAIDLMAAGKLNPA 337 (410)
T ss_pred CCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHHHHHHHHHcCCCchh
Confidence 5899999998889999999999999988775432 2 35677778899999999988654 789999999999999998
Q ss_pred cceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 77 KLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 77 ~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
++++++|||+|+++||+.+. ++ ..+|+|+.++
T Consensus 338 ~~it~~~~l~~~~~A~~~~~-~~-~~gKvvl~~~ 369 (410)
T cd08238 338 RMVTHIGGLNAAAETTLNLP-GI-PGGKKLIYTQ 369 (410)
T ss_pred hcEEEEecHHHHHHHHHHhh-cc-CCceEEEECC
Confidence 89999999999999999999 55 3499999863
No 16
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.74 E-value=5.5e-17 Score=109.63 Aligned_cols=107 Identities=16% Similarity=0.170 Sum_probs=92.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|++|||+|.+.++..++++++++|+++.+|......+++...++.+++++.|++... .++.++++++++|+++ +++
T Consensus 245 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~--~~i 322 (357)
T PLN02514 245 LDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEKGLT--SMI 322 (357)
T ss_pred CcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEecCCHHHHHHHHHHHHhCCCc--CcE
Confidence 5999999998788999999999999999999876556777788889999999998755 6899999999999764 455
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHCRQ 111 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~ 111 (112)
++|||+|+.+||+.+.+++. .+|+++.++.
T Consensus 323 -~~~~l~~~~~A~~~~~~~~~-~gk~v~~~~~ 352 (357)
T PLN02514 323 -EVVKMDYVNTAFERLEKNDV-RYRFVVDVAG 352 (357)
T ss_pred -EEEcHHHHHHHHHHHHcCCC-ceeEEEEccc
Confidence 57999999999999999874 4899998754
No 17
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.73 E-value=6.1e-17 Score=109.55 Aligned_cols=105 Identities=15% Similarity=0.210 Sum_probs=90.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|++||++|.+.++.+++++++++|+++.+|....+.++++..++.++..+.|++.+. .+++++++++.+|++++. +
T Consensus 248 ~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~g~i~~~--~ 325 (360)
T PLN02586 248 MDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAKHNITAD--I 325 (360)
T ss_pred CCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcCcCCHHHHHHHHHHHHhCCCCCc--E
Confidence 5999999998778999999999999999999765566777777888898888887654 689999999999998753 4
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++|+|+|+++||+.+.+++. .+|+|+.+
T Consensus 326 -~~~~l~~~~~A~~~~~~~~~-~gkvvi~~ 353 (360)
T PLN02586 326 -ELIRMDEINTAMERLAKSDV-RYRFVIDV 353 (360)
T ss_pred -EEEeHHHHHHHHHHHHcCCC-cEEEEEEc
Confidence 57999999999999999874 48999876
No 18
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.73 E-value=8.4e-17 Score=108.23 Aligned_cols=108 Identities=21% Similarity=0.357 Sum_probs=95.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++||+|.+.++..++++++++|+++.+|....+.++++..+..+++++.+++.+. ++++++++++.+|++++.+++
T Consensus 242 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~l~~~~~i 321 (351)
T cd08233 242 VDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEVIDLLASGKIDAEPLI 321 (351)
T ss_pred CCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEeccCcchHHHHHHHHHcCCCChHHhe
Confidence 5899999988778999999999999999999766666778888889999999998664 889999999999999888888
Q ss_pred eeeeCcccH-HHHHHHHhcCCCCceEEEEe
Q psy12355 80 THNFKLEEA-VEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 80 ~~~~~l~~~-~~a~~~~~~~~~~~~k~v~~ 108 (112)
+++|+++|+ ++||+.+.+++...+|+||.
T Consensus 322 ~~~~~l~e~~~~a~~~~~~~~~~~~k~v~~ 351 (351)
T cd08233 322 TSRIPLEDIVEKGFEELINDKEQHVKILVS 351 (351)
T ss_pred EEEecHHHHHHHHHHHHHhCCCCceEEEeC
Confidence 999999996 79999999988435999873
No 19
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.71 E-value=1.4e-16 Score=107.45 Aligned_cols=106 Identities=20% Similarity=0.235 Sum_probs=88.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccC----hhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVP----LVNACAKEIDILSCFRYV-NDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~----~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~ 73 (112)
+|++|||+|.+..+..++++++++|+++.+|...+ ..+++ ...++.+++++.|++... +++.++++++.++.+
T Consensus 239 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~~~~ 318 (355)
T cd08230 239 FDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQAVEDLAQWKY 318 (355)
T ss_pred CCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHHHHHHHHhccc
Confidence 69999999988889999999999999999997654 44555 346788999999987654 789999999998872
Q ss_pred ----CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 74 ----PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 74 ----~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+++++++++|+++|+++||+.++++. .|+++.+
T Consensus 319 ~~~~~~~~~i~~~~~l~~~~~a~~~~~~~~---~K~v~~~ 355 (355)
T cd08230 319 RWPGVLERLITRRVPLEEFAEALTEKPDGE---IKVVIEW 355 (355)
T ss_pred ccccchHHheeeeecHHHHHHHHHhcccCC---eEEEeeC
Confidence 35678899999999999999987543 7999875
No 20
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.71 E-value=1.5e-16 Score=108.79 Aligned_cols=108 Identities=19% Similarity=0.210 Sum_probs=85.4
Q ss_pred CcEEEEcccCh--------------HHHHHHHhhccCCcEEEEEecCC-C-cc-----------ccChhhhhhcCeeEEe
Q psy12355 1 MMLYLDPLGTE--------------NCLTLGINVTKMGGKLMLVGMGP-Q-MV-----------SVPLVNACAKEIDILS 53 (112)
Q Consensus 1 ~D~v~d~~g~~--------------~~~~~~~~~l~~~G~iv~~g~~~-~-~~-----------~~~~~~~~~~~~~l~g 53 (112)
+|++|||+|.+ .++.+++++++++|+++.+|.+. + .. ++....++.+++++.|
T Consensus 255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~g 334 (393)
T TIGR02819 255 VDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSIRFGLGWAKSHSFHT 334 (393)
T ss_pred CcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCcccccccccccccccccchHHhhccCceEEe
Confidence 58999999986 47999999999999999999863 2 21 2223445567777777
Q ss_pred EeccC-CCHHHHHHHHHcCCCCCcccee-eeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 54 CFRYV-NDYPDALEMVASGKCPVRKLIT-HNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 54 ~~~~~-~~~~~~~~~~~~g~~~~~~~~~-~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
..... ..+.++++++.+|++++.++++ ++|||+|+++||+.+.+++. .|+++.++
T Consensus 335 ~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~~~a~~~~~~~~~--~Kvvi~~~ 391 (393)
T TIGR02819 335 GQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDAPEGYAEFDAGAA--KKFVIDPH 391 (393)
T ss_pred ccCChhhhHHHHHHHHHcCCCCHHHceecceecHHHHHHHHHHHhhCCc--eEEEEeCC
Confidence 54333 3347899999999999988887 68999999999999988764 99999874
No 21
>PLN02740 Alcohol dehydrogenase-like
Probab=99.70 E-value=3e-16 Score=106.83 Aligned_cols=105 Identities=18% Similarity=0.266 Sum_probs=87.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCc--cccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQM--VSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~--~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~ 73 (112)
+|++|||+|.+.++..++.+++++ |+++.+|.+..+ ++++...+ .+++++.|++... .+++++++++.+|++
T Consensus 269 ~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~i 347 (381)
T PLN02740 269 VDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMEL-FDGRSITGSVFGDFKGKSQLPNLAKQCMQGVV 347 (381)
T ss_pred CCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHH-hcCCeEEEEecCCCCcHHHHHHHHHHHHcCCC
Confidence 699999999988899999999997 999999986543 33443333 4788999887532 468999999999999
Q ss_pred CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
++.++++++|+|+|+++|++.+.+++. .|++|.
T Consensus 348 ~~~~~it~~~~l~e~~~A~~~~~~~~~--~k~~~~ 380 (381)
T PLN02740 348 NLDGFITHELPFEKINEAFQLLEDGKA--LRCLLH 380 (381)
T ss_pred ChHHheeEEecHHHHHHHHHHHHCCCc--eeEEEe
Confidence 988899999999999999999998874 899885
No 22
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.68 E-value=9.3e-16 Score=102.70 Aligned_cols=103 Identities=17% Similarity=0.119 Sum_probs=88.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|++++++|.+.++..++++++++|+++.+|...+ ..++++..++.+++++.+++... .++.++++++.+|+++ +
T Consensus 224 ~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~---~ 300 (329)
T TIGR02822 224 LDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADAREFLELAAQHGVR---V 300 (329)
T ss_pred ceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCCHHHHHHHHHHHHhCCCe---e
Confidence 47889988888899999999999999999997543 34567777888999999988654 6789999999999885 3
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
++++|+|+|+++||+.+.+++ ..+|+|+
T Consensus 301 i~~~~~l~~~~~A~~~~~~~~-~~Gkvvl 328 (329)
T TIGR02822 301 TTHTYPLSEADRALRDLKAGR-FDGAAVL 328 (329)
T ss_pred EEEEEeHHHHHHHHHHHHcCC-CceEEEe
Confidence 678999999999999999988 4599887
No 23
>PRK10083 putative oxidoreductase; Provisional
Probab=99.66 E-value=3.1e-15 Score=100.08 Aligned_cols=111 Identities=19% Similarity=0.340 Sum_probs=91.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT 80 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (112)
+|++|||+|.+.++..++++++++|+++.+|....+..++...+..+++++.+.......++++++++.+|++++.++++
T Consensus 229 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~ 308 (339)
T PRK10083 229 PTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLIT 308 (339)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEEEecChhhHHHHHHHHHcCCCChHHhee
Confidence 47999999987789999999999999999997654444455555678888888765557899999999999988766678
Q ss_pred eeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355 81 HNFKLEEAVEAFKTASKKADDTIKIMIHCRQ 111 (112)
Q Consensus 81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~ 111 (112)
+.|+++++++|++.+.+++...+|+++.+.+
T Consensus 309 ~~~~l~~~~~a~~~~~~~~~~~~kvvv~~~~ 339 (339)
T PRK10083 309 HTFDFQHVADAIELFEKDQRHCCKVLLTFAE 339 (339)
T ss_pred eeecHHHHHHHHHHHhcCCCceEEEEEecCC
Confidence 8999999999999998655345999998764
No 24
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.65 E-value=3.1e-15 Score=101.49 Aligned_cols=106 Identities=18% Similarity=0.297 Sum_probs=85.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~ 73 (112)
+|++|||+|++.++.+++++++++ |+++.+|.+.. +.+++...++. +..+.|++.. ..++.++++++.+|++
T Consensus 256 ~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~g~i 334 (368)
T TIGR02818 256 VDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLVT-GRVWRGSAFGGVKGRTELPGIVEQYMKGEI 334 (368)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHhc-cceEEEeeccCCCcHHHHHHHHHHHHCCCC
Confidence 589999999888899999999996 99999997642 34444444443 4456776542 2578999999999999
Q ss_pred CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++.++++++|||+|+++||+.+++++. .|+++.+
T Consensus 335 ~~~~~it~~~~l~~~~~A~~~~~~~~~--~k~~v~~ 368 (368)
T TIGR02818 335 ALDDFVTHTMPLEDINEAFDLMHEGKS--IRTVIHY 368 (368)
T ss_pred CchhheeEEecHHHHHHHHHHHhCCCc--eeEEeeC
Confidence 988899999999999999999988764 8999864
No 25
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.65 E-value=2.4e-15 Score=101.94 Aligned_cols=104 Identities=17% Similarity=0.246 Sum_probs=87.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~ 73 (112)
+|+++||+|.+..+..++++++++ |+++.+|.... .++++...+ .+++++.|++... .+++++++++.+|++
T Consensus 258 ~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~-~~~~~i~g~~~~~~~~~~~~~~~~~~~~~g~~ 336 (369)
T cd08301 258 VDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNL-LNGRTLKGTLFGGYKPKTDLPNLVEKYMKKEL 336 (369)
T ss_pred CCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHH-hcCCeEEEEecCCCChHHHHHHHHHHHHcCCC
Confidence 589999999888899999999996 99999997653 344454444 4789999987532 478899999999999
Q ss_pred CCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
++.++++++|||+|+++||+.+.+++. .|+++
T Consensus 337 ~~~~~i~~~~~l~~~~~A~~~~~~~~~--~k~~~ 368 (369)
T cd08301 337 ELEKFITHELPFSEINKAFDLLLKGEC--LRCIL 368 (369)
T ss_pred CcHHheeeeecHHHHHHHHHHHHCCCc--eeEEe
Confidence 888889999999999999999999885 79887
No 26
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.65 E-value=3e-15 Score=101.43 Aligned_cols=105 Identities=21% Similarity=0.276 Sum_probs=87.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGKCP 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~~ 74 (112)
+|++|||+|.+..+..++++++++ |+++.+|...+ ..+++...++. ++++.|++... .++.++++++++++++
T Consensus 255 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (365)
T cd08277 255 VDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVPKLVSKYMNKKFD 333 (365)
T ss_pred CCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCChHHHHHHHHHHHHCCCcC
Confidence 589999999888889999999986 99999997653 44566656654 78888887542 4689999999999998
Q ss_pred CccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+.++++++|+|+|+++||+.+++++. .|++++
T Consensus 334 ~~~~i~~~~~l~~~~~A~~~~~~~~~--~k~~i~ 365 (365)
T cd08277 334 LDELITHVLPFEEINKGFDLMKSGEC--IRTVIT 365 (365)
T ss_pred hhHheeeEEchhhHHHHHHHHHCCCC--ceEeeC
Confidence 88899999999999999999988873 898874
No 27
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.65 E-value=1.8e-15 Score=101.96 Aligned_cols=107 Identities=19% Similarity=0.196 Sum_probs=87.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-cc-----ccChhhhhhcCeeEEeEeccC------CCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MV-----SVPLVNACAKEIDILSCFRYV------NDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~-----~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~~ 68 (112)
+|+++||+|. .++..++++++++|+++.+|.... .. .++...++.+++++.|++.+. +.++++++++
T Consensus 229 vD~v~d~vG~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~l~ 307 (348)
T PLN03154 229 IDIYFDNVGG-DMLDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLHLFPQFLENVSRYY 307 (348)
T ss_pred cEEEEECCCH-HHHHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHHHHHHHHHHHHHHH
Confidence 5899999986 578999999999999999997543 22 135566888999999987532 4578899999
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ 111 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~ 111 (112)
++|++++ .+..+|+|+++++|++.+++++. .||+|+.+.+
T Consensus 308 ~~G~l~~--~~~~~~~L~~~~~A~~~l~~g~~-~GKvVl~~~~ 347 (348)
T PLN03154 308 KQGKIVY--IEDMSEGLESAPAALVGLFSGKN-VGKQVIRVAK 347 (348)
T ss_pred HCCCccC--ceecccCHHHHHHHHHHHHcCCC-CceEEEEecC
Confidence 9998865 46678999999999999999984 5999999865
No 28
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.62 E-value=1e-14 Score=98.93 Aligned_cols=105 Identities=18% Similarity=0.264 Sum_probs=83.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~ 73 (112)
+|+++||+|++.++..++++++++ |+++.+|.... ...++...+. ++..+.++... ..+++++++++.+|++
T Consensus 257 ~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~l 335 (368)
T cd08300 257 VDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWKSRSQVPKLVEDYMKGKI 335 (368)
T ss_pred CcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccCcHHHHHHHHHHHHcCCC
Confidence 599999999888899999999997 99999997642 3333443343 33456665432 3678999999999999
Q ss_pred CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
++.++++++|+|+|+++||+.+.+++. .|+++.
T Consensus 336 ~~~~~i~~~~~le~~~~A~~~~~~~~~--~k~~~~ 368 (368)
T cd08300 336 KVDEFITHTMPLDEINEAFDLMHAGKS--IRTVVK 368 (368)
T ss_pred ChhhceeeeEcHHHHHHHHHHHhCCCC--ceeeeC
Confidence 988899999999999999999988874 898873
No 29
>KOG0023|consensus
Probab=99.62 E-value=5.6e-15 Score=96.92 Aligned_cols=105 Identities=21% Similarity=0.246 Sum_probs=93.3
Q ss_pred cEEEEccc--ChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc-CCCHHHHHHHHHcCCCCCccc
Q psy12355 2 MLYLDPLG--TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 2 D~v~d~~g--~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~g~~~~~~~ 78 (112)
|.++|++. +...+..+++++|++|++|.+|++..+..++...++.+.++|.|+... ..+.+|++++.++|.++..
T Consensus 248 dg~~~~v~~~a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~Ldf~a~~~ik~~-- 325 (360)
T KOG0023|consen 248 DGGIDTVSNLAEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEALDFVARGLIKSP-- 325 (360)
T ss_pred cCcceeeeeccccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHHHHHHcCCCcCc--
Confidence 56777776 667899999999999999999999988999999999999999999864 4999999999999988663
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
+ +..+++++++||+++.+++.+ .|.|++++
T Consensus 326 I-E~v~~~~v~~a~erm~kgdV~-yRfVvD~s 355 (360)
T KOG0023|consen 326 I-ELVKLSEVNEAYERMEKGDVR-YRFVVDVS 355 (360)
T ss_pred e-EEEehhHHHHHHHHHHhcCee-EEEEEEcc
Confidence 4 679999999999999999975 88898875
No 30
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.61 E-value=1.2e-14 Score=98.19 Aligned_cols=107 Identities=21% Similarity=0.389 Sum_probs=90.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcC--CCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASG--KCPV 75 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g--~~~~ 75 (112)
+|+++||+|....+..++++++++|+++.+|.... ...++...++.+++++.+++.+. ++++++++++.++ .+++
T Consensus 250 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (361)
T cd08231 250 ADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVRFLERTQDRFPF 329 (361)
T ss_pred CcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCCchhHHHHHHHHHhccCcCCc
Confidence 58999999887788999999999999999996543 34556566789999999988654 7899999999998 6677
Q ss_pred ccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 76 RKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 76 ~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
.++++++|+++|+++|++.+.++. . +|++|.+
T Consensus 330 ~~~i~~~~~l~~~~~a~~~~~~~~-~-~k~vi~~ 361 (361)
T cd08231 330 AELVTHRYPLEDINEALELAESGT-A-LKVVIDP 361 (361)
T ss_pred hhheeeeeeHHHHHHHHHHHHcCC-c-eEEEeCC
Confidence 778899999999999999998877 3 8999864
No 31
>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A.
Probab=99.61 E-value=2.9e-16 Score=91.96 Aligned_cols=98 Identities=24% Similarity=0.320 Sum_probs=65.1
Q ss_pred CcEEEEccc--ChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhh--cCeeEEeEec---c--C-CCHHHHHHHHHc
Q psy12355 1 MMLYLDPLG--TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACA--KEIDILSCFR---Y--V-NDYPDALEMVAS 70 (112)
Q Consensus 1 ~D~v~d~~g--~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~--~~~~l~g~~~---~--~-~~~~~~~~~~~~ 70 (112)
+|+||||+| ....+..+.++| ++|+++.+|. ......... ...+...... + . +.++++++++++
T Consensus 20 ~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~ 93 (127)
T PF13602_consen 20 VDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-----DLPSFARRLKGRSIRYSFLFSVDPNAIRAEALEELAELVAE 93 (127)
T ss_dssp EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-----HHHHHHHHHHCHHCEEECCC-H--HHHHHHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-----cccchhhhhcccceEEEEEEecCCCchHHHHHHHHHHHHHC
Confidence 699999998 545446677888 9999999983 111111111 2222222221 1 2 459999999999
Q ss_pred CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
|++++ .+.++|||+++.+|++.+++++. .||+||
T Consensus 94 G~l~~--~i~~~f~l~~~~~A~~~l~~~~~-~GKvVl 127 (127)
T PF13602_consen 94 GKLKP--PIDRVFPLEEAPEAHERLESGHA-RGKVVL 127 (127)
T ss_dssp TSS-----EEEEEEGGGHHHHHHHHHCT---SSEEEE
T ss_pred CCeEE--eeccEECHHHHHHHHHHHHhCCC-CCeEeC
Confidence 98865 58889999999999999999995 499986
No 32
>KOG0022|consensus
Probab=99.59 E-value=2.2e-14 Score=94.05 Aligned_cols=105 Identities=16% Similarity=0.248 Sum_probs=89.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCC--ccccChhhhhhcCeeEEeEec----cCCCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFR----YVNDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~----~~~~~~~~~~~~~~g~~ 73 (112)
+|+.|||+|+..++.+++.+.++| |+-+.+|.... .+++++++++. +.++.|+.- ...+++.+.+...++++
T Consensus 263 vDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~-GR~~~Gs~FGG~K~~~~iP~lV~~y~~~~l 341 (375)
T KOG0022|consen 263 VDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVT-GRTWKGSAFGGFKSKSDIPKLVKDYMKKKL 341 (375)
T ss_pred ceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhcc-ccEEEEEecccccchhhhhHHHHHHHhCcc
Confidence 689999999999999999999999 99999998775 45566666654 555666542 23789999999999999
Q ss_pred CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+++++|||++||+++++||+.|.+|+. .|.|+.
T Consensus 342 ~ld~~ITh~l~f~~In~AF~ll~~Gks--iR~vl~ 374 (375)
T KOG0022|consen 342 NLDEFITHELPFEEINKAFDLLHEGKS--IRCVLW 374 (375)
T ss_pred chhhhhhcccCHHHHHHHHHHHhCCce--EEEEEe
Confidence 999999999999999999999999985 788775
No 33
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.56 E-value=8.7e-14 Score=92.44 Aligned_cols=105 Identities=25% Similarity=0.380 Sum_probs=88.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT 80 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (112)
+|+++||+|....+..++++++++|+++..|.......+++..+..++.++.+.+.. .++++++++.++++++.++++
T Consensus 215 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~l~~~~~~~ 292 (319)
T cd08242 215 FDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRCG--PFAPALRLLRKGLVDVDPLIT 292 (319)
T ss_pred CCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEEEecc--cHHHHHHHHHcCCCChhhceE
Confidence 689999998877889999999999999998765555666777788899999887643 489999999999997777788
Q ss_pred eeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 81 HNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+.|+++++++|++.+..++. +|+|+.+
T Consensus 293 ~~~~l~~~~~a~~~~~~~~~--~k~vi~~ 319 (319)
T cd08242 293 AVYPLEEALEAFERAAEPGA--LKVLLRP 319 (319)
T ss_pred EEEeHHHHHHHHHHHhcCCc--eEEEeCC
Confidence 99999999999999987663 8998864
No 34
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.56 E-value=1.1e-14 Score=95.54 Aligned_cols=88 Identities=17% Similarity=0.279 Sum_probs=77.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC--CccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHc--CCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVAS--GKCPV 75 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~--g~~~~ 75 (112)
+|++|||+|.+.++..++++++++|+++.+|... .+.++++..++.+++++.|++.+. .+++++++++.+ +++++
T Consensus 188 ~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~~~l~~~~~~~~~ 267 (280)
T TIGR03366 188 VDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYEPRHLDQAVRFLAANGQRFPF 267 (280)
T ss_pred CCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCCCHHHHHHHHHHHHhhCCCCCH
Confidence 5999999999888999999999999999999653 356788888999999999998765 789999999998 46778
Q ss_pred ccceeeeeCcccH
Q psy12355 76 RKLITHNFKLEEA 88 (112)
Q Consensus 76 ~~~~~~~~~l~~~ 88 (112)
+++++++|||+|+
T Consensus 268 ~~~it~~~~l~~~ 280 (280)
T TIGR03366 268 EELVGKPFPLADV 280 (280)
T ss_pred HHHhhcccccccC
Confidence 8899999999874
No 35
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.54 E-value=2e-13 Score=92.44 Aligned_cols=107 Identities=39% Similarity=0.710 Sum_probs=89.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT 80 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (112)
+|+++||+|.+.++..++++++++|+++.+|.......++...+..+++++.+++.+...++++++++.++++++.++++
T Consensus 255 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 334 (364)
T PLN02702 255 IDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRYRNTWPLCLEFLRSGKIDVKPLIT 334 (364)
T ss_pred CCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEeccChHHHHHHHHHHHcCCCCchHheE
Confidence 58999999977889999999999999999996544444556678889999999886667889999999999987666677
Q ss_pred eeeCc--ccHHHHHHHHhcCCCCceEEEEe
Q psy12355 81 HNFKL--EEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 81 ~~~~l--~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
++|++ +++++|++.+.+++ ..+|+++.
T Consensus 335 ~~~~l~~~~~~~a~~~~~~~~-~~~kvv~~ 363 (364)
T PLN02702 335 HRFGFSQKEVEEAFETSARGG-NAIKVMFN 363 (364)
T ss_pred EEeccChHHHHHHHHHHhcCC-CceEEEEe
Confidence 88665 79999999998876 45899885
No 36
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.54 E-value=2e-13 Score=91.60 Aligned_cols=109 Identities=29% Similarity=0.417 Sum_probs=90.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT 80 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (112)
+|+++||+|....+..++++++++|+++.+|......++++..++.+++++.+.......+.++.++++++.+++.++++
T Consensus 236 ~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 315 (345)
T cd08286 236 VDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVDTNTTPMLLKLVSSGKLDPSKLVT 315 (345)
T ss_pred CCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEeecCchhhHHHHHHHHHcCCCChHHcEE
Confidence 58999999887788999999999999999997655566677667889999988654446788899999999988776678
Q ss_pred eeeCcccHHHHHHHHhcCC-CCceEEEEee
Q psy12355 81 HNFKLEEAVEAFKTASKKA-DDTIKIMIHC 109 (112)
Q Consensus 81 ~~~~l~~~~~a~~~~~~~~-~~~~k~v~~~ 109 (112)
++|+++++++|++.+.... ++..|++|.+
T Consensus 316 ~~~~l~~~~~a~~~~~~~~~~~~~k~~~~~ 345 (345)
T cd08286 316 HRFKLSEIEKAYDTFSAAAKHKALKVIIDF 345 (345)
T ss_pred eEeeHHHHHHHHHHHhccCCCCeeEEEEeC
Confidence 8999999999999998752 2458999864
No 37
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.52 E-value=3.7e-13 Score=90.66 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=85.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc--cccCh--hhhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM--VSVPL--VNACAKEIDILSCFRY--VNDYPDALEMVASGKCP 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--~~~~~--~~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~ 74 (112)
+|+++||+|.+..+..++++++++|+++.+|..... ..++. .....+..++.+.+.. .+.++++++++.+|+++
T Consensus 236 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~i~ 315 (351)
T cd08285 236 VDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVD 315 (351)
T ss_pred CcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCCccccHHHHHHHHHcCCCC
Confidence 589999999887899999999999999999976542 33432 2234566677776643 37899999999999988
Q ss_pred Cccce-eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 75 VRKLI-THNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 75 ~~~~~-~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+..++ .+.++++++++|++.+.+++....|+++.+
T Consensus 316 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 351 (351)
T cd08285 316 PSKLLTHHFFGFDDIEEALMLMKDKPDDLIKPVIIF 351 (351)
T ss_pred hhhceeccccCHHHHHHHHHHHhcccCCeEEEEEeC
Confidence 75444 445899999999999998875569999864
No 38
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.51 E-value=4.9e-13 Score=89.51 Aligned_cols=108 Identities=32% Similarity=0.564 Sum_probs=89.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT 80 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (112)
+|+++||+|....+..++++|+++|+++.+|....+...++..++.+++++.+.......++++++++.+|.+++.+.++
T Consensus 232 vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 311 (339)
T cd08232 232 FDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRFDDEFAEAVRLLAAGRIDVRPLIT 311 (339)
T ss_pred ccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEEEEEecCHHHHHHHHHHHHcCCCCchhhee
Confidence 58999999877778999999999999999986544444455556778888888776567889999999999887766677
Q ss_pred eeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 81 HNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++|+++++++|++.+.++. ..+|+|+.+
T Consensus 312 ~~~~~~~~~~a~~~~~~~~-~~gkvvv~~ 339 (339)
T cd08232 312 AVFPLEEAAEAFALAADRT-RSVKVQLSF 339 (339)
T ss_pred EEecHHHHHHHHHHHHhCC-CceeEEEeC
Confidence 8899999999999998776 459999864
No 39
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.51 E-value=2.7e-13 Score=90.39 Aligned_cols=103 Identities=16% Similarity=0.149 Sum_probs=82.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-cc-ccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MV-SVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASG 71 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~-~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g 71 (112)
+|+++||+|... ...++++++++|+++.+|.... .. .++...++.+++++.+++... +.+++++++++ +
T Consensus 213 ~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 290 (324)
T cd08291 213 ATIFFDAVGGGL-TGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLGPEVVKKLKKLVK-T 290 (324)
T ss_pred CcEEEECCCcHH-HHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccCHHHHHHHHHHHh-C
Confidence 589999998765 5778999999999999996543 23 366677888999999987432 35778888887 7
Q ss_pred CCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 72 KCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
.+ .++++++|+|+|+.+||+.+.+++ ..||+++.
T Consensus 291 ~~--~~~i~~~~~l~~~~~a~~~~~~~~-~~Gkvv~~ 324 (324)
T cd08291 291 EL--KTTFASRYPLALTLEAIAFYSKNM-STGKKLLI 324 (324)
T ss_pred cc--ccceeeEEcHHHHHHHHHHHHhCC-CCCeEEeC
Confidence 55 457889999999999999999987 45998873
No 40
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.50 E-value=4.9e-13 Score=89.52 Aligned_cols=104 Identities=18% Similarity=0.213 Sum_probs=87.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++|++|.+..+..++++++++|+++.+|......+++...++.+++++.++.... .++.++++++.++++++ ++
T Consensus 229 ~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--~v 306 (333)
T cd08296 229 AKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKFSALHGVRP--MV 306 (333)
T ss_pred CCEEEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeCcCCHHHHHHHHHHHHhCCCCc--eE
Confidence 5899999987788999999999999999999766556677777889999999987544 77889999999887754 45
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+.|+++++.+|++.+++++ ..+|+|++
T Consensus 307 -~~~~~~~~~~a~~~~~~~~-~~gk~v~~ 333 (333)
T cd08296 307 -ETFPLEKANEAYDRMMSGK-ARFRVVLT 333 (333)
T ss_pred -EEEEHHHHHHHHHHHHCCC-CceeEEeC
Confidence 5799999999999999887 45898874
No 41
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.49 E-value=5.7e-13 Score=90.98 Aligned_cols=109 Identities=28% Similarity=0.408 Sum_probs=88.9
Q ss_pred CcEEEEcccC---------------------hHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC
Q psy12355 1 MMLYLDPLGT---------------------ENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV 58 (112)
Q Consensus 1 ~D~v~d~~g~---------------------~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~ 58 (112)
+|+++||+|+ ...+..++++++++|+++.+|.... ...++...++.+++++.+.....
T Consensus 255 ~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 334 (386)
T cd08283 255 PDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAMNKGLTLRMGQTHV 334 (386)
T ss_pred CCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHHhCCcEEEeccCCc
Confidence 5899999975 2468889999999999999997654 34456556778899988876443
Q ss_pred -CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 59 -NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 59 -~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+.+.++++++.++++++.+++++.|+++++.+|++.+..+..+.+|+++.+
T Consensus 335 ~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~~~~~ 386 (386)
T cd08283 335 QRYLPRLLELIESGELDPSFIITHRLPLEDAPEAYKIFDKKEDGCIKVVLKP 386 (386)
T ss_pred hHHHHHHHHHHHcCCCChhHceEEEecHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 679999999999998876667788999999999999988875568999853
No 42
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.48 E-value=5.7e-13 Score=89.34 Aligned_cols=104 Identities=16% Similarity=0.217 Sum_probs=87.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++||+|....+.+++++++++|+++.+|.......+++..++.+++++.+++... +.++++++++.++++++ .+
T Consensus 233 ~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~--~~ 310 (337)
T cd05283 233 LDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGIKP--WV 310 (337)
T ss_pred ceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEecccCHHHHHHHHHHHHhCCCcc--ce
Confidence 5899999988766899999999999999999765544667777788999999988655 78999999999998764 34
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+.|+++++++|++.+.+++. .+|+|++
T Consensus 311 -~~~~~~~~~~a~~~~~~~~~-~~k~v~~ 337 (337)
T cd05283 311 -EVIPMDGINEALERLEKGDV-RYRFVLD 337 (337)
T ss_pred -EEEEHHHHHHHHHHHHcCCC-cceEeeC
Confidence 67999999999999999884 4898863
No 43
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.48 E-value=7.2e-13 Score=89.21 Aligned_cols=106 Identities=27% Similarity=0.467 Sum_probs=86.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhh-hhcCeeEEeEeccCCCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNA-CAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++|++|.+..+..++++++++|+++.+|.......++...+ ..+++++.++......+.++++++.+|.+++.+++
T Consensus 244 vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~g~l~~~~~~ 323 (350)
T cd08256 244 CDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLGPYCYPIAIDLIASGRLPTDGIV 323 (350)
T ss_pred CCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccccEEEEeccCchhHHHHHHHHHcCCCChhHhe
Confidence 59999999876778999999999999999986554444454443 36778888877655779999999999998876557
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
++.|+++++.+|++.+++++ ..+|+++
T Consensus 324 ~~~~~l~~~~~a~~~~~~~~-~~~kvv~ 350 (350)
T cd08256 324 THQFPLEDFEEAFELMARGD-DSIKVVL 350 (350)
T ss_pred EEEeEHHHHHHHHHHHHhCC-CceEEeC
Confidence 78899999999999999887 4588874
No 44
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.47 E-value=1.2e-12 Score=87.99 Aligned_cols=107 Identities=48% Similarity=0.780 Sum_probs=88.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCcccee
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLIT 80 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~ 80 (112)
+|+++||+|....+..++++++++|+++.+|.......+++..+..+++++.+.+.....+.++++++.++.+.+.+.++
T Consensus 235 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 314 (343)
T cd05285 235 PDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGVFRYANTYPTAIELLASGKVDVKPLIT 314 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEEeccChHHHHHHHHHHHcCCCCchHhEE
Confidence 59999999887678999999999999999997654445566667788888888776667889999999999876555567
Q ss_pred eeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 81 HNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 81 ~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
+.|+++++.+|++.+.++..+.+|+++
T Consensus 315 ~~~~l~~~~~a~~~~~~~~~~~~k~~~ 341 (343)
T cd05285 315 HRFPLEDAVEAFETAAKGKKGVIKVVI 341 (343)
T ss_pred EEEeHHHHHHHHHHHHcCCCCeeEEEE
Confidence 789999999999999887534599987
No 45
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.47 E-value=1.1e-12 Score=88.03 Aligned_cols=107 Identities=18% Similarity=0.331 Sum_probs=89.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++||+|.+..+..++++++++|+++.+|....+..+++...+.+++++.+..... ..++++++++.++.+++.+++
T Consensus 238 ~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (345)
T cd08287 238 ADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRNVGLAGGPAPVRRYLPELLDDVLAGRINPGRVF 317 (345)
T ss_pred CCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcceEEEEecCCcHHHHHHHHHHHHcCCCCHHHhE
Confidence 5899999988888999999999999999998765445566656678999998865433 789999999999998876667
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++.++++++.+|++.+.++.. .|++|.+
T Consensus 318 ~~~~~l~~~~~a~~~~~~~~~--~k~~~~~ 345 (345)
T cd08287 318 DLTLPLDEVAEGYRAMDERRA--IKVLLRP 345 (345)
T ss_pred EeeecHHHHHHHHHHHhCCCc--eEEEeCC
Confidence 788999999999999887663 7998853
No 46
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.47 E-value=1.4e-12 Score=87.42 Aligned_cols=107 Identities=21% Similarity=0.372 Sum_probs=85.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++||+|+...+..++++++++|+++.+|.......+.......+++++.++..+. +.++++.+++.+|.+++.+++
T Consensus 234 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~i~~~~~i 313 (341)
T cd08262 234 PAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIRKELTLQFSLGYTPEEFADALDALAEGKVDVAPMV 313 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhhcceEEEEEecccHHHHHHHHHHHHcCCCChHHhe
Confidence 5899999987656888999999999999999654332233333456788887766544 678999999999999876667
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
++.++++++++|++.+.+++ ..+|+|+.
T Consensus 314 ~~~~~l~~~~~a~~~~~~~~-~~~kvvv~ 341 (341)
T cd08262 314 TGTVGLDGVPDAFEALRDPE-HHCKILVD 341 (341)
T ss_pred EEEeeHHHHHHHHHHHhcCC-CceEEEeC
Confidence 78999999999999999887 45998863
No 47
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=99.46 E-value=1.5e-13 Score=80.67 Aligned_cols=70 Identities=27% Similarity=0.463 Sum_probs=64.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVAS 70 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~ 70 (112)
+|++|||+|++.+++.++++++++|+++.+|.+. ...+++...++.+++++.|++.+. ++++++++++++
T Consensus 59 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~la~ 130 (130)
T PF00107_consen 59 VDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQEALQLLAQ 130 (130)
T ss_dssp EEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHHHHHHHH-
T ss_pred ceEEEEecCcHHHHHHHHHHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHHHHHHhcC
Confidence 5899999998999999999999999999999988 578899999999999999999877 899999998864
No 48
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.44 E-value=2.6e-12 Score=86.21 Aligned_cols=107 Identities=21% Similarity=0.400 Sum_probs=86.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChh-hhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCCCcc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLV-NACAKEIDILSCFRY--VNDYPDALEMVASGKCPVRK 77 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~-~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~~~~ 77 (112)
+|+++||+|....+..++++++++|+++.+|......+++.. .++++++++.+.+.. .+.+.++++++.++.+++.+
T Consensus 231 ~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 310 (340)
T TIGR00692 231 VDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDP 310 (340)
T ss_pred CCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEEecCCchhhHHHHHHHHHcCCCChHH
Confidence 589999998877889999999999999999976443444444 577788888876532 25678899999999987656
Q ss_pred ceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++++.++++++.++++.+.++. . +|+|+++
T Consensus 311 ~~~~~~~l~~~~~a~~~~~~~~-~-gkvvv~~ 340 (340)
T TIGR00692 311 IITHKFKFDKFEKGFELMRSGQ-T-GKVILSL 340 (340)
T ss_pred heeeeeeHHHHHHHHHHHhcCC-C-ceEEEeC
Confidence 6778999999999999998776 4 9999874
No 49
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.44 E-value=3.1e-12 Score=85.86 Aligned_cols=107 Identities=15% Similarity=0.311 Sum_probs=86.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC--CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV--NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|++|||+|....+..++++++++|+++.+|.......++...+..+++++.++.... ..+.++++++.++ +++.++
T Consensus 233 ~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 311 (341)
T PRK05396 233 FDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKMSALLQSG-LDLSPI 311 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcceEEEEEEccCccchHHHHHHHHHcC-CChhHh
Confidence 5899999998888999999999999999999765545555567788899988876322 5567788999998 545556
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
+.+.++++++.+|++.+.+++ .+|++++|+
T Consensus 312 ~~~~~~l~~~~~a~~~~~~~~--~gk~vv~~~ 341 (341)
T PRK05396 312 ITHRFPIDDFQKGFEAMRSGQ--SGKVILDWD 341 (341)
T ss_pred eEEEEeHHHHHHHHHHHhcCC--CceEEEecC
Confidence 778899999999999998765 399999875
No 50
>KOG1197|consensus
Probab=99.44 E-value=3.8e-13 Score=86.24 Aligned_cols=107 Identities=17% Similarity=0.299 Sum_probs=84.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEe--ccC-------CCHHHHHHHHHc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCF--RYV-------NDYPDALEMVAS 70 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~--~~~-------~~~~~~~~~~~~ 70 (112)
+|+++|.+|. +++..++.+|++.|.+|.+|...+ .-+++..++..+.+.+.-.. +|- ....+++.++.+
T Consensus 216 Vd~vyDsvG~-dt~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~~el~~~v~rl~alvns 294 (336)
T KOG1197|consen 216 VDAVYDSVGK-DTFAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGEVELVSYVARLFALVNS 294 (336)
T ss_pred ceeeeccccc-hhhHHHHHHhccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCCHHHHHHHHHHHHHHhhc
Confidence 5899999987 669999999999999999998775 34556666666665554332 221 234568888889
Q ss_pred CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355 71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ 111 (112)
Q Consensus 71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~ 111 (112)
|.+++. |.++|||+++.+|++.+++++ ..||+++.+.+
T Consensus 295 g~lk~~--I~~~ypls~vadA~~diesrk-tvGkvlLlp~~ 332 (336)
T KOG1197|consen 295 GHLKIH--IDHVYPLSKVADAHADIESRK-TVGKVLLLPGP 332 (336)
T ss_pred Ccccee--eeeecchHHHHHHHHHHHhhh-ccceEEEeCCc
Confidence 988764 899999999999999999998 46999998765
No 51
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.44 E-value=2.3e-12 Score=86.40 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=82.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-C-ccccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-Q-MVSVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASG 71 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~-~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g 71 (112)
+|+|+|++|. .++..++++++++|+++.+|... . ..+++...+..+.+.+.+..... +.+.++.+++.+|
T Consensus 212 vDvv~D~vG~-~~~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~g 290 (326)
T COG0604 212 VDVVLDTVGG-DTFAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASG 290 (326)
T ss_pred ceEEEECCCH-HHHHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHHHHHHHHHHHHHHHcC
Confidence 6999999976 55888999999999999999866 2 55677777888899988877542 4677799999999
Q ss_pred CCCCccceeeeeCcccHHHHHHHHhcC-CCCceEEEEee
Q psy12355 72 KCPVRKLITHNFKLEEAVEAFKTASKK-ADDTIKIMIHC 109 (112)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~a~~~~~~~-~~~~~k~v~~~ 109 (112)
.+++ .++.+|||+|..++....... + ..||+|+.+
T Consensus 291 ~l~~--~i~~~~~l~e~~~a~a~~~~~~~-~~GKvvl~~ 326 (326)
T COG0604 291 KLKP--VIDRVYPLAEAPAAAAHLLLERR-TTGKVVLKV 326 (326)
T ss_pred CCcc--eeccEechhhhHHHHHHHHcccC-CcceEEEeC
Confidence 8865 577899999965555554444 5 459999864
No 52
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.43 E-value=1.8e-12 Score=86.91 Aligned_cols=105 Identities=20% Similarity=0.176 Sum_probs=82.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-cc-----ccChhhhhhcCeeEEeEeccC------CCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MV-----SVPLVNACAKEIDILSCFRYV------NDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~-----~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~~ 68 (112)
+|+++|++|+ ..+..++++++++|+++.+|.... .. ..+...++++++++.+++... ..++++++++
T Consensus 222 vd~v~d~~g~-~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~l~ 300 (338)
T cd08295 222 IDIYFDNVGG-KMLDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLHRYPEFLEEMSGYI 300 (338)
T ss_pred cEEEEECCCH-HHHHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHHHHHHHHHHHHHHH
Confidence 5899999987 568999999999999999996543 11 134456778888988865422 3467889999
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
.+|++++. +...|+++++.+|++.+.+++. .+|+|+.+
T Consensus 301 ~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~~-~GkvVl~~ 338 (338)
T cd08295 301 KEGKLKYV--EDIADGLESAPEAFVGLFTGSN-IGKQVVKV 338 (338)
T ss_pred HCCCeEce--eecccCHHHHHHHHHHHhcCCC-CceEEEEC
Confidence 99988764 4456999999999999998874 59999864
No 53
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.41 E-value=4.9e-12 Score=84.37 Aligned_cols=105 Identities=24% Similarity=0.412 Sum_probs=88.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++||+|....+..++++++++|+++.+|.......++...++.++.++.+++... ..+.++++++.++.+++.
T Consensus 233 ~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~--- 309 (338)
T cd08254 233 FDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQ--- 309 (338)
T ss_pred ceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEEEEeccCCHHHHHHHHHHHHcCCCccc---
Confidence 5899999988888999999999999999998765555566677888999999877554 788999999999988764
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
.+.++++++.++++.+.+++ ..+|+|+.+
T Consensus 310 ~~~~~~~~~~~a~~~~~~~~-~~~kvv~~~ 338 (338)
T cd08254 310 VETRPLDEIPEVLERLHKGK-VKGRVVLVP 338 (338)
T ss_pred ceeEcHHHHHHHHHHHHcCC-ccceEEEeC
Confidence 46899999999999999887 458998864
No 54
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.41 E-value=5.6e-12 Score=84.52 Aligned_cols=106 Identities=25% Similarity=0.408 Sum_probs=87.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEec-cCCCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFR-YVNDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++||+|.+..+..++++++++|+++.+|.... ....+....+.+++++.+... ..+.+.++++++.++.+++.++
T Consensus 236 ~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 315 (344)
T cd08284 236 ADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRCPVRSLFPELLPLLESGRLDLEFL 315 (344)
T ss_pred CCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecCCcchhHHHHHHHHHcCCCChHHh
Confidence 58999999987789999999999999999997653 444555667778888776543 3378999999999998876656
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+++.++++++.++++.+.+++ . +|+|+.
T Consensus 316 ~~~~~~~~~~~~a~~~~~~~~-~-~k~Vi~ 343 (344)
T cd08284 316 IDHRMPLEEAPEAYRLFDKRK-V-LKVVLD 343 (344)
T ss_pred EeeeecHHHHHHHHHHHhcCC-c-eEEEec
Confidence 778899999999999988876 4 999875
No 55
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.41 E-value=7.1e-12 Score=82.80 Aligned_cols=107 Identities=26% Similarity=0.414 Sum_probs=87.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----CCHHHHHHHHHcCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----NDYPDALEMVASGKCP 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----~~~~~~~~~~~~g~~~ 74 (112)
+|+++||+|....+..++++++++|+++.+|.... +.++++..+.+++.++.++.... +.++++++++.++.++
T Consensus 199 vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 278 (312)
T cd08269 199 ADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLD 278 (312)
T ss_pred CCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEecccCccchhhHHHHHHHHHHcCCCC
Confidence 58999999887778999999999999999996542 45566667788888888765322 5788999999999887
Q ss_pred CccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
+.+++++.|+++++++|++.+.+++.+.+|+++
T Consensus 279 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 311 (312)
T cd08269 279 LGSLLTHEFPLEELGDAFEAARRRPDGFIKGVI 311 (312)
T ss_pred chhheeeeecHHHHHHHHHHHHhCCCCceEEEe
Confidence 654566789999999999999998766799886
No 56
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.40 E-value=5.4e-12 Score=85.61 Aligned_cols=105 Identities=19% Similarity=0.332 Sum_probs=86.8
Q ss_pred CcEEEEcccChHHHHHHHhhcc-CCcEEEEEecCC--CccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTK-MGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~-~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~ 73 (112)
+|+++|++|...++..++++++ ++|+++.+|... ....++...+ .++.++.|++.. ...+.++++++.++.+
T Consensus 254 ~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~~~~~~~l~~~~~l 332 (365)
T cd05279 254 VDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDSVPKLVALYRQKKF 332 (365)
T ss_pred CcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhHHHHHHHHHHcCCc
Confidence 5899999988778999999999 999999999754 3566666666 678888887642 3678899999999998
Q ss_pred CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
++.++++++++++++++|++.+.+++. .|++++
T Consensus 333 ~~~~~~~~~~~l~~~~~a~~~~~~~~~--~~~~~~ 365 (365)
T cd05279 333 PLDELITHVLPFEEINDGFDLMRSGES--IRTILT 365 (365)
T ss_pred chhHheeeeecHHHHHHHHHHHhCCCc--eeeeeC
Confidence 877678889999999999999987764 787763
No 57
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.39 E-value=9.6e-12 Score=83.52 Aligned_cols=107 Identities=21% Similarity=0.317 Sum_probs=85.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChh-hhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCCCcc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLV-NACAKEIDILSCFRY--VNDYPDALEMVASGKCPVRK 77 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~-~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~~~~ 77 (112)
+|+++||+|....+..++++++++|+++.+|.......+++. .+..++..+.+.... ...+.++.+++.++.+++.+
T Consensus 232 vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 311 (341)
T cd05281 232 VDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSALLKSGKVDLSP 311 (341)
T ss_pred CCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHHHHcCCCChhH
Confidence 589999998887889999999999999999865543333432 366788888776632 25688899999999987666
Q ss_pred ceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+++..++++++++|++.+.+++ . +|+++++
T Consensus 312 ~~~~~~~~~~~~~a~~~~~~~~-~-gk~vv~~ 341 (341)
T cd05281 312 VITHKLPLEDFEEAFELMRSGK-C-GKVVLYP 341 (341)
T ss_pred heEEEecHHHHHHHHHHHhcCC-C-ceEEecC
Confidence 6777899999999999998877 3 9998764
No 58
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.39 E-value=9e-12 Score=85.07 Aligned_cols=105 Identities=25% Similarity=0.364 Sum_probs=84.7
Q ss_pred CcEEEEcccCh-HHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC--CCHHHHHHHHHcCCCCCcc
Q psy12355 1 MMLYLDPLGTE-NCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV--NDYPDALEMVASGKCPVRK 77 (112)
Q Consensus 1 ~D~v~d~~g~~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g~~~~~~ 77 (112)
+|+++||+|.+ ..+..++++++++|+++.+|.......+++..+..+..++.+++... ..+.++++++.++.+++.+
T Consensus 276 vDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ll~~g~l~~~~ 355 (384)
T cd08265 276 ADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGHGIFPSVIKLMASGKIDMTK 355 (384)
T ss_pred CCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEeeccCCcchHHHHHHHHHcCCCChHH
Confidence 58999999873 56889999999999999999655444555566777788888887532 5799999999999988766
Q ss_pred ceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 78 LITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
++++.|+++++.+|++.+.++. .+|+++
T Consensus 356 ~~~~~~~~~~~~~a~~~~~~~~--~~kvvv 383 (384)
T cd08265 356 IITARFPLEGIMEAIKAASERT--DGKITI 383 (384)
T ss_pred heEEEeeHHHHHHHHHHHhcCC--CceEEe
Confidence 6778899999999999976654 388875
No 59
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.39 E-value=6.3e-12 Score=84.42 Aligned_cols=105 Identities=15% Similarity=0.191 Sum_probs=87.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++||+|. ..+..++++++++|+++.+|....+ ..+++..++.+++++.++.... ..+.++++++.++++++ +
T Consensus 244 ~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~ 320 (350)
T cd08274 244 VDVVADVVGG-PLFPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGTREVFRRLVRYIEEGEIRP--V 320 (350)
T ss_pred CcEEEecCCH-HHHHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecCCHHHHHHHHHHHHCCCccc--c
Confidence 5899999986 4689999999999999999865443 5677777788999999887654 78999999999998754 4
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+++.|+++++.+|++.+..+. ..+|+++.+
T Consensus 321 ~~~~~~~~~~~~a~~~~~~~~-~~~kvvi~~ 350 (350)
T cd08274 321 VAKTFPLSEIREAQAEFLEKR-HVGKLVLVP 350 (350)
T ss_pred cccccCHHHHHHHHHHHhcCC-CceEEEEeC
Confidence 678899999999999998876 458998864
No 60
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.39 E-value=3.5e-12 Score=85.14 Aligned_cols=103 Identities=18% Similarity=0.145 Sum_probs=79.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-----ccc--cChhhhhhcCeeEEeEeccC-------CCHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-----MVS--VPLVNACAKEIDILSCFRYV-------NDYPDALE 66 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~~--~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~ 66 (112)
+|+++||+|++ .+..++++++++|+++.+|.... ..+ .....++++++++.++.... ..++++++
T Consensus 208 vdvv~d~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 286 (325)
T TIGR02825 208 YDCYFDNVGGE-FSNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQGEVRQKALKELLK 286 (325)
T ss_pred eEEEEECCCHH-HHHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhhhhhHHHHHHHHH
Confidence 58999999875 47999999999999999996432 111 12345677888888876321 35788999
Q ss_pred HHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 67 MVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 67 ~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
++.+|++++. +...|+|+++.+|++.+.+++ ..+|+|+
T Consensus 287 l~~~g~l~~~--~~~~~~l~~~~~A~~~~~~~~-~~gkvVv 324 (325)
T TIGR02825 287 WVLEGKIQYK--EYVIEGFENMPAAFMGMLKGE-NLGKTIV 324 (325)
T ss_pred HHHCCCcccc--eeccccHHHHHHHHHHHhcCC-CCCeEEe
Confidence 9999998765 345689999999999999887 4589886
No 61
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.38 E-value=8e-12 Score=84.72 Aligned_cols=106 Identities=26% Similarity=0.521 Sum_probs=86.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC--CCHHHHHHHHHcCCCCCc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV--NDYPDALEMVASGKCPVR 76 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g~~~~~ 76 (112)
+|+++||+|+...+..++++++++|+++.+|.... +..++...++.+++++.+++... ..++++++++.++.+++.
T Consensus 257 ~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~ 336 (367)
T cd08263 257 VDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGARPRQDLPELVGLAASGKLDPE 336 (367)
T ss_pred CCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCCCcHHHHHHHHHHHHcCCCCcc
Confidence 58999999886568899999999999999986543 34566666667899988865432 578889999999998776
Q ss_pred cceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 77 KLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 77 ~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
+++++.++++++.+|++.+.++.. .+|+|+
T Consensus 337 ~~~~~~~~~~~~~~a~~~~~~~~~-~g~~~~ 366 (367)
T cd08263 337 ALVTHKYKLEEINEAYENLRKGLI-HGRAIV 366 (367)
T ss_pred cceeEEecHHHHHHHHHHHhcCCc-cceeee
Confidence 567788999999999999998874 488886
No 62
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=99.38 E-value=2.1e-12 Score=88.60 Aligned_cols=108 Identities=10% Similarity=0.179 Sum_probs=92.1
Q ss_pred CcEEEEcccChHHHHHH-HhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCC--CHH--HHHHHHHcCCC-C
Q psy12355 1 MMLYLDPLGTENCLTLG-INVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVN--DYP--DALEMVASGKC-P 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~-~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~--~~~--~~~~~~~~g~~-~ 74 (112)
+|++++|+|++.++... +++++++|+++.+|.+ +.+++...+..+++++.++..+.. .++ +.+.++++|++ +
T Consensus 258 aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlvn 335 (413)
T cd00401 258 GDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLVN 335 (413)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCCC
Confidence 59999999999988887 9999999999999965 467888889999999999988753 566 79999999998 8
Q ss_pred Cccceeee-----eCcc-cHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 75 VRKLITHN-----FKLE-EAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 75 ~~~~~~~~-----~~l~-~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
+.++++|. ++|+ |+.++++.+.+++....|+++.++
T Consensus 336 l~~~~gH~~~vmd~sf~~q~l~a~~l~~~~~~~~~kV~~~p~ 377 (413)
T cd00401 336 LGCATGHPSFVMSNSFTNQVLAQIELWTNRDKYEVGVYFLPK 377 (413)
T ss_pred CcccCCCccceechhHHHHHHHHHHHHhcCCcCCCcEEECCH
Confidence 88889998 9999 999999999887633367777653
No 63
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.38 E-value=9.7e-12 Score=83.71 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=86.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++|++|.+..+..++++++++|+++.+|.......++...+.+++.++.+.+... +++.+++++++++.+++. .
T Consensus 244 ~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ll~~~~i~~~--~ 321 (350)
T cd08240 244 VDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQGSYVGSLEELRELVALAKAGKLKPI--P 321 (350)
T ss_pred CcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcEEEEcccCCHHHHHHHHHHHHcCCCccc--e
Confidence 5899999987788999999999999999998765544445555667899998887655 788999999999987643 5
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
...|+++++.+|++.+.+++ ..+|+++++
T Consensus 322 ~~~~~~~~~~~a~~~~~~~~-~~gkvvv~~ 350 (350)
T cd08240 322 LTERPLSDVNDALDDLKAGK-VVGRAVLKP 350 (350)
T ss_pred eeEEcHHHHHHHHHHHHcCC-ccceEEecC
Confidence 56799999999999998887 459988753
No 64
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.38 E-value=8.5e-12 Score=83.78 Aligned_cols=107 Identities=22% Similarity=0.342 Sum_probs=88.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-c--cccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-M--VSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVR 76 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~--~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~ 76 (112)
+|+++||+|+...+..++++++++|+++.+|.... . ..+++..++.+++++.+..... +.+++++++++++.+.+.
T Consensus 234 ~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~ 313 (345)
T cd08260 234 AHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMPAHRYDAMLALIASGKLDPE 313 (345)
T ss_pred CCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCCHHHHHHHHHHHHcCCCChh
Confidence 58999999877778999999999999999997653 2 4556666778899988876544 789999999999988766
Q ss_pred cceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 77 KLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 77 ~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+++++.++++++++|++.+.++. ..+|+|++
T Consensus 314 ~~~~~~~~~~~~~~a~~~~~~~~-~~~~~v~~ 344 (345)
T cd08260 314 PLVGRTISLDEAPDALAAMDDYA-TAGITVIT 344 (345)
T ss_pred hheeEEecHHHHHHHHHHHHcCC-CCceEEec
Confidence 55678899999999999999887 45888764
No 65
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.38 E-value=6.4e-12 Score=85.93 Aligned_cols=104 Identities=12% Similarity=0.135 Sum_probs=85.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++||+|. ..+..++++++++|+++.+|.... ...++...++.++.++.+++... +.+.++++++.++.+++ .
T Consensus 286 ~d~vid~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~~~~~~~~~l~~--~ 362 (393)
T cd08246 286 PDIVFEHPGR-ATFPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFANDREAAEANRLVMKGRIDP--C 362 (393)
T ss_pred CeEEEECCch-HhHHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcHHHHHHHHHHHHcCCcee--e
Confidence 5899999986 568999999999999999986543 34566667788899999887655 68899999999998764 4
Q ss_pred eeeeeCcccHHHHHHHHhcC-CCCceEEEEe
Q psy12355 79 ITHNFKLEEAVEAFKTASKK-ADDTIKIMIH 108 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~-~~~~~k~v~~ 108 (112)
++++|+++++++|++.+.++ + ..+|+++-
T Consensus 363 ~~~~~~l~~~~~a~~~~~~~~~-~~gkvvv~ 392 (393)
T cd08246 363 LSKVFSLDETPDAHQLMHRNQH-HVGNMAVL 392 (393)
T ss_pred eeEEEeHHHHHHHHHHHHhCcc-ccceEEEe
Confidence 77889999999999999887 5 44888763
No 66
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.38 E-value=9.4e-12 Score=84.44 Aligned_cols=105 Identities=22% Similarity=0.306 Sum_probs=85.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC--CccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~ 74 (112)
+|+++||+|.+..+..++++++++|+++.+|... ....+++..+..+++++.++... .+.++++++++.+++++
T Consensus 255 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~ 334 (365)
T cd08278 255 VDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIPRLIELYRQGKFP 334 (365)
T ss_pred CcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCcChHHHHHHHHHHHHcCCCC
Confidence 5899999998778899999999999999999753 34567777777889998887642 14678899999999886
Q ss_pred CccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+.++++ .|+++++++|++.+.+++. .|++++
T Consensus 335 ~~~~~~-~~~l~~~~~a~~~~~~~~~--~k~~~~ 365 (365)
T cd08278 335 FDKLVT-FYPFEDINQAIADSESGKV--IKPVLR 365 (365)
T ss_pred hHHheE-EecHHHHHHHHHHHHCCCc--eEEEEC
Confidence 544454 7999999999999998774 788873
No 67
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.37 E-value=1.4e-11 Score=82.50 Aligned_cols=104 Identities=22% Similarity=0.349 Sum_probs=84.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc-CCCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++||+|....+..++++++++|+++.+|.... .+++...++.+++++.++... ...+.++++++.++.+++ .
T Consensus 236 ~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~l~~---~ 311 (340)
T cd05284 236 ADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIGSLWGTRAELVEVVALAESGKVKV---E 311 (340)
T ss_pred CCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-CccCHHHhhhcceEEEEEecccHHHHHHHHHHHHhCCCCc---c
Confidence 58999999987778999999999999999996553 444555556789998887653 477899999999998764 3
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
.+.|+++++++|++.+.+++ ..+|+++.+
T Consensus 312 ~~~~~~~~~~~a~~~~~~~~-~~gkvv~~~ 340 (340)
T cd05284 312 ITKFPLEDANEALDRLREGR-VTGRAVLVP 340 (340)
T ss_pred eEEEeHHHHHHHHHHHHcCC-ccceEEecC
Confidence 46799999999999999887 458988753
No 68
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.37 E-value=1.9e-11 Score=81.85 Aligned_cols=109 Identities=28% Similarity=0.493 Sum_probs=87.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++||+|....+..++++++++|+++.+|....+..++...+..+++++.+..... +.++++.+++.+|.+++.+.+
T Consensus 228 vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~ 307 (337)
T cd08261 228 ADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNATREDFPDVIDLLESGKVDPEALI 307 (337)
T ss_pred CCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEEeccCChhhHHHHHHHHHcCCCChhhhe
Confidence 5899999988777899999999999999998665544555556677888887765333 678999999999988764346
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
...++++++.+|++.+.+++...+|+|+++
T Consensus 308 ~~~~~~~~~~~a~~~~~~~~~~~~k~v~~~ 337 (337)
T cd08261 308 THRFPFEDVPEAFDLWEAPPGGVIKVLIEF 337 (337)
T ss_pred EEEeeHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 678999999999999988742459999864
No 69
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.34 E-value=2.8e-11 Score=80.80 Aligned_cols=105 Identities=25% Similarity=0.475 Sum_probs=85.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++||+|....+..++++++++|+++.+|.... ...++...+..+++++.+.......++++++++.++++++.+.
T Consensus 227 vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 306 (334)
T cd08234 227 FDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFINPYTFPRAIALLESGKIDVKGL 306 (334)
T ss_pred CcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccCHHHHHHHHHHHHcCCCChhhh
Confidence 58999999877888999999999999999986543 3445555566688888887755577899999999998876655
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
++.+++++++++|++.+.+ . ..+|+++
T Consensus 307 ~~~~~~~~~~~~a~~~~~~-~-~~~k~vi 333 (334)
T cd08234 307 VSHRLPLEEVPEALEGMRS-G-GALKVVV 333 (334)
T ss_pred EEEEecHHHHHHHHHHHhc-C-CceEEEe
Confidence 6778999999999999988 5 4589886
No 70
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.33 E-value=3.7e-11 Score=80.53 Aligned_cols=106 Identities=31% Similarity=0.512 Sum_probs=86.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCcc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRK 77 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~ 77 (112)
+|+++||+|....+..++++++++|+++.+|.... ...+++..+..+++.+.+.+... ..++++++++.++.+++.+
T Consensus 235 vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~ 314 (343)
T cd08235 235 ADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAASPEDYKEALELIASGKIDVKD 314 (343)
T ss_pred CCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCChhhHHHHHHHHHcCCCChHH
Confidence 58999999877778999999999999999986443 34556666778888888877544 7789999999999887544
Q ss_pred ceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 78 LITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
.+...|+++++.+|++.+.+++ . +|+|++
T Consensus 315 ~~~~~~~~~~~~~a~~~~~~~~-~-~k~vi~ 343 (343)
T cd08235 315 LITHRFPLEDIEEAFELAADGK-S-LKIVIT 343 (343)
T ss_pred heeeEeeHHHHHHHHHHHhCCC-c-EEEEeC
Confidence 5667899999999999998877 3 899873
No 71
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.33 E-value=3e-11 Score=82.23 Aligned_cols=107 Identities=23% Similarity=0.258 Sum_probs=84.8
Q ss_pred CcEEEEcccChH-----------HHHHHHhhccCCcEEEEEecCCC-------------ccccChhhhhhcCeeEEeEec
Q psy12355 1 MMLYLDPLGTEN-----------CLTLGINVTKMGGKLMLVGMGPQ-------------MVSVPLVNACAKEIDILSCFR 56 (112)
Q Consensus 1 ~D~v~d~~g~~~-----------~~~~~~~~l~~~G~iv~~g~~~~-------------~~~~~~~~~~~~~~~l~g~~~ 56 (112)
+|+++||+|... ++..++++++++|+++.+|.... ...++...++.++..+.+...
T Consensus 244 ~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (375)
T cd08282 244 VDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGLLWAKGLSFGTGQA 323 (375)
T ss_pred CCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHHHHhcCcEEEEecC
Confidence 589999998753 58899999999999998886431 123455566777887777665
Q ss_pred cC-CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 57 YV-NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 57 ~~-~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
.. ..++++++++.++++++.++++++|+++++++|++.+.+++ .+|+|+.+
T Consensus 324 ~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~~~a~~~~~~~~--~~kvvv~~ 375 (375)
T cd08282 324 PVKKYNRQLRDLILAGRAKPSFVVSHVISLEDAPEAYARFDKRL--ETKVVIKP 375 (375)
T ss_pred CchhhHHHHHHHHHcCCCChHHcEEEEeeHHHHHHHHHHHhcCC--ceEEEeCC
Confidence 33 67889999999999987656889999999999999999877 38998753
No 72
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.33 E-value=2.1e-11 Score=81.19 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=80.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-c---c---ccChhhhhhcCeeEEeEeccC------CCHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-M---V---SVPLVNACAKEIDILSCFRYV------NDYPDALEM 67 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~---~---~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~ 67 (112)
+|+++|++|. ..+..++++++++|+++.+|.... . . ......++.+++++.+++... ..+++++++
T Consensus 212 vd~vld~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 290 (329)
T cd08294 212 IDCYFDNVGG-EFSSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQDRWPEALKQLLKW 290 (329)
T ss_pred cEEEEECCCH-HHHHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhHHHHHHHHHHHHHH
Confidence 5899999987 568999999999999999985321 1 1 122345778889998876432 236788999
Q ss_pred HHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 68 VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 68 ~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+.+|++++.+ ...|+++++++|++.+.+++ ..+|+|+.+
T Consensus 291 ~~~g~i~~~~--~~~~~l~~~~~A~~~~~~~~-~~gkvvv~~ 329 (329)
T cd08294 291 IKEGKLKYRE--HVTEGFENMPQAFIGMLKGE-NTGKAIVKV 329 (329)
T ss_pred HHCCCCcCCc--ccccCHHHHHHHHHHHHcCC-CCCeEEEeC
Confidence 9999887653 34689999999999999888 459998863
No 73
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.32 E-value=2.5e-11 Score=83.27 Aligned_cols=105 Identities=13% Similarity=0.141 Sum_probs=86.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|++|||+|. ..+..++++++++|+++.+|.... +..++...++.++.++.++.... .+++++++++.++.+++ .
T Consensus 281 ~d~vld~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~ 357 (398)
T TIGR01751 281 PDIVFEHPGR-ATFPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANLREAWEANRLVAKGRIDP--T 357 (398)
T ss_pred ceEEEECCcH-HHHHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccCcHHHHHHHHHHHHCCCccc--c
Confidence 5899999985 568999999999999999997654 35566666777888888876544 56789999999998764 4
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+++++++++++++++.+.++. ..+|+|+.+
T Consensus 358 ~~~~~~l~~~~~a~~~~~~~~-~~gkvvv~~ 387 (398)
T TIGR01751 358 LSKVYPLEEIGQAHQDVHRNH-HQGNVAVLV 387 (398)
T ss_pred eeeEEcHHHHHHHHHHHHcCC-CCceEEEEe
Confidence 778999999999999998887 458998876
No 74
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.31 E-value=5.3e-11 Score=79.53 Aligned_cols=105 Identities=26% Similarity=0.354 Sum_probs=83.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc--ccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCcc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV--SVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRK 77 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~--~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~ 77 (112)
+|+++||+|+. .+..++++++++|+++.+|...... +++...++.++.++.+..... .+++++++++.++.+++
T Consensus 226 ~d~~ld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-- 302 (334)
T PRK13771 226 ADIVIETVGTP-TLEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKIKP-- 302 (334)
T ss_pred CcEEEEcCChH-HHHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCCCHHHHHHHHHHHHcCCCcc--
Confidence 58999999874 5889999999999999999754321 244444567888888876433 77899999999998753
Q ss_pred ceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 78 LITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 78 ~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++++.|+++++.+|++.+.++. ..+|+++.+
T Consensus 303 ~~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~~ 333 (334)
T PRK13771 303 VIGAEVSLSEIDKALEELKDKS-RIGKILVKP 333 (334)
T ss_pred eEeeeEcHHHHHHHHHHHHcCC-CcceEEEec
Confidence 4778899999999999998876 458988864
No 75
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.30 E-value=6e-11 Score=79.61 Aligned_cols=107 Identities=26% Similarity=0.446 Sum_probs=83.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc---cChhhhhhcCeeEEeEecc------CCCHHHHHHHHHcC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS---VPLVNACAKEIDILSCFRY------VNDYPDALEMVASG 71 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~---~~~~~~~~~~~~l~g~~~~------~~~~~~~~~~~~~g 71 (112)
+|+++||+|....+..++++++++|+++.+|....+.. .+...++.++.++.+++.. .+.++++.+++.++
T Consensus 228 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T cd08236 228 ADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASG 307 (343)
T ss_pred CCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchhhHHHHHHHHHcC
Confidence 58999999877778999999999999999996554322 2334566888888887643 25688899999999
Q ss_pred CCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 72 KCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
.+++.+.+...+++++++++++.+.++....+|+|+
T Consensus 308 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~v~ 343 (343)
T cd08236 308 KIKVEPLITHRLPLEDGPAAFERLADREEFSGKVLL 343 (343)
T ss_pred CCChHHheeeeecHHHHHHHHHHHHcCCCCeeEEeC
Confidence 886444566789999999999999984435588874
No 76
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.30 E-value=4.5e-11 Score=78.83 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=83.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhh--cCeeEEeEecc-----CCCHHHHHHHHHcCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACA--KEIDILSCFRY-----VNDYPDALEMVASGK 72 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~--~~~~l~g~~~~-----~~~~~~~~~~~~~g~ 72 (112)
+|+++||+|+. .+..++++++++|+++.+|.... ...+++..+.. ++.++.++... ...+.++.+++.+++
T Consensus 193 ~d~vl~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (305)
T cd08270 193 VDLVVDSVGGP-QLARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVAAGR 271 (305)
T ss_pred ceEEEECCCcH-HHHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHHCCC
Confidence 58999999875 58999999999999999996543 34455555554 68888887754 256788999999998
Q ss_pred CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+++. +.++++++++++|++.+.++. ..+|+++.+
T Consensus 272 i~~~--~~~~~~~~~~~~a~~~~~~~~-~~gkvvi~~ 305 (305)
T cd08270 272 LDPR--IGWRGSWTEIDEAAEALLARR-FRGKAVLDV 305 (305)
T ss_pred ccce--eccEEcHHHHHHHHHHHHcCC-CCceEEEeC
Confidence 8753 667899999999999998877 458998864
No 77
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.30 E-value=4.3e-11 Score=79.51 Aligned_cols=103 Identities=15% Similarity=0.194 Sum_probs=82.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~ 68 (112)
+|+++||+|.+ ....++++++++|+++.+|.... ...+++.....++.++.++.... ..+.++++++
T Consensus 209 ~d~v~d~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 287 (324)
T cd08292 209 ISVALDSVGGK-LAGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSVEYRKRMIAELLTLA 287 (324)
T ss_pred CcEEEECCCCh-hHHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCHHHHHHHHHHHHHHH
Confidence 58999999875 57889999999999999997543 45566666778999998876421 3578899999
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
.+|.+++. +.+.|+++++.+|++.+.++. ..+|+++
T Consensus 288 ~~g~i~~~--~~~~~~~~~~~~a~~~~~~~~-~~~kvvv 323 (324)
T cd08292 288 LKGQLLLP--VEAVFDLGDAAKAAAASMRPG-RAGKVLL 323 (324)
T ss_pred HCCCccCc--cccEecHHHHHHHHHHHHcCC-CCceEEe
Confidence 99988753 467899999999999998776 4588876
No 78
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.29 E-value=8.7e-11 Score=78.83 Aligned_cols=109 Identities=24% Similarity=0.390 Sum_probs=82.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcccc-ChhhhhhcCeeEEeEecc-CCCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSV-PLVNACAKEIDILSCFRY-VNDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~-~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++||+|....+..++++++++|+++.+|........ .....+.+++++.++... ...+.++++++.++.+++.++
T Consensus 237 ~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 316 (347)
T cd05278 237 VDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPVRARMPELLDLIEEGKIDPSKL 316 (347)
T ss_pred CcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccCchhHHHHHHHHHHcCCCChhHc
Confidence 589999998766789999999999999999865432211 112334677777775533 367889999999998876555
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+...++++++++|++.+..++...+|+|+++
T Consensus 317 ~~~~~~~~~~~~a~~~~~~~~~~~~~~vv~~ 347 (347)
T cd05278 317 ITHRFPLDDILKAYRLFDNKPDGCIKVVIRP 347 (347)
T ss_pred EEEEecHHHHHHHHHHHhcCCCCceEEEecC
Confidence 6678999999999999987763258988764
No 79
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.28 E-value=8.4e-11 Score=78.84 Aligned_cols=105 Identities=19% Similarity=0.291 Sum_probs=86.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++||.+....+..++++++++|+++.+|.... ..+++...++.+++++.+..... ..++++++++.++.+++ .
T Consensus 235 vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 312 (341)
T cd08297 235 AHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEALEFAARGKVKP--H 312 (341)
T ss_pred CCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEeccCCHHHHHHHHHHHHcCCCcc--e
Confidence 58999988878889999999999999999997654 33566667778999998866443 78899999999998764 3
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+ +.|++++++++++.+..+. ..+|+++++
T Consensus 313 ~-~~~~~~~~~~a~~~~~~~~-~~gkvvi~~ 341 (341)
T cd08297 313 I-QVVPLEDLNEVFEKMEEGK-IAGRVVVDF 341 (341)
T ss_pred e-EEEcHHHHHHHHHHHHcCC-ccceEEEeC
Confidence 4 5799999999999999887 458998864
No 80
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.28 E-value=1.2e-10 Score=79.03 Aligned_cols=105 Identities=24% Similarity=0.437 Sum_probs=84.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC--CccccChhhhhhcCeeEEeEecc----CCCHHHHHHHHHcCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRY----VNDYPDALEMVASGKCP 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~----~~~~~~~~~~~~~g~~~ 74 (112)
+|+++|++|....+..++++++++|+++.+|... ....++...+..++..+.+++.. ...++++++++.++.++
T Consensus 252 vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~ 331 (363)
T cd08279 252 ADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLK 331 (363)
T ss_pred CCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHHHHHHHHHHHHcCCCC
Confidence 5899999987777899999999999999998654 24566766777778777776432 26788999999999987
Q ss_pred CccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 75 VRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 75 ~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
+.++++++|+++++.+|++.+.+++. .|.|+
T Consensus 332 ~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~ 362 (363)
T cd08279 332 LDELVTRRYSLDEINEAFADMLAGEN--ARGVI 362 (363)
T ss_pred cceeEEEEEcHHHHHHHHHHHhcCCc--eeEEe
Confidence 76667788999999999999998874 45544
No 81
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.27 E-value=1.2e-10 Score=79.42 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=82.0
Q ss_pred CcEEEEcccChHHHHHHHhhc-cCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEeccC----CCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVT-KMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYV----NDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l-~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~~~----~~~~~~~~~~~~g~~ 73 (112)
+|+++||+|.+..+..++..+ +++|+++.+|.... +.+++.. .+.++.++.+++... ..+.++++.+.++.+
T Consensus 261 ~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (373)
T cd08299 261 VDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPM-LLLTGRTWKGAVFGGWKSKDSVPKLVADYMAKKF 339 (373)
T ss_pred CeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHH-HHhcCCeEEEEEecCCccHHHHHHHHHHHHcCCC
Confidence 589999999877788888866 57999999997643 3344443 334677888876532 467788888888888
Q ss_pred CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+++++++++|+++++.+|++.+..++. .|+++.+
T Consensus 340 ~~~~~~~~~~~l~e~~~a~~~~~~~~~--~k~~~~~ 373 (373)
T cd08299 340 NLDPLITHTLPFEKINEGFDLLRSGKS--IRTVLTF 373 (373)
T ss_pred CchhheeeeecHHHHHHHHHHHhCCCc--ceEEEeC
Confidence 887788899999999999999987764 7888763
No 82
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.25 E-value=1.9e-10 Score=76.97 Aligned_cols=106 Identities=14% Similarity=0.257 Sum_probs=84.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccce
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~~ 79 (112)
+|+++++++.+..+..++++++++|+++.+|.......++...+..++.++.+++.+. +.++++++++.+|.+++ .+
T Consensus 231 ~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l~~--~v 308 (338)
T PRK09422 231 AHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQFGAEGKVVP--KV 308 (338)
T ss_pred CcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcEEEEecCCCHHHHHHHHHHHHhCCCCc--cE
Confidence 3655555667788999999999999999999765555566667777888888876433 67889999999998754 35
Q ss_pred eeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 80 THNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 80 ~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
+ .++++++++|++.+.++. ..+|+++.+.
T Consensus 309 ~-~~~~~~~~~a~~~~~~~~-~~gkvvv~~~ 337 (338)
T PRK09422 309 Q-LRPLEDINDIFDEMEQGK-IQGRMVIDFT 337 (338)
T ss_pred E-EEcHHHHHHHHHHHHcCC-ccceEEEecC
Confidence 4 589999999999999887 4589998753
No 83
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.23 E-value=2.3e-10 Score=75.93 Aligned_cols=105 Identities=17% Similarity=0.240 Sum_probs=82.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASGK 72 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g~ 72 (112)
+|+++||+|... ...++++++++|+++.+|.... +..++...++.+++++.+..... ..+.++++++.++.
T Consensus 212 ~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 290 (324)
T cd08244 212 VTVVLDGVGGAI-GRAALALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLRALEARALAEAAAGR 290 (324)
T ss_pred ceEEEECCChHh-HHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHHHHHHHHHHHHHCCC
Confidence 589999998765 6889999999999999997553 33555556678888888776422 45777889999998
Q ss_pred CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++. ++++.|+++++.+|++.+.++. ..+|+++.+
T Consensus 291 l~~--~~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~~ 324 (324)
T cd08244 291 LVP--VVGQTFPLERAAEAHAALEARS-TVGKVLLLP 324 (324)
T ss_pred ccC--ccceEEeHHHHHHHHHHHHcCC-CCceEEEeC
Confidence 753 4677899999999999998877 458998764
No 84
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.19 E-value=5e-10 Score=73.11 Aligned_cols=105 Identities=22% Similarity=0.346 Sum_probs=78.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc-------------CCCHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-------------VNDYPDALEM 67 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~-------------~~~~~~~~~~ 67 (112)
+|+++||+|....+..++++++++|+++.+|............+..+.+++.+.... .+.+++++++
T Consensus 160 ~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (277)
T cd08255 160 ADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEEALDL 239 (277)
T ss_pred CCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCCccccHHHHHhccCeEEeecccccccccccccccccccHHHHHHH
Confidence 589999998877889999999999999999975543111122345556566655421 1468899999
Q ss_pred HHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 68 VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 68 ~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
+.++.+++ ++.+.|+++++++|++.+.++.....|+++
T Consensus 240 ~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~~~~~k~~~ 277 (277)
T cd08255 240 LAEGRLEA--LITHRVPFEDAPEAYRLLFEDPPECLKVVL 277 (277)
T ss_pred HHcCCccc--cccCccCHHHHHHHHHHHHcCCccceeeeC
Confidence 99998654 466789999999999999888545588764
No 85
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.18 E-value=7.6e-10 Score=73.62 Aligned_cols=103 Identities=14% Similarity=0.156 Sum_probs=78.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc--C-----CCHHHHHHHHHcCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY--V-----NDYPDALEMVASGK 72 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~--~-----~~~~~~~~~~~~g~ 72 (112)
+|+++||+|+. .+..++++++++|+++.+|.... +..++...++.+++++.+.... . ..+.++.+++.++.
T Consensus 212 ~d~vld~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (323)
T TIGR02823 212 WAGAVDTVGGH-TLANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRLATDLKPRN 290 (323)
T ss_pred ceEEEECccHH-HHHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHHHHHhhcCC
Confidence 58999999865 58999999999999999997643 3444445666889998886532 1 12556666777776
Q ss_pred CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
++. + .+.|+++++++|++.+.+++ ..+|++++
T Consensus 291 ~~~--~-~~~~~l~~~~~a~~~~~~~~-~~~k~vv~ 322 (323)
T TIGR02823 291 LES--I-TREITLEELPEALEQILAGQ-HRGRTVVD 322 (323)
T ss_pred CcC--c-eeeecHHHHHHHHHHHhCCC-ccceEEEe
Confidence 643 3 45899999999999999887 45898875
No 86
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.16 E-value=7.1e-10 Score=73.81 Aligned_cols=106 Identities=16% Similarity=0.197 Sum_probs=76.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc---CCCHHHHHHHHHcCCCC--
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY---VNDYPDALEMVASGKCP-- 74 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~---~~~~~~~~~~~~~g~~~-- 74 (112)
+|+++||+|. ..+..++++++++|+++.+|.... ..++++..++.+++++.+.... .....+++..+.+ .+.
T Consensus 214 ~d~vld~~g~-~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 291 (326)
T cd08289 214 WAGAVDPVGG-KTLAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWRRLAT-DLKPT 291 (326)
T ss_pred cCEEEECCcH-HHHHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHHHHHh-hcCcc
Confidence 5899999987 568999999999999999997643 3444466677899999997532 1223444443332 222
Q ss_pred -CccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 75 -VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 75 -~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
....++++|+++++.+|++.+.+++ ..+|+++++
T Consensus 292 ~~~~~~~~~~~l~~~~~a~~~~~~~~-~~gkvvv~~ 326 (326)
T cd08289 292 QLLNEIKQEITLDELPEALKQILQGR-VTGRTVVKL 326 (326)
T ss_pred ccccccceEeeHHHHHHHHHHHhcCc-ccceEEEeC
Confidence 1224578899999999999999887 458998763
No 87
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.16 E-value=1.1e-09 Score=73.56 Aligned_cols=105 Identities=23% Similarity=0.237 Sum_probs=72.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC---ccc----cCh--hhh-hhcCeeEEeEec--cC----CCHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ---MVS----VPL--VNA-CAKEIDILSCFR--YV----NDYPDA 64 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~---~~~----~~~--~~~-~~~~~~l~g~~~--~~----~~~~~~ 64 (112)
+|+++||+|+.. +..++++++++|+++.+|.... +.. ++. ..+ ..++++..+... .. +.++++
T Consensus 225 vd~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (345)
T cd08293 225 VDVYFDNVGGEI-SDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVLNYKDKFEEAIAQL 303 (345)
T ss_pred ceEEEECCCcHH-HHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEeeccHhHHHHHHHHH
Confidence 589999998764 7899999999999999985321 111 111 111 123444333321 11 346678
Q ss_pred HHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 65 LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 65 ~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++++.+|++++. ....++++++.+|++.+.+++ ..+|+|+.+
T Consensus 304 ~~l~~~g~i~~~--~~~~~~l~~~~~A~~~~~~~~-~~gkvvl~~ 345 (345)
T cd08293 304 SQWVKEGKLKVK--ETVYEGLENAGEAFQSMMNGG-NIGKQIVKV 345 (345)
T ss_pred HHHHHCCCccce--eEEeecHHHHHHHHHHHhcCC-CCCeEEEEC
Confidence 889999988765 334569999999999999887 459999864
No 88
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.15 E-value=6.8e-10 Score=73.75 Aligned_cols=103 Identities=14% Similarity=0.148 Sum_probs=76.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC---CC----HHHHHHHHHcCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV---ND----YPDALEMVASGK 72 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~---~~----~~~~~~~~~~g~ 72 (112)
+|+++||+|. ..+..++++++++|+++.+|.... +..+++..++.+++++.+..... .. ++.+.+++.++.
T Consensus 214 ~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (325)
T cd05280 214 WAGAIDTVGG-DVLANLLKQTKYGGVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWKPDL 292 (325)
T ss_pred ccEEEECCch-HHHHHHHHhhcCCCEEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHhcCC
Confidence 5899999987 568999999999999999997553 34555556667899988876422 22 233444445552
Q ss_pred CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
. +.+.++|+++++++|++.+.+++ ..+|++++
T Consensus 293 ~---~~~~~~~~~~~~~~a~~~~~~~~-~~gk~vv~ 324 (325)
T cd05280 293 L---EIVVREISLEELPEAIDRLLAGK-HRGRTVVK 324 (325)
T ss_pred c---cceeeEecHHHHHHHHHHHhcCC-cceEEEEe
Confidence 2 23667899999999999999888 45898875
No 89
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.14 E-value=1.2e-09 Score=72.79 Aligned_cols=104 Identities=18% Similarity=0.207 Sum_probs=83.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++|++|. ..+..++++++++|+++.+|.... ....+...++.+++++.++.... ..+.++++++.++.+++ +
T Consensus 230 ~d~~i~~~~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~--~ 306 (336)
T cd08276 230 VDHVVEVGGP-GTLAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAMNRAIEAHRIRP--V 306 (336)
T ss_pred CcEEEECCCh-HHHHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEecCcHHHHHHHHHHHHcCCccc--c
Confidence 5899999974 568899999999999999997554 33455667788999999987543 68889999999887754 3
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
.++.+++++++++++.+.++. ..+|+++.
T Consensus 307 ~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~ 335 (336)
T cd08276 307 IDRVFPFEEAKEAYRYLESGS-HFGKVVIR 335 (336)
T ss_pred cCcEEeHHHHHHHHHHHHhCC-CCceEEEe
Confidence 567899999999999998876 45888875
No 90
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.13 E-value=9.2e-10 Score=73.49 Aligned_cols=103 Identities=20% Similarity=0.289 Sum_probs=82.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++||++....+..++++++++|+++.+|.... ...++...++.++.++.++..+. ..++++++++.++.+++
T Consensus 226 ~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~--- 302 (330)
T cd08245 226 ADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKVKP--- 302 (330)
T ss_pred CCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEeccCCHHHHHHHHHHHHcCCCcc---
Confidence 58999998877888999999999999999986543 22333455778888888887654 77888999999998864
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
..+.++++++.+|++.+.++. ..+|+|+
T Consensus 303 ~~~~~~~~~~~~a~~~~~~~~-~~~~~v~ 330 (330)
T cd08245 303 MIETFPLDQANEAYERMEKGD-VRFRFVL 330 (330)
T ss_pred eEEEEcHHHHHHHHHHHHcCC-CCcceeC
Confidence 346799999999999998877 4477764
No 91
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.13 E-value=1.3e-09 Score=72.57 Aligned_cols=105 Identities=22% Similarity=0.308 Sum_probs=83.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|++++++|. ..+..++++++++|+++.+|.... ...++....+.+++++.+..... ..+.++++++.++.+++ +
T Consensus 236 ~d~~i~~~g~-~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~ 312 (342)
T cd08266 236 VDVVVEHVGA-ATWEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAELDEALRLVFRGKLKP--V 312 (342)
T ss_pred CcEEEECCcH-HHHHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCCHHHHHHHHHHHHcCCccc--c
Confidence 5899999976 458889999999999999986543 33455545677888888877544 67888999999998754 4
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+++.|+++++++|++.+.++. ..+|+++.+
T Consensus 313 ~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~~ 342 (342)
T cd08266 313 IDSVFPLEEAAEAHRRLESRE-QFGKIVLTP 342 (342)
T ss_pred eeeeEcHHHHHHHHHHHHhCC-CCceEEEeC
Confidence 778899999999999998876 458998753
No 92
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.13 E-value=4.6e-10 Score=73.67 Aligned_cols=106 Identities=18% Similarity=0.162 Sum_probs=84.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC---CCc-cc---cChhhhhhcCeeEEeEeccC-------CCHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG---PQM-VS---VPLVNACAKEIDILSCFRYV-------NDYPDALE 66 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~---~~~-~~---~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~ 66 (112)
.|+.||++|+ ..+.+.+..|+..+|+..+|.- +.+ .+ -.+..++.+.+++.|+.... +-.+++..
T Consensus 220 IDvyfeNVGg-~v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~~~~~~~~e~~~~l~~ 298 (340)
T COG2130 220 IDVYFENVGG-EVLDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVASDYDQRFPEALRELGG 298 (340)
T ss_pred eEEEEEcCCc-hHHHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEechhhhhhhHHHHHHHHH
Confidence 4899999987 5699999999999999999942 222 11 12356888999999987521 45678999
Q ss_pred HHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 67 MVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 67 ~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
|+.+|+++.+. +-+=-|+.+++||.-+.+|+ +.||.|+.+.
T Consensus 299 wv~~GKi~~~e--ti~dGlEnaP~Af~gLl~G~-N~GK~vvKv~ 339 (340)
T COG2130 299 WVKEGKIQYRE--TIVDGLENAPEAFIGLLSGK-NFGKLVVKVA 339 (340)
T ss_pred HHHcCceeeEe--eehhhhhccHHHHHHHhcCC-ccceEEEEec
Confidence 99999998864 33346999999999999999 8899999864
No 93
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.12 E-value=1.1e-09 Score=73.10 Aligned_cols=102 Identities=17% Similarity=0.099 Sum_probs=79.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++++++....+..++++++++|+++.+|..... ..+++.. +.++..+.++.... ..+.++++++.++.+++
T Consensus 226 vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l~~--- 301 (329)
T cd08298 226 LDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANLTRQDGEEFLKLAAEIPIKP--- 301 (329)
T ss_pred ccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEecCCCHHHHHHHHHHHHcCCCCc---
Confidence 588999887778899999999999999998854322 2233333 45777788877544 67889999999998765
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
.++.|+++++.+|++.+.+++ ..+|+++
T Consensus 302 ~~~~~~~~~~~~a~~~~~~~~-~~~~~v~ 329 (329)
T cd08298 302 EVETYPLEEANEALQDLKEGR-IRGAAVL 329 (329)
T ss_pred eEEEEeHHHHHHHHHHHHcCC-CcceeeC
Confidence 357899999999999999877 4588763
No 94
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.12 E-value=1.5e-09 Score=72.23 Aligned_cols=104 Identities=21% Similarity=0.295 Sum_probs=80.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|++++|+|... ...++++++++|+++.+|.... ...++......++.++.++.... ..+.++++++.++.+++ +
T Consensus 227 ~d~v~~~~g~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--~ 303 (332)
T cd08259 227 ADVVIELVGSPT-IEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKIKP--V 303 (332)
T ss_pred CCEEEECCChHH-HHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCCcc--c
Confidence 589999998755 7889999999999999986543 22234444446787777776443 67889999999998754 4
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
++++|+++++++|++.+.++. ..+|++++
T Consensus 304 ~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~ 332 (332)
T cd08259 304 IDRVVSLEDINEALEDLKSGK-VVGRIVLK 332 (332)
T ss_pred eeEEEcHHHHHHHHHHHHcCC-cccEEEeC
Confidence 778899999999999999877 45888763
No 95
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.12 E-value=5e-10 Score=74.65 Aligned_cols=107 Identities=15% Similarity=0.170 Sum_probs=75.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCe------eEEeEeccC----CCHHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEI------DILSCFRYV----NDYPDALEMVA 69 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~------~l~g~~~~~----~~~~~~~~~~~ 69 (112)
+|+++||+|. .....++++++++|+++.+|..... ..++...+..++. .+.+.+... ..+.++++++.
T Consensus 210 ~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 288 (327)
T PRK10754 210 VRVVYDSVGK-DTWEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTREELTEASNELFSLIA 288 (327)
T ss_pred eEEEEECCcH-HHHHHHHHHhccCCEEEEEccCCCCCCCcCHHHHhccCceEEecceeecccCCHHHHHHHHHHHHHHHH
Confidence 4899999986 5578899999999999999965432 2233333332221 122222211 23456889999
Q ss_pred cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+|++++..++++.|+++++.++++.+..+. ..+|+|+.+
T Consensus 289 ~g~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~ 327 (327)
T PRK10754 289 SGVIKVDVAEQQKFPLKDAQRAHEILESRA-TQGSSLLIP 327 (327)
T ss_pred CCCeeeecccCcEEcHHHHHHHHHHHHcCC-CcceEEEeC
Confidence 999876555678899999999999998887 459999863
No 96
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.11 E-value=1.8e-09 Score=71.69 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=80.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~ 68 (112)
+|+++||+|+.. ...++++++++|+++.+|.... +..++...+..++.++.+..... +.+.++++++
T Consensus 208 ~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 286 (323)
T cd05282 208 ARLALDAVGGES-ATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATKEAKQETFAEVIKLV 286 (323)
T ss_pred ceEEEECCCCHH-HHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCHHHHHHHHHHHHHHH
Confidence 589999998865 5788999999999999986554 34455555555888888865321 3477889999
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
.++.+++ .+++.|+++++.+|++.+..+. ..+|++++
T Consensus 287 ~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~-~~~kvv~~ 323 (323)
T cd05282 287 EAGVLTT--PVGAKFPLEDFEEAVAAAEQPG-RGGKVLLT 323 (323)
T ss_pred hCCCccc--CccceecHHHHHHHHHHHhcCC-CCceEeeC
Confidence 9998764 3677899999999999998876 45888763
No 97
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.11 E-value=1.6e-09 Score=72.58 Aligned_cols=104 Identities=21% Similarity=0.183 Sum_probs=81.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~ 68 (112)
+|+++||+|+.. +..++++++++|+++.+|.... +..+++..++.++.++.+..... ..+.++++++
T Consensus 222 ~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (341)
T cd08290 222 PKLALNCVGGKS-ATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPEEKEDMLEELAELI 300 (341)
T ss_pred ceEEEECcCcHh-HHHHHHHhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHHHHHHHHHHHHHHH
Confidence 589999998754 6778999999999999986443 44556656678999999876422 2478899999
Q ss_pred HcCCCCCccceeeee---CcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 69 ASGKCPVRKLITHNF---KLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~---~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
.+|.+++. ....+ +++++.+|++.+.++. ..+|+|+.
T Consensus 301 ~~~~l~~~--~~~~~~~~~~~~~~~a~~~~~~~~-~~~k~v~~ 340 (341)
T cd08290 301 REGKLKAP--PVEKVTDDPLEEFKDALANALKGG-GGGKQVLV 340 (341)
T ss_pred HcCCccCC--cccccccCCHHHHHHHHHHHhhcC-CCCeEEEe
Confidence 99988654 33456 9999999999998877 45898875
No 98
>KOG0025|consensus
Probab=99.10 E-value=9e-10 Score=72.00 Aligned_cols=106 Identities=19% Similarity=0.163 Sum_probs=83.8
Q ss_pred cEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhhhhcCeeEEeEeccC------------CCHHHHHHHH
Q psy12355 2 MLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNACAKEIDILSCFRYV------------NDYPDALEMV 68 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~l~g~~~~~------------~~~~~~~~~~ 68 (112)
-+.+||+|+... ....+.|.+||.++.+|... .+++++...++||+++++|+|... +.+.++.+++
T Consensus 235 rLalNcVGGksa-~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~~l~ 313 (354)
T KOG0025|consen 235 RLALNCVGGKSA-TEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELCDLY 313 (354)
T ss_pred eEEEeccCchhH-HHHHHHHhcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHHHHH
Confidence 368999998774 56889999999999998654 589999999999999999999532 3467889999
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
.+|++... .....||++...|++.....-...+|-++.++
T Consensus 314 ~~G~i~~~--~~e~v~L~~~~tald~~L~~~~~~~Kq~i~~e 353 (354)
T KOG0025|consen 314 RRGKLKAP--NCEKVPLADHKTALDAALSKFGKSGKQIIVLE 353 (354)
T ss_pred HcCeeccc--cceeeechhhhHHHHHHHHHhccCCceEEEec
Confidence 99988653 23457999999999987766544467666553
No 99
>KOG1198|consensus
Probab=99.10 E-value=4.3e-10 Score=76.06 Aligned_cols=106 Identities=19% Similarity=0.277 Sum_probs=72.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhh----h---cCeeEEe-----Eec--cCCCHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNAC----A---KEIDILS-----CFR--YVNDYPDAL 65 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~----~---~~~~l~g-----~~~--~~~~~~~~~ 65 (112)
||+|+||+|++ +...++.++..+|+...++...+ ..+.+...+. . ......+ ... ..+.++.+.
T Consensus 226 ~DvVlD~vg~~-~~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 304 (347)
T KOG1198|consen 226 VDVVLDCVGGS-TLTKSLSCLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRWLYFVPSAEYLKALV 304 (347)
T ss_pred ccEEEECCCCC-ccccchhhhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceeeeeecCCHHHHHHHH
Confidence 79999999885 47888999999998777775443 2222211111 1 1111111 111 126788899
Q ss_pred HHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 66 EMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 66 ~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
+++++|++ .+.+.+.||++++.+|++++.++. ..||+++.++
T Consensus 305 ~~ie~gki--kp~i~~~~p~~~~~ea~~~~~~~~-~~GK~vl~~~ 346 (347)
T KOG1198|consen 305 ELIEKGKI--KPVIDSVYPFSQAKEAFEKLEKSH-ATGKVVLEKD 346 (347)
T ss_pred HHHHcCcc--cCCcceeeeHHHHHHHHHHHhhcC-CcceEEEEec
Confidence 99999966 446888999999999999999866 4599999865
No 100
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.10 E-value=1.9e-09 Score=71.82 Aligned_cols=107 Identities=20% Similarity=0.252 Sum_probs=82.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccc-cChhhhhhcCeeEEeEeccC-----------CCHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVS-VPLVNACAKEIDILSCFRYV-----------NDYPDALEM 67 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~-~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~ 67 (112)
+|+++||+|. ..+..++++++++|+++.+|...+ ... +++..++.++.++.++.... ..+++++++
T Consensus 211 ~d~~i~~~~~-~~~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (334)
T PTZ00354 211 VNLVLDCVGG-SYLSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKADLVASFEREVLPY 289 (334)
T ss_pred ceEEEECCch-HHHHHHHHHhccCCeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhHHHHHHHHHHHHHH
Confidence 5899999975 568899999999999999986543 333 66666777877888865322 124678889
Q ss_pred HHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355 68 VASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ 111 (112)
Q Consensus 68 ~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~ 111 (112)
+.++.+++ ++++.+++++++++++.+.+++ ..+|+++.+..
T Consensus 290 ~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~-~~~kvvv~~~~ 330 (334)
T PTZ00354 290 MEEGEIKP--IVDRTYPLEEVAEAHTFLEQNK-NIGKVVLTVNE 330 (334)
T ss_pred HHCCCccC--ccccEEcHHHHHHHHHHHHhCC-CCceEEEecCC
Confidence 99998764 4667899999999999998876 45899997753
No 101
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.09 E-value=1e-09 Score=73.09 Aligned_cols=99 Identities=26% Similarity=0.347 Sum_probs=78.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++||+|. ..+..++++++++|+++.+|... ....+++..+..++.++.+.+.+. +.++++++++...+ + .
T Consensus 224 ~d~vl~~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~ 298 (325)
T cd08264 224 ADVVINSLGS-SFWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGTRKELLELVKIAKDLK--V--K 298 (325)
T ss_pred CCEEEECCCH-HHHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCCHHHHHHHHHHHHcCC--c--e
Confidence 5899999986 57899999999999999999653 245667777778888888877544 67888999986443 2 3
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEE
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKI 105 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~ 105 (112)
+++.|+++++++|++.+.++. ..+|+
T Consensus 299 ~~~~~~~~~~~~a~~~~~~~~-~~~kv 324 (325)
T cd08264 299 VWKTFKLEEAKEALKELFSKE-RDGRI 324 (325)
T ss_pred eEEEEcHHHHHHHHHHHHcCC-Ccccc
Confidence 567899999999999998776 33554
No 102
>KOG1202|consensus
Probab=99.07 E-value=4.4e-10 Score=84.48 Aligned_cols=109 Identities=22% Similarity=0.285 Sum_probs=86.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccCh-hhhhhcCeeEEeEecc----C--CCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPL-VNACAKEIDILSCFRY----V--NDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~-~~~~~~~~~l~g~~~~----~--~~~~~~~~~~~~g~~ 73 (112)
+|+|++.. +.+-++++++||+.+||+..+|-.+-+.+-+. +..+.|+.++.|.... . ++|++++.++++|.-
T Consensus 1626 VdlVLNSL-aeEkLQASiRCLa~~GRFLEIGKfDLSqNspLGMavfLkNvsfHGiLLDsvmege~e~~~ev~~Lv~eGIk 1704 (2376)
T KOG1202|consen 1626 VDLVLNSL-AEEKLQASIRCLALHGRFLEIGKFDLSQNSPLGMAVFLKNVSFHGILLDSVMEGEEEMWREVAALVAEGIK 1704 (2376)
T ss_pred eeeehhhh-hHHHHHHHHHHHHhcCeeeeecceecccCCcchhhhhhcccceeeeehhhhhcCcHHHHHHHHHHHHhhhc
Confidence 57888877 56779999999999999999996553333333 3477899999998742 2 678999999988754
Q ss_pred C--CccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355 74 P--VRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQ 111 (112)
Q Consensus 74 ~--~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~ 111 (112)
. ..|+.+++|+=.++++||+.+.+|++ -||+|+.+..
T Consensus 1705 sGvV~PL~ttvF~~~qvE~AFRfMasGKH-IGKVvikvr~ 1743 (2376)
T KOG1202|consen 1705 SGVVRPLPTTVFHGQQVEDAFRFMASGKH-IGKVVIKVRA 1743 (2376)
T ss_pred cCceeccccccccHHHHHHHHHHHhccCc-cceEEEEEcc
Confidence 2 46788999999999999999999994 5999998753
No 103
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.06 E-value=1.8e-09 Score=71.97 Aligned_cols=103 Identities=23% Similarity=0.275 Sum_probs=78.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-cc-----ccChhhhhhcCeeEEeEeccC------CCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MV-----SVPLVNACAKEIDILSCFRYV------NDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~-----~~~~~~~~~~~~~l~g~~~~~------~~~~~~~~~~ 68 (112)
+|+++||+|. ..+..++++++++|+++.+|.... +. .++....+.++.++.+..... ..+.++++++
T Consensus 215 ~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (329)
T cd05288 215 IDVYFDNVGG-EILDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYADRFPEALAELAKWL 293 (329)
T ss_pred ceEEEEcchH-HHHHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHHHHHHHHHHHHHHH
Confidence 5899999986 568999999999999999986543 21 133455678888888876422 3577889999
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
.+|.+++.+. ..++++++.++++.+.+++ ..+|+++
T Consensus 294 ~~g~i~~~~~--~~~~l~~~~~a~~~~~~~~-~~gkvvv 329 (329)
T cd05288 294 AEGKLKYRED--VVEGLENAPEAFLGLFTGK-NTGKLVV 329 (329)
T ss_pred HCCCcccccc--ccccHHHHHHHHHHHhcCC-CccceeC
Confidence 9998876543 4589999999999998876 4578763
No 104
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.00 E-value=4.1e-09 Score=70.30 Aligned_cols=105 Identities=15% Similarity=0.206 Sum_probs=78.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-----------cccChhhhhhcCeeEEeEecc------CCCHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-----------VSVPLVNACAKEIDILSCFRY------VNDYPD 63 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-----------~~~~~~~~~~~~~~l~g~~~~------~~~~~~ 63 (112)
+|+++||+|. ..+..++++++++|+++.+|..... ..++ ...+.++.++.++... ...+.+
T Consensus 208 vd~v~~~~g~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (329)
T cd08250 208 VDVVYESVGG-EMFDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHYAKLIPQHLDR 285 (329)
T ss_pred CeEEEECCcH-HHHHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEEhHHHHHHHHHHHHH
Confidence 5899999986 6689999999999999999865421 1112 2356788888887532 245778
Q ss_pred HHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 64 ALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 64 ~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+++++.++.+++.....+.++++++++|++.+..+. ..+|++++
T Consensus 286 ~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~kvvv~ 329 (329)
T cd08250 286 LLQLYQRGKLVCEVDPTRFRGLESVADAVDYLYSGK-NIGKVVVE 329 (329)
T ss_pred HHHHHHCCCeeeeECCccccCHHHHHHHHHHHHcCC-CCceEEeC
Confidence 999999998876433455689999999999999877 45888763
No 105
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=98.99 E-value=6.4e-09 Score=69.50 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=77.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-------------CCHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-------------NDYPDALEM 67 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-------------~~~~~~~~~ 67 (112)
+|+++||+|.+..+..++++++++|+++.+|... ..+++..+..++.++.+..... ..+++++++
T Consensus 218 ~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (336)
T cd08252 218 VDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIEQHEILNEVADL 295 (336)
T ss_pred CCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--CcccchhhhcccceEEEEEeeccccccccchhhHHHHHHHHHHH
Confidence 5899999987778999999999999999998653 3444445556788777644211 236789999
Q ss_pred HHcCCCCCccc-eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 68 VASGKCPVRKL-ITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 68 ~~~g~~~~~~~-~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
+.+|.+++... ....++++++++|++.+.++. ..+|+++
T Consensus 296 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~vv~ 335 (336)
T cd08252 296 LDAGKLKTTLTETLGPINAENLREAHALLESGK-TIGKIVL 335 (336)
T ss_pred HHCCCEecceeeeecCCCHHHHHHHHHHHHcCC-ccceEEe
Confidence 99998865311 123479999999999999887 4588875
No 106
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=98.97 E-value=2.2e-08 Score=65.93 Aligned_cols=105 Identities=17% Similarity=0.218 Sum_probs=78.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc-cccChhhhhhcCeeEEeEec----cC-----CCHHHHHHHHHc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM-VSVPLVNACAKEIDILSCFR----YV-----NDYPDALEMVAS 70 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~-~~~~~~~~~~~~~~l~g~~~----~~-----~~~~~~~~~~~~ 70 (112)
+|++++|+|+ ..+..++++++++|+++.+|..... ..+++..+..+++++.+... .. ..+.++++++.+
T Consensus 206 ~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (320)
T cd05286 206 VDVVYDGVGK-DTFEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREELLARAAELFDAVAS 284 (320)
T ss_pred eeEEEECCCc-HhHHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHHHHHHHHHHHHHHC
Confidence 5899999987 4688899999999999999865432 23444444477887765431 11 235568888999
Q ss_pred CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+.+++. .++.|+++++++|++.+..+. ..+|+++.+
T Consensus 285 ~~l~~~--~~~~~~~~~~~~a~~~~~~~~-~~~~vv~~~ 320 (320)
T cd05286 285 GKLKVE--IGKRYPLADAAQAHRDLESRK-TTGKLLLIP 320 (320)
T ss_pred CCCcCc--ccceEcHHHHHHHHHHHHcCC-CCceEEEeC
Confidence 987653 567899999999999998877 458888764
No 107
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=98.96 E-value=8.8e-09 Score=68.13 Aligned_cols=103 Identities=16% Similarity=0.207 Sum_probs=76.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc---cChhhh--hhcCeeEEeEeccC---CCHHHHHHHHHcCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS---VPLVNA--CAKEIDILSCFRYV---NDYPDALEMVASGK 72 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~---~~~~~~--~~~~~~l~g~~~~~---~~~~~~~~~~~~g~ 72 (112)
+|+++||+|+ ..+..++++++++|+++.+|....... ...... ..+++++.+..... ..++++++++.++.
T Consensus 209 ~d~vl~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (320)
T cd08243 209 FDKVLELVGT-ATLKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTPLQELFDFVAAGH 287 (320)
T ss_pred ceEEEECCCh-HHHHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhhHHHHHHHHHHHHCCc
Confidence 5899999987 568999999999999999996433211 222222 25677777765332 35788999999998
Q ss_pred CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
+++ +.++.++++++++|++.+.++. ..+|+++
T Consensus 288 ~~~--~~~~~~~l~~~~~a~~~~~~~~-~~~kvvv 319 (320)
T cd08243 288 LDI--PPSKVFTFDEIVEAHAYMESNR-AFGKVVV 319 (320)
T ss_pred eec--ccccEEcHHHHHHHHHHHHhCC-CCCcEEe
Confidence 764 3567899999999999998877 4478775
No 108
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=98.91 E-value=3e-08 Score=65.33 Aligned_cols=103 Identities=22% Similarity=0.284 Sum_probs=78.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~ 68 (112)
+|+++|++|... +..++++++++|+++.+|.... ...+++..++.+++++.++.... ..+.++.+++
T Consensus 209 ~d~vi~~~g~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (323)
T cd05276 209 VDVILDMVGGDY-LARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAALAAAFREHVWPLF 287 (323)
T ss_pred eEEEEECCchHH-HHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHHHHHHHHHHHHHHH
Confidence 489999998755 7889999999999999986543 34455555667889988876422 1246678888
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
.++.+++ +.++.|++++++++++.+..+. ..+|+++
T Consensus 288 ~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~-~~~kvv~ 323 (323)
T cd05276 288 ASGRIRP--VIDKVFPLEEAAEAHRRMESNE-HIGKIVL 323 (323)
T ss_pred HCCCccC--CcceEEcHHHHHHHHHHHHhCC-CcceEeC
Confidence 8887754 4678899999999999998776 3478763
No 109
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=98.89 E-value=3e-08 Score=66.72 Aligned_cols=105 Identities=18% Similarity=0.126 Sum_probs=71.2
Q ss_pred CcEEEEcccChHHHHHHHhhccC--CcEEEEEecCCCccccChhhhhhcCeeEEeEec----cC----CCHHHHHHHHHc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKM--GGKLMLVGMGPQMVSVPLVNACAKEIDILSCFR----YV----NDYPDALEMVAS 70 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~--~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~----~~----~~~~~~~~~~~~ 70 (112)
+|+++|++|++..+..+++++++ +|+++.+|.......++ ............... .. ..+.++.+++.+
T Consensus 222 ~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (339)
T cd08249 222 LRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETEPR-KGVKVKFVLGYTVFGEIPEDREFGEVFWKYLPELLEE 300 (339)
T ss_pred eeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccccCC-CCceEEEEEeeeecccccccccchHHHHHHHHHHHHc
Confidence 58999999886778999999999 99999998655322111 011111111111110 11 356779999999
Q ss_pred CCCCCccceeeeeC--cccHHHHHHHHhcCCCCceEEEEe
Q psy12355 71 GKCPVRKLITHNFK--LEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 71 g~~~~~~~~~~~~~--l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+++++.+. ..++ ++++++|++.+..++...+|+|++
T Consensus 301 ~~l~~~~~--~~~~~~~~~~~~a~~~~~~~~~~~~kvvv~ 338 (339)
T cd08249 301 GKLKPHPV--RVVEGGLEGVQEGLDLLRKGKVSGEKLVVR 338 (339)
T ss_pred CCccCCCc--eecCCcHHHHHHHHHHHHCCCccceEEEEe
Confidence 98876533 3467 999999999999877234899876
No 110
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=98.89 E-value=1.4e-08 Score=67.54 Aligned_cols=71 Identities=20% Similarity=0.351 Sum_probs=61.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASG 71 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g 71 (112)
+|+++||+|....+..++++++++|+++.+|...+ ...++...++++++++.|++.+. ++++++++++++|
T Consensus 234 vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~ 306 (306)
T cd08258 234 ADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSSTPASWETALRLLASG 306 (306)
T ss_pred CCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCchHhHHHHHHHHhcC
Confidence 58999999877788999999999999999998653 46667778889999999999865 8899999999875
No 111
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=98.87 E-value=3.9e-08 Score=64.84 Aligned_cols=103 Identities=20% Similarity=0.437 Sum_probs=78.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc-cChhhhhhcCeeEEeEeccC----------CCHHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS-VPLVNACAKEIDILSCFRYV----------NDYPDALEMVA 69 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~-~~~~~~~~~~~~l~g~~~~~----------~~~~~~~~~~~ 69 (112)
+|.++||+|. ..+..++++++++|+++.+|....... ++......++.++.+..... ..+.++++++.
T Consensus 209 ~d~v~~~~g~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (323)
T cd08241 209 VDVVYDPVGG-DVFEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPELLRANLAELFDLLA 287 (323)
T ss_pred cEEEEECccH-HHHHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHHHHHHHHHHHHHHH
Confidence 5899999986 557889999999999999987543322 34444567888888765321 34677889999
Q ss_pred cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
++.+++ +.++.|+++++.++++.+..+. ..+|+++
T Consensus 288 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~vvv 322 (323)
T cd08241 288 EGKIRP--HVSAVFPLEQAAEALRALADRK-ATGKVVL 322 (323)
T ss_pred CCCccc--ccceEEcHHHHHHHHHHHHhCC-CCCcEEe
Confidence 997753 4678899999999999988776 4578775
No 112
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=98.84 E-value=6.3e-08 Score=63.91 Aligned_cols=104 Identities=22% Similarity=0.333 Sum_probs=77.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g~~ 73 (112)
+|++++|+|... ....+++++++|+++.+|.......+++..++.++.++.+...+. ..+.++.+++.++.+
T Consensus 214 ~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 292 (325)
T cd08253 214 VDVIIEVLANVN-LAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAAAEAIAAGLADGAL 292 (325)
T ss_pred eEEEEECCchHH-HHHHHHhhCCCCEEEEEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHHHHHHHHHHHCCCc
Confidence 589999998754 688899999999999998754334455555567777777765332 235566778888876
Q ss_pred CCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
++ +.++.+++++++++++.+.++. ..+|++++
T Consensus 293 ~~--~~~~~~~~~~~~~~~~~~~~~~-~~~kvv~~ 324 (325)
T cd08253 293 RP--VIAREYPLEEAAAAHEAVESGG-AIGKVVLD 324 (325)
T ss_pred cC--ccccEEcHHHHHHHHHHHHcCC-CcceEEEe
Confidence 54 3667899999999999998876 45898875
No 113
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=98.84 E-value=2e-08 Score=65.94 Aligned_cols=99 Identities=23% Similarity=0.315 Sum_probs=74.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc--CCCHHHHHHHHHcCCCCCccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY--VNDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~--~~~~~~~~~~~~~g~~~~~~~ 78 (112)
+|+++||+|+. ....++++++++|+++.+|....... ....++.++...... ...+.++++++.++.++ ++
T Consensus 209 ~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 281 (309)
T cd05289 209 VDAVLDTVGGE-TLARSLALVKPGGRLVSIAGPPPAEQ----AAKRRGVRAGFVFVEPDGEQLAELAELVEAGKLR--PV 281 (309)
T ss_pred ceEEEECCchH-HHHHHHHHHhcCcEEEEEcCCCcchh----hhhhccceEEEEEecccHHHHHHHHHHHHCCCEE--Ee
Confidence 58999999876 57889999999999999986543221 333455555554322 35788899999999764 35
Q ss_pred eeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 79 ITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
+++.|+++++.++++.+..+. ..+|+++
T Consensus 282 ~~~~~~~~~~~~a~~~~~~~~-~~~kvv~ 309 (309)
T cd05289 282 VDRVFPLEDAAEAHERLESGH-ARGKVVL 309 (309)
T ss_pred eccEEcHHHHHHHHHHHHhCC-CCCcEeC
Confidence 778899999999999998876 3477763
No 114
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.84 E-value=4.4e-08 Score=65.31 Aligned_cols=103 Identities=19% Similarity=0.279 Sum_probs=72.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc--ccC--h----------hhh--hhcCeeEEeEecc-------
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV--SVP--L----------VNA--CAKEIDILSCFRY------- 57 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~--~~~--~----------~~~--~~~~~~l~g~~~~------- 57 (112)
+|+++||+|+.. +..++++++++|+++.+|...... .++ . ... ..++.+..+....
T Consensus 204 ~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 282 (331)
T cd08273 204 VDVVFDGVGGES-YEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAEDPKL 282 (331)
T ss_pred ceEEEECCchHH-HHHHHHHhcCCCEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccCHHH
Confidence 589999998766 889999999999999999655321 111 1 011 2233333333221
Q ss_pred -CCCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 58 -VNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 58 -~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
.+.+.++++++.+|.+++ ++++.+++++++++++.+.+++ ..+|+|+
T Consensus 283 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~a~~~~~~~~-~~gkvv~ 330 (331)
T cd08273 283 FRQDLTELLDLLAKGKIRP--KIAKRLPLSEVAEAHRLLESGK-VVGKIVL 330 (331)
T ss_pred HHHHHHHHHHHHHCCCccC--CcceEEcHHHHHHHHHHHHcCC-CcceEEe
Confidence 145778999999998764 4677899999999999998877 4588775
No 115
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.82 E-value=1.4e-07 Score=62.88 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=78.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--cc---------------ccChhhhhhcCeeEEeEecc---C--
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MV---------------SVPLVNACAKEIDILSCFRY---V-- 58 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~---------------~~~~~~~~~~~~~l~g~~~~---~-- 58 (112)
+|+++||+|+. ....++++++++|+++.+|.... .. .++...++.+++++.++... .
T Consensus 207 ~d~v~~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (337)
T cd08275 207 VDIVLDALGGE-DTRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSVLGFNLGWLFEER 285 (337)
T ss_pred ceEEEECCcHH-HHHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceEEEeechhhhhCh
Confidence 58999999875 57889999999999999986542 11 12224557788888876531 1
Q ss_pred ----CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 59 ----NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 59 ----~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
..+.++++++.++.+++ +.++.|++++++++++.+.++. ..+|+++.+
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~kvv~~~ 337 (337)
T cd08275 286 ELLTEVMDKLLKLYEEGKIKP--KIDSVFPFEEVGEAMRRLQSRK-NIGKVVLTP 337 (337)
T ss_pred HHHHHHHHHHHHHHHCCCCCC--ceeeEEcHHHHHHHHHHHHcCC-CcceEEEeC
Confidence 23677888999997754 4667899999999999998877 458988763
No 116
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=98.82 E-value=8.1e-08 Score=64.27 Aligned_cols=102 Identities=13% Similarity=0.138 Sum_probs=72.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc-----C--------CCHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-----V--------NDYPDALEM 67 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~-----~--------~~~~~~~~~ 67 (112)
+|+++|++|....+..++++++++|+++.++.. ..+++..+..+++++.+.... . ..+++++++
T Consensus 217 vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 293 (336)
T TIGR02817 217 VSYVFSLTHTDQHFKEIVELLAPQGRFALIDDP---AELDISPFKRKSISLHWEFMFTRSMFQTADMIEQHHLLNRVARL 293 (336)
T ss_pred CCEEEEcCCcHHHHHHHHHHhccCCEEEEEccc---ccccchhhhhcceEEEEEEeecccccchhhhhhhHHHHHHHHHH
Confidence 589999987777789999999999999988532 234444455555665543211 0 236789999
Q ss_pred HHcCCCCCccceeeee---CcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 68 VASGKCPVRKLITHNF---KLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 68 ~~~g~~~~~~~~~~~~---~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+.++.+++ ++++.+ +++++++|++.+.+++. .+|+++.
T Consensus 294 ~~~~~l~~--~~~~~~~~~~~~~~~~a~~~~~~~~~-~gkvvv~ 334 (336)
T TIGR02817 294 VDAGKIRT--TLAETFGTINAANLKRAHALIESGKA-RGKIVLE 334 (336)
T ss_pred HHCCCeec--cchhccCCCCHHHHHHHHHHHHcCCc-cceEEEe
Confidence 99998764 334444 47899999999998874 5888764
No 117
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=98.81 E-value=1e-07 Score=63.38 Aligned_cols=103 Identities=11% Similarity=0.154 Sum_probs=77.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-------CCHHHHHHHHHcCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-------NDYPDALEMVASGK 72 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-------~~~~~~~~~~~~g~ 72 (112)
+|.++|++|. ..+..++..++.+|+++.+|.... +..+++..++.++.++.+..... +.+.++.+++.++.
T Consensus 213 ~~~~~d~~~~-~~~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (324)
T cd08288 213 WAGAVDTVGG-HTLANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWARLARDLDPAL 291 (324)
T ss_pred ccEEEECCcH-HHHHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHHHHHHHhcCC
Confidence 4678999976 457788999999999999997542 33345555667899999875311 24556777787886
Q ss_pred CCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 73 CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
+++ +.+.++++++++|++.+.+++ ..+|++++
T Consensus 292 ~~~---i~~~~~~~~~~~a~~~~~~~~-~~~~vvv~ 323 (324)
T cd08288 292 LEA---LTREIPLADVPDAAEAILAGQ-VRGRVVVD 323 (324)
T ss_pred ccc---cceeecHHHHHHHHHHHhcCC-ccCeEEEe
Confidence 643 367899999999999999888 45898875
No 118
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.80 E-value=1.2e-07 Score=62.68 Aligned_cols=102 Identities=21% Similarity=0.265 Sum_probs=75.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEecc------------CCCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY------------VNDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~------------~~~~~~~~~~~ 68 (112)
+|+++||+|.. ....++++++++|+++.+|... +. +......+++++.+.... ...+.++++++
T Consensus 212 ~d~v~~~~~~~-~~~~~~~~l~~~g~~v~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 287 (326)
T cd08272 212 FDVVFDTVGGE-TLDASFEAVALYGRVVSILGGA-TH--DLAPLSFRNATYSGVFTLLPLLTGEGRAHHGEILREAARLV 287 (326)
T ss_pred CcEEEECCChH-HHHHHHHHhccCCEEEEEecCC-cc--chhhHhhhcceEEEEEcccccccccchhhHHHHHHHHHHHH
Confidence 58999999874 5788999999999999998653 22 222233677777766522 13467788889
Q ss_pred HcCCCCCcccee-eeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 69 ASGKCPVRKLIT-HNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 69 ~~g~~~~~~~~~-~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
.++.+++ +++ +.|+++++.++++.+.++. ..+|+++++
T Consensus 288 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~~ 326 (326)
T cd08272 288 ERGQLRP--LLDPRTFPLEEAAAAHARLESGS-ARGKIVIDV 326 (326)
T ss_pred HCCCccc--ccccceecHHHHHHHHHHHHcCC-cccEEEEEC
Confidence 8987653 444 7899999999999998776 458988763
No 119
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=98.80 E-value=1.5e-07 Score=62.14 Aligned_cols=104 Identities=21% Similarity=0.273 Sum_probs=79.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEeccC-----------CCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRYV-----------NDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~~-----------~~~~~~~~~~ 68 (112)
+|++++|+|.. .+..++++++++|+++.+|.... ...+++..++.+++++.+..... ..+.++++++
T Consensus 209 ~d~~i~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (325)
T TIGR02824 209 VDVILDIVGGS-YLNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAAIAAELREHVWPLL 287 (325)
T ss_pred eEEEEECCchH-HHHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHHHHHHHHHHHHHHH
Confidence 48999999864 57889999999999999997542 33556666668999988876321 1245677888
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
.++.+++ +.++.++++++.++++.+.++. ..+|+++.
T Consensus 288 ~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~ 324 (325)
T TIGR02824 288 ASGRVRP--VIDKVFPLEDAAQAHALMESGD-HIGKIVLT 324 (325)
T ss_pred HCCcccC--ccccEEeHHHHHHHHHHHHhCC-CcceEEEe
Confidence 8887754 4677899999999999998876 45888875
No 120
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=98.75 E-value=1.3e-07 Score=63.78 Aligned_cols=105 Identities=16% Similarity=0.102 Sum_probs=72.2
Q ss_pred CcEEEEcccChHHHHHHHhhcc---CCcEEEEEe-cCCCcc---cc--------Ch----hhhhhcCeeEEeEeccC--C
Q psy12355 1 MMLYLDPLGTENCLTLGINVTK---MGGKLMLVG-MGPQMV---SV--------PL----VNACAKEIDILSCFRYV--N 59 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~---~~G~iv~~g-~~~~~~---~~--------~~----~~~~~~~~~l~g~~~~~--~ 59 (112)
+|+++||+|.......++++++ ++|+++.++ ....+. .+ .. ....++...+....... .
T Consensus 226 ~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (352)
T cd08247 226 FDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDPNAD 305 (352)
T ss_pred ceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecCCHH
Confidence 5899999988667888999999 999999875 221111 11 01 11223333333322112 3
Q ss_pred CHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEe
Q psy12355 60 DYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108 (112)
Q Consensus 60 ~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~ 108 (112)
.++++++++.++.+++ ++++.++++++++|++.+.+++ ..+|+++.
T Consensus 306 ~~~~~~~~~~~~~l~~--~~~~~~~l~~~~~a~~~~~~~~-~~gkvvi~ 351 (352)
T cd08247 306 WIEKCAELIADGKVKP--PIDSVYPFEDYKEAFERLKSNR-AKGKVVIK 351 (352)
T ss_pred HHHHHHHHHhCCCeEe--eeccEecHHHHHHHHHHHHcCC-CCCcEEEe
Confidence 5788999999997753 4677899999999999998877 45898875
No 121
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.72 E-value=3.3e-07 Score=60.63 Aligned_cols=105 Identities=20% Similarity=0.223 Sum_probs=76.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChhhhhhcCeeEEeEecc-----C----CCHHHHHHHHHc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLVNACAKEIDILSCFRY-----V----NDYPDALEMVAS 70 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~l~g~~~~-----~----~~~~~~~~~~~~ 70 (112)
+|++++++|. .....++++++++|+++.+|.... ...++....+.+++++.+.... + ..++++.+++.+
T Consensus 214 ~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (328)
T cd08268 214 VDVVFDPVGG-PQFAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEARRRAIAFILDGLAS 292 (328)
T ss_pred ceEEEECCch-HhHHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHHHHHHHHHHHHHHC
Confidence 5899999987 557889999999999999986543 3344544457788887776532 1 234555666777
Q ss_pred CCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 71 GKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 71 g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
+.+++ +.++.|+++++.++++.+.++. ..+|+++++
T Consensus 293 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~vv~~~ 328 (328)
T cd08268 293 GALKP--VVDRVFPFDDIVEAHRYLESGQ-QIGKIVVTP 328 (328)
T ss_pred CCCcC--CcccEEcHHHHHHHHHHHHcCC-CCceEEEeC
Confidence 76654 3567899999999999998776 458988763
No 122
>KOG1196|consensus
Probab=98.66 E-value=1.5e-07 Score=62.05 Aligned_cols=106 Identities=17% Similarity=0.151 Sum_probs=83.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC---Ccccc---ChhhhhhcCeeEEeEeccC------CCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP---QMVSV---PLVNACAKEIDILSCFRYV------NDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~---~~~~~---~~~~~~~~~~~l~g~~~~~------~~~~~~~~~~ 68 (112)
.|+.||.+|+ ..+.+.+..++.+||++..|+-. .+.+. +...++.|++.+.|+.... +-+.++..++
T Consensus 224 IDiYfeNVGG-~~lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d~~~k~ld~l~~~i 302 (343)
T KOG1196|consen 224 IDIYFENVGG-KMLDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLDKYPKFLDFLLPYI 302 (343)
T ss_pred ceEEEeccCc-HHHHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhhhhHHHHHHHHHHH
Confidence 4899999987 55899999999999999999532 12221 3456889999999977532 4467788899
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeC
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~ 110 (112)
.+|+++...-+.. -|+..+.|+.-+.+|+ +.||.++.+.
T Consensus 303 kegKI~y~edi~~--Glen~P~A~vglf~Gk-NvGKqiv~va 341 (343)
T KOG1196|consen 303 KEGKITYVEDIAD--GLENGPSALVGLFHGK-NVGKQLVKVA 341 (343)
T ss_pred hcCceEEehhHHH--HHhccHHHHHHHhccC-cccceEEEee
Confidence 9999987554433 5999999999999999 7799888764
No 123
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=98.65 E-value=2.5e-07 Score=62.24 Aligned_cols=103 Identities=19% Similarity=0.242 Sum_probs=70.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--c--ccc---------Chhhhhh----cCeeEEeE-ec-cCCCH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--M--VSV---------PLVNACA----KEIDILSC-FR-YVNDY 61 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~--~~~---------~~~~~~~----~~~~l~g~-~~-~~~~~ 61 (112)
+|+++||+|.. ....++++++++|+++.+|.... . ..+ .+..... +...+... .. ....+
T Consensus 228 vd~vi~~~g~~-~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (350)
T cd08248 228 FDVILDTVGGD-TEKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGSAL 306 (350)
T ss_pred CCEEEECCChH-HHHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHHHH
Confidence 58999999876 68999999999999999985431 1 111 0011111 11111111 11 12568
Q ss_pred HHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 62 PDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 62 ~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
.++++++.+|.+++ ++++.|+++++.+|++.+.++. ..+|+++
T Consensus 307 ~~~~~~~~~g~~~~--~~~~~~~~~~~~~a~~~~~~~~-~~~~vv~ 349 (350)
T cd08248 307 DELAKLVEDGKIKP--VIDKVFPFEEVPEAYEKVESGH-ARGKTVI 349 (350)
T ss_pred HHHHHHHhCCCEec--ccceeecHHHHHHHHHHHhcCC-CceEEEe
Confidence 89999999998754 4678899999999999998876 4578876
No 124
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=98.64 E-value=4e-07 Score=59.05 Aligned_cols=102 Identities=14% Similarity=0.195 Sum_probs=72.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhhhcCeeEEeEec-----c----CCCHHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFR-----Y----VNDYPDALEMVA 69 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~~~~~~l~g~~~-----~----~~~~~~~~~~~~ 69 (112)
+|+++|++|. ..+..++++++++|+++.+|.... ...+++.. +.+++++.+... . ...+.++++++.
T Consensus 176 ~d~vi~~~~~-~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (288)
T smart00829 176 VDVVLNSLAG-EFLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDRIRELLAEVLELFA 253 (288)
T ss_pred cEEEEeCCCH-HHHHHHHHhccCCcEEEEEcCcCCccccccchhh-hcCCceEEEEEHHHhhcChHHHHHHHHHHHHHHH
Confidence 4899999985 668889999999999999986542 23333332 345555555431 1 134677888998
Q ss_pred cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
++.+++. ..+.|+++++.++++.+..+. ..+|+++
T Consensus 254 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~ivv 288 (288)
T smart00829 254 EGVLRPL--PVTVFPISDVEDAFRYMQQGK-HIGKVVL 288 (288)
T ss_pred CCCccCc--CceEEcHHHHHHHHHHHhcCC-CcceEeC
Confidence 9987653 457799999999999998876 4477763
No 125
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=98.63 E-value=4e-07 Score=59.06 Aligned_cols=102 Identities=14% Similarity=0.155 Sum_probs=72.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCc--cccChhhhhhcCeeEEeEec-----c-----CCCHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQM--VSVPLVNACAKEIDILSCFR-----Y-----VNDYPDALEMV 68 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~--~~~~~~~~~~~~~~l~g~~~-----~-----~~~~~~~~~~~ 68 (112)
+|+++||+|+. .+..++++++++|+++.+|..... ..++... +.+++++..... . ...+.++++++
T Consensus 180 ~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (293)
T cd05195 180 VDVVLNSLSGE-LLRASWRCLAPFGRFVEIGKRDILSNSKLGMRP-FLRNVSFSSVDLDQLARERPELLRELLREVLELL 257 (293)
T ss_pred ceEEEeCCCch-HHHHHHHhcccCceEEEeeccccccCCccchhh-hccCCeEEEEeHHHHhhhChHHHHHHHHHHHHHH
Confidence 58999999876 689999999999999999865431 2222222 234445444321 1 13577888999
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
.+++++ ++.+..++++++.++++.+.++. ..+|+++
T Consensus 258 ~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~-~~~~ivv 293 (293)
T cd05195 258 EAGVLK--PLPPTVVPSASEIDAFRLMQSGK-HIGKVVL 293 (293)
T ss_pred HCCCcc--cCCCeeechhhHHHHHHHHhcCC-CCceecC
Confidence 999775 35667899999999999999877 4477763
No 126
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.61 E-value=5.1e-07 Score=59.69 Aligned_cols=104 Identities=23% Similarity=0.310 Sum_probs=68.1
Q ss_pred CcEEEEcccC-hHHHHHHHhhccCCcEEEEEecCCCccccC-----hhh-hhhcCeeEEeEeccCCCHHHHHHHHHcCCC
Q psy12355 1 MMLYLDPLGT-ENCLTLGINVTKMGGKLMLVGMGPQMVSVP-----LVN-ACAKEIDILSCFRYVNDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d~~g~-~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~-----~~~-~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~ 73 (112)
+|+++||+|. ..........++++|+++.+|......... ... ...+.+...........+.++++++.++.+
T Consensus 209 ~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 288 (319)
T cd08267 209 YDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEEGKL 288 (319)
T ss_pred CcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccccccccccchhhccccceEEEEEecCCHHHHHHHHHHHHCCCe
Confidence 5899999984 233344444599999999999755321111 111 222333322221123678889999999977
Q ss_pred CCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 74 ~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
++ ++++.|+++++++|++.+.++. ..+|+++
T Consensus 289 ~~--~~~~~~~~~~i~~a~~~~~~~~-~~~~vvv 319 (319)
T cd08267 289 KP--VIDSVYPLEDAPEAYRRLKSGR-ARGKVVI 319 (319)
T ss_pred ee--eeeeEEcHHHHHHHHHHHhcCC-CCCcEeC
Confidence 54 4778899999999999998876 4477763
No 127
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=98.59 E-value=5.7e-07 Score=59.61 Aligned_cols=105 Identities=19% Similarity=0.230 Sum_probs=73.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccC--hhhhhhcCeeEEeEeccC---------CCHHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVP--LVNACAKEIDILSCFRYV---------NDYPDALEMVA 69 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~--~~~~~~~~~~l~g~~~~~---------~~~~~~~~~~~ 69 (112)
+|++++|+|... ...++++++++|+++.+|......... ...+.++++.+.+.+... +.+.++++++.
T Consensus 210 ~d~vi~~~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (325)
T cd08271 210 VDAVLDTVGGET-AAALAPTLAFNGHLVCIQGRPDASPDPPFTRALSVHEVALGAAHDHGDPAAWQDLRYAGEELLELLA 288 (325)
T ss_pred CcEEEECCCcHh-HHHHHHhhccCCEEEEEcCCCCCcchhHHhhcceEEEEEecccccccchhhHHHHHHHHHHHHHHHH
Confidence 589999998765 567899999999999997443211111 122445555555543221 23567888999
Q ss_pred cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEee
Q psy12355 70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109 (112)
Q Consensus 70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~ 109 (112)
++.+++ +.++.|+++++.++++.+.++. ..+|+++++
T Consensus 289 ~~~i~~--~~~~~~~~~~~~~a~~~~~~~~-~~~kiv~~~ 325 (325)
T cd08271 289 AGKLEP--LVIEVLPFEQLPEALRALKDRH-TRGKIVVTI 325 (325)
T ss_pred CCCeee--ccceEEcHHHHHHHHHHHHcCC-ccceEEEEC
Confidence 998754 3567899999999999998876 458988753
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=98.47 E-value=5.5e-07 Score=63.78 Aligned_cols=80 Identities=10% Similarity=0.124 Sum_probs=63.4
Q ss_pred CcEEEEcccChH-----HH-HHHHhhccCCcEEEEEecCC-Cc--cccChhhhhh-cCeeEEeEeccCCCHH-HHHHHHH
Q psy12355 1 MMLYLDPLGTEN-----CL-TLGINVTKMGGKLMLVGMGP-QM--VSVPLVNACA-KEIDILSCFRYVNDYP-DALEMVA 69 (112)
Q Consensus 1 ~D~v~d~~g~~~-----~~-~~~~~~l~~~G~iv~~g~~~-~~--~~~~~~~~~~-~~~~l~g~~~~~~~~~-~~~~~~~ 69 (112)
+|++|+|+|.+. .+ +++++.+++||+++.+|... +. .+++...++. +++++.|.+..+..++ ++.+++.
T Consensus 249 aDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p~~As~lla 328 (509)
T PRK09424 249 VDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLPTQSSQLYG 328 (509)
T ss_pred CCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHHHHHHHHHH
Confidence 699999998643 54 99999999999999999853 43 4444455665 8999999997775555 6999999
Q ss_pred cCCCCCcccee
Q psy12355 70 SGKCPVRKLIT 80 (112)
Q Consensus 70 ~g~~~~~~~~~ 80 (112)
++.+++.++++
T Consensus 329 ~~~i~l~~lIt 339 (509)
T PRK09424 329 TNLVNLLKLLC 339 (509)
T ss_pred hCCccHHHHhc
Confidence 99988877766
No 129
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=98.46 E-value=8.2e-07 Score=58.20 Aligned_cols=103 Identities=17% Similarity=0.295 Sum_probs=70.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC--ccccChhhhh----hcCeeEEeEeccC-----CCHHHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNAC----AKEIDILSCFRYV-----NDYPDALEMVA 69 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~--~~~~~~~~~~----~~~~~l~g~~~~~-----~~~~~~~~~~~ 69 (112)
+|+++|+++. .....++++++++|+++.+|.... ...++...+. ++...+.+..... +.+.++.+++.
T Consensus 190 ~d~v~~~~~~-~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (303)
T cd08251 190 VDVVINTLSG-EAIQKGLNCLAPGGRYVEIAMTALKSAPSVDLSVLSNNQSFHSVDLRKLLLLDPEFIADYQAEMVSLVE 268 (303)
T ss_pred ceEEEECCcH-HHHHHHHHHhccCcEEEEEeccCCCccCccChhHhhcCceEEEEehHHhhhhCHHHHHHHHHHHHHHHH
Confidence 5899999964 568889999999999999986542 2223332221 2222222222111 35777889999
Q ss_pred cCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 70 SGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 70 ~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
+|.+++ +.++.|++++++++++.+.+++ ..+|+++
T Consensus 269 ~g~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~iv~ 303 (303)
T cd08251 269 EGELRP--TVSRIFPFDDIGEAYRYLSDRE-NIGKVVV 303 (303)
T ss_pred CCCccC--CCceEEcHHHHHHHHHHHHhCC-CcceEeC
Confidence 998754 4667899999999999998877 4578763
No 130
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=98.15 E-value=1.3e-05 Score=51.72 Aligned_cols=67 Identities=21% Similarity=0.348 Sum_probs=52.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccc-cChhhhhhcCeeEEeEeccC-CCHHHHHHH
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVS-VPLVNACAKEIDILSCFRYV-NDYPDALEM 67 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~-~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~ 67 (112)
+|+++|++|....+..++++++++|+++.+|....... ......+.+++++.++..+. .++++++++
T Consensus 202 ~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (271)
T cd05188 202 ADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTREDFEEALDL 270 (271)
T ss_pred CCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecCCHHHHHHHHhh
Confidence 58999999875668899999999999999997654222 23456788999999998765 577777765
No 131
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=97.85 E-value=9.9e-05 Score=48.49 Aligned_cols=96 Identities=10% Similarity=0.148 Sum_probs=57.5
Q ss_pred CcEEEE-cc-----cChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeE-eccCCCHHHHHHHHHcCCC
Q psy12355 1 MMLYLD-PL-----GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSC-FRYVNDYPDALEMVASGKC 73 (112)
Q Consensus 1 ~D~v~d-~~-----g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~-~~~~~~~~~~~~~~~~g~~ 73 (112)
||+|+. ++ .....+..+.++|++||++++.+..... ++ ...+.+...+.+. ........++.+++.+..+
T Consensus 147 fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~aGf 223 (272)
T PRK11873 147 VDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRG-EL--PEEIRNDAELYAGCVAGALQEEEYLAMLAEAGF 223 (272)
T ss_pred eeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccC-CC--CHHHHHhHHHHhccccCCCCHHHHHHHHHHCCC
Confidence 467773 32 2346789999999999999998764432 11 1222223222222 2222456677777776333
Q ss_pred -CCccceeeeeCcccHHHHHHHH--hcCC
Q psy12355 74 -PVRKLITHNFKLEEAVEAFKTA--SKKA 99 (112)
Q Consensus 74 -~~~~~~~~~~~l~~~~~a~~~~--~~~~ 99 (112)
.........+++++..++++.+ .++.
T Consensus 224 ~~v~i~~~~~~~l~~~~~~~~~~~~~~~~ 252 (272)
T PRK11873 224 VDITIQPKREYRIPDAREFLEDWGIAPGR 252 (272)
T ss_pred CceEEEeccceecccHHHHHHHhcccccc
Confidence 3333344568899999999998 5544
No 132
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.17 E-value=0.043 Score=38.70 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=32.3
Q ss_pred CcEEEEcccChHHHH-HHHhhccCCcEEEEEecCCCcccc
Q psy12355 1 MMLYLDPLGTENCLT-LGINVTKMGGKLMLVGMGPQMVSV 39 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~-~~~~~l~~~G~iv~~g~~~~~~~~ 39 (112)
+|++++|+|+...+. ..++.+++|+.++.+|..+.++.+
T Consensus 268 aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~Eid~ 307 (425)
T PRK05476 268 GDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDNEIDV 307 (425)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCCccCh
Confidence 599999999988776 588999999999999977654433
No 133
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=93.18 E-value=0.19 Score=35.30 Aligned_cols=34 Identities=12% Similarity=0.153 Sum_probs=29.9
Q ss_pred CcEEEEcccChHHHHH-HHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTL-GINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~-~~~~l~~~G~iv~~g~~~ 34 (112)
+|++|+++|+...+.. .+..+++++.++.+|..+
T Consensus 251 aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~ 285 (406)
T TIGR00936 251 GDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD 285 (406)
T ss_pred CCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 5899999999888875 889999999999998764
No 134
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=92.74 E-value=0.5 Score=34.30 Aligned_cols=57 Identities=5% Similarity=0.042 Sum_probs=38.2
Q ss_pred CcEEEEcc---cChH---HHHHHHhhccCCcEEEEEecCCC-ccccC--hhhhhh-cCeeEEeEecc
Q psy12355 1 MMLYLDPL---GTEN---CLTLGINVTKMGGKLMLVGMGPQ-MVSVP--LVNACA-KEIDILSCFRY 57 (112)
Q Consensus 1 ~D~v~d~~---g~~~---~~~~~~~~l~~~G~iv~~g~~~~-~~~~~--~~~~~~-~~~~l~g~~~~ 57 (112)
+|++|+|+ |.+. ..+..++.+++|+.++.++...+ ..+.. ...... .++++.|....
T Consensus 248 ~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~nl 314 (511)
T TIGR00561 248 VDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYTDL 314 (511)
T ss_pred CCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeCCc
Confidence 69999999 6544 56778999999999999986543 43332 111222 34777776543
No 135
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=92.43 E-value=0.21 Score=34.06 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=30.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+|++|+|.....+.+.+.++.|++.+.++.+.
T Consensus 90 vDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~ 123 (325)
T TIGR01532 90 VDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPG 123 (325)
T ss_pred CCEEEEccchhccHHHHHHHHHcCCeEEEecCCC
Confidence 6999999999888888999999999999998764
No 136
>PLN02494 adenosylhomocysteinase
Probab=92.33 E-value=0.2 Score=35.87 Aligned_cols=35 Identities=9% Similarity=0.126 Sum_probs=30.2
Q ss_pred CcEEEEcccChHHH-HHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTENCL-TLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|++++|+|+...+ ...++.++++|.++.+|.++.
T Consensus 310 ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~~ 345 (477)
T PLN02494 310 ADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFDN 345 (477)
T ss_pred CCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCCC
Confidence 59999999987754 789999999999999997653
No 137
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=92.11 E-value=1.5 Score=29.57 Aligned_cols=53 Identities=8% Similarity=-0.031 Sum_probs=37.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCF 55 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~ 55 (112)
+|+||+|++....-...++.+++++.++.++..++...+ ...-.++++..+..
T Consensus 211 aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~~~~ 263 (296)
T PRK08306 211 IDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKALLAP 263 (296)
T ss_pred CCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEEEEC
Confidence 599999997655456678899999999999876654444 23444556665544
No 138
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=91.31 E-value=0.22 Score=30.21 Aligned_cols=35 Identities=9% Similarity=0.073 Sum_probs=29.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|+|+||+|.-.+...+...+..|-+=|+++.+..
T Consensus 89 vDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~ 123 (151)
T PF00044_consen 89 VDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSK 123 (151)
T ss_dssp ESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-S
T ss_pred ccEEEeccccceecccccccccccccceeeccccc
Confidence 58999999987778888899999999999987765
No 139
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.14 E-value=0.24 Score=31.71 Aligned_cols=30 Identities=13% Similarity=0.132 Sum_probs=25.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
||.|+-+.+.+..-...++.|++||+++..
T Consensus 139 yD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 139 YDRIIVTAAAPEVPEALLDQLKPGGRLVIP 168 (209)
T ss_pred cCEEEEeeccCCCCHHHHHhcccCCEEEEE
Confidence 688988877777668899999999998865
No 140
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=90.97 E-value=0.33 Score=29.34 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=28.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|+|+||+|.-.+.+.+-..+..|.+=|+++.+..
T Consensus 88 vDiVie~tG~f~~~~~~~~hl~~GakkViisap~~ 122 (149)
T smart00846 88 VDIVVECTGKFTTREKASAHLKAGAKKVIISAPAK 122 (149)
T ss_pred CeEEEeccccccchHHHHHHHHcCCCEEEeCCCCC
Confidence 59999999875556667788888888888887754
No 141
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=89.10 E-value=0.96 Score=25.78 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=20.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
.|+++||++.....+...++|+.|=.++..
T Consensus 60 ~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~ 89 (117)
T PF03447_consen 60 IDVVVECTSSEAVAEYYEKALERGKHVVTA 89 (117)
T ss_dssp -SEEEE-SSCHHHHHHHHHHHHTTCEEEES
T ss_pred CCEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence 489999987766656577777877776665
No 142
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.78 E-value=0.75 Score=29.28 Aligned_cols=30 Identities=13% Similarity=0.000 Sum_probs=23.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
||+|+-...........++.|++||+++..
T Consensus 146 fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 146 YDRIYVTAAGPDIPKPLIEQLKDGGIMVIP 175 (212)
T ss_pred cCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence 688775444556667889999999998875
No 143
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=88.75 E-value=1.1 Score=27.75 Aligned_cols=21 Identities=19% Similarity=0.237 Sum_probs=17.6
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.++|++||+++....
T Consensus 127 ~~l~~~~~~LkpgG~lvi~~~ 147 (188)
T TIGR00438 127 LALDIAKEVLKPKGNFVVKVF 147 (188)
T ss_pred HHHHHHHHHccCCCEEEEEEc
Confidence 467888999999999998653
No 144
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=88.40 E-value=0.031 Score=40.65 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=32.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCF 55 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~ 55 (112)
||++|+++|........+.....+|.+..+++.......+ .....+++.+.|..
T Consensus 223 ~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~-~~~~gk~v~ViGgg 276 (564)
T PRK12771 223 FDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGE-PPFLGKRVVVIGGG 276 (564)
T ss_pred CCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccC-CcCCCCCEEEECCh
Confidence 6899999998765555566666677666655432211111 23445677777643
No 145
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=88.14 E-value=1 Score=30.75 Aligned_cols=30 Identities=13% Similarity=0.241 Sum_probs=25.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|+|+.+.|........++.|+++|+++..
T Consensus 150 fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 150 YDVIFVTVGVDEVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred ccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence 689998887777677789999999998874
No 146
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=87.77 E-value=1.2 Score=30.76 Aligned_cols=35 Identities=11% Similarity=0.070 Sum_probs=29.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|+||+|+|.-...+.+-..+..|.+.+.++.+.+
T Consensus 96 vDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~ 130 (338)
T PLN02358 96 ADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK 130 (338)
T ss_pred CCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC
Confidence 58999999988778888889999999998886654
No 147
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=87.64 E-value=0.47 Score=34.09 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=30.4
Q ss_pred CcEEEEcccChHHHH-HHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTENCLT-LGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~-~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|+++.++|....+. ..++.+++++.++.+|..+.
T Consensus 310 ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d~ 345 (476)
T PTZ00075 310 ADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFDN 345 (476)
T ss_pred CCEEEECCCcccccCHHHHhccCCCcEEEEcCCCch
Confidence 599999999887775 79999999999999997753
No 148
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=87.52 E-value=0.41 Score=30.58 Aligned_cols=30 Identities=13% Similarity=0.074 Sum_probs=23.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
||.|+-+.+.+..-...++.|++||+++..
T Consensus 142 fD~I~v~~a~~~ip~~l~~qL~~gGrLV~p 171 (209)
T PF01135_consen 142 FDRIIVTAAVPEIPEALLEQLKPGGRLVAP 171 (209)
T ss_dssp EEEEEESSBBSS--HHHHHTEEEEEEEEEE
T ss_pred cCEEEEeeccchHHHHHHHhcCCCcEEEEE
Confidence 588888777776667899999999999974
No 149
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=87.30 E-value=1.7 Score=27.81 Aligned_cols=64 Identities=16% Similarity=0.051 Sum_probs=39.9
Q ss_pred HHHHHHhhccCCcEEEEEecCC--CccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCc
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVR 76 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~--~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~ 76 (112)
.+..+-+.|+++|.++++|-+. +..+-+...-+...+.-+.....-++++++.++..+..+...
T Consensus 123 lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~ 188 (204)
T PF06080_consen 123 LFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELE 188 (204)
T ss_pred HHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccC
Confidence 5677888999999999999544 333334333332222222221122788888888888776654
No 150
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=85.33 E-value=1.5 Score=30.08 Aligned_cols=34 Identities=12% Similarity=0.031 Sum_probs=28.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+||||+|.-.+-+.+-..+..|.+.|.++.+.
T Consensus 91 vDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~ 124 (327)
T TIGR01534 91 VDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPS 124 (327)
T ss_pred CCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCC
Confidence 6999999998776777888899999999998764
No 151
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=85.24 E-value=1.6 Score=30.72 Aligned_cols=35 Identities=14% Similarity=0.040 Sum_probs=29.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|+||||+|.-..-+.+-..+..|.+.|.++.+.+
T Consensus 151 vDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~~ 185 (395)
T PLN03096 151 IDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGK 185 (395)
T ss_pred CCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCCC
Confidence 69999999987777888889999999999987643
No 152
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=85.18 E-value=1.4 Score=27.98 Aligned_cols=30 Identities=17% Similarity=0.034 Sum_probs=22.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
||+|+-..+.+.......+.|++||+++..
T Consensus 147 fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 147 YDRIYVTAAGPKIPEALIDQLKEGGILVMP 176 (215)
T ss_pred CCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence 577775444455566788999999998865
No 153
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=85.15 E-value=1.4 Score=30.23 Aligned_cols=35 Identities=9% Similarity=-0.027 Sum_probs=29.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|+||+|+|.-..-+.+-..++.|.+.|.++.+.+
T Consensus 90 vDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~~ 124 (331)
T PRK15425 90 VDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK 124 (331)
T ss_pred CCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCCC
Confidence 68999999987677778888999999999987654
No 154
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=85.02 E-value=1.8 Score=27.40 Aligned_cols=30 Identities=13% Similarity=0.099 Sum_probs=22.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
||+|+-+.+........++.|++||+++..
T Consensus 143 fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 143 FDAIIVTAAASTIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence 577775544455556788999999999764
No 155
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=84.89 E-value=2.2 Score=26.70 Aligned_cols=30 Identities=13% Similarity=0.269 Sum_probs=20.3
Q ss_pred CcEEEEcccC---hHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGT---ENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~---~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|.|+...+. ...+..+.+.|+++|+++..
T Consensus 112 ~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 112 FDRIFIGGGSEKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence 5777764432 34577778888888888753
No 156
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=84.75 E-value=3.6 Score=26.84 Aligned_cols=35 Identities=17% Similarity=0.191 Sum_probs=24.5
Q ss_pred CcEEEEcccCh---HHHHHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTE---NCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~---~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
||+|+-..... ..+..+.+.|++||+++..|....
T Consensus 180 fD~Vvani~~~~~~~l~~~~~~~LkpgG~lilsgi~~~ 217 (250)
T PRK00517 180 ADVIVANILANPLLELAPDLARLLKPGGRLILSGILEE 217 (250)
T ss_pred cCEEEEcCcHHHHHHHHHHHHHhcCCCcEEEEEECcHh
Confidence 57777544322 345678889999999999886543
No 157
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=84.62 E-value=1.9 Score=29.75 Aligned_cols=34 Identities=21% Similarity=0.114 Sum_probs=28.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+||+|+|....-+.+-..+..|.+.|.++.+.
T Consensus 92 vDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap~ 125 (336)
T PRK13535 92 VDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHPG 125 (336)
T ss_pred CCEEEEccchhhhHHHHHHHHHcCCEEEEecCCc
Confidence 6999999998777777888889888999888664
No 158
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=84.13 E-value=3.6 Score=28.33 Aligned_cols=70 Identities=13% Similarity=0.046 Sum_probs=43.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEEecCCCc----cccChhhhhhc-CeeEEeEecc-CCCHHHHHHHHHc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVGMGPQM----VSVPLVNACAK-EIDILSCFRY-VNDYPDALEMVAS 70 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g~~~~~----~~~~~~~~~~~-~~~l~g~~~~-~~~~~~~~~~~~~ 70 (112)
+|+|+||+|.-..-+.+-+.+..+ .+-|+++.+... +.+....-... +.++.....+ +..+..+++.+.+
T Consensus 90 vdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap~~kvl~d 166 (335)
T COG0057 90 VDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLND 166 (335)
T ss_pred ccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhHHHHHHHHH
Confidence 489999999766667777778774 788888877643 22233222222 5555555433 3666666666654
No 159
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=83.95 E-value=2.2 Score=29.47 Aligned_cols=34 Identities=15% Similarity=0.174 Sum_probs=28.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+||+|+|.-.+...+-..+..|.+.|.++.+.
T Consensus 90 vDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~ 123 (343)
T PRK07729 90 IDIVIEATGKFNSKEKAILHVEAGAKKVILTAPG 123 (343)
T ss_pred CCEEEEccchhhhHhHHHHHHHcCCeEEEeCCCC
Confidence 6999999998777777888888888999888653
No 160
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=83.90 E-value=1.9 Score=29.72 Aligned_cols=34 Identities=15% Similarity=0.045 Sum_probs=29.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+||+|+|.......+-..+..|.+.|.++.+.
T Consensus 89 vDiVle~tG~~~s~~~a~~hl~aGak~V~iSap~ 122 (334)
T PRK08955 89 CDVVIEASGVMKTKALLQAYLDQGVKRVVVTAPV 122 (334)
T ss_pred CCEEEEccchhhcHHHHHHHHHCCCEEEEECCCC
Confidence 6999999998777788888899999999988763
No 161
>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=83.65 E-value=2 Score=29.60 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=29.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|+||+|+|....-+.+-..++.|.+.|.++.+.+
T Consensus 91 vDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~~ 125 (337)
T PTZ00023 91 VDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPPK 125 (337)
T ss_pred CCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCCC
Confidence 69999999987777778888889999999887543
No 162
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=83.16 E-value=2.3 Score=29.38 Aligned_cols=34 Identities=15% Similarity=0.104 Sum_probs=28.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+||+|+|.-...+.+-..+..|.+.|.++.+.
T Consensus 91 vDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap~ 124 (337)
T PRK07403 91 IDLIIESTGVFVTKEGASKHIQAGAKKVLITAPG 124 (337)
T ss_pred CCEEEeccchhhhHHHHHHHhhCCcEEEEeCCCC
Confidence 6999999998777777888888888988888653
No 163
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=82.96 E-value=2.6 Score=26.64 Aligned_cols=31 Identities=16% Similarity=0.008 Sum_probs=22.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
||+|+-............+.|++||+++..-
T Consensus 145 fD~I~~~~~~~~~~~~l~~~L~~gG~lv~~~ 175 (212)
T PRK00312 145 FDRILVTAAAPEIPRALLEQLKEGGILVAPV 175 (212)
T ss_pred cCEEEEccCchhhhHHHHHhcCCCcEEEEEE
Confidence 5777754444555677889999999988653
No 164
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=82.84 E-value=1.4 Score=26.45 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=19.0
Q ss_pred HHHHHHHhhccCCcEEEEEecCCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
.++.++++.|++||.++++-+++.
T Consensus 73 ~Al~~al~lL~~gG~i~iv~Y~GH 96 (140)
T PF06962_consen 73 KALEAALELLKPGGIITIVVYPGH 96 (140)
T ss_dssp HHHHHHHHHEEEEEEEEEEE--ST
T ss_pred HHHHHHHHhhccCCEEEEEEeCCC
Confidence 368899999999999999987654
No 165
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=82.81 E-value=3 Score=26.33 Aligned_cols=35 Identities=20% Similarity=0.126 Sum_probs=25.8
Q ss_pred CcEEEEcccC--hHHHHHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGT--ENCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~--~~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|.+|---|. +..++.+++.|+++||+|.-...-+
T Consensus 103 ~daiFIGGg~~i~~ile~~~~~l~~ggrlV~naitlE 139 (187)
T COG2242 103 PDAIFIGGGGNIEEILEAAWERLKPGGRLVANAITLE 139 (187)
T ss_pred CCEEEECCCCCHHHHHHHHHHHcCcCCeEEEEeecHH
Confidence 4677754332 3578999999999999998875444
No 166
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=82.66 E-value=2.8 Score=26.83 Aligned_cols=34 Identities=9% Similarity=0.095 Sum_probs=24.7
Q ss_pred CcEEEEcccC--------hHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGT--------ENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~--------~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
||.++|+..- ...+....++|+|||+++.++...
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~ 155 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDY 155 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEc
Confidence 5788886521 234678889999999988887543
No 167
>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional
Probab=82.57 E-value=1.6 Score=30.35 Aligned_cols=35 Identities=11% Similarity=0.041 Sum_probs=29.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
+|+|+||+|.-.+...+..-|..|.+=|+++.|.+
T Consensus 105 vD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~ 139 (361)
T PTZ00434 105 VDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPAS 139 (361)
T ss_pred CCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCC
Confidence 69999999987777888889988888888876643
No 168
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=82.30 E-value=3.1 Score=29.76 Aligned_cols=34 Identities=9% Similarity=0.002 Sum_probs=29.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+||||+|.-.....+-..+..|.+.|.++.+.
T Consensus 166 VDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~ 199 (442)
T PLN02237 166 IDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA 199 (442)
T ss_pred CCEEEEccChhhhHHHHHHHHhCCCEEEEECCCC
Confidence 6899999998777788888999999999998653
No 169
>PRK00536 speE spermidine synthase; Provisional
Probab=82.23 E-value=2.8 Score=27.88 Aligned_cols=32 Identities=13% Similarity=-0.064 Sum_probs=25.2
Q ss_pred CcEEE-EcccChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYL-DPLGTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~-d~~g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
||+|| |++-.++-...+-++|+++|.++.-+.
T Consensus 140 fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~ 172 (262)
T PRK00536 140 YDLIICLQEPDIHKIDGLKRMLKEDGVFISVAK 172 (262)
T ss_pred CCEEEEcCCCChHHHHHHHHhcCCCcEEEECCC
Confidence 57666 666666667888999999999998764
No 170
>KOG1661|consensus
Probab=82.03 E-value=2.1 Score=27.67 Aligned_cols=31 Identities=13% Similarity=0.023 Sum_probs=25.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
||.|.--++.+...+..++.|+++|++++.=
T Consensus 163 YDaIhvGAaa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 163 YDAIHVGAAASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred cceEEEccCccccHHHHHHhhccCCeEEEee
Confidence 5778877777788889999999999988663
No 171
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=81.80 E-value=5.5 Score=27.48 Aligned_cols=68 Identities=15% Similarity=0.046 Sum_probs=42.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcc---ccC----hhhhhhcCeeEEeEe-ccCCCHHHHHHHHHc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMV---SVP----LVNACAKEIDILSCF-RYVNDYPDALEMVAS 70 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~---~~~----~~~~~~~~~~l~g~~-~~~~~~~~~~~~~~~ 70 (112)
+|+|++|+|.......+-..++.+-+-+++|.+.... .|. ......+. +.... |++..+..+++.+.+
T Consensus 76 vDiVve~Tp~~~~~~na~~~~~~GakaVl~~~p~~~~~~~tfv~gvN~~~~~~~~--~vs~aSCtTn~Lap~~~~L~~ 151 (333)
T TIGR01546 76 VDIVVDATPGGIGAKNKPLYEKAGVKAIFQGGEKAEVADVSFVAQANYEAALGKD--YVRVVSCNTTGLVRTLNAIND 151 (333)
T ss_pred CCEEEECCCCCCChhhHHHHHhCCcCEEEECCCCCCCCCceEEeeeCHHHcCcCc--eEEecCchHhhHHHHHHHHHH
Confidence 5999999988766666667777777778888766432 232 22333333 33333 334667777776665
No 172
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=81.55 E-value=9.1 Score=23.04 Aligned_cols=68 Identities=10% Similarity=0.094 Sum_probs=44.0
Q ss_pred CcEEEEccc--ChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcCC
Q psy12355 1 MMLYLDPLG--TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGK 72 (112)
Q Consensus 1 ~D~v~d~~g--~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~ 72 (112)
+|+++-+.. .+.++...++..+++..++++|-. .++.+..+...+++..+... ..+.+.+++.+.+|.
T Consensus 63 aD~viiTGsTlvN~Ti~~iL~~~~~~~~vil~GpS---~~~~P~~l~~~Gv~~v~g~~-v~d~~~~~~~i~~Gg 132 (147)
T PF04016_consen 63 ADVVIITGSTLVNGTIDDILELARNAREVILYGPS---APLHPEALFDYGVTYVGGSR-VVDPEKVLRAISEGG 132 (147)
T ss_dssp -SEEEEECHHCCTTTHHHHHHHTTTSSEEEEESCC---GGS-GGGGCCTT-SEEEEEE-ES-HHHHHHHHCTTS
T ss_pred CCEEEEEeeeeecCCHHHHHHhCccCCeEEEEecC---chhhHHHHHhCCCCEEEEEE-EeCHHHHHHHHHcCC
Confidence 467775321 235789999999988888888742 33334456667887766553 567788888888874
No 173
>PRK14967 putative methyltransferase; Provisional
Probab=79.95 E-value=13 Score=23.73 Aligned_cols=17 Identities=29% Similarity=0.395 Sum_probs=13.8
Q ss_pred HHHHHhhccCCcEEEEE
Q psy12355 14 LTLGINVTKMGGKLMLV 30 (112)
Q Consensus 14 ~~~~~~~l~~~G~iv~~ 30 (112)
+..+.+.|+++|+++.+
T Consensus 142 l~~a~~~Lk~gG~l~~~ 158 (223)
T PRK14967 142 CDAAPALLAPGGSLLLV 158 (223)
T ss_pred HHHHHHhcCCCcEEEEE
Confidence 45678899999998865
No 174
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=79.76 E-value=2.7 Score=28.64 Aligned_cols=23 Identities=22% Similarity=0.522 Sum_probs=20.1
Q ss_pred HHHHHHHhhccCCcEEEEEecCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
..+.++.+.|+++||++++..+.
T Consensus 225 ~~L~~a~~~L~~gGRl~VIsFHS 247 (314)
T COG0275 225 EALEAALDLLKPGGRLAVISFHS 247 (314)
T ss_pred HHHHHHHHhhCCCcEEEEEEecc
Confidence 46889999999999999998755
No 175
>PRK08618 ornithine cyclodeaminase; Validated
Probab=79.61 E-value=2.8 Score=28.57 Aligned_cols=39 Identities=15% Similarity=0.094 Sum_probs=30.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccCh
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPL 41 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~ 41 (112)
+|+|+.|+++...+- . +++++|-.+..+|.+.. ..+++.
T Consensus 193 aDiVi~aT~s~~p~i-~-~~l~~G~hV~~iGs~~p~~~E~~~ 232 (325)
T PRK08618 193 ADIIVTVTNAKTPVF-S-EKLKKGVHINAVGSFMPDMQELPS 232 (325)
T ss_pred CCEEEEccCCCCcch-H-HhcCCCcEEEecCCCCcccccCCH
Confidence 599999998876544 3 89999999999997653 455555
No 176
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=78.53 E-value=2.7 Score=24.40 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=22.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++|++ .++.....++.+.+.|.-+.+|..+
T Consensus 68 ~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTTG 100 (124)
T PF01113_consen 68 ADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTTG 100 (124)
T ss_dssp -SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred CCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECCC
Confidence 58999998 7777777777777778888887544
No 177
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=77.82 E-value=3.3 Score=28.20 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.0
Q ss_pred HHHHHHHhhccCCcEEEEEecCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
..+.++.++|++|||++++..+.
T Consensus 221 ~~L~~~~~~L~~gGrl~VISfHS 243 (305)
T TIGR00006 221 EALQFAPNLLAPGGRLSIISFHS 243 (305)
T ss_pred HHHHHHHHHhcCCCEEEEEecCc
Confidence 35788999999999999998765
No 178
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=76.58 E-value=5.9 Score=24.84 Aligned_cols=31 Identities=13% Similarity=0.288 Sum_probs=22.1
Q ss_pred CcEEEEc-cc-ChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDP-LG-TENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~-~g-~~~~~~~~~~~l~~~G~iv~~g 31 (112)
||+|+-. .+ .+..+..+.++|++||+++.+-
T Consensus 113 fDlV~~~~~~~~~~~l~~~~~~LkpGG~lv~~~ 145 (187)
T PRK00107 113 FDVVTSRAVASLSDLVELCLPLLKPGGRFLALK 145 (187)
T ss_pred ccEEEEccccCHHHHHHHHHHhcCCCeEEEEEe
Confidence 5667642 22 2356778899999999999883
No 179
>KOG1540|consensus
Probab=76.34 E-value=3.4 Score=27.61 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=22.0
Q ss_pred cccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 7 PLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 7 ~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
|+-..-++..|.+.|+||||+.++-.+.
T Consensus 190 ~th~~k~l~EAYRVLKpGGrf~cLeFsk 217 (296)
T KOG1540|consen 190 VTHIQKALREAYRVLKPGGRFSCLEFSK 217 (296)
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEEEccc
Confidence 3433457999999999999999887654
No 180
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=75.79 E-value=14 Score=25.86 Aligned_cols=34 Identities=12% Similarity=0.062 Sum_probs=25.7
Q ss_pred CcEEEEcccC-----hH-HHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGT-----EN-CLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~-----~~-~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|++++|++. +. .....++.+++++.++.++...
T Consensus 231 aDvVI~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~ 270 (370)
T TIGR00518 231 ADLLIGAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQ 270 (370)
T ss_pred CCEEEEccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCC
Confidence 5999999832 11 1367888899999999998654
No 181
>PF10369 ALS_ss_C: Small subunit of acetolactate synthase; InterPro: IPR019455 This entry represents the C-terminal domain of the small subunit of acetolactate synthase (the N-terminal domain being an ACT domain). Acetolactate synthase is a tetrameric enzyme, composed of two large and two small subunits, which catalyses the first step in branched-chain amino acid biosynthesis. This reaction is sensitive to certain herbicides []. ; PDB: 2F1F_B 2FGC_A 2PC6_A.
Probab=75.41 E-value=6.6 Score=20.77 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=22.4
Q ss_pred EEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 3 LYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 3 ~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
++++++|.+.-+...++.+++.|.+-..
T Consensus 38 ~iie~tG~~~kid~fi~~l~~~gi~Ei~ 65 (75)
T PF10369_consen 38 IIIELTGTPEKIDAFIKLLKPFGILEIA 65 (75)
T ss_dssp EEEEEEE-HHHHHHHHHHSTGGGEEEEE
T ss_pred EEEEEcCCHHHHHHHHHHhhhcCCEEEE
Confidence 5789999999999999999998865443
No 182
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=74.17 E-value=3.2 Score=27.00 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=18.9
Q ss_pred HHHHHHHhhccCCcEEEEEecCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
.++....+.|+|||+++++-...
T Consensus 134 ~~l~E~~RVLkPGG~l~ile~~~ 156 (233)
T PF01209_consen 134 RALREMYRVLKPGGRLVILEFSK 156 (233)
T ss_dssp HHHHHHHHHEEEEEEEEEEEEEB
T ss_pred HHHHHHHHHcCCCeEEEEeeccC
Confidence 36888999999999999886543
No 183
>PRK04266 fibrillarin; Provisional
Probab=73.94 E-value=7.9 Score=25.08 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=20.8
Q ss_pred CcEEEEcccChH----HHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTEN----CLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~----~~~~~~~~l~~~G~iv~~ 30 (112)
+|+++--...+. .+..+.+.|++||++++.
T Consensus 142 ~D~i~~d~~~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 142 VDVIYQDVAQPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 577773332322 367788899999999985
No 184
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=73.69 E-value=6.8 Score=26.23 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=23.1
Q ss_pred CcEEEEcccCh---HHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTE---NCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~---~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
||+|+-..... ..+..+.+.|++||+++..|...
T Consensus 226 fDlVvan~~~~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 226 ADVIVANILAEVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred ceEEEEecCHHHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 46776433222 34566788999999999887644
No 185
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=73.60 E-value=5.1 Score=26.53 Aligned_cols=30 Identities=13% Similarity=0.075 Sum_probs=24.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|+|+||++.....+.+.++|+.|-.++..
T Consensus 62 ~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~ 91 (265)
T PRK13303 62 PDLVVECAGHAALKEHVVPILKAGIDCAVI 91 (265)
T ss_pred CCEEEECCCHHHHHHHHHHHHHcCCCEEEe
Confidence 589999998877778888899887777654
No 186
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=72.78 E-value=6.5 Score=27.11 Aligned_cols=32 Identities=16% Similarity=-0.022 Sum_probs=23.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+|+||+|.......+-.+++.|-+++.-|.
T Consensus 79 vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~~ 110 (341)
T PRK04207 79 ADIVVDATPGGVGAKNKELYEKAGVKAIFQGG 110 (341)
T ss_pred CCEEEECCCchhhHHHHHHHHHCCCEEEEcCC
Confidence 59999999887777777777777655555543
No 187
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=72.71 E-value=10 Score=24.88 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=20.6
Q ss_pred HHHHHHHhhccCCcEEEEEecCCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
.++..+.+.|+|||+++++-....
T Consensus 137 ~aL~E~~RVlKpgG~~~vle~~~p 160 (238)
T COG2226 137 KALKEMYRVLKPGGRLLVLEFSKP 160 (238)
T ss_pred HHHHHHHHhhcCCeEEEEEEcCCC
Confidence 478899999999999999986654
No 188
>KOG4300|consensus
Probab=72.35 E-value=5.7 Score=25.84 Aligned_cols=20 Identities=15% Similarity=0.316 Sum_probs=16.7
Q ss_pred HHHHHHhhccCCcEEEEEec
Q psy12355 13 CLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~ 32 (112)
+++..-++|||||+++.+--
T Consensus 164 ~L~e~~rlLRpgG~iifiEH 183 (252)
T KOG4300|consen 164 QLNEVRRLLRPGGRIIFIEH 183 (252)
T ss_pred HHHHHHHhcCCCcEEEEEec
Confidence 56777789999999999853
No 189
>PF11017 DUF2855: Protein of unknown function (DUF2855); InterPro: IPR021276 This family of proteins has no known function.
Probab=71.48 E-value=7.9 Score=26.55 Aligned_cols=97 Identities=14% Similarity=0.022 Sum_probs=53.7
Q ss_pred EEEEcccChHHHHHHHhhccCCc-EEEEEecCCC-ccc------------cChhhhhhcCeeEEeEeccCCCHHHHHHHH
Q psy12355 3 LYLDPLGTENCLTLGINVTKMGG-KLMLVGMGPQ-MVS------------VPLVNACAKEIDILSCFRYVNDYPDALEMV 68 (112)
Q Consensus 3 ~v~d~~g~~~~~~~~~~~l~~~G-~iv~~g~~~~-~~~------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~ 68 (112)
+++|.+|+..+.....+.++..= ..+.+|.... +.. |.....+.|.+.--|.-.+.+.+.+.++-+
T Consensus 202 v~VDfaG~~~~~~~Lh~~l~d~l~~~~~VG~th~~~~~~~~~l~g~~~~~FFAp~~~~kr~~~~G~~~~~~r~~~aw~~f 281 (314)
T PF11017_consen 202 VIVDFAGNGEVLAALHEHLGDNLVYSCLVGATHWDKVEAPADLPGPRPEFFFAPDQIDKRIKEWGAAEFFQRMAAAWKRF 281 (314)
T ss_pred EEEECCCCHHHHHHHHHHHhhhhhEEEEEEccCccccCccccCCCCCcEEEeChHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 68899999988888887777653 3566775432 211 111122233333233222222333333333
Q ss_pred HcCCCCCccceeeeeCcccHHHHHHHHhcCCC
Q psy12355 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKAD 100 (112)
Q Consensus 69 ~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~ 100 (112)
.+...+.- -+.+.--++.+.++++.+.+|+.
T Consensus 282 ~~~~~~wl-~~~~~~G~ea~~~~y~~l~~G~v 312 (314)
T PF11017_consen 282 AADAQPWL-KVEEVAGPEAVEAAYQDLLAGKV 312 (314)
T ss_pred HHhhcCcE-EEEEecCHHHHHHHHHHHhcCCC
Confidence 33322222 23456789999999999998874
No 190
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=71.42 E-value=8 Score=25.99 Aligned_cols=39 Identities=3% Similarity=-0.044 Sum_probs=27.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCcccc
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSV 39 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~ 39 (112)
+|+|++|++..-.-...++.++++..++.++..+....+
T Consensus 210 aDiVint~P~~ii~~~~l~~~k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 210 IDIVINTIPALVLTADVLSKLPKHAVIIDLASKPGGTDF 248 (287)
T ss_pred CCEEEECCChHHhCHHHHhcCCCCeEEEEeCcCCCCCCH
Confidence 589999986543334567788888888888865554444
No 191
>PRK11579 putative oxidoreductase; Provisional
Probab=70.92 E-value=31 Score=23.64 Aligned_cols=69 Identities=16% Similarity=0.195 Sum_probs=44.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhh---h----hhcCeeEEeEec--cCCCHHHHHHHHHcC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVN---A----CAKEIDILSCFR--YVNDYPDALEMVASG 71 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~---~----~~~~~~l~g~~~--~~~~~~~~~~~~~~g 71 (112)
+|+|+.|++.......+..++..| +-|++ .+++..+..+ + -.++..+.-.+. +...++.+-+++.+|
T Consensus 65 vD~V~I~tp~~~H~~~~~~al~aG-khVl~---EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~~~~k~~i~~g 140 (346)
T PRK11579 65 IDLIVIPTPNDTHFPLAKAALEAG-KHVVV---DKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDFLTLKALLAEG 140 (346)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHCC-CeEEE---eCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHHHHHHHHHhcC
Confidence 589999999888888888888775 44444 4444443321 2 223444433332 346788888899998
Q ss_pred CC
Q psy12355 72 KC 73 (112)
Q Consensus 72 ~~ 73 (112)
.+
T Consensus 141 ~i 142 (346)
T PRK11579 141 VL 142 (346)
T ss_pred CC
Confidence 76
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=70.59 E-value=6.4 Score=26.70 Aligned_cols=23 Identities=22% Similarity=0.514 Sum_probs=19.8
Q ss_pred HHHHHHHhhccCCcEEEEEecCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
..+.++.++|++||+++++.++.
T Consensus 217 ~~L~~~~~~L~~gGrl~visfHS 239 (296)
T PRK00050 217 RALEAALDLLKPGGRLAVISFHS 239 (296)
T ss_pred HHHHHHHHHhcCCCEEEEEecCc
Confidence 35788899999999999998765
No 193
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=70.22 E-value=3.3 Score=25.50 Aligned_cols=38 Identities=13% Similarity=0.154 Sum_probs=25.3
Q ss_pred CcEEEEcccChHHH-HHHHhhccCCcEEEEEecCCCccc
Q psy12355 1 MMLYLDPLGTENCL-TLGINVTKMGGKLMLVGMGPQMVS 38 (112)
Q Consensus 1 ~D~v~d~~g~~~~~-~~~~~~l~~~G~iv~~g~~~~~~~ 38 (112)
+|+++.++|....+ ..-++.++++..+..+|..+.++.
T Consensus 79 adi~vtaTG~~~vi~~e~~~~mkdgail~n~Gh~d~Eid 117 (162)
T PF00670_consen 79 ADIFVTATGNKDVITGEHFRQMKDGAILANAGHFDVEID 117 (162)
T ss_dssp -SEEEE-SSSSSSB-HHHHHHS-TTEEEEESSSSTTSBT
T ss_pred CCEEEECCCCccccCHHHHHHhcCCeEEeccCcCceeEe
Confidence 48888888887643 467888888888888876554443
No 194
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=70.21 E-value=11 Score=21.44 Aligned_cols=32 Identities=13% Similarity=0.025 Sum_probs=22.1
Q ss_pred CcEEEEcccChHHHH---HHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENCLT---LGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~---~~~~~l~~~G~iv~~g~ 32 (112)
+|++|-|++...... .....+++|..++..+.
T Consensus 66 ~DvV~~~~~~~~~~~~~~~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 66 VDIVFLALPHGVSKEIAPLLPKAAEAGVKVIDLSS 100 (122)
T ss_pred CCEEEEcCCcHHHHHHHHHHHhhhcCCCEEEECCc
Confidence 588999998766544 24455677777777764
No 195
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=68.63 E-value=5.1 Score=27.37 Aligned_cols=23 Identities=22% Similarity=0.433 Sum_probs=19.7
Q ss_pred HHHHHHHhhccCCcEEEEEecCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
..+..+.++|++|||++++..+.
T Consensus 222 ~~L~~a~~~L~~gGrl~VISFHS 244 (310)
T PF01795_consen 222 RGLEAAPDLLKPGGRLVVISFHS 244 (310)
T ss_dssp HHHHHHHHHEEEEEEEEEEESSH
T ss_pred HHHHHHHHHhcCCcEEEEEEecc
Confidence 35788999999999999998755
No 196
>PF08351 DUF1726: Domain of unknown function (DUF1726); InterPro: IPR013562 This entry represents a protein of unknown function and is found towards the N terminus of putative ATPases (IPR007807 from INTERPRO). ; PDB: 2ZPA_B.
Probab=68.30 E-value=15 Score=20.24 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=20.8
Q ss_pred EEEEccc--ChHHHHHHHhhccCCcEEEEEec
Q psy12355 3 LYLDPLG--TENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 3 ~v~d~~g--~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+|+.. .++.+..+...++-||-++.+--
T Consensus 15 ~i~d~~~g~~pnal~a~~gtv~gGGllill~p 46 (92)
T PF08351_consen 15 LIFDAFEGFDPNALAALAGTVRGGGLLILLLP 46 (92)
T ss_dssp EEEE-SS---HHHHHHHHTTB-TT-EEEEEES
T ss_pred EEEEccCCCCHHHHHHHhcceecCeEEEEEcC
Confidence 5677764 36788999999999999998853
No 197
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=68.08 E-value=6.9 Score=25.83 Aligned_cols=30 Identities=17% Similarity=0.057 Sum_probs=22.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+|+..- .+..+....+.|++||+++.+.
T Consensus 152 fD~I~~~~-~~~~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 152 LDAIIRIY-APCKAEELARVVKPGGIVITVT 181 (272)
T ss_pred eeEEEEec-CCCCHHHHHhhccCCCEEEEEe
Confidence 46777533 4555788899999999999885
No 198
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=67.95 E-value=8.3 Score=27.55 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=25.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+||+|+|.-...+.+...++.|.+=+++..+.
T Consensus 175 VDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~ 208 (421)
T PLN02272 175 AEYVVESSGVFTTVEKASAHLKGGAKKVVISAPS 208 (421)
T ss_pred CCEEEEcCchhccHHHHHHHhhCCCCEEEECCCC
Confidence 5899999998666777778888777555555443
No 199
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=67.69 E-value=13 Score=23.21 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=15.7
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
..+..+.+.|++||.++.+.
T Consensus 114 ~~l~~~~~~LkpgG~lli~~ 133 (195)
T TIGR00477 114 EIIANMQAHTRPGGYNLIVA 133 (195)
T ss_pred HHHHHHHHHhCCCcEEEEEE
Confidence 46778888999999966554
No 200
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=65.98 E-value=11 Score=25.29 Aligned_cols=31 Identities=10% Similarity=0.134 Sum_probs=25.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
.|+|+||.+.....+.+.+.|+.|-.++..+
T Consensus 63 ~DlVVE~A~~~av~e~~~~iL~~g~dlvv~S 93 (267)
T PRK13301 63 PDLVVEAAGQQAIAEHAEGCLTAGLDMIICS 93 (267)
T ss_pred CCEEEECCCHHHHHHHHHHHHhcCCCEEEEC
Confidence 5899999987777777888998888877775
No 201
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=65.81 E-value=12 Score=23.08 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=20.5
Q ss_pred CcEEEEccc---ChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLG---TENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g---~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+|+.... ....+..+.+.|+++|+++...
T Consensus 98 ~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 98 ADAIFIGGSGGNLTAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred CCEEEECCCccCHHHHHHHHHHhcCCCeEEEEEE
Confidence 577774321 1235677888999999987653
No 202
>PRK10206 putative oxidoreductase; Provisional
Probab=65.57 E-value=41 Score=23.15 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=44.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhh------h-hhcCeeEEeEec--cCCCHHHHHHHHHcC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVN------A-CAKEIDILSCFR--YVNDYPDALEMVASG 71 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~------~-~~~~~~l~g~~~--~~~~~~~~~~~~~~g 71 (112)
+|+|+.|++.....+.+.+++..| +-|++ .+++..+..+ + -.++..+..... +...+..+-+++.+|
T Consensus 65 iD~V~I~tp~~~H~~~~~~al~aG-khVl~---EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~~~~k~li~~g 140 (344)
T PRK10206 65 VKLVVVCTHADSHFEYAKRALEAG-KNVLV---EKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCFLTAKKAIESG 140 (344)
T ss_pred CCEEEEeCCchHHHHHHHHHHHcC-CcEEE---ecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHHHHHHHHHHcC
Confidence 589999998888788888888776 44444 4444444322 1 234444443332 346678888888898
Q ss_pred CC
Q psy12355 72 KC 73 (112)
Q Consensus 72 ~~ 73 (112)
.+
T Consensus 141 ~i 142 (344)
T PRK10206 141 KL 142 (344)
T ss_pred CC
Confidence 76
No 203
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=65.42 E-value=11 Score=24.00 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=16.9
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.+.|++||+++..-.
T Consensus 132 ~~l~~~~~~Lk~gG~l~~~~~ 152 (231)
T TIGR02752 132 QVLREMYRVVKPGGKVVCLET 152 (231)
T ss_pred HHHHHHHHHcCcCeEEEEEEC
Confidence 357778899999999987643
No 204
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=65.04 E-value=9.5 Score=24.53 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=21.3
Q ss_pred CcEEEEccc--------ChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLG--------TENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g--------~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|.|+|.+- ....+....++|+|||++.+++
T Consensus 117 fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 117 VDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred eeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 477787542 1234777888999999866654
No 205
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=64.72 E-value=11 Score=24.48 Aligned_cols=31 Identities=10% Similarity=0.083 Sum_probs=21.3
Q ss_pred CcEEEEcc---cChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPL---GTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~---g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
||+||--. .....+..+++.+++||.++.-.
T Consensus 145 fD~VfiDa~k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 145 FDFAFVDADKPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred CCEEEECCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 57777332 22456788899999999887643
No 206
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=64.54 E-value=15 Score=24.50 Aligned_cols=31 Identities=19% Similarity=0.140 Sum_probs=22.9
Q ss_pred CcEEE-EcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYL-DPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~-d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+++ |.----+.++.+.+.|++||+++.+.
T Consensus 164 vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 164 VDAVFLDLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred cCEEEEcCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 35444 54433357889999999999999995
No 207
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=63.74 E-value=8.5 Score=22.06 Aligned_cols=32 Identities=16% Similarity=0.070 Sum_probs=23.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+||-|++.....+.+-++++.|-+++..+.
T Consensus 67 ~Dvvf~a~~~~~~~~~~~~~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 67 VDVVFLALPHGASKELAPKLLKAGIKVIDLSG 98 (121)
T ss_dssp ESEEEE-SCHHHHHHHHHHHHHTTSEEEESSS
T ss_pred CCEEEecCchhHHHHHHHHHhhCCcEEEeCCH
Confidence 48999999876666666667788888887764
No 208
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=63.49 E-value=9.3 Score=26.52 Aligned_cols=31 Identities=13% Similarity=0.049 Sum_probs=22.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+||||+|.-.+...+..-++.|.+=+.+.
T Consensus 93 vDiVie~TG~f~~~~~a~~hl~~Gakkviis 123 (342)
T PTZ00353 93 VQYVVECTGLYSTRSRCWGHVTGGAKGVFVA 123 (342)
T ss_pred CCEEEEcccccccHhhhhhhhhcCCCcEEEe
Confidence 6999999998766777788777654444443
No 209
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=63.09 E-value=18 Score=22.67 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=20.6
Q ss_pred CcEEEEcccC--------hHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGT--------ENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~--------~~~~~~~~~~l~~~G~iv~~g 31 (112)
||+|+..... ...+....++|++||.++.+.
T Consensus 96 fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 96 YDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 5777754321 245677888999999976554
No 210
>COG0769 MurE UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]
Probab=62.93 E-value=57 Score=23.81 Aligned_cols=97 Identities=15% Similarity=0.150 Sum_probs=55.5
Q ss_pred cEEEEcccChHHHHHHHhhccC--CcEEE-EEecCCC--cccc-ChhhhhhcC--eeEEeEeccC-CCHHHHHHHHHcCC
Q psy12355 2 MLYLDPLGTENCLTLGINVTKM--GGKLM-LVGMGPQ--MVSV-PLVNACAKE--IDILSCFRYV-NDYPDALEMVASGK 72 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~~--~G~iv-~~g~~~~--~~~~-~~~~~~~~~--~~l~g~~~~~-~~~~~~~~~~~~g~ 72 (112)
.+++|-+=+|..++++++.+++ .|+++ ++|..++ .... ++..+..+. +.+...-..+ ++.+..++-+..|-
T Consensus 334 ~v~VDyAHnPd~le~~L~~~~~~~~g~li~VfG~gGDrD~~kr~~mg~ia~~~ad~vivt~dnpR~edp~~i~~~i~~g~ 413 (475)
T COG0769 334 LVIVDYAHNPDGLEKALRAVRLHAAGRLIVVFGCGGDRDKSKRPDMGAIAEQLADIVIVTSDNPRSEDPAVILADILAGI 413 (475)
T ss_pred eEEEEeccChHHHHHHHHHHHhhcCCcEEEEECccCCCCcccccchHHHHHhcCCcEEEcCCCCCCcCHHHHHHHHHhcc
Confidence 4788888788999999999984 47755 4565443 2222 333333333 3444443333 78888888888885
Q ss_pred CCCccceeeeeCcccHHHHHHHHhcC
Q psy12355 73 CPVRKLITHNFKLEEAVEAFKTASKK 98 (112)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~a~~~~~~~ 98 (112)
..........=.-+.+.+|++.+..+
T Consensus 414 ~~~~~~~~~~dr~~AI~~ai~~a~~~ 439 (475)
T COG0769 414 EAPEKYEIIEDREEAIRKALDLAKEG 439 (475)
T ss_pred CCccceecchhHHHHHHHHHHhhccC
Confidence 54432111001123355666665533
No 211
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=62.86 E-value=64 Score=24.34 Aligned_cols=97 Identities=9% Similarity=0.041 Sum_probs=61.4
Q ss_pred HHHHHHhhccCCcEEEEEecCCCc----cccChh----hhhhcCeeEEeEeccC--CCHHHHHHHHHcC-CCCCccceee
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGPQM----VSVPLV----NACAKEIDILSCFRYV--NDYPDALEMVASG-KCPVRKLITH 81 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~~~----~~~~~~----~~~~~~~~l~g~~~~~--~~~~~~~~~~~~g-~~~~~~~~~~ 81 (112)
.+.+....|.+|-.+..-.++-++ ..+.-. .+-.++..|.|..... .+++++.+++.+- ...+.-+.-+
T Consensus 78 ~i~ql~~~lepG~t~qfN~ifldpylw~~qig~krLv~kara~G~~I~gvvIsAGIP~le~A~ElI~~L~~~G~~yv~fK 157 (717)
T COG4981 78 AIEQLVSLLEPGRTAQFNSIFLDPYLWKLQIGGKRLVQKARASGAPIDGVVISAGIPSLEEAVELIEELGDDGFPYVAFK 157 (717)
T ss_pred HHHHHHhccCCCccceeeEEEechHHhhhcCChHHHHHHHHhcCCCcceEEEecCCCcHHHHHHHHHHHhhcCceeEEec
Confidence 455666677777666555544332 233322 2345666777776544 6788888888763 3333333444
Q ss_pred eeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355 82 NFKLEEAVEAFKTASKKADDTIKIMIHCRQ 111 (112)
Q Consensus 82 ~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~ 111 (112)
.-..+++...++.....+. .++++.++.
T Consensus 158 PGtIeqI~svi~IAka~P~--~pIilq~eg 185 (717)
T COG4981 158 PGTIEQIRSVIRIAKANPT--FPIILQWEG 185 (717)
T ss_pred CCcHHHHHHHHHHHhcCCC--CceEEEEec
Confidence 4568999999999988885 889988754
No 212
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2.1.1.11 from EC). This converts magnesium-protoporphyrin IX to magnesium-protoporphyrin IX metylester using S-adenosyl-L-methionine as a cofactor [].; GO: 0046406 magnesium protoporphyrin IX methyltransferase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process
Probab=62.44 E-value=10 Score=21.35 Aligned_cols=28 Identities=7% Similarity=0.223 Sum_probs=23.9
Q ss_pred eeCcccHHHHHHHHhcCCCCceEEEEeeCC
Q psy12355 82 NFKLEEAVEAFKTASKKADDTIKIMIHCRQ 111 (112)
Q Consensus 82 ~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~ 111 (112)
.||.+|+.++++.+.+... +++++++-+
T Consensus 7 HYp~~d~~~~l~~La~~t~--~~~ifTfAP 34 (97)
T PF07109_consen 7 HYPAEDAAQMLAHLASRTR--GSLIFTFAP 34 (97)
T ss_pred ccCHHHHHHHHHHHHHhcc--CcEEEEECC
Confidence 4999999999999998874 899998744
No 213
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=62.36 E-value=13 Score=24.08 Aligned_cols=31 Identities=16% Similarity=0.196 Sum_probs=22.7
Q ss_pred CcEEE-Eccc--ChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYL-DPLG--TENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~-d~~g--~~~~~~~~~~~l~~~G~iv~~g 31 (112)
||+|| |+.- .+..++.+++.|++||-++.=-
T Consensus 133 fDliFIDadK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 133 FDLVFIDADKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred ccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 57777 4432 3467889999999999988654
No 214
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=61.87 E-value=15 Score=26.13 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.6
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
.+..+.+.|++||+++..-
T Consensus 350 lL~~a~~~LkpgG~lvyst 368 (426)
T TIGR00563 350 ILDAIWPLLKTGGTLVYAT 368 (426)
T ss_pred HHHHHHHhcCCCcEEEEEe
Confidence 5677888999999998664
No 215
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=61.79 E-value=21 Score=21.79 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=14.7
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
.+..+.+.|+++|+++.+.
T Consensus 122 ~l~~~~~~Lk~gG~~~~~~ 140 (179)
T TIGR00537 122 FLDELPEILKEGGRVQLIQ 140 (179)
T ss_pred HHHhHHHhhCCCCEEEEEE
Confidence 3666778899999988775
No 216
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=61.67 E-value=16 Score=22.69 Aligned_cols=30 Identities=20% Similarity=0.285 Sum_probs=19.2
Q ss_pred CcEEEEcc-c-ChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPL-G-TENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~-g-~~~~~~~~~~~l~~~G~iv~~ 30 (112)
||+|+-.. . .+..+..+.+.|+++|+++..
T Consensus 110 fD~I~s~~~~~~~~~~~~~~~~LkpgG~lvi~ 141 (181)
T TIGR00138 110 FDVITSRALASLNVLLELTLNLLKVGGYFLAY 141 (181)
T ss_pred ccEEEehhhhCHHHHHHHHHHhcCCCCEEEEE
Confidence 46665321 1 134566778889999998866
No 217
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=60.96 E-value=16 Score=24.18 Aligned_cols=20 Identities=10% Similarity=0.032 Sum_probs=16.4
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
+.++.+.+.|+++|.++..+
T Consensus 167 ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 167 EFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred HHHHHHHHHhCCCcEEEEcC
Confidence 34677889999999999874
No 218
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=60.04 E-value=16 Score=25.38 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=17.7
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.+.|++||++++++.
T Consensus 196 ~~L~e~~rvLkPGG~LvIi~~ 216 (340)
T PLN02490 196 RGIKEAYRVLKIGGKACLIGP 216 (340)
T ss_pred HHHHHHHHhcCCCcEEEEEEe
Confidence 467889999999999988763
No 219
>PRK04457 spermidine synthase; Provisional
Probab=59.89 E-value=20 Score=23.72 Aligned_cols=20 Identities=10% Similarity=0.047 Sum_probs=16.8
Q ss_pred hHHHHHHHhhccCCcEEEEE
Q psy12355 11 ENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 11 ~~~~~~~~~~l~~~G~iv~~ 30 (112)
.+.++.+.+.|+++|+++..
T Consensus 157 ~efl~~~~~~L~pgGvlvin 176 (262)
T PRK04457 157 QPFFDDCRNALSSDGIFVVN 176 (262)
T ss_pred HHHHHHHHHhcCCCcEEEEE
Confidence 35688899999999999874
No 220
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=59.89 E-value=15 Score=24.38 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=18.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+++|++........+..+++.+ .=+.+|-
T Consensus 69 ~DvVIdfT~p~~~~~~~~~al~~g-~~vVigt 99 (266)
T TIGR00036 69 PDVLIDFTTPEGVLNHLKFALEHG-VRLVVGT 99 (266)
T ss_pred CCEEEECCChHHHHHHHHHHHHCC-CCEEEEC
Confidence 599999995555555555555555 4444443
No 221
>PRK07340 ornithine cyclodeaminase; Validated
Probab=59.84 E-value=7.8 Score=26.22 Aligned_cols=40 Identities=13% Similarity=0.103 Sum_probs=29.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChh
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLV 42 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~ 42 (112)
+|+|+.|++++..+-.. .+++|-.+..+|.+.. ..+++..
T Consensus 189 aDiVitaT~s~~Pl~~~--~~~~g~hi~~iGs~~p~~~El~~~ 229 (304)
T PRK07340 189 VDLVVTATTSRTPVYPE--AARAGRLVVAVGAFTPDMAELAPR 229 (304)
T ss_pred CCEEEEccCCCCceeCc--cCCCCCEEEecCCCCCCcccCCHH
Confidence 69999999887655444 4799999999997553 5566643
No 222
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=59.37 E-value=11 Score=25.53 Aligned_cols=32 Identities=16% Similarity=0.253 Sum_probs=25.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+|+-|+|.+..+...+ +++|..++.+|...
T Consensus 202 ADIVIsavg~~~~v~~~~--lk~GavVIDvGin~ 233 (296)
T PRK14188 202 ADILVAAVGRPEMVKGDW--IKPGATVIDVGINR 233 (296)
T ss_pred CCEEEEecCChhhcchhe--ecCCCEEEEcCCcc
Confidence 599999999988666544 89999999998643
No 223
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=59.05 E-value=7.7 Score=25.76 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=18.5
Q ss_pred HHHHHHhhccCCcEEEEEecCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
++.....+|+|||.++..|.-.
T Consensus 181 al~ni~~lLkpGG~Lil~~~l~ 202 (256)
T PF01234_consen 181 ALRNISSLLKPGGHLILAGVLG 202 (256)
T ss_dssp HHHHHHTTEEEEEEEEEEEESS
T ss_pred HHHHHHHHcCCCcEEEEEEEcC
Confidence 5677788999999999999744
No 224
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=58.84 E-value=19 Score=25.80 Aligned_cols=20 Identities=25% Similarity=0.296 Sum_probs=16.2
Q ss_pred HHHHHHhhccCCcEEEEEec
Q psy12355 13 CLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~ 32 (112)
.+..+.+.+++||+++..-.
T Consensus 359 iL~~a~~~lkpgG~lvystc 378 (445)
T PRK14904 359 LLDHAASLLKPGGVLVYATC 378 (445)
T ss_pred HHHHHHHhcCCCcEEEEEeC
Confidence 47778889999999987643
No 225
>PRK06823 ornithine cyclodeaminase; Validated
Probab=58.73 E-value=11 Score=25.71 Aligned_cols=41 Identities=12% Similarity=0.071 Sum_probs=28.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChh
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLV 42 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~ 42 (112)
+|+|+-|+++...+- -.+.+++|-.+..+|.+.. ..+++..
T Consensus 193 ADIV~taT~s~~P~~-~~~~l~~G~hi~~iGs~~p~~~Eld~~ 234 (315)
T PRK06823 193 ANLIVTTTPSREPLL-QAEDIQPGTHITAVGADSPGKQELDAE 234 (315)
T ss_pred CCEEEEecCCCCcee-CHHHcCCCcEEEecCCCCcccccCCHH
Confidence 589998887665432 2468899999999996553 4555543
No 226
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=57.99 E-value=21 Score=20.72 Aligned_cols=31 Identities=10% Similarity=0.017 Sum_probs=19.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+||+|+.....-....+..+..|.-.+.+
T Consensus 93 ~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~ 123 (135)
T PF00899_consen 93 YDIVIDCVDSLAARLLLNEICREYGIPFIDA 123 (135)
T ss_dssp SSEEEEESSSHHHHHHHHHHHHHTT-EEEEE
T ss_pred CCEEEEecCCHHHHHHHHHHHHHcCCCEEEE
Confidence 5889999877665555555666666544443
No 227
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=57.93 E-value=14 Score=22.28 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=18.6
Q ss_pred HHHHHHHhhccCCcEEEEEecCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
..+....+.|+|||++++.-...
T Consensus 62 ~~l~ei~rvLkpGG~l~i~d~~~ 84 (160)
T PLN02232 62 RAMKEMYRVLKPGSRVSILDFNK 84 (160)
T ss_pred HHHHHHHHHcCcCeEEEEEECCC
Confidence 35788999999999999886543
No 228
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=57.80 E-value=15 Score=18.69 Aligned_cols=19 Identities=16% Similarity=0.167 Sum_probs=15.9
Q ss_pred HHHHHHHhhccCCcEEEEE
Q psy12355 12 NCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~ 30 (112)
..++...+.+..||++++.
T Consensus 51 ~~~~~l~~~v~~G~~lvl~ 69 (70)
T PF14258_consen 51 EEAEALLEWVEAGNTLVLA 69 (70)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 4567888999999999876
No 229
>PLN02476 O-methyltransferase
Probab=57.78 E-value=13 Score=25.04 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=21.0
Q ss_pred CcEEEEcccC---hHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGT---ENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~---~~~~~~~~~~l~~~G~iv~~g 31 (112)
||+||--... ...+..+++.|++||.++.=.
T Consensus 195 FD~VFIDa~K~~Y~~y~e~~l~lL~~GGvIV~DN 228 (278)
T PLN02476 195 YDFAFVDADKRMYQDYFELLLQLVRVGGVIVMDN 228 (278)
T ss_pred CCEEEECCCHHHHHHHHHHHHHhcCCCcEEEEec
Confidence 4666633222 346788899999999988653
No 230
>PLN02366 spermidine synthase
Probab=57.66 E-value=17 Score=24.76 Aligned_cols=19 Identities=11% Similarity=0.079 Sum_probs=15.9
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
-++.+.++|+++|.++..+
T Consensus 188 f~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 188 FFESVARALRPGGVVCTQA 206 (308)
T ss_pred HHHHHHHhcCCCcEEEECc
Confidence 4778889999999998764
No 231
>PF02875 Mur_ligase_C: Mur ligase family, glutamate ligase domain This Prosite entry is a subset of the Pfam family.; InterPro: IPR004101 The bacterial cell wall provides strength and rigidity to counteract internal osmotic pressure, and protection against the environment. The peptidoglycan layer gives the cell wall its strength, and helps maintain the overall shape of the cell. The basic peptidoglycan structure of both Gram-positive and Gram-negative bacteria is comprised of a sheet of glycan chains connected by short cross-linking polypeptides. Biosynthesis of peptidoglycan is a multi-step (11-12 steps) process comprising three main stages: (1) formation of UDP-N-acetylmuramic acid (UDPMurNAc) from N-acetylglucosamine (GlcNAc). (2) addition of a short polypeptide chain to the UDPMurNAc. (3) addition of a second GlcNAc to the disaccharide-pentapeptide building block and transport of this unit through the cytoplasmic membrane and incorporation into the growing peptidoglycan layer. Stage two involves four key Mur ligase enzymes: MurC (6.3.2.8 from EC) [], MurD (6.3.2.9 from EC) [], MurE (6.3.2.13 from EC) [] and MurF (6.3.2.10 from EC) []. These four Mur ligases are responsible for the successive additions of L-alanine, D-glutamate, meso-diaminopimelate or L-lysine, and D-alanyl-D-alanine to UDP-N-acetylmuramic acid. All four Mur ligases are topologically similar to one another, even though they display low sequence identity. They are each composed of three domains: an N-terminal Rossmann-fold domain responsible for binding the UDPMurNAc substrate; a central domain (similar to ATP-binding domains of several ATPases and GTPases); and a C-terminal domain (similar to dihydrofolate reductase fold) that appears to be associated with binding the incoming amino acid. The conserved sequence motifs found in the four Mur enzymes also map to other members of the Mur ligase family, including folylpolyglutamate synthetase, cyanophycin synthetase and the capB enzyme from Bacillales []. This entry represents the C-terminal domain from all four stage 2 Mur enzymes: UDP-N-acetylmuramate-L-alanine ligase (MurC), UDP-N-acetylmuramoylalanine-D-glutamate ligase (MurD), UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase (MurE), and UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase (MurF). This entry also includes the C-terminal domain of folylpolyglutamate synthase that transfers glutamate to folylpolyglutamate and cyanophycin synthetase that catalyses the biosynthesis of the cyanobacterial reserve material multi-L-arginyl-poly-L-aspartate (cyanophycin) []. The C-terminal domain is almost always associated with the cytoplasmic peptidoglycan synthetases, N-terminal domain (see IPR000713 from INTERPRO).; GO: 0005524 ATP binding, 0016874 ligase activity, 0009058 biosynthetic process; PDB: 2Y68_A 3UAG_A 4UAG_A 2UAG_A 1E0D_A 2XPC_A 2WJP_A 2VTE_A 2Y67_A 1EEH_A ....
Probab=57.19 E-value=23 Score=18.97 Aligned_cols=31 Identities=13% Similarity=0.210 Sum_probs=19.7
Q ss_pred cEEEEcccChHHHHHHHhhcc---CCcEEE-EEec
Q psy12355 2 MLYLDPLGTENCLTLGINVTK---MGGKLM-LVGM 32 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~---~~G~iv-~~g~ 32 (112)
.+++|..-++..+..+++.++ +.++++ ++|.
T Consensus 15 ~vi~D~ahNp~s~~a~l~~l~~~~~~~~~i~V~G~ 49 (91)
T PF02875_consen 15 TVIDDYAHNPDSIRALLEALKELYPKGRIIAVFGA 49 (91)
T ss_dssp EEEEET--SHHHHHHHHHHHHHHCTTSEEEEEEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHhccCCcEEEEEcc
Confidence 467887767777888888774 456654 5563
No 232
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=57.13 E-value=22 Score=25.32 Aligned_cols=26 Identities=0% Similarity=-0.222 Sum_probs=20.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGK 26 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~ 26 (112)
.|.||=|.++.++.+.|++..|+.+.
T Consensus 100 ~d~vff~NSGaEA~EaAiKlARk~~~ 125 (404)
T COG4992 100 ADRVFFCNSGAEANEAALKLARKYTG 125 (404)
T ss_pred ccEEEEcCCcHHHHHHHHHHHHHHcC
Confidence 36677777777889999999988775
No 233
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=56.38 E-value=22 Score=22.19 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=18.5
Q ss_pred HHHHHHHhhccCCcEEEEEecCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
..+..+.+.|++||+++.+....
T Consensus 124 ~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 124 KALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred HHHHHHHHHcCCCcEEEEEEecC
Confidence 45778889999999999887543
No 234
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=56.04 E-value=24 Score=23.47 Aligned_cols=30 Identities=10% Similarity=0.069 Sum_probs=22.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|+|++|++.....+.+.++++.|-.++..
T Consensus 68 ~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~ 97 (271)
T PRK13302 68 ADIVVEAAPASVLRAIVEPVLAAGKKAIVL 97 (271)
T ss_pred CCEEEECCCcHHHHHHHHHHHHcCCcEEEe
Confidence 489999998877666677788777666654
No 235
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=55.04 E-value=24 Score=23.00 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=24.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|+|++|++.....+.+.++|+.|=.+++.
T Consensus 38 vDaVviatp~~~H~e~a~~aL~aGkhVl~~ 67 (229)
T TIGR03855 38 VDIVVEAASQEAVKEYAEKILKNGKDLLIM 67 (229)
T ss_pred CCEEEECCChHHHHHHHHHHHHCCCCEEEE
Confidence 589999999888888888999887666664
No 236
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=54.85 E-value=15 Score=23.62 Aligned_cols=31 Identities=19% Similarity=0.101 Sum_probs=21.6
Q ss_pred CcEEEEcccCh--------HHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTE--------NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~--------~~~~~~~~~l~~~G~iv~~g 31 (112)
||+|+|++.-- .-.....++|+++|++..+.
T Consensus 117 fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 117 FDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp EEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 58899975421 23566788999999955554
No 237
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.55 E-value=15 Score=24.87 Aligned_cols=32 Identities=25% Similarity=0.386 Sum_probs=25.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|++|-++|.+..+.. +.+++|..++.+|...
T Consensus 202 ADIVIsAvg~p~~i~~--~~vk~gavVIDvGi~~ 233 (286)
T PRK14175 202 ADVIVSAVGKPGLVTK--DVVKEGAVIIDVGNTP 233 (286)
T ss_pred CCEEEECCCCCcccCH--HHcCCCcEEEEcCCCc
Confidence 6999999999876554 5689998888898654
No 238
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=54.43 E-value=14 Score=24.96 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=25.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++.++|.+..+.. +.+++|..++.+|..
T Consensus 203 ADIvi~avG~p~~v~~--~~vk~gavVIDvGin 233 (285)
T PRK10792 203 ADLLVVAVGKPGFIPG--EWIKPGAIVIDVGIN 233 (285)
T ss_pred CCEEEEcCCCcccccH--HHcCCCcEEEEcccc
Confidence 6999999999886553 889999999999954
No 239
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=53.90 E-value=30 Score=24.35 Aligned_cols=21 Identities=14% Similarity=0.170 Sum_probs=17.1
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.+.|+|||++++...
T Consensus 248 ~~l~~i~r~LkpGG~lvl~~i 268 (383)
T PRK11705 248 TYFEVVRRCLKPDGLFLLHTI 268 (383)
T ss_pred HHHHHHHHHcCCCcEEEEEEc
Confidence 457888889999999987643
No 240
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=53.62 E-value=23 Score=25.30 Aligned_cols=18 Identities=28% Similarity=0.270 Sum_probs=14.5
Q ss_pred HHHHHHhhccCCcEEEEE
Q psy12355 13 CLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~ 30 (112)
.+..+++.|++||+++..
T Consensus 366 iL~~a~~~lkpgG~lvys 383 (434)
T PRK14901 366 LLESLAPLLKPGGTLVYA 383 (434)
T ss_pred HHHHHHHhcCCCCEEEEE
Confidence 477788899999998754
No 241
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=53.59 E-value=24 Score=23.35 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=20.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|+|++|++.....+.+..+++.|-.++..
T Consensus 62 ~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~ 91 (265)
T PRK13304 62 VDLVVECASVNAVEEVVPKSLENGKDVIIM 91 (265)
T ss_pred CCEEEEcCChHHHHHHHHHHHHcCCCEEEE
Confidence 589999997666666667777765445554
No 242
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=53.07 E-value=25 Score=24.03 Aligned_cols=31 Identities=6% Similarity=0.116 Sum_probs=22.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+||+++|.......+.+++..|-+++...
T Consensus 71 IDiVf~AT~a~~H~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 71 IDIVFDATSAGAHVRHAAKLREAGIRAIDLT 101 (302)
T ss_pred CCEEEECCCHHHHHHHHHHHHHcCCeEEECC
Confidence 5899999988776676666766666666554
No 243
>PLN02244 tocopherol O-methyltransferase
Probab=52.99 E-value=30 Score=23.79 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=17.6
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.+.|+|||++++...
T Consensus 204 ~~l~e~~rvLkpGG~lvi~~~ 224 (340)
T PLN02244 204 KFVQELARVAAPGGRIIIVTW 224 (340)
T ss_pred HHHHHHHHHcCCCcEEEEEEe
Confidence 467788999999999998764
No 244
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=52.98 E-value=29 Score=21.92 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=18.0
Q ss_pred HHHHHHHhhccCCcEEEEEecC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
..+..+.++|+++|+++.+...
T Consensus 139 ~~l~~~~~~L~~gG~li~~~~~ 160 (239)
T PRK00216 139 KALREMYRVLKPGGRLVILEFS 160 (239)
T ss_pred HHHHHHHHhccCCcEEEEEEec
Confidence 4678889999999999887643
No 245
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=52.90 E-value=61 Score=20.96 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=18.0
Q ss_pred HHHHHHHhhccCCcEEEEEecC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
..+..+.+.|++||.++.....
T Consensus 121 ~~l~~~~~~Lk~gG~l~~~~~~ 142 (251)
T PRK10258 121 TALRELYRVVRPGGVVAFTTLV 142 (251)
T ss_pred HHHHHHHHHcCCCeEEEEEeCC
Confidence 4678889999999999987543
No 246
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=52.79 E-value=24 Score=23.01 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=22.4
Q ss_pred CcEEEEcccC---h-----HHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGT---E-----NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~---~-----~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|.|+|.+-- + .-.....++|+++|+++.+..
T Consensus 125 fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~ 164 (226)
T PRK13256 125 FDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVM 164 (226)
T ss_pred cCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEE
Confidence 5788885421 1 234567778999999998875
No 247
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=52.60 E-value=26 Score=23.53 Aligned_cols=32 Identities=16% Similarity=-0.072 Sum_probs=20.7
Q ss_pred CcEEEEcccChHH---HHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENC---LTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~---~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+|+.|++.... +......++++..++.+|.
T Consensus 67 aDvViiavp~~~~~~v~~~l~~~l~~~~iv~dvgs 101 (307)
T PRK07502 67 ADLVILCVPVGASGAVAAEIAPHLKPGAIVTDVGS 101 (307)
T ss_pred CCEEEECCCHHHHHHHHHHHHhhCCCCCEEEeCcc
Confidence 5899999976432 3333446677777776654
No 248
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=52.41 E-value=24 Score=23.23 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=18.9
Q ss_pred HHHHHHHhhccCCcEEEEEecCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
..+....+.|+|||+++.+-...
T Consensus 163 ~~l~ei~rvLkpGG~l~i~d~~~ 185 (261)
T PLN02233 163 KAMQEMYRVLKPGSRVSILDFNK 185 (261)
T ss_pred HHHHHHHHHcCcCcEEEEEECCC
Confidence 46788999999999999886544
No 249
>PRK08317 hypothetical protein; Provisional
Probab=52.22 E-value=26 Score=22.06 Aligned_cols=20 Identities=20% Similarity=0.384 Sum_probs=17.3
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
..+..+.++|+++|+++...
T Consensus 105 ~~l~~~~~~L~~gG~l~~~~ 124 (241)
T PRK08317 105 RALAEIARVLRPGGRVVVLD 124 (241)
T ss_pred HHHHHHHHHhcCCcEEEEEe
Confidence 46888999999999998775
No 250
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=52.19 E-value=18 Score=24.46 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=24.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+... .+++|..++.+|..
T Consensus 196 ADIvI~Avgk~~lv~~~--~vk~GavVIDVgi~ 226 (279)
T PRK14178 196 ADILVSAAGKAGFITPD--MVKPGATVIDVGIN 226 (279)
T ss_pred CCEEEECCCcccccCHH--HcCCCcEEEEeecc
Confidence 69999999877655543 37999999999964
No 251
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=51.82 E-value=21 Score=23.62 Aligned_cols=30 Identities=13% Similarity=0.129 Sum_probs=22.6
Q ss_pred cEEE-EcccCh-HHHHHHHhhc-cCCcEEEEEec
Q psy12355 2 MLYL-DPLGTE-NCLTLGINVT-KMGGKLMLVGM 32 (112)
Q Consensus 2 D~v~-d~~g~~-~~~~~~~~~l-~~~G~iv~~g~ 32 (112)
|.|| |.- .| .++..+.+.| ++||+++.+.-
T Consensus 115 DavfLDlp-~Pw~~i~~~~~~L~~~gG~i~~fsP 147 (247)
T PF08704_consen 115 DAVFLDLP-DPWEAIPHAKRALKKPGGRICCFSP 147 (247)
T ss_dssp EEEEEESS-SGGGGHHHHHHHE-EEEEEEEEEES
T ss_pred cEEEEeCC-CHHHHHHHHHHHHhcCCceEEEECC
Confidence 4443 643 44 4789999999 99999999963
No 252
>PLN03075 nicotianamine synthase; Provisional
Probab=51.75 E-value=25 Score=23.96 Aligned_cols=32 Identities=13% Similarity=-0.048 Sum_probs=23.0
Q ss_pred CcEEEEcc-------cChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPL-------GTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~-------g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
||+|+-.+ .....+....+.|++||.++.-..
T Consensus 196 FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~~ 234 (296)
T PLN03075 196 YDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLMLRSA 234 (296)
T ss_pred cCEEEEecccccccccHHHHHHHHHHhcCCCcEEEEecc
Confidence 56666443 223578889999999999987753
No 253
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=51.34 E-value=33 Score=21.61 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=17.4
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+....+.|+++|.++....
T Consensus 116 ~~l~~~~~~L~~~G~l~~~~~ 136 (240)
T TIGR02072 116 QALSELARVLKPGGLLAFSTF 136 (240)
T ss_pred HHHHHHHHHcCCCcEEEEEeC
Confidence 467888899999999997753
No 254
>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]
Probab=50.92 E-value=23 Score=24.50 Aligned_cols=42 Identities=7% Similarity=-0.012 Sum_probs=29.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC-CccccChhh
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP-QMVSVPLVN 43 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~-~~~~~~~~~ 43 (112)
+|+|+-|+.+..++- --++|++|-+|..+|... +..+++..-
T Consensus 196 aDiIvt~T~s~~Pil-~~~~l~~G~hI~aiGad~p~k~Eld~e~ 238 (330)
T COG2423 196 ADIVVTATPSTEPVL-KAEWLKPGTHINAIGADAPGKRELDPEV 238 (330)
T ss_pred CCEEEEecCCCCCee-cHhhcCCCcEEEecCCCCcccccCCHHH
Confidence 589999887765322 457899999999999533 355555433
No 255
>PRK00811 spermidine synthase; Provisional
Probab=50.69 E-value=29 Score=23.23 Aligned_cols=19 Identities=11% Similarity=-0.029 Sum_probs=15.3
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
-+..+.+.|+++|.++...
T Consensus 173 f~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 173 FYENCKRALKEDGIFVAQS 191 (283)
T ss_pred HHHHHHHhcCCCcEEEEeC
Confidence 3567789999999998764
No 256
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=50.64 E-value=29 Score=23.52 Aligned_cols=13 Identities=8% Similarity=0.174 Sum_probs=10.5
Q ss_pred CcEEEEcccChHH
Q psy12355 1 MMLYLDPLGTENC 13 (112)
Q Consensus 1 ~D~v~d~~g~~~~ 13 (112)
+|+||.|+|.+..
T Consensus 239 aDvVi~at~~~~~ 251 (311)
T cd05213 239 ADVVISATGAPHY 251 (311)
T ss_pred CCEEEECCCCCch
Confidence 5899999988765
No 257
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=50.63 E-value=14 Score=23.64 Aligned_cols=31 Identities=10% Similarity=0.162 Sum_probs=19.8
Q ss_pred CcEEE-EcccC--hHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYL-DPLGT--ENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~-d~~g~--~~~~~~~~~~l~~~G~iv~~g 31 (112)
||+|| |+--. ...+..++++|++||.++.=.
T Consensus 122 fD~VFiDa~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 122 FDFVFIDADKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEEEEESTGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred eeEEEEcccccchhhHHHHHhhhccCCeEEEEcc
Confidence 35555 54311 234677888899999887664
No 258
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=50.58 E-value=19 Score=24.58 Aligned_cols=31 Identities=16% Similarity=0.263 Sum_probs=25.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+|+-++|.+..+...+ +++|..++.+|..
T Consensus 203 ADIVIsavg~~~~v~~~~--ik~GaiVIDvgin 233 (301)
T PRK14194 203 ADIVVAAVGRPRLIDADW--LKPGAVVIDVGIN 233 (301)
T ss_pred CCEEEEecCChhcccHhh--ccCCcEEEEeccc
Confidence 599999999987666554 8999999999854
No 259
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=50.58 E-value=16 Score=22.33 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=15.6
Q ss_pred HHHHHHhhccCCcEEEEEecC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~ 33 (112)
.+..+++.|++||.++.--..
T Consensus 121 ~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 121 QLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp HHHHHHHHHCTTEEEEEEESS
T ss_pred HHHHHHhhhcCCCEEEEEecc
Confidence 456677889999998865433
No 260
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=50.20 E-value=26 Score=19.43 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=23.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+|+-+++.+..-....+..+..|.++.+...+
T Consensus 61 ~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p 94 (103)
T PF13241_consen 61 ADLVFAATDDPELNEAIYADARARGILVNVVDDP 94 (103)
T ss_dssp ESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-C
T ss_pred heEEEecCCCHHHHHHHHHHHhhCCEEEEECCCc
Confidence 4788988888776666666777799999887544
No 261
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=49.48 E-value=18 Score=24.37 Aligned_cols=32 Identities=16% Similarity=0.307 Sum_probs=24.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++.++|.+..+. .+.++++..++.+|...
T Consensus 203 aDIvI~AtG~~~~v~--~~~lk~gavViDvg~n~ 234 (283)
T PRK14192 203 ADIIVGAVGKPELIK--KDWIKQGAVVVDAGFHP 234 (283)
T ss_pred CCEEEEccCCCCcCC--HHHcCCCCEEEEEEEee
Confidence 689999998776444 35689998888888654
No 262
>PRK07402 precorrin-6B methylase; Provisional
Probab=49.27 E-value=42 Score=20.84 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=16.0
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.+.|++||+++....
T Consensus 123 ~~l~~~~~~LkpgG~li~~~~ 143 (196)
T PRK07402 123 EILQAVWQYLKPGGRLVATAS 143 (196)
T ss_pred HHHHHHHHhcCCCeEEEEEee
Confidence 557777888888888887753
No 263
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=49.26 E-value=23 Score=23.40 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=19.1
Q ss_pred CcEEE-Ecc--cChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYL-DPL--GTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~-d~~--g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
||+|| |+- .....+..+++.+++||.|+.=
T Consensus 157 fD~iFiDadK~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 157 FDFIFVDADKDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred ccEEEecCCHHHhHHHHHHHHHhcCCCeEEEEc
Confidence 45565 332 1234577788999999987753
No 264
>PF14237 DUF4339: Domain of unknown function (DUF4339)
Probab=49.00 E-value=29 Score=16.12 Aligned_cols=21 Identities=14% Similarity=0.290 Sum_probs=17.2
Q ss_pred CCHHHHHHHHHcCCCCCccce
Q psy12355 59 NDYPDALEMVASGKCPVRKLI 79 (112)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~ 79 (112)
-...++.+++.+|.+....++
T Consensus 14 ~s~~el~~l~~~g~i~~~tlv 34 (45)
T PF14237_consen 14 FSLEELRQLISSGEIDPDTLV 34 (45)
T ss_pred cCHHHHHHHHHcCCCCCCCeE
Confidence 568899999999999876554
No 265
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=48.98 E-value=37 Score=22.98 Aligned_cols=30 Identities=7% Similarity=0.127 Sum_probs=22.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|+|++|++.......+..++..|=.++..
T Consensus 65 IDaV~iaTp~~~H~e~a~~al~aGk~VIde 94 (285)
T TIGR03215 65 IDIVFDATSAKAHARHARLLAELGKIVIDL 94 (285)
T ss_pred CCEEEECCCcHHHHHHHHHHHHcCCEEEEC
Confidence 589999999887777777776666555544
No 266
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=48.45 E-value=30 Score=19.30 Aligned_cols=22 Identities=0% Similarity=-0.133 Sum_probs=9.3
Q ss_pred cEEEEcccChHHHHHHHhhccC
Q psy12355 2 MLYLDPLGTENCLTLGINVTKM 23 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~~ 23 (112)
|+|+.+++.....+.+..+++.
T Consensus 64 D~V~I~tp~~~h~~~~~~~l~~ 85 (120)
T PF01408_consen 64 DAVIIATPPSSHAEIAKKALEA 85 (120)
T ss_dssp SEEEEESSGGGHHHHHHHHHHT
T ss_pred CEEEEecCCcchHHHHHHHHHc
Confidence 4444444444333333444433
No 267
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=48.14 E-value=32 Score=23.65 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=22.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+||.|+|...+...+-+.+..|.+++..+
T Consensus 64 vDvVf~A~g~g~s~~~~~~~~~~G~~VIDlS 94 (334)
T PRK14874 64 VDIALFSAGGSVSKKYAPKAAAAGAVVIDNS 94 (334)
T ss_pred CCEEEECCChHHHHHHHHHHHhCCCEEEECC
Confidence 5999999988776666666667766666554
No 268
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=48.10 E-value=34 Score=20.02 Aligned_cols=30 Identities=13% Similarity=-0.005 Sum_probs=19.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|+|++|+.+........+..+..|.-...
T Consensus 90 ~diVi~~~d~~~~~~~l~~~~~~~~i~~i~ 119 (143)
T cd01483 90 VDLVIDAIDNIAVRRALNRACKELGIPVID 119 (143)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 588999987766544455566666654333
No 269
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=48.04 E-value=19 Score=22.11 Aligned_cols=30 Identities=20% Similarity=0.346 Sum_probs=19.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+++-++|.+..+. -+.+++|..++.+|.
T Consensus 80 ADIVVsa~G~~~~i~--~~~ik~gavVIDvG~ 109 (160)
T PF02882_consen 80 ADIVVSAVGKPNLIK--ADWIKPGAVVIDVGI 109 (160)
T ss_dssp SSEEEE-SSSTT-B---GGGS-TTEEEEE--C
T ss_pred ccEEeeeeccccccc--cccccCCcEEEecCC
Confidence 589999999887554 568899998888885
No 270
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=47.94 E-value=23 Score=23.74 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=25.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++|.+ .|+.....++.....|.-..+|...
T Consensus 70 ~DV~IDFT-~P~~~~~~l~~~~~~~~~lVIGTTG 102 (266)
T COG0289 70 ADVLIDFT-TPEATLENLEFALEHGKPLVIGTTG 102 (266)
T ss_pred CCEEEECC-CchhhHHHHHHHHHcCCCeEEECCC
Confidence 59999998 6676777888888888877887543
No 271
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=47.49 E-value=32 Score=23.57 Aligned_cols=19 Identities=21% Similarity=0.163 Sum_probs=16.5
Q ss_pred HHHHHHHhhccCCcEEEEE
Q psy12355 12 NCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~ 30 (112)
..+..+.++|++||++++-
T Consensus 206 ~~L~el~r~LkpGG~Lvle 224 (314)
T TIGR00452 206 EHLKQLKHQLVIKGELVLE 224 (314)
T ss_pred HHHHHHHHhcCCCCEEEEE
Confidence 4688899999999999965
No 272
>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed
Probab=47.30 E-value=24 Score=21.76 Aligned_cols=25 Identities=16% Similarity=0.169 Sum_probs=22.0
Q ss_pred EEEEcccChHHHHHHHhhccCCcEE
Q psy12355 3 LYLDPLGTENCLTLGINVTKMGGKL 27 (112)
Q Consensus 3 ~v~d~~g~~~~~~~~~~~l~~~G~i 27 (112)
++++.+|.+.-+...++.|+|.|.+
T Consensus 120 ~~iE~tG~~~ki~~~~~~l~~~gi~ 144 (161)
T PRK11895 120 LTIEVTGDSDKIDAFIDLLRPYGIK 144 (161)
T ss_pred EEEEEeCCHHHHHHHHHHhhhcCCE
Confidence 5789999999899999999999944
No 273
>PRK08374 homoserine dehydrogenase; Provisional
Probab=46.81 E-value=34 Score=23.59 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=18.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLM 28 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv 28 (112)
+|+++|+++...+.....++++.|=.+|
T Consensus 92 ~DVvVd~t~~~~a~~~~~~al~~G~~VV 119 (336)
T PRK08374 92 ADIVVDVTNDKNAHEWHLEALKEGKSVV 119 (336)
T ss_pred CCEEEECCCcHHHHHHHHHHHhhCCcEE
Confidence 5899999977665555666666555544
No 274
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=46.79 E-value=32 Score=22.98 Aligned_cols=20 Identities=20% Similarity=0.135 Sum_probs=15.7
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
..+....+.|++||.++.+.
T Consensus 204 ~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 204 AIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred HHHHHHHHhcCCCcEEEEEE
Confidence 35777888999999976654
No 275
>PF13065 DUF3928: Protein of unknown function (DUF3928)
Probab=46.72 E-value=41 Score=17.95 Aligned_cols=33 Identities=18% Similarity=0.346 Sum_probs=26.8
Q ss_pred CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHh
Q psy12355 59 NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTAS 96 (112)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~ 96 (112)
+.++++..+.+-|++.. -.++-+++++||+.+.
T Consensus 59 kalqeiarlvelgrfty-----vhyrn~eie~afeavk 91 (95)
T PF13065_consen 59 KALQEIARLVELGRFTY-----VHYRNEEIEKAFEAVK 91 (95)
T ss_pred HHHHHHHHHHHhcceeE-----EEeccHHHHHHHHHHh
Confidence 67889999999997643 2488999999999864
No 276
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=46.63 E-value=34 Score=21.77 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=16.5
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.+.++++|+++....
T Consensus 132 ~~l~~~~~~L~~gG~l~v~~~ 152 (233)
T PRK05134 132 SFVRACAKLVKPGGLVFFSTL 152 (233)
T ss_pred HHHHHHHHHcCCCcEEEEEec
Confidence 356888899999999886643
No 277
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=46.35 E-value=20 Score=24.23 Aligned_cols=31 Identities=29% Similarity=0.480 Sum_probs=25.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+.. +.+++|..++.+|..
T Consensus 202 ADIVV~avG~~~~i~~--~~ik~gavVIDVGin 232 (285)
T PRK14189 202 ADIVVAAVGKRNVLTA--DMVKPGATVIDVGMN 232 (285)
T ss_pred CCEEEEcCCCcCccCH--HHcCCCCEEEEcccc
Confidence 5899999998875553 889999999999964
No 278
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=46.01 E-value=84 Score=20.59 Aligned_cols=88 Identities=16% Similarity=0.175 Sum_probs=51.5
Q ss_pred EEcccChHHHHHHHhhcc---CCcEEEEEecCC-CccccChh-hhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCCccc
Q psy12355 5 LDPLGTENCLTLGINVTK---MGGKLMLVGMGP-QMVSVPLV-NACAKEIDILSCFRYV-NDYPDALEMVASGKCPVRKL 78 (112)
Q Consensus 5 ~d~~g~~~~~~~~~~~l~---~~G~iv~~g~~~-~~~~~~~~-~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~~~~ 78 (112)
|.++|...+++.+...++ | -++++-.+. +.-.+++. .+......+--...+. .+++.+-+.+..|.++. +
T Consensus 26 F~~vg~A~~~~ea~~~i~~~~p--DLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI~iTAA~d~~tI~~alr~Gv~DY--L 101 (224)
T COG4565 26 FSVVGTAGTLEEAKMIIEEFKP--DLILLDIYMPDGNGIELLPELRSQHYPVDVIVITAASDMETIKEALRYGVVDY--L 101 (224)
T ss_pred ceEEEeeccHHHHHHHHHhhCC--CEEEEeeccCCCccHHHHHHHHhcCCCCCEEEEeccchHHHHHHHHhcCchhh--e
Confidence 345555555666666664 4 455554332 22333332 3443333333333333 67788888888998876 3
Q ss_pred eeeeeCcccHHHHHHHHhc
Q psy12355 79 ITHNFKLEEAVEAFKTASK 97 (112)
Q Consensus 79 ~~~~~~l~~~~~a~~~~~~ 97 (112)
+ +.|.++...+++.....
T Consensus 102 i-KPf~~eRl~~aL~~y~~ 119 (224)
T COG4565 102 I-KPFTFERLQQALTRYRQ 119 (224)
T ss_pred e-cceeHHHHHHHHHHHHH
Confidence 4 67888998888887654
No 279
>TIGR00119 acolac_sm acetolactate synthase, small subunit. acetohydroxyacid synthase is a synonym.
Probab=45.95 E-value=38 Score=20.76 Aligned_cols=25 Identities=8% Similarity=0.053 Sum_probs=21.7
Q ss_pred EEEEcccChHHHHHHHhhccCCcEE
Q psy12355 3 LYLDPLGTENCLTLGINVTKMGGKL 27 (112)
Q Consensus 3 ~v~d~~g~~~~~~~~~~~l~~~G~i 27 (112)
++++.+|.+.-+...++.|++.|.+
T Consensus 119 ~~ie~tG~~~ki~~~~~~l~~~gi~ 143 (157)
T TIGR00119 119 YTVEVTGDSDKIDAFLELLRPFGIK 143 (157)
T ss_pred EEEEEcCCHHHHHHHHHHhhhcCCE
Confidence 5789999998899999999999843
No 280
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=45.72 E-value=46 Score=21.11 Aligned_cols=47 Identities=11% Similarity=0.035 Sum_probs=27.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKE 48 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~ 48 (112)
+|+|+-|++.++ ++..+...+..+.++.....++...|-++..+.++
T Consensus 71 adlViaaT~d~e-lN~~i~~~a~~~~lvn~~d~~~~~~f~~Pa~~~~g 117 (202)
T PRK06718 71 AFLVIAATNDPR-VNEQVKEDLPENALFNVITDAESGNVVFPSALHRG 117 (202)
T ss_pred ceEEEEcCCCHH-HHHHHHHHHHhCCcEEECCCCccCeEEEeeEEEcC
Confidence 588999998776 45555544455677777543333344444444443
No 281
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=45.70 E-value=24 Score=23.68 Aligned_cols=20 Identities=20% Similarity=0.531 Sum_probs=17.2
Q ss_pred HHHHHHhhccCCcEEEEEec
Q psy12355 13 CLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~ 32 (112)
.+..+.+.|+|||++++.-.
T Consensus 236 il~~~~~~L~pgG~l~i~d~ 255 (306)
T TIGR02716 236 MCKKAFDAMRSGGRLLILDM 255 (306)
T ss_pred HHHHHHHhcCCCCEEEEEEe
Confidence 57788999999999998853
No 282
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=45.53 E-value=24 Score=20.85 Aligned_cols=33 Identities=18% Similarity=0.157 Sum_probs=22.8
Q ss_pred CcEEEEccc-----Ch-HHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLG-----TE-NCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g-----~~-~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
||+|+.... .+ ..+..+.++++++|+++..-..
T Consensus 74 ~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 74 FDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp EEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred eeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 477776421 11 3578889999999998877543
No 283
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=45.05 E-value=48 Score=23.75 Aligned_cols=18 Identities=28% Similarity=0.231 Sum_probs=14.9
Q ss_pred HHHHHHhhccCCcEEEEE
Q psy12355 13 CLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~ 30 (112)
.+..+.+.|++||+++..
T Consensus 361 iL~~a~~~LkpGG~lvys 378 (444)
T PRK14902 361 ILESVAQYLKKGGILVYS 378 (444)
T ss_pred HHHHHHHHcCCCCEEEEE
Confidence 477788999999998854
No 284
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=44.97 E-value=38 Score=23.20 Aligned_cols=20 Identities=25% Similarity=0.222 Sum_probs=16.7
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
..+..+.+.|++||++++-.
T Consensus 207 ~~L~~l~~~LkpGG~lvl~~ 226 (322)
T PRK15068 207 DHLKQLKDQLVPGGELVLET 226 (322)
T ss_pred HHHHHHHHhcCCCcEEEEEE
Confidence 46888999999999998653
No 285
>CHL00100 ilvH acetohydroxyacid synthase small subunit
Probab=44.50 E-value=28 Score=21.77 Aligned_cols=25 Identities=16% Similarity=0.110 Sum_probs=21.7
Q ss_pred EEEEcccChHHHHHHHhhccCCcEE
Q psy12355 3 LYLDPLGTENCLTLGINVTKMGGKL 27 (112)
Q Consensus 3 ~v~d~~g~~~~~~~~~~~l~~~G~i 27 (112)
++++.+|.+.-+...++.|++.|.+
T Consensus 120 ~~ie~tG~~~ki~a~~~~l~~~gi~ 144 (174)
T CHL00100 120 LILEVTGDPGKIVAIEQLLEKFGII 144 (174)
T ss_pred EEEEEcCCHHHHHHHHHHhhhcCCE
Confidence 5789999998899999999999843
No 286
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=44.18 E-value=49 Score=21.02 Aligned_cols=19 Identities=21% Similarity=0.319 Sum_probs=15.9
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
.+..+.+.|++||+++..-
T Consensus 147 ~L~~~~~~LkpGG~~vi~~ 165 (209)
T PRK11188 147 ALDMCRDVLAPGGSFVVKV 165 (209)
T ss_pred HHHHHHHHcCCCCEEEEEE
Confidence 5678889999999998853
No 287
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=44.17 E-value=39 Score=23.38 Aligned_cols=31 Identities=13% Similarity=0.066 Sum_probs=22.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|++|.|+|...+...+-+.+..|.+++..+
T Consensus 62 ~D~v~~a~g~~~s~~~a~~~~~~G~~VID~s 92 (339)
T TIGR01296 62 IDIALFSAGGSVSKEFAPKAAKCGAIVIDNT 92 (339)
T ss_pred CCEEEECCCHHHHHHHHHHHHHCCCEEEECC
Confidence 5899999998877666666667666666554
No 288
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=44.11 E-value=54 Score=22.73 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=24.1
Q ss_pred cEEEEcccCh-----HHHHHHHhhccCCcEEEEEecCCC
Q psy12355 2 MLYLDPLGTE-----NCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 2 D~v~d~~g~~-----~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
|.++-..+.. ..+.++...|++||+++.+|.-.+
T Consensus 78 d~~~~~~pk~k~~~~~~l~~~~~~l~~g~~i~~~G~~~~ 116 (342)
T PRK09489 78 DTLIYYWPKNKQEAQFQLMNLLSLLPVGTDIFVVGENRS 116 (342)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHhCCCCCEEEEEEeccc
Confidence 4455444432 357788899999999999996543
No 289
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.72 E-value=25 Score=23.83 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=25.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+... .+++|..++.+|..
T Consensus 202 ADIVI~avg~~~~v~~~--~ik~GavVIDvgin 232 (284)
T PRK14179 202 ADILVVAIGRGHFVTKE--FVKEGAVVIDVGMN 232 (284)
T ss_pred CCEEEEecCccccCCHH--HccCCcEEEEecce
Confidence 68999999998866654 48999888898854
No 290
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=43.56 E-value=31 Score=22.75 Aligned_cols=21 Identities=14% Similarity=0.137 Sum_probs=17.5
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.++|+|||++++...
T Consensus 137 ~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 137 KLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred HHHHHHHHHcCCCcEEEEEEe
Confidence 467778899999999998764
No 291
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=43.35 E-value=25 Score=21.02 Aligned_cols=32 Identities=6% Similarity=-0.071 Sum_probs=24.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|-.++.+|...
T Consensus 72 ADIVvsAtg~~~~i~--~~~ikpGa~Vidvg~~~ 103 (140)
T cd05212 72 ADVVVVGSPKPEKVP--TEWIKPGATVINCSPTK 103 (140)
T ss_pred CCEEEEecCCCCccC--HHHcCCCCEEEEcCCCc
Confidence 588999898876444 56789998888887544
No 292
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=43.33 E-value=27 Score=23.06 Aligned_cols=19 Identities=21% Similarity=0.308 Sum_probs=15.7
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
.+..+++.+++||+++...
T Consensus 181 iL~~a~~~lkpgG~lvYst 199 (264)
T TIGR00446 181 LIDSAFDALKPGGVLVYST 199 (264)
T ss_pred HHHHHHHhcCCCCEEEEEe
Confidence 6778899999999998554
No 293
>PTZ00146 fibrillarin; Provisional
Probab=43.16 E-value=48 Score=22.63 Aligned_cols=30 Identities=10% Similarity=0.183 Sum_probs=19.4
Q ss_pred CcEEEEcccChH----HHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTEN----CLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~----~~~~~~~~l~~~G~iv~~ 30 (112)
+|+||-.+.-+. .+..+...|+++|++++.
T Consensus 203 vDvV~~Dva~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 203 VDVIFADVAQPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred CCEEEEeCCCcchHHHHHHHHHHhccCCCEEEEE
Confidence 477775443332 234566799999999883
No 294
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=42.42 E-value=53 Score=21.29 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=16.6
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
..+..+.++|++||+++...
T Consensus 111 ~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 111 ELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred HHHHHHHHhcCCCcEEEEEC
Confidence 46788899999999998753
No 295
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=42.35 E-value=65 Score=20.26 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=12.5
Q ss_pred HHHHHHHhhccCCcEEEEE
Q psy12355 12 NCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~ 30 (112)
..+..+.+.|+++|++++.
T Consensus 137 ~~l~~i~~~LkpgG~l~i~ 155 (202)
T PRK00121 137 EFLALYARKLKPGGEIHFA 155 (202)
T ss_pred HHHHHHHHHcCCCCEEEEE
Confidence 3466666777777777665
No 296
>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]
Probab=42.32 E-value=1.2e+02 Score=21.31 Aligned_cols=57 Identities=9% Similarity=0.089 Sum_probs=37.9
Q ss_pred CcEEEEcc---cChH---HHHHHHhhccCCcEEEEEecCCC-cccc--ChhhhhhcCeeEEeEecc
Q psy12355 1 MMLYLDPL---GTEN---CLTLGINVTKMGGKLMLVGMGPQ-MVSV--PLVNACAKEIDILSCFRY 57 (112)
Q Consensus 1 ~D~v~d~~---g~~~---~~~~~~~~l~~~G~iv~~g~~~~-~~~~--~~~~~~~~~~~l~g~~~~ 57 (112)
+|+||.+. |.+. .....++.++||..++.+....+ +.+. +-.....++.+|.|-...
T Consensus 245 ~DivITTAlIPGrpAP~Lvt~~mv~sMkpGSViVDlAa~~GGNce~t~pg~~v~~~gV~iig~~nl 310 (356)
T COG3288 245 VDIVITTALIPGRPAPKLVTAEMVASMKPGSVIVDLAAETGGNCELTEPGKVVTKNGVKIIGYTNL 310 (356)
T ss_pred CCEEEEecccCCCCCchhhHHHHHHhcCCCcEEEEehhhcCCCcccccCCeEEEeCCeEEEeecCc
Confidence 57888765 2222 34668899999999999975443 3332 223466778899987643
No 297
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=42.22 E-value=41 Score=23.96 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=15.2
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
.+..+.+.|++||+++..-
T Consensus 354 iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 354 ILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred HHHHHHHhcCCCCEEEEEe
Confidence 5778888999999988554
No 298
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=41.98 E-value=24 Score=21.21 Aligned_cols=7 Identities=14% Similarity=0.349 Sum_probs=3.1
Q ss_pred cEEEEEe
Q psy12355 25 GKLMLVG 31 (112)
Q Consensus 25 G~iv~~g 31 (112)
+.++.+|
T Consensus 63 ~~VIa~G 69 (158)
T PF01202_consen 63 NCVIACG 69 (158)
T ss_dssp SEEEEE-
T ss_pred cEEEeCC
Confidence 5555554
No 299
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=41.39 E-value=65 Score=21.21 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=24.8
Q ss_pred CcEEEEcccChH---HHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEe
Q psy12355 1 MMLYLDPLGTEN---CLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCF 55 (112)
Q Consensus 1 ~D~v~d~~g~~~---~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~ 55 (112)
+|+|+-|++... .+......+++++.+..+|.-..++---+.........+.|++
T Consensus 46 ~DlvvlavP~~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~~~~v~~H 103 (258)
T PF02153_consen 46 ADLVVLAVPVSAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEGVRFVGGH 103 (258)
T ss_dssp CSEEEE-S-HHHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSSGEEEEEE
T ss_pred CCEEEEcCCHHHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcccceeecC
Confidence 588888886543 3333444566677777776433222111222333355555555
No 300
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=41.30 E-value=45 Score=21.98 Aligned_cols=30 Identities=20% Similarity=0.152 Sum_probs=18.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+|+|++......+.+..+++. |.=+.+|
T Consensus 61 ~DvVid~t~p~~~~~~~~~al~~-G~~vvig 90 (257)
T PRK00048 61 ADVLIDFTTPEATLENLEFALEH-GKPLVIG 90 (257)
T ss_pred CCEEEECCCHHHHHHHHHHHHHc-CCCEEEE
Confidence 58999999544444445555555 5544466
No 301
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=40.58 E-value=69 Score=20.29 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=25.6
Q ss_pred CcEEEEcccCh--------HHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTE--------NCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~--------~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|.|+-|++-- +.+++++..++.||.++.+.+.
T Consensus 118 ~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 118 FDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred eeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 57777766532 3678899999999999999765
No 302
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=40.45 E-value=40 Score=24.66 Aligned_cols=35 Identities=17% Similarity=-0.022 Sum_probs=25.5
Q ss_pred Cc--EEEEcccChHHHHHHHhhcc-CCcEEEEEecCCC
Q psy12355 1 MM--LYLDPLGTENCLTLGINVTK-MGGKLMLVGMGPQ 35 (112)
Q Consensus 1 ~D--~v~d~~g~~~~~~~~~~~l~-~~G~iv~~g~~~~ 35 (112)
+| +|+||+|.=..-..+.+-|. .|.+=|++..|.+
T Consensus 225 vd~aiVID~TG~f~~~~~~~~HL~~~GakkViiSAP~k 262 (477)
T PRK08289 225 INNALVVDNTGKWRDEEGLSQHLKSKGVAKVLLTAPGK 262 (477)
T ss_pred CCeEEEEeCccccCCHHHHhhchhccCCCEEEECCCCC
Confidence 47 99999997655666777777 6777777766543
No 303
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=40.15 E-value=61 Score=21.92 Aligned_cols=20 Identities=10% Similarity=-0.039 Sum_probs=17.0
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
+-+..+-++|+++|.++..+
T Consensus 171 eFy~~~~~~L~~~Gi~v~q~ 190 (282)
T COG0421 171 EFYEGCRRALKEDGIFVAQA 190 (282)
T ss_pred HHHHHHHHhcCCCcEEEEec
Confidence 45788899999999999883
No 304
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=39.82 E-value=65 Score=20.07 Aligned_cols=18 Identities=33% Similarity=0.311 Sum_probs=10.7
Q ss_pred HHHHHHhhccCCcEEEEE
Q psy12355 13 CLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~ 30 (112)
.+..+.+.|++||++...
T Consensus 114 ~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 114 FLKEYANVLKKGGVIHFK 131 (194)
T ss_pred HHHHHHHHhCCCCEEEEE
Confidence 455566666666666554
No 305
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=39.49 E-value=47 Score=22.02 Aligned_cols=31 Identities=13% Similarity=0.179 Sum_probs=23.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
.|+++||.+..+.-+...+.|+.|=.++.++
T Consensus 61 ~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~S 91 (255)
T COG1712 61 VDLVVEAASPEAVREYVPKILKAGIDVIVMS 91 (255)
T ss_pred cceeeeeCCHHHHHHHhHHHHhcCCCEEEEe
Confidence 4899999977777777888888876665554
No 306
>PRK08324 short chain dehydrogenase; Validated
Probab=39.39 E-value=45 Score=25.31 Aligned_cols=20 Identities=15% Similarity=0.426 Sum_probs=13.7
Q ss_pred HHHHHhhccC---CcEEEEEecC
Q psy12355 14 LTLGINVTKM---GGKLMLVGMG 33 (112)
Q Consensus 14 ~~~~~~~l~~---~G~iv~~g~~ 33 (112)
+..+++.+++ +|+++.++..
T Consensus 537 ~~~~~~~l~~~~~~g~iV~vsS~ 559 (681)
T PRK08324 537 AREAVRIMKAQGLGGSIVFIASK 559 (681)
T ss_pred HHHHHHHHHhcCCCcEEEEECCc
Confidence 4445666666 6899999853
No 307
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=39.18 E-value=48 Score=20.96 Aligned_cols=28 Identities=18% Similarity=-0.039 Sum_probs=18.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLM 28 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv 28 (112)
+|+|++|+.+..+....-+..+..+.-.
T Consensus 112 ~D~Vi~~~d~~~~r~~l~~~~~~~~ip~ 139 (202)
T TIGR02356 112 VDLVLDCTDNFATRYLINDACVALGTPL 139 (202)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHcCCCE
Confidence 6899999987665444445555555533
No 308
>KOG0169|consensus
Probab=38.74 E-value=1.1e+02 Score=23.82 Aligned_cols=59 Identities=10% Similarity=-0.106 Sum_probs=38.4
Q ss_pred ChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCeeEEeEe-c-cCCCHHHHHHHHHcCCCCCcc
Q psy12355 10 TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCF-R-YVNDYPDALEMVASGKCPVRK 77 (112)
Q Consensus 10 ~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~-~-~~~~~~~~~~~~~~g~~~~~~ 77 (112)
++....-.+++|++|.|++.+-.++++. .+..+.-.+ . ..-.++++++.+.+.-+...+
T Consensus 315 g~sSvegyI~ALk~GcR~vElD~Wdg~~---------~epvV~HG~TlTs~I~l~~vl~aIk~~AF~~S~ 375 (746)
T KOG0169|consen 315 GPSSVEGYIRALKKGCRCVELDCWDGPN---------GEPVVYHGHTLTSKILLRDVLRAIKKYAFVTSP 375 (746)
T ss_pred CccccHHHHHHHHhCCeEEEEecccCCC---------CCeeEecCcccccceeHHHHHHHHHHhcccCCC
Confidence 3445677899999999999998766533 122222111 1 225688888888888775544
No 309
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=38.24 E-value=41 Score=21.91 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=17.2
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.+.|+|||+++.+-.
T Consensus 130 ~~l~~~~~~LkpgG~l~i~~~ 150 (255)
T PRK11036 130 SVLQTLWSVLRPGGALSLMFY 150 (255)
T ss_pred HHHHHHHHHcCCCeEEEEEEE
Confidence 457889999999999987643
No 310
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=38.16 E-value=30 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=17.3
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+....+.|+|+|.++..-.
T Consensus 96 ~~l~~l~~~LkpgG~l~~~~~ 116 (161)
T PF13489_consen 96 EFLKELSRLLKPGGYLVISDP 116 (161)
T ss_dssp HHHHHHHHCEEEEEEEEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEEEc
Confidence 467888899999999887753
No 311
>PRK14968 putative methyltransferase; Provisional
Probab=38.07 E-value=42 Score=20.30 Aligned_cols=18 Identities=28% Similarity=0.346 Sum_probs=15.2
Q ss_pred HHHHHHhhccCCcEEEEE
Q psy12355 13 CLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~ 30 (112)
.+.++.+.|+++|.++.+
T Consensus 130 ~i~~~~~~Lk~gG~~~~~ 147 (188)
T PRK14968 130 FLDEVGRYLKPGGRILLL 147 (188)
T ss_pred HHHHHHHhcCCCeEEEEE
Confidence 478888999999998765
No 312
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=37.94 E-value=41 Score=20.76 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=23.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+||-++|.+..+.. +.++++-.++.+|.+.
T Consensus 88 aDiVIsat~~~~ii~~--~~~~~~~viIDla~pr 119 (168)
T cd01080 88 ADIVIVAVGKPGLVKG--DMVKPGAVVIDVGINR 119 (168)
T ss_pred CCEEEEcCCCCceecH--HHccCCeEEEEccCCC
Confidence 6999999998775443 3567776677777655
No 313
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=37.84 E-value=89 Score=19.90 Aligned_cols=51 Identities=12% Similarity=0.121 Sum_probs=31.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcC-eeE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKE-IDI 51 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~l 51 (112)
+|+|+-+++.++.-.......+..|..+.+....+...|-++..+.++ +.+
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f~~pa~~~~g~l~i 121 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSFIFPSIVDRSPVVV 121 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeEEEeeEEEcCCEEE
Confidence 478888888876556677777788888876543333334444444444 444
No 314
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=37.82 E-value=48 Score=20.91 Aligned_cols=21 Identities=24% Similarity=0.276 Sum_probs=17.5
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.+.|+|+|+++....
T Consensus 85 ~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 85 DLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred HHHHHHHHHcCCCCEEEEEEc
Confidence 457788899999999998764
No 315
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=37.78 E-value=44 Score=20.59 Aligned_cols=31 Identities=3% Similarity=0.006 Sum_probs=19.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~g 31 (112)
+|+|+||+.+..+-....+.+.+. +.-...+
T Consensus 89 ~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~ 120 (174)
T cd01487 89 CDIVVEAFDNAETKAMLAESLLGNKNKPVVCA 120 (174)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 689999987776544344444443 6554444
No 316
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=37.29 E-value=46 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.138 Sum_probs=17.9
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+....+.|+|||.+++...
T Consensus 145 ~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 145 ALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred HHHHHHHHhcCCCCEEEEEEe
Confidence 468889999999999998863
No 317
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=37.01 E-value=44 Score=22.12 Aligned_cols=23 Identities=26% Similarity=0.566 Sum_probs=18.6
Q ss_pred HHHHHHhhccCCcEEEEEecCCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
....+.+.++.+||++.+|....
T Consensus 38 av~~~~~~l~~ggrl~~~GaGtS 60 (257)
T cd05007 38 AVDAAAERLRAGGRLIYVGAGTS 60 (257)
T ss_pred HHHHHHHHHHcCCEEEEEcCcHH
Confidence 45677889999999999996553
No 318
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=36.87 E-value=38 Score=23.60 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=16.0
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
.+..+++.+++||+++.--
T Consensus 270 iL~~a~~~lk~GG~LVYST 288 (355)
T COG0144 270 ILAAALKLLKPGGVLVYST 288 (355)
T ss_pred HHHHHHHhcCCCCEEEEEc
Confidence 5788999999999988654
No 319
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=36.32 E-value=27 Score=20.15 Aligned_cols=18 Identities=22% Similarity=0.279 Sum_probs=14.9
Q ss_pred HHHHHHhhccCCcEEEEE
Q psy12355 13 CLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~ 30 (112)
.+......|+|||.+++=
T Consensus 26 ~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 26 FFRRIYSLLRPGGILILE 43 (110)
T ss_dssp HHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHhhCCCCEEEEe
Confidence 467778899999998865
No 320
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=36.06 E-value=54 Score=21.08 Aligned_cols=28 Identities=21% Similarity=-0.032 Sum_probs=18.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLM 28 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv 28 (112)
+|+|++|+.+..+....-+..+..+.-.
T Consensus 112 ~DvVi~~~d~~~~r~~l~~~~~~~~ip~ 139 (228)
T cd00757 112 YDLVLDCTDNFATRYLINDACVKLGKPL 139 (228)
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHcCCCE
Confidence 6999999988776444455555555433
No 321
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=35.94 E-value=53 Score=22.30 Aligned_cols=22 Identities=27% Similarity=0.585 Sum_probs=17.9
Q ss_pred HHHHHHhhccCCcEEEEEecCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
++......++.|||++.+|...
T Consensus 49 Av~~~~~~l~~GGRLiY~GAGT 70 (298)
T COG2103 49 AVDIIAAALKQGGRLIYIGAGT 70 (298)
T ss_pred HHHHHHHHHHcCCeEEEEcCCc
Confidence 4666778899999999999644
No 322
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=35.90 E-value=60 Score=21.74 Aligned_cols=25 Identities=8% Similarity=-0.027 Sum_probs=20.1
Q ss_pred HHHHHHHhhccCCcEEEEEecCCCc
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGPQM 36 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~~~ 36 (112)
...+...++|..|.|.+.+-..+++
T Consensus 30 ss~e~y~~aL~~GcRcvElD~Wdg~ 54 (257)
T cd08591 30 SSVEMYRQVLLSGCRCIELDCWDGK 54 (257)
T ss_pred ccHHHHHHHHHhCCcEEEEEeecCC
Confidence 3467788999999999999876653
No 323
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=35.82 E-value=53 Score=21.20 Aligned_cols=59 Identities=19% Similarity=0.255 Sum_probs=36.2
Q ss_pred hhhcCeeEEeEeccCCCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEE
Q psy12355 44 ACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107 (112)
Q Consensus 44 ~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~ 107 (112)
.+.|+..-.++..+.+....+++.++.|.+++. .+|-.++.++|..-+.+=..+..+|+
T Consensus 17 ~H~KGfDqF~s~~y~~GAd~Ll~~Lr~g~~dv~-----yMpAH~~q~~FPqtme~L~~YDaivl 75 (254)
T COG5426 17 THSKGFDQFTSVTYHEGADPLLKALRGGEYDVT-----YMPAHDAQEKFPQTMEGLDAYDAIVL 75 (254)
T ss_pred eeccccccCcceecccCchHHHHHHhCCCcceE-----EechHHHHHhcchhhhhhcccceEEE
Confidence 455555555555555667889999999988763 45666666666554443323333443
No 324
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=35.79 E-value=35 Score=20.75 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=17.8
Q ss_pred HHHHHHhhccCCcEEEEEecCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
.+..+.+.|+++|++..+....
T Consensus 122 ~i~~a~~~Lk~~G~l~lv~~~~ 143 (170)
T PF05175_consen 122 FIEQARRYLKPGGRLFLVINSH 143 (170)
T ss_dssp HHHHHHHHEEEEEEEEEEEETT
T ss_pred HHHHHHHhccCCCEEEEEeecC
Confidence 4778889999999998876543
No 325
>PRK06046 alanine dehydrogenase; Validated
Probab=35.54 E-value=37 Score=23.23 Aligned_cols=40 Identities=8% Similarity=0.062 Sum_probs=27.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccCh
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPL 41 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~ 41 (112)
+|+|+.|+++...+- .-+.+++|-++..+|.+.. ..+++.
T Consensus 194 aDiVv~aTps~~P~~-~~~~l~~g~hV~~iGs~~p~~~El~~ 234 (326)
T PRK06046 194 CDILVTTTPSRKPVV-KAEWIKEGTHINAIGADAPGKQELDP 234 (326)
T ss_pred CCEEEEecCCCCcEe-cHHHcCCCCEEEecCCCCCccccCCH
Confidence 589999998765432 2457899999999996543 445553
No 326
>KOG3674|consensus
Probab=35.28 E-value=26 Score=25.95 Aligned_cols=29 Identities=17% Similarity=0.287 Sum_probs=21.4
Q ss_pred cEEEEcccChH------------HHHHHHhhccCCcEEEEE
Q psy12355 2 MLYLDPLGTEN------------CLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 2 D~v~d~~g~~~------------~~~~~~~~l~~~G~iv~~ 30 (112)
|--+||-|.+. -+..|++.|+.||+++.=
T Consensus 233 DGS~dcqg~pgeqE~iVssL~~aEV~~AL~~L~~gG~filK 273 (696)
T KOG3674|consen 233 DGSTDCQGKPGEQESIVSSLISAEVEVALKLLRRGGRFILK 273 (696)
T ss_pred CCccccCCCCccHHHHHHHHHHHHHHHHHHHHhcCCeehHH
Confidence 45577887663 356789999999998753
No 327
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=35.08 E-value=36 Score=23.07 Aligned_cols=41 Identities=5% Similarity=-0.164 Sum_probs=28.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccChh
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPLV 42 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~ 42 (112)
+|+|+-|+++...+- -.+.++||-++..+|.+.. ..+++..
T Consensus 183 aDIV~taT~s~~P~~-~~~~l~pg~hV~aiGs~~p~~~El~~~ 224 (301)
T PRK06407 183 ADTITSITNSDTPIF-NRKYLGDEYHVNLAGSNYPNRREAEHS 224 (301)
T ss_pred CCEEEEecCCCCcEe-cHHHcCCCceEEecCCCCCCcccCCHH
Confidence 589998887765432 2468899888999996553 5556543
No 328
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=35.01 E-value=60 Score=22.42 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=15.3
Q ss_pred HHHHHHHhhccCCcEEEEE
Q psy12355 12 NCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~ 30 (112)
..+.+.-++|++||.+++=
T Consensus 200 ~~L~~Lk~~L~~gGeLvLE 218 (315)
T PF08003_consen 200 DHLKQLKDSLRPGGELVLE 218 (315)
T ss_pred HHHHHHHHhhCCCCEEEEE
Confidence 3577888899999999843
No 329
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=35.00 E-value=53 Score=22.49 Aligned_cols=40 Identities=8% Similarity=0.059 Sum_probs=26.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccCh
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPL 41 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~ 41 (112)
+|+|+.|+++...+- --+.++++-.+..+|.... +.+++.
T Consensus 195 aDiVvtaT~s~~p~i-~~~~l~~g~~i~~vg~~~p~~rEld~ 235 (326)
T TIGR02992 195 ADIIVTTTPSETPIL-HAEWLEPGQHVTAMGSDAEHKNEIDP 235 (326)
T ss_pred CCEEEEecCCCCcEe-cHHHcCCCcEEEeeCCCCCCceecCH
Confidence 599999997755322 2346888888888885432 344443
No 330
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=34.88 E-value=34 Score=21.89 Aligned_cols=31 Identities=10% Similarity=0.030 Sum_probs=22.0
Q ss_pred CcEEEEcccChHH-HHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENC-LTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~-~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+.- +. -+.+++|..++.+|..
T Consensus 127 ADIVIsAvG~~~~~i~--~d~ik~GavVIDVGi~ 158 (197)
T cd01079 127 SDVVITGVPSPNYKVP--TELLKDGAICINFASI 158 (197)
T ss_pred CCEEEEccCCCCCccC--HHHcCCCcEEEEcCCC
Confidence 5788888877663 23 5677888888888754
No 331
>PRK08291 ectoine utilization protein EutC; Validated
Probab=34.81 E-value=53 Score=22.51 Aligned_cols=39 Identities=8% Similarity=0.063 Sum_probs=24.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVP 40 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~ 40 (112)
+|+|+.|++....+-.. +.++++-.+..+|.... +.+++
T Consensus 198 aDiVi~aT~s~~p~i~~-~~l~~g~~v~~vg~d~~~~rEld 237 (330)
T PRK08291 198 ADIIVTTTPSEEPILKA-EWLHPGLHVTAMGSDAEHKNEIA 237 (330)
T ss_pred CCEEEEeeCCCCcEecH-HHcCCCceEEeeCCCCCCcccCC
Confidence 58999998776543222 45788878888875432 34444
No 332
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=34.69 E-value=52 Score=21.42 Aligned_cols=19 Identities=11% Similarity=0.067 Sum_probs=16.0
Q ss_pred HHHHHHHhhccCCcEEEEE
Q psy12355 12 NCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~ 30 (112)
..+..+.+.|+|||+++..
T Consensus 107 ~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 107 DLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred HHHHHHHHhCCCCcEEEEE
Confidence 4577889999999999875
No 333
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.57 E-value=42 Score=22.81 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=25.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+. -+.+++|..++.+|..
T Consensus 208 ADIvv~AvG~p~~i~--~~~vk~gavVIDvGin 238 (287)
T PRK14176 208 ADILVVATGVKHLIK--ADMVKEGAVIFDVGIT 238 (287)
T ss_pred CCEEEEccCCccccC--HHHcCCCcEEEEeccc
Confidence 689999999887553 4589999999999864
No 334
>KOG4589|consensus
Probab=34.54 E-value=76 Score=20.53 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=21.4
Q ss_pred cEEEEcccChHHHHH-HHhhccCCcEEEEEe
Q psy12355 2 MLYLDPLGTENCLTL-GINVTKMGGKLMLVG 31 (112)
Q Consensus 2 D~v~d~~g~~~~~~~-~~~~l~~~G~iv~~g 31 (112)
|.|+||..+|..|.| +.+-..|.|.+.-+-
T Consensus 71 ~~VlD~G~APGsWsQVavqr~~p~g~v~gVD 101 (232)
T KOG4589|consen 71 DTVLDCGAAPGSWSQVAVQRVNPNGMVLGVD 101 (232)
T ss_pred CEEEEccCCCChHHHHHHHhhCCCceEEEEe
Confidence 678888767766776 566667888876554
No 335
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=34.38 E-value=48 Score=20.23 Aligned_cols=22 Identities=18% Similarity=0.211 Sum_probs=16.3
Q ss_pred HHHHHHhhccCCcEEEEEecCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
.+..++..+.+||.|.++|-..
T Consensus 87 lL~~l~~~L~~g~~i~vVGEnk 108 (155)
T PF08468_consen 87 LLANLLSHLPPGTEIFVVGENK 108 (155)
T ss_dssp HHHHHHTTS-TT-EEEEEEEGG
T ss_pred HHHHHHHhCCCCCEEEEEecCc
Confidence 5777888999999999999433
No 336
>KOG3923|consensus
Probab=34.17 E-value=26 Score=24.22 Aligned_cols=32 Identities=13% Similarity=0.125 Sum_probs=19.6
Q ss_pred CcEEEEcccChH-HHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTEN-CLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~-~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+|++|+|-.. .+.---.+-.-.|.++.+-.
T Consensus 184 ~DVivNCtGL~a~~L~gDd~~yPiRGqVl~V~A 216 (342)
T KOG3923|consen 184 YDVIVNCTGLGAGKLAGDDDLYPIRGQVLKVDA 216 (342)
T ss_pred CcEEEECCccccccccCCcceeeccceEEEeeC
Confidence 699999998643 12212224455687777754
No 337
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=34.12 E-value=43 Score=22.85 Aligned_cols=31 Identities=19% Similarity=0.340 Sum_probs=26.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+. -+.+++|..++.+|..
T Consensus 205 ADIvIsAvGkp~~i~--~~~vk~gavVIDvGin 235 (293)
T PRK14185 205 ADIIIAALGQPEFVK--ADMVKEGAVVIDVGTT 235 (293)
T ss_pred CCEEEEccCCcCccC--HHHcCCCCEEEEecCc
Confidence 699999999988554 4789999999999964
No 338
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.50 E-value=49 Score=22.38 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 202 ADIvIsAvGkp~~i~--~~~ik~gavVIDvGin~ 233 (278)
T PRK14172 202 ADILVVAIGRPKFID--EEYVKEGAIVIDVGTSS 233 (278)
T ss_pred CCEEEEcCCCcCccC--HHHcCCCcEEEEeeccc
Confidence 589999999887555 45699999999998643
No 339
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=33.15 E-value=70 Score=20.97 Aligned_cols=31 Identities=16% Similarity=-0.033 Sum_probs=19.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+|++|+.+..+....-+..+..+.-.+.|
T Consensus 123 ~DiVi~~~D~~~~r~~ln~~~~~~~ip~v~~ 153 (245)
T PRK05690 123 HDLVLDCTDNVATRNQLNRACFAAKKPLVSG 153 (245)
T ss_pred CCEEEecCCCHHHHHHHHHHHHHhCCEEEEe
Confidence 6999999987765444444555555544443
No 340
>PLN02929 NADH kinase
Probab=33.14 E-value=83 Score=21.60 Aligned_cols=73 Identities=15% Similarity=0.208 Sum_probs=39.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcCee---EEeEecc--CCCHHHHHHHHHcCCCCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEID---ILSCFRY--VNDYPDALEMVASGKCPV 75 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~---l~g~~~~--~~~~~~~~~~~~~g~~~~ 75 (112)
+|+|+ +.|+.-++-.+.+.+ ..+ +=++|...++...+-...+..+.. -.|+.+. .+++.+.++.+.+|...+
T Consensus 65 ~Dlvi-~lGGDGT~L~aa~~~-~~~-iPvlGIN~Gp~~~~~~~~~~~~~~~~r~lGfL~~~~~~~~~~~L~~il~g~~~~ 141 (301)
T PLN02929 65 VDLVV-AVGGDGTLLQASHFL-DDS-IPVLGVNSDPTQKDEVEEYSDEFDARRSTGHLCAATAEDFEQVLDDVLFGRLKP 141 (301)
T ss_pred CCEEE-EECCcHHHHHHHHHc-CCC-CcEEEEECCCcccccccccccccccccCccccccCCHHHHHHHHHHHHcCCceE
Confidence 36666 567777777787777 333 334554333211111112222222 2344332 277889999999997654
Q ss_pred c
Q psy12355 76 R 76 (112)
Q Consensus 76 ~ 76 (112)
.
T Consensus 142 ~ 142 (301)
T PLN02929 142 T 142 (301)
T ss_pred E
Confidence 3
No 341
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=33.05 E-value=72 Score=20.81 Aligned_cols=26 Identities=8% Similarity=-0.045 Sum_probs=17.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGK 26 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~ 26 (112)
+|+|+||..+...-....+..+..+.
T Consensus 103 ~D~VvdaiD~~~~k~~L~~~c~~~~i 128 (231)
T cd00755 103 PDFVVDAIDSIRAKVALIAYCRKRKI 128 (231)
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHhCC
Confidence 68999999876655555555555554
No 342
>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type. This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.
Probab=32.62 E-value=40 Score=23.12 Aligned_cols=40 Identities=5% Similarity=0.052 Sum_probs=27.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccCh
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPL 41 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~ 41 (112)
+|+|+-|+++...+- --+.+++|-.+..+|.+.. ..+++.
T Consensus 193 aDiVitaT~s~~P~~-~~~~l~~g~~v~~vGs~~p~~~Eld~ 233 (325)
T TIGR02371 193 CDILVTTTPSRKPVV-KADWVSEGTHINAIGADAPGKQELDP 233 (325)
T ss_pred CCEEEEecCCCCcEe-cHHHcCCCCEEEecCCCCcccccCCH
Confidence 589999887655322 2467899999999996543 444443
No 343
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=32.61 E-value=92 Score=22.02 Aligned_cols=31 Identities=23% Similarity=0.454 Sum_probs=23.5
Q ss_pred CcEE-EEcccCh-HHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLY-LDPLGTE-NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v-~d~~g~~-~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+| +|.=|.+ .-+..++++++++|-+.+..
T Consensus 115 fDvIdlDPfGs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 115 FHVIDIDPFGTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred CCEEEeCCCCCcHHHHHHHHHhcccCCEEEEEe
Confidence 4666 5776663 45788999999999988874
No 344
>PRK09716 hypothetical protein; Provisional
Probab=32.50 E-value=28 Score=23.06 Aligned_cols=24 Identities=21% Similarity=0.296 Sum_probs=18.8
Q ss_pred HHHHHhhccCCcEEEEEecCCCcc
Q psy12355 14 LTLGINVTKMGGKLMLVGMGPQMV 37 (112)
Q Consensus 14 ~~~~~~~l~~~G~iv~~g~~~~~~ 37 (112)
+-..+..|.|||+++..|...+..
T Consensus 49 mvtlln~lqpggkciitgdfqkel 72 (395)
T PRK09716 49 MVTLLNTLQPGGKCIITGDFQKEL 72 (395)
T ss_pred HHHHHHhcCCCCeEEEeCcHHHHH
Confidence 455788899999999999766543
No 345
>PRK06392 homoserine dehydrogenase; Provisional
Probab=32.18 E-value=71 Score=22.07 Aligned_cols=29 Identities=17% Similarity=0.052 Sum_probs=16.6
Q ss_pred CcEEEEcccCh----HHHHHHHhhccCCcEEEE
Q psy12355 1 MMLYLDPLGTE----NCLTLGINVTKMGGKLML 29 (112)
Q Consensus 1 ~D~v~d~~g~~----~~~~~~~~~l~~~G~iv~ 29 (112)
+|+++||+++. .......++|+.|=.+|.
T Consensus 82 ~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVT 114 (326)
T PRK06392 82 PDVIVDVTPASKDGIREKNLYINAFEHGIDVVT 114 (326)
T ss_pred CCEEEECCCCCCcCchHHHHHHHHHHCCCEEEc
Confidence 48999999632 134444555555544443
No 346
>PLN02700 homoserine dehydrogenase family protein
Probab=32.06 E-value=81 Score=22.40 Aligned_cols=28 Identities=11% Similarity=0.157 Sum_probs=18.5
Q ss_pred cEEEEcccChHHHHHHHhhccCCcEEEE
Q psy12355 2 MLYLDPLGTENCLTLGINVTKMGGKLML 29 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~ 29 (112)
++++||+++..+.....++|+.|=++|.
T Consensus 111 ~ViVD~T~s~~~~~~y~~aL~~G~hVVT 138 (377)
T PLN02700 111 LVVVDCSASMETIGALNEAVDLGCCIVL 138 (377)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCeEEc
Confidence 6889999876655555556666555543
No 347
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=32.05 E-value=53 Score=22.53 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=19.4
Q ss_pred HHHHHHhhccCCcEEEEEecCCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
-+.++++++.+||.|+.+|...+
T Consensus 55 qLa~ll~~~~~g~~i~v~g~~~~ 77 (300)
T COG2813 55 QLAQLLARLPPGGEIVVVGEKRD 77 (300)
T ss_pred HHHHHHhhCCCCCeEEEEecccc
Confidence 47789999999999999996553
No 348
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=31.82 E-value=75 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.225 Sum_probs=17.5
Q ss_pred HHHHHHHhhccCCcEEEEEec
Q psy12355 12 NCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~ 32 (112)
..+..+.+.|+|||++++.-.
T Consensus 350 ~~l~~~~r~LkpgG~l~i~~~ 370 (475)
T PLN02336 350 ALFRSFFKWLKPGGKVLISDY 370 (475)
T ss_pred HHHHHHHHHcCCCeEEEEEEe
Confidence 467889999999999987653
No 349
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=31.56 E-value=2e+02 Score=20.77 Aligned_cols=87 Identities=9% Similarity=0.034 Sum_probs=46.2
Q ss_pred ccChHHHHHHHhhccCCcEEEEEecCCC-----ccccChhhhhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCC----cc
Q psy12355 8 LGTENCLTLGINVTKMGGKLMLVGMGPQ-----MVSVPLVNACAKEIDILSCFRYV-NDYPDALEMVASGKCPV----RK 77 (112)
Q Consensus 8 ~g~~~~~~~~~~~l~~~G~iv~~g~~~~-----~~~~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~----~~ 77 (112)
+|+++.+.-.+.++.||.++.-...+.+ ..++++...+++.+.+---.... -++.++.+.+.+.+-++ ..
T Consensus 96 SGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e~kPK~ii~G~S 175 (413)
T COG0112 96 SGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKEVKPKLIIAGGS 175 (413)
T ss_pred CchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHHhCCCEEEECcc
Confidence 5777777888899999999887765432 12333322222222211111111 47888888888764321 01
Q ss_pred ceeeeeCcccHHHHHHH
Q psy12355 78 LITHNFKLEEAVEAFKT 94 (112)
Q Consensus 78 ~~~~~~~l~~~~~a~~~ 94 (112)
.....+++.+..+..+.
T Consensus 176 aY~r~id~~~~reIad~ 192 (413)
T COG0112 176 AYSRPIDFKRFREIADE 192 (413)
T ss_pred ccccccCHHHHHHHHHH
Confidence 11234455665555544
No 350
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=31.45 E-value=44 Score=23.37 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 258 ADIvIsAvGkp~~v~--~d~vk~GavVIDVGin~ 289 (345)
T PLN02897 258 ADIVIAAAGIPNLVR--GSWLKPGAVVIDVGTTP 289 (345)
T ss_pred CCEEEEccCCcCccC--HHHcCCCCEEEEccccc
Confidence 699999999887544 67899999999999643
No 351
>PF11079 YqhG: Bacterial protein YqhG of unknown function; InterPro: IPR024562 This family of putative proteins appears to be restricted to Firmicutes. Their function is not known.
Probab=31.21 E-value=1.7e+02 Score=19.75 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=28.4
Q ss_pred cChHHHHHHHhhccCCcEEEEEec-CCC--ccccChhhhhhcCeeEEeEe
Q psy12355 9 GTENCLTLGINVTKMGGKLMLVGM-GPQ--MVSVPLVNACAKEIDILSCF 55 (112)
Q Consensus 9 g~~~~~~~~~~~l~~~G~iv~~g~-~~~--~~~~~~~~~~~~~~~l~g~~ 55 (112)
|++- +.+.+++++++|+++.+-= ... ....+...++.-++.+...+
T Consensus 84 GSpR-L~QIF~sa~~~GrfvrLyE~~~~~~~~~~pL~PWL~vN~KVsy~c 132 (260)
T PF11079_consen 84 GSPR-LHQIFQSAKKLGRFVRLYEQPPTAGGRSTPLTPWLGVNVKVSYQC 132 (260)
T ss_pred CChh-HHHHHHHHHhcCCEEEEEeccCCCCCCCccccceeEEeEEEEEee
Confidence 4544 8999999999999997741 111 12344445555555555443
No 352
>PRK09485 mmuM homocysteine methyltransferase; Provisional
Probab=31.20 E-value=1.7e+02 Score=19.87 Aligned_cols=21 Identities=10% Similarity=0.029 Sum_probs=15.1
Q ss_pred EEEEcccChHHHHHHHhhccCC
Q psy12355 3 LYLDPLGTENCLTLGINVTKMG 24 (112)
Q Consensus 3 ~v~d~~g~~~~~~~~~~~l~~~ 24 (112)
+-++|+ .+..+..+++.++..
T Consensus 218 iGiNC~-~p~~~~~~l~~~~~~ 238 (304)
T PRK09485 218 VGVNCT-APELVTAAIAALRAV 238 (304)
T ss_pred EEecCC-CHHHHHHHHHHHHhc
Confidence 347898 577778888777654
No 353
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=31.15 E-value=52 Score=24.01 Aligned_cols=19 Identities=21% Similarity=0.321 Sum_probs=15.3
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
.+..++++|++||++|.--
T Consensus 224 iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 224 LIESAFHALKPGGTLVYST 242 (470)
T ss_pred HHHHHHHHcCCCcEEEEEC
Confidence 5778899999999986443
No 354
>COG1432 Uncharacterized conserved protein [Function unknown]
Probab=31.09 E-value=1.1e+02 Score=19.07 Aligned_cols=33 Identities=12% Similarity=0.212 Sum_probs=19.8
Q ss_pred CcEEEEcccChHHHHHHHhhc-cCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVT-KMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l-~~~G~iv~~g~~~ 34 (112)
+|.++-++|-.. +..+++.+ ..|+++.++|...
T Consensus 111 ~D~ivl~SgD~D-F~p~v~~~~~~G~rv~v~~~~~ 144 (181)
T COG1432 111 VDTIVLFSGDGD-FIPLVEAARDKGKRVEVAGIEP 144 (181)
T ss_pred CCEEEEEcCCcc-HHHHHHHHHHcCCEEEEEecCC
Confidence 467777776554 56666666 4455555665433
No 355
>PHA00743 helix-turn-helix protein
Probab=30.88 E-value=28 Score=16.96 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHH
Q psy12355 59 NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTA 95 (112)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~ 95 (112)
.+.++++..+.+=+++. ++..++=+.+++|+-..
T Consensus 6 ~~iReLLs~iheIKID~---i~~~~~k~kvekAl~Ls 39 (51)
T PHA00743 6 EDVRELLSIIHEIKIDI---ITQSYDKEKIEKAIFLS 39 (51)
T ss_pred HHHHHHHHHHHHHhhhh---hcccCCHHHHHHHHHHH
Confidence 35678888888877765 56678888888887543
No 356
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=30.76 E-value=1.6e+02 Score=19.29 Aligned_cols=53 Identities=8% Similarity=-0.212 Sum_probs=29.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhhhhhcC-eeEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKE-IDILS 53 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~-~~l~g 53 (112)
+++||-|++.++.-....+..+..|.++......+...|-++.+..++ +++.-
T Consensus 86 ~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~~dFi~PAiv~rg~l~IaI 139 (223)
T PRK05562 86 KHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKKGLCIIPYQRSTKNFVFAL 139 (223)
T ss_pred CcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCcccCeEEeeeEEecCCEEEEE
Confidence 478899997766444444555555777776533333334344444443 44433
No 357
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=30.61 E-value=83 Score=24.75 Aligned_cols=29 Identities=7% Similarity=-0.012 Sum_probs=20.4
Q ss_pred cEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 2 MLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
|+++||+++........++|+.|=++|..
T Consensus 549 ~vvvd~t~~~~~~~~~~~al~~g~~VVta 577 (819)
T PRK09436 549 PVIVDCTSSQAVADQYADFLAAGFHVVTP 577 (819)
T ss_pred CEEEECCCChHHHHHHHHHHHcCCEEEcC
Confidence 78999998876666666677766555543
No 358
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.43 E-value=52 Score=22.31 Aligned_cols=32 Identities=16% Similarity=0.296 Sum_probs=25.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 200 ADIvI~AvG~p~~i~--~~~vk~GavVIDvGin~ 231 (282)
T PRK14169 200 ADILVVAVGVPHFIG--ADAVKPGAVVIDVGISR 231 (282)
T ss_pred CCEEEEccCCcCccC--HHHcCCCcEEEEeeccc
Confidence 589999999887544 56899999999999643
No 359
>PRK01581 speE spermidine synthase; Validated
Probab=30.42 E-value=96 Score=22.05 Aligned_cols=20 Identities=5% Similarity=-0.062 Sum_probs=16.4
Q ss_pred HHHHHHhhccCCcEEEEEec
Q psy12355 13 CLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~ 32 (112)
-+..+.+.|+++|.++....
T Consensus 250 Fy~~~~~~LkPgGV~V~Qs~ 269 (374)
T PRK01581 250 LFARIATFLTEDGAFVCQSN 269 (374)
T ss_pred HHHHHHHhcCCCcEEEEecC
Confidence 46778889999999887754
No 360
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=30.37 E-value=98 Score=21.42 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=24.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+|+-|++.....+.+..+++.|-+++..+.
T Consensus 69 vD~Vf~alP~~~~~~~v~~a~~aG~~VID~S~ 100 (343)
T PRK00436 69 ADVVFLALPHGVSMDLAPQLLEAGVKVIDLSA 100 (343)
T ss_pred CCEEEECCCcHHHHHHHHHHHhCCCEEEECCc
Confidence 58999999887776767777776666777763
No 361
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=30.33 E-value=1.2e+02 Score=21.49 Aligned_cols=15 Identities=7% Similarity=-0.057 Sum_probs=10.9
Q ss_pred CcccHHHHHHHHhcC
Q psy12355 84 KLEEAVEAFKTASKK 98 (112)
Q Consensus 84 ~l~~~~~a~~~~~~~ 98 (112)
..+|+.+++..+.+.
T Consensus 416 ~p~dva~~~~~l~s~ 430 (450)
T PRK08261 416 LPVDVAETIAWLASP 430 (450)
T ss_pred CHHHHHHHHHHHhCh
Confidence 457888888887653
No 362
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=30.28 E-value=76 Score=20.77 Aligned_cols=31 Identities=6% Similarity=-0.121 Sum_probs=19.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+|+||+.+..+....-+.....|.=...|
T Consensus 115 ~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 115 HDIVVDCTDNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 6999999988775444444555555533333
No 363
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=30.10 E-value=52 Score=22.30 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=25.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+. -+.+++|..++.+|..
T Consensus 202 ADIvIsAvGkp~~i~--~~~vk~gavVIDvGin 232 (282)
T PRK14180 202 ADILIVAVGKPNFIT--ADMVKEGAVVIDVGIN 232 (282)
T ss_pred cCEEEEccCCcCcCC--HHHcCCCcEEEEeccc
Confidence 589999999887544 4789999999999864
No 364
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=30.04 E-value=69 Score=21.74 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=17.3
Q ss_pred HHHHHHhhccCCcEEEEEecCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
....+.+.++.+||++.+|...
T Consensus 46 av~~~~~~l~~gGrl~~~G~G~ 67 (291)
T TIGR00274 46 AVEQIVQAFQQGGRLIYIGAGT 67 (291)
T ss_pred HHHHHHHHHhcCCEEEEECCcH
Confidence 4555667889999999999654
No 365
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=30.03 E-value=90 Score=19.61 Aligned_cols=20 Identities=20% Similarity=0.270 Sum_probs=15.7
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
..+..+.+.|+++|.++...
T Consensus 130 ~~l~~~~~~L~~gG~l~i~~ 149 (224)
T TIGR01983 130 AFIRACAQLLKPGGILFFST 149 (224)
T ss_pred HHHHHHHHhcCCCcEEEEEe
Confidence 35677888999999988654
No 366
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.97 E-value=53 Score=22.33 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=24.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 205 ADIVI~AvG~p~li~--~~~vk~GavVIDVGi~~ 236 (286)
T PRK14184 205 ADFLFVAIGRPRFVT--ADMVKPGAVVVDVGINR 236 (286)
T ss_pred CCEEEEecCCCCcCC--HHHcCCCCEEEEeeeec
Confidence 589999999887554 35679999999998643
No 367
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=29.65 E-value=76 Score=20.31 Aligned_cols=30 Identities=7% Similarity=0.151 Sum_probs=17.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCC-cEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG-GKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~-G~iv~~ 30 (112)
+|+|+||+.+..+-....+.+... +.-.+.
T Consensus 118 ~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~ 148 (212)
T PRK08644 118 CDIVVEAFDNAETKAMLVETVLEHPGKKLVA 148 (212)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHhCCCCEEE
Confidence 689999987766534344444444 443333
No 368
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.64 E-value=50 Score=22.57 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=26.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 205 ADIvIsAvGkp~~i~--~~~ik~gaiVIDvGin~ 236 (297)
T PRK14167 205 ADIVVAAAGVPELID--GSMLSEGATVIDVGINR 236 (297)
T ss_pred CCEEEEccCCcCccC--HHHcCCCCEEEEccccc
Confidence 689999999988555 47899999999999543
No 369
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=29.63 E-value=1.1e+02 Score=19.17 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=14.3
Q ss_pred HHHHHhhccCCcEEEEEecCC
Q psy12355 14 LTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 14 ~~~~~~~l~~~G~iv~~g~~~ 34 (112)
++..-++++.||-++.+|.+.
T Consensus 91 ~~~l~~yV~~GGgLlmigG~~ 111 (177)
T PF07090_consen 91 LELLADYVRDGGGLLMIGGPR 111 (177)
T ss_dssp HHHHHHHHHTT-EEEEE-STT
T ss_pred HHHHHHHHHhCCEEEEEeChh
Confidence 455666778999999998654
No 370
>TIGR00377 ant_ant_sig anti-anti-sigma factor. This superfamily includes small (105-125 residue) proteins related to SpoIIAA of Bacillus subtilis, an anti-anti-sigma factor. SpoIIAA can bind to and inhibit the anti-sigma F factor SpoIIAB. Also, it can be phosphorylated by SpoIIAB on a Ser residue at position 59 of the seed alignment. A similar arrangement is inferred for RsbV, an anti-anti-sigma factor for sigma B. This Ser is fairly well conserved within a motif resembling MXS[STA]G[VIL]X[VIL][VILF] among homologous known or predicted anti-anti-sigma factors. Regions similar to SpoIIAA and apparently homologous, but differing considerably near the phosphorlated Ser of SpoIIAA, appear in a single copy in several longer proteins.
Probab=29.59 E-value=81 Score=17.16 Aligned_cols=8 Identities=63% Similarity=1.169 Sum_probs=3.0
Q ss_pred CcEEEEEe
Q psy12355 24 GGKLMLVG 31 (112)
Q Consensus 24 ~G~iv~~g 31 (112)
++++...|
T Consensus 75 ~~~~~l~~ 82 (108)
T TIGR00377 75 GGQLVLVS 82 (108)
T ss_pred CCEEEEEe
Confidence 33333333
No 371
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=29.56 E-value=1e+02 Score=21.37 Aligned_cols=32 Identities=13% Similarity=0.041 Sum_probs=24.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|++|-|++.....+.+-+++..|-+++..+.
T Consensus 69 ~DvVf~alP~~~s~~~~~~~~~~G~~VIDlS~ 100 (346)
T TIGR01850 69 ADVVFLALPHGVSAELAPELLAAGVKVIDLSA 100 (346)
T ss_pred CCEEEECCCchHHHHHHHHHHhCCCEEEeCCh
Confidence 58999999887766666666677777777763
No 372
>PRK08328 hypothetical protein; Provisional
Probab=29.37 E-value=86 Score=20.32 Aligned_cols=13 Identities=15% Similarity=0.110 Sum_probs=10.3
Q ss_pred CcEEEEcccChHH
Q psy12355 1 MMLYLDPLGTENC 13 (112)
Q Consensus 1 ~D~v~d~~g~~~~ 13 (112)
+|+|+||+.+..+
T Consensus 119 ~D~Vid~~d~~~~ 131 (231)
T PRK08328 119 VDVIVDCLDNFET 131 (231)
T ss_pred CCEEEECCCCHHH
Confidence 5899999977654
No 373
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=29.05 E-value=56 Score=22.21 Aligned_cols=31 Identities=13% Similarity=0.265 Sum_probs=24.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+. -+.+++|..++.+|..
T Consensus 201 ADIvV~AvG~p~~i~--~~~vk~GavVIDvGi~ 231 (285)
T PRK14191 201 ADIVCVGVGKPDLIK--ASMVKKGAVVVDIGIN 231 (285)
T ss_pred CCEEEEecCCCCcCC--HHHcCCCcEEEEeecc
Confidence 589999999887544 4577999999999863
No 374
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.94 E-value=60 Score=22.09 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=25.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 203 ADIvV~AvGkp~~i~--~~~vk~GavVIDvGin~ 234 (288)
T PRK14171 203 ADIVVAAIGSPLKLT--AEYFNPESIVIDVGINR 234 (288)
T ss_pred CCEEEEccCCCCccC--HHHcCCCCEEEEeeccc
Confidence 689999999887444 57899999999999643
No 375
>PRK06153 hypothetical protein; Provisional
Probab=28.62 E-value=96 Score=22.20 Aligned_cols=32 Identities=16% Similarity=0.166 Sum_probs=20.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcE-EEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGK-LMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~-iv~~g~ 32 (112)
+|+||+|+.+.+.-....+.+.+.|. ++.+|+
T Consensus 267 ~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~ 299 (393)
T PRK06153 267 FTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGM 299 (393)
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeee
Confidence 69999999887754444455544453 555554
No 376
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=28.57 E-value=93 Score=21.47 Aligned_cols=32 Identities=9% Similarity=0.119 Sum_probs=22.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+|+.|++........-.++..|-+++..+.
T Consensus 74 ~DvVf~a~p~~~s~~~~~~~~~~G~~VIDlsg 105 (341)
T TIGR00978 74 VDIVFSALPSEVAEEVEPKLAEAGKPVFSNAS 105 (341)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHCCCEEEECCh
Confidence 58999999887666666555566666776653
No 377
>PRK07589 ornithine cyclodeaminase; Validated
Probab=28.57 E-value=70 Score=22.32 Aligned_cols=39 Identities=13% Similarity=0.037 Sum_probs=26.7
Q ss_pred CcEEEEcccChH---HHHHHHhhccCCcEEEEEecCCC-ccccCh
Q psy12355 1 MMLYLDPLGTEN---CLTLGINVTKMGGKLMLVGMGPQ-MVSVPL 41 (112)
Q Consensus 1 ~D~v~d~~g~~~---~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~ 41 (112)
+|+|+-|+++.. .+. -+.+++|-++..+|.+.. ..+++.
T Consensus 194 ADIIvtaT~S~~~~Pvl~--~~~lkpG~hV~aIGs~~p~~~Eld~ 236 (346)
T PRK07589 194 ADIITTVTADKTNATILT--DDMVEPGMHINAVGGDCPGKTELHP 236 (346)
T ss_pred CCEEEEecCCCCCCceec--HHHcCCCcEEEecCCCCCCcccCCH
Confidence 589998886543 223 368899999999996553 445553
No 378
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.56 E-value=60 Score=22.03 Aligned_cols=31 Identities=19% Similarity=0.346 Sum_probs=25.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+. -+.+++|..++.+|..
T Consensus 201 ADIvV~AvGkp~~i~--~~~vk~gavvIDvGin 231 (281)
T PRK14183 201 ADIVIVGVGKPNLIT--EDMVKEGAIVIDIGIN 231 (281)
T ss_pred CCEEEEecCcccccC--HHHcCCCcEEEEeecc
Confidence 589999999887544 5688999999999854
No 379
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=28.27 E-value=62 Score=21.97 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=25.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 202 ADIvI~AvG~p~~i~--~~~ik~gavVIDvGi~~ 233 (284)
T PRK14190 202 ADILIVAVGKPKLIT--ADMVKEGAVVIDVGVNR 233 (284)
T ss_pred CCEEEEecCCCCcCC--HHHcCCCCEEEEeeccc
Confidence 589999998887444 56679999999998654
No 380
>KOG2198|consensus
Probab=28.25 E-value=56 Score=23.15 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=15.8
Q ss_pred HHHHHHhhccCCcEEEEEec
Q psy12355 13 CLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~ 32 (112)
.+..++++|++||++|.--.
T Consensus 278 iL~rgl~lLk~GG~lVYSTC 297 (375)
T KOG2198|consen 278 ILRRGLRLLKVGGRLVYSTC 297 (375)
T ss_pred HHHHHHHHhcCCCEEEEecc
Confidence 45678999999999986543
No 381
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=28.19 E-value=61 Score=22.20 Aligned_cols=32 Identities=16% Similarity=0.194 Sum_probs=25.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 211 ADIvv~AvGk~~~i~--~~~vk~gavVIDvGin~ 242 (299)
T PLN02516 211 ADIVIAAAGQAMMIK--GDWIKPGAAVIDVGTNA 242 (299)
T ss_pred CCEEEEcCCCcCccC--HHHcCCCCEEEEeeccc
Confidence 589999999876444 67899999999999643
No 382
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=28.03 E-value=89 Score=19.81 Aligned_cols=13 Identities=0% Similarity=0.092 Sum_probs=10.2
Q ss_pred CcEEEEcccChHH
Q psy12355 1 MMLYLDPLGTENC 13 (112)
Q Consensus 1 ~D~v~d~~g~~~~ 13 (112)
+|+|+||+.+..+
T Consensus 111 ~DlVi~a~Dn~~~ 123 (200)
T TIGR02354 111 ADIVCEAFDNAEA 123 (200)
T ss_pred CCEEEECCCCHHH
Confidence 6999999876554
No 383
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=27.98 E-value=1.1e+02 Score=21.51 Aligned_cols=32 Identities=13% Similarity=0.029 Sum_probs=27.1
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
+|+||=|++........-+.+..+.+++.++.
T Consensus 71 ~DvvFlalPhg~s~~~v~~l~~~g~~VIDLSa 102 (349)
T COG0002 71 CDVVFLALPHGVSAELVPELLEAGCKVIDLSA 102 (349)
T ss_pred CCEEEEecCchhHHHHHHHHHhCCCeEEECCc
Confidence 59999999988878888888888999888864
No 384
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=27.95 E-value=10 Score=27.30 Aligned_cols=12 Identities=17% Similarity=-0.014 Sum_probs=9.5
Q ss_pred CcEEEEcccChH
Q psy12355 1 MMLYLDPLGTEN 12 (112)
Q Consensus 1 ~D~v~d~~g~~~ 12 (112)
||.+|.++|+..
T Consensus 227 ~D~vilAtGa~~ 238 (467)
T TIGR01318 227 YDAVFLGVGTYR 238 (467)
T ss_pred CCEEEEEeCCCC
Confidence 688999998754
No 385
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.89 E-value=1.5e+02 Score=18.60 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=14.7
Q ss_pred HHHHHhhccCCcEEEEEecC
Q psy12355 14 LTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 14 ~~~~~~~l~~~G~iv~~g~~ 33 (112)
+...++.++++|+++.++..
T Consensus 118 ~~~~~~~~~~~~~iv~~ss~ 137 (238)
T PRK05786 118 VNASLRFLKEGSSIVLVSSM 137 (238)
T ss_pred HHHHHHHHhcCCEEEEEecc
Confidence 44556677788999999854
No 386
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=27.89 E-value=76 Score=21.57 Aligned_cols=23 Identities=26% Similarity=0.508 Sum_probs=18.1
Q ss_pred HHHHHHhhccCCcEEEEEecCCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
....+.++++.+||++.+|....
T Consensus 47 a~~~~~~~l~~ggrl~~~GaG~S 69 (296)
T PRK12570 47 AVDKIVAAFKKGGRLIYMGAGTS 69 (296)
T ss_pred HHHHHHHHHHcCCeEEEECCchh
Confidence 34567778999999999996553
No 387
>PRK06349 homoserine dehydrogenase; Provisional
Probab=27.87 E-value=1.2e+02 Score=21.73 Aligned_cols=29 Identities=10% Similarity=0.217 Sum_probs=18.7
Q ss_pred CcEEEEcccChH-HHHHHHhhccCCcEEEE
Q psy12355 1 MMLYLDPLGTEN-CLTLGINVTKMGGKLML 29 (112)
Q Consensus 1 ~D~v~d~~g~~~-~~~~~~~~l~~~G~iv~ 29 (112)
.|+|+||+|... ......++|+.|=.++.
T Consensus 73 iDvVve~tg~~~~~~~~~~~aL~~GkhVVt 102 (426)
T PRK06349 73 IDIVVELMGGIEPARELILKALEAGKHVVT 102 (426)
T ss_pred CCEEEECCCCchHHHHHHHHHHHCCCeEEE
Confidence 489999987643 34555567766655554
No 388
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=27.45 E-value=79 Score=20.30 Aligned_cols=20 Identities=25% Similarity=0.089 Sum_probs=17.0
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
..+....+.|++||+++...
T Consensus 142 ~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 142 ALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred HHHHHHHHhcCCCeEEEEee
Confidence 45788899999999998875
No 389
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=27.33 E-value=57 Score=23.03 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=25.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 275 ADIVIsAvGkp~~i~--~d~vK~GAvVIDVGIn~ 306 (364)
T PLN02616 275 ADIIISAVGQPNMVR--GSWIKPGAVVIDVGINP 306 (364)
T ss_pred CCEEEEcCCCcCcCC--HHHcCCCCEEEeccccc
Confidence 699999999887544 56899999999999643
No 390
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.20 E-value=62 Score=21.98 Aligned_cols=32 Identities=16% Similarity=0.320 Sum_probs=26.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 203 ADIvIsAvGk~~~i~--~~~ik~gavVIDvGin~ 234 (284)
T PRK14177 203 ADIIVGAVGKPEFIK--ADWISEGAVLLDAGYNP 234 (284)
T ss_pred CCEEEEeCCCcCccC--HHHcCCCCEEEEecCcc
Confidence 689999999887544 67899999999999643
No 391
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.17 E-value=60 Score=22.04 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=25.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 204 ADIvV~AvGkp~~i~--~~~ik~GavVIDvGin~ 235 (284)
T PRK14193 204 ADIIVAAAGVAHLVT--ADMVKPGAAVLDVGVSR 235 (284)
T ss_pred CCEEEEecCCcCccC--HHHcCCCCEEEEccccc
Confidence 589999999887444 56799999999998643
No 392
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=27.00 E-value=61 Score=22.18 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=25.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 202 ADIvIsAvGkp~~i~--~~~ik~gavVIDvGin~ 233 (297)
T PRK14186 202 ADILVAAAGRPNLIG--AEMVKPGAVVVDVGIHR 233 (297)
T ss_pred CCEEEEccCCcCccC--HHHcCCCCEEEEecccc
Confidence 599999999887544 56899999999999643
No 393
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.97 E-value=62 Score=21.98 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=25.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 201 ADIvI~AvG~~~~i~--~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 201 ADILVVATGLAKFVK--KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred CCEEEEecCCcCccC--HHHcCCCCEEEEccCcc
Confidence 589999999887544 56789999999998653
No 394
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.86 E-value=2.3e+02 Score=20.63 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=25.4
Q ss_pred cCCcEEEEEecCCCccccChhhhhhcCeeEEeEec-cCCCHHHHHHH
Q psy12355 22 KMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFR-YVNDYPDALEM 67 (112)
Q Consensus 22 ~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~-~~~~~~~~~~~ 67 (112)
=..|.++++|...++..|.....+.....+.-... +.+++.++++-
T Consensus 128 vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~r 174 (436)
T COG2256 128 VENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKR 174 (436)
T ss_pred hcCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHH
Confidence 34577888877666555655554444444444332 22556655554
No 395
>PRK07806 short chain dehydrogenase; Provisional
Probab=26.86 E-value=1.6e+02 Score=18.61 Aligned_cols=20 Identities=10% Similarity=0.238 Sum_probs=13.8
Q ss_pred HHHHHHhhccCCcEEEEEec
Q psy12355 13 CLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~ 32 (112)
.+..+.+.++.+|+++.++.
T Consensus 116 l~~~~~~~~~~~~~iv~isS 135 (248)
T PRK07806 116 LARAALPLMPAGSRVVFVTS 135 (248)
T ss_pred HHHHHHhhccCCceEEEEeC
Confidence 44556666667789998864
No 396
>PF11123 DNA_Packaging_2: DNA packaging protein ; InterPro: IPR024345 This entry represents Gp18 (gene 18 product), also known as DNA maturase A, from T7-like bacteriophages. In Bacteriophage T3, this protein is required for DNA packaging and functions in a complex with Gp19 [].
Probab=26.72 E-value=75 Score=17.06 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=27.3
Q ss_pred CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhc
Q psy12355 59 NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASK 97 (112)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~ 97 (112)
.-+..+-+++.++++.+..+...+--+.+...|++...+
T Consensus 32 QLYnAI~k~L~RHkF~iskl~pd~~~LG~L~~aL~ey~~ 70 (82)
T PF11123_consen 32 QLYNAIGKLLDRHKFQISKLQPDENILGELAAALEEYKK 70 (82)
T ss_pred HHHHHHHHHHHHccchhhhcCccHHHHHHHHHHHHHHHH
Confidence 445667788889988877666555567777777776654
No 397
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.70 E-value=63 Score=21.92 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=25.9
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 201 ADIvIsAvGkp~~i~--~~~vk~GavVIDvGin~ 232 (282)
T PRK14166 201 ADLIIVAAGCVNLLR--SDMVKEGVIVVDVGINR 232 (282)
T ss_pred CCEEEEcCCCcCccC--HHHcCCCCEEEEecccc
Confidence 689999999987554 45899999999999643
No 398
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=26.68 E-value=1.9e+02 Score=18.92 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCC
Q psy12355 59 NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKA 99 (112)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~ 99 (112)
..+.+++....+. +|+.++..+.+=.+..++++.+..|+
T Consensus 184 ~~~~~~l~~~LR~--~pD~iiigEiR~~e~~~~~~a~~tGh 222 (270)
T PF00437_consen 184 ISYEDLLKSALRQ--DPDVIIIGEIRDPEAAEAIQAANTGH 222 (270)
T ss_dssp BSHHHHHHHHTTS----SEEEESCE-SCHHHHHHHHHHTT-
T ss_pred ccHHHHHHHHhcC--CCCcccccccCCHhHHHHHHhhccCC
Confidence 5677777766554 35545544455455666666666554
No 399
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=26.65 E-value=1.5e+02 Score=17.77 Aligned_cols=32 Identities=13% Similarity=0.175 Sum_probs=19.4
Q ss_pred CcEEEEcccC----hHHHHHHHhhccCCc--EEEEEec
Q psy12355 1 MMLYLDPLGT----ENCLTLGINVTKMGG--KLMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~----~~~~~~~~~~l~~~G--~iv~~g~ 32 (112)
+|+||.+.|. .......++.++..| +++.++.
T Consensus 61 ~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~~v~~s~ 98 (183)
T PF13460_consen 61 ADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKRVVYLSS 98 (183)
T ss_dssp SSEEEECCHSTTTHHHHHHHHHHHHHHTTSSEEEEEEE
T ss_pred cchhhhhhhhhcccccccccccccccccccccceeeec
Confidence 5888888874 223445555554444 6777664
No 400
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.64 E-value=62 Score=22.15 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=25.0
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+. -+.+++|..++.+|..
T Consensus 209 ADIvVsAvGkp~~i~--~~~ik~gavVIDvGin 239 (297)
T PRK14168 209 ADILIVAAGVPNLVK--PEWIKPGATVIDVGVN 239 (297)
T ss_pred CCEEEEecCCcCccC--HHHcCCCCEEEecCCC
Confidence 589999999887544 5678999999999854
No 401
>PLN02823 spermine synthase
Probab=26.60 E-value=1.2e+02 Score=21.11 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=14.1
Q ss_pred HH-HHHhhccCCcEEEEEe
Q psy12355 14 LT-LGINVTKMGGKLMLVG 31 (112)
Q Consensus 14 ~~-~~~~~l~~~G~iv~~g 31 (112)
++ .+.+.|+++|.++.-.
T Consensus 202 ~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 202 YERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred HHHHHHHhcCCCcEEEEec
Confidence 44 6778999999988654
No 402
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=26.55 E-value=1.4e+02 Score=20.18 Aligned_cols=34 Identities=9% Similarity=0.147 Sum_probs=23.1
Q ss_pred CcEEEEcccChH------------------HHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTEN------------------CLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~------------------~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++.|+|.+. .+...++-.++.|.++.++.|.
T Consensus 69 aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~ 120 (306)
T cd05291 69 ADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPV 120 (306)
T ss_pred CCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChH
Confidence 589999998741 2333444567889988887654
No 403
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=26.44 E-value=1.7e+02 Score=18.30 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=32.1
Q ss_pred HHHHHHHhhccC-CcEEEEEecCCCccccCh---hh-hhhcCe---eEEeEeccC-CCHHHHHHHHHcCCC
Q psy12355 12 NCLTLGINVTKM-GGKLMLVGMGPQMVSVPL---VN-ACAKEI---DILSCFRYV-NDYPDALEMVASGKC 73 (112)
Q Consensus 12 ~~~~~~~~~l~~-~G~iv~~g~~~~~~~~~~---~~-~~~~~~---~l~g~~~~~-~~~~~~~~~~~~g~~ 73 (112)
..+...++.+.+ +.+++++|.+..-.++.. .. +..... .+.-..... ..+.++...+.+|..
T Consensus 108 ~~~~~ll~~~~~~~~klilvGD~~QL~pV~~g~~~~~l~~~~~~~~~L~~i~Rq~~~~~~~~~~~~~~g~~ 178 (196)
T PF13604_consen 108 RQLARLLRLAKKSGAKLILVGDPNQLPPVGAGSPFADLQESGGITVELTEIRRQKDPELREAAKAIREGDA 178 (196)
T ss_dssp HHHHHHHHHS-T-T-EEEEEE-TTSHHHCSTTCHHHHHCGCSTTEEEE---SCCCCTHHHHHHHHHCTT--
T ss_pred HHHHHHHHHHHhcCCEEEEECCcchhcCCcCCcHHHHHHhcCCCeEEeChhhcCCChHHHHHHHHHHcCCC
Confidence 456777888877 899999998775222222 12 222222 233333333 567788888888853
No 404
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=26.37 E-value=1.1e+02 Score=20.51 Aligned_cols=32 Identities=13% Similarity=0.077 Sum_probs=19.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcE-EEEEec
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGK-LMLVGM 32 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~-iv~~g~ 32 (112)
+|+||||.+....-....+..+..+. ++..|.
T Consensus 122 ~D~VIdaiD~~~~k~~L~~~c~~~~ip~I~~gG 154 (268)
T PRK15116 122 FSYVIDAIDSVRPKAALIAYCRRNKIPLVTTGG 154 (268)
T ss_pred CCEEEEcCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 68999999875544445555555444 444443
No 405
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=26.11 E-value=86 Score=22.36 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=22.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLML 29 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~ 29 (112)
+|+|++++++...+...+.+++.|=++++
T Consensus 92 vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaL 120 (385)
T PRK05447 92 ADVVVAAIVGAAGLLPTLAAIRAGKRIAL 120 (385)
T ss_pred CCEEEEeCcCcccHHHHHHHHHCCCcEEE
Confidence 58999988777677888888887766665
No 406
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=25.91 E-value=1.2e+02 Score=20.64 Aligned_cols=33 Identities=9% Similarity=0.043 Sum_probs=25.8
Q ss_pred Cc-EEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MM-LYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D-~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+| ++||.+ .|++....++.....|.-+.+|...
T Consensus 69 ~d~VvIDFT-~P~~~~~n~~~~~~~gv~~ViGTTG 102 (275)
T TIGR02130 69 PELICIDYT-HPSAVNDNAAFYGKHGIPFVMGTTG 102 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHHHHCCCCEEEcCCC
Confidence 36 899998 7777777888888888888888544
No 407
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.85 E-value=70 Score=21.78 Aligned_cols=32 Identities=9% Similarity=0.138 Sum_probs=25.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 201 ADIvV~AvG~p~~i~--~~~ik~GavVIDvGin~ 232 (287)
T PRK14181 201 ADIIIAAIGVPLFIK--EEMIAEKAVIVDVGTSR 232 (287)
T ss_pred CCEEEEccCCcCccC--HHHcCCCCEEEEecccc
Confidence 589999999887444 57899999999999643
No 408
>PRK00625 shikimate kinase; Provisional
Probab=25.72 E-value=93 Score=19.22 Aligned_cols=13 Identities=8% Similarity=0.125 Sum_probs=5.8
Q ss_pred hhccCCcEEEEEe
Q psy12355 19 NVTKMGGKLMLVG 31 (112)
Q Consensus 19 ~~l~~~G~iv~~g 31 (112)
+.+...+.++..|
T Consensus 68 ~~l~~~~~VIs~G 80 (173)
T PRK00625 68 TSLPVIPSIVALG 80 (173)
T ss_pred HHhccCCeEEECC
Confidence 3333344455454
No 409
>KOG1205|consensus
Probab=25.70 E-value=81 Score=21.43 Aligned_cols=27 Identities=15% Similarity=0.172 Sum_probs=18.4
Q ss_pred cChHHHHHHHhhccCC--cEEEEEecCCC
Q psy12355 9 GTENCLTLGINVTKMG--GKLMLVGMGPQ 35 (112)
Q Consensus 9 g~~~~~~~~~~~l~~~--G~iv~~g~~~~ 35 (112)
|.-.....++..+++. |+|+.++.-.+
T Consensus 125 G~V~~Tk~alp~m~~r~~GhIVvisSiaG 153 (282)
T KOG1205|consen 125 GTVYLTKAALPSMKKRNDGHIVVISSIAG 153 (282)
T ss_pred hhHHHHHHHHHHhhhcCCCeEEEEecccc
Confidence 3334556677777665 99999985544
No 410
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=25.43 E-value=85 Score=22.23 Aligned_cols=20 Identities=20% Similarity=0.305 Sum_probs=17.0
Q ss_pred HHHHHHhhccCCcEEEEEec
Q psy12355 13 CLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~ 32 (112)
.+..+.+.|++||++.+++.
T Consensus 322 l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 322 MFHHARRCLKINGELYIVAN 341 (378)
T ss_pred HHHHHHHhcccCCEEEEEEe
Confidence 46778889999999999974
No 411
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=25.41 E-value=72 Score=21.81 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=25.4
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~ 33 (112)
+|+++-++|.+..+. -+.+++|..++.+|..
T Consensus 204 ADIvVsAvGkp~~i~--~~~ik~gaiVIDVGin 234 (294)
T PRK14187 204 ADILVAAVGIPNFVK--YSWIKKGAIVIDVGIN 234 (294)
T ss_pred CCEEEEccCCcCccC--HHHcCCCCEEEEeccc
Confidence 699999999887544 5678999999999964
No 412
>PRK06270 homoserine dehydrogenase; Provisional
Probab=25.30 E-value=94 Score=21.48 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=17.3
Q ss_pred CcEEEEcccChH-----HHHHHHhhccCCcEEEE
Q psy12355 1 MMLYLDPLGTEN-----CLTLGINVTKMGGKLML 29 (112)
Q Consensus 1 ~D~v~d~~g~~~-----~~~~~~~~l~~~G~iv~ 29 (112)
.|+|+||+++.. .......+++.|=.++.
T Consensus 90 ~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVt 123 (341)
T PRK06270 90 ADVVVEATPTNIETGEPALSHCRKALERGKHVVT 123 (341)
T ss_pred CCEEEECCcCcccccchHHHHHHHHHHCCCEEEc
Confidence 489999987521 24445666665544443
No 413
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=25.19 E-value=91 Score=21.19 Aligned_cols=22 Identities=23% Similarity=0.593 Sum_probs=18.4
Q ss_pred HHHHHHhhccCCcEEEEEecCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
.+..+.+.++.+||+..+|...
T Consensus 51 av~~~~~~l~~ggrI~~~GaGt 72 (299)
T PRK05441 51 AVDAAAAALRQGGRLIYIGAGT 72 (299)
T ss_pred HHHHHHHHHHCCCEEEEEcCcH
Confidence 4667888999999999999654
No 414
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=24.97 E-value=70 Score=13.31 Aligned_cols=17 Identities=47% Similarity=0.513 Sum_probs=11.7
Q ss_pred cHHHHHHHHhcCCCCceEE
Q psy12355 87 EAVEAFKTASKKADDTIKI 105 (112)
Q Consensus 87 ~~~~a~~~~~~~~~~~~k~ 105 (112)
++.++++.+..... |++
T Consensus 1 E~~~~F~~~D~d~d--G~I 17 (29)
T PF00036_consen 1 ELKEAFREFDKDGD--GKI 17 (29)
T ss_dssp HHHHHHHHHSTTSS--SEE
T ss_pred CHHHHHHHHCCCCC--CcC
Confidence 46788888877664 554
No 415
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=24.85 E-value=2.5e+02 Score=19.58 Aligned_cols=71 Identities=11% Similarity=0.020 Sum_probs=34.7
Q ss_pred EEEEccc----ChHHHHHHHhhccCCcEEEEEecCCCccccC-hhh-hhhcCeeEEeEeccC-CCHHHHHHHHHcCCCCC
Q psy12355 3 LYLDPLG----TENCLTLGINVTKMGGKLMLVGMGPQMVSVP-LVN-ACAKEIDILSCFRYV-NDYPDALEMVASGKCPV 75 (112)
Q Consensus 3 ~v~d~~g----~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~-~~~-~~~~~~~l~g~~~~~-~~~~~~~~~~~~g~~~~ 75 (112)
+++++++ .+.++..+++.++.+ +.++.+...++ +. +.. ....+..+....... +...++...+.+-.+++
T Consensus 127 L~Id~s~n~~kD~evleaale~~~g~-~pLInSat~en--~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~Gi~~ 203 (319)
T PRK04452 127 LIIGGSGNPEKDAEVLEKVAEAAEGE-RCLLGSAEEDN--YKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELGVPR 203 (319)
T ss_pred EEEecCCCCCCCHHHHHHHHHHhCCC-CCEEEECCHHH--HHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcCCCH
Confidence 5677776 467778777777643 44444443322 11 111 233344444443222 44555555555544433
Q ss_pred c
Q psy12355 76 R 76 (112)
Q Consensus 76 ~ 76 (112)
+
T Consensus 204 e 204 (319)
T PRK04452 204 E 204 (319)
T ss_pred H
Confidence 3
No 416
>PF08902 DUF1848: Domain of unknown function (DUF1848); InterPro: IPR014998 This group of proteins are functionally uncharacterised. The C terminus contains a cluster of cysteines that are similar to the iron-sulphur cluster found at the N terminus of IPR007197 from INTERPRO.
Probab=24.81 E-value=1.7e+02 Score=19.76 Aligned_cols=48 Identities=15% Similarity=0.288 Sum_probs=30.6
Q ss_pred CHHHHHHHHHcCCC--CCccce-eeeeCcccHHHHHHHHhc---CCCCceEEEEee
Q psy12355 60 DYPDALEMVASGKC--PVRKLI-THNFKLEEAVEAFKTASK---KADDTIKIMIHC 109 (112)
Q Consensus 60 ~~~~~~~~~~~g~~--~~~~~~-~~~~~l~~~~~a~~~~~~---~~~~~~k~v~~~ 109 (112)
.|+++.+.+...++ +.+|++ +..++++.-.++|+.+.+ +.+ .++|++|
T Consensus 101 ~f~~Ls~~iG~~rViWRYDPIil~~~~~~~~h~~~F~~la~~L~g~t--~~~viSF 154 (266)
T PF08902_consen 101 TFRELSERIGPERVIWRYDPIILTDKYTVDYHLEAFERLAEALAGYT--DRCVISF 154 (266)
T ss_pred HHHHHHHHHCCCcEEEecCCEeECCCCCHHHHHHHHHHHHHHHhccC--CEEEEEe
Confidence 35556666666554 345543 667888887788877643 333 7888876
No 417
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.69 E-value=71 Score=21.75 Aligned_cols=32 Identities=16% Similarity=0.283 Sum_probs=25.6
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 199 ADIvIsAvGkp~~i~--~~~vk~GavVIDVGin~ 230 (287)
T PRK14173 199 ADVLVVAVGRPHLIT--PEMVRPGAVVVDVGINR 230 (287)
T ss_pred CCEEEEecCCcCccC--HHHcCCCCEEEEccCcc
Confidence 589999999887543 56789999999999643
No 418
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=24.60 E-value=1.1e+02 Score=20.06 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=16.2
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
+-++.+.+.|+++|.++.-+
T Consensus 172 ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 172 EFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp HHHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhhcCCCcEEEEEc
Confidence 45777888999999998765
No 419
>KOG1975|consensus
Probab=24.55 E-value=70 Score=22.52 Aligned_cols=18 Identities=22% Similarity=0.170 Sum_probs=14.9
Q ss_pred HHHHHHhhccCCcEEEEE
Q psy12355 13 CLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~ 30 (112)
.+..+.++|+|||.++-.
T Consensus 219 ~l~Nva~~LkpGG~FIgT 236 (389)
T KOG1975|consen 219 ALRNVAKCLKPGGVFIGT 236 (389)
T ss_pred HHHHHHhhcCCCcEEEEe
Confidence 578899999999996644
No 420
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=24.26 E-value=1.5e+02 Score=22.94 Aligned_cols=45 Identities=7% Similarity=0.197 Sum_probs=24.8
Q ss_pred CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCCC
Q psy12355 59 NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG 112 (112)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~~ 112 (112)
+.|++-++++.+... +..+++|+.++++.-..-+ ...|+|+||+|
T Consensus 72 e~Fe~qL~~Lk~nGY-------~~ISl~el~~~~~g~~~LP--~K~VaLTFDDG 116 (671)
T PRK14582 72 SALREQFAWLRENGY-------QPVSVAQILEAHRGGKPLP--EKAVLLTFDDG 116 (671)
T ss_pred HHHHHHHHHHHHCcC-------EEccHHHHHHHHhcCCCCC--CCeEEEEEEcC
Confidence 567777777776533 2456666666544311111 14467777654
No 421
>PLN02489 homocysteine S-methyltransferase
Probab=24.21 E-value=2.5e+02 Score=19.48 Aligned_cols=23 Identities=4% Similarity=-0.177 Sum_probs=16.1
Q ss_pred EEEEcccChHHHHHHHhhccCCcE
Q psy12355 3 LYLDPLGTENCLTLGINVTKMGGK 26 (112)
Q Consensus 3 ~v~d~~g~~~~~~~~~~~l~~~G~ 26 (112)
+-++|+ .+..+..+++.++....
T Consensus 245 iGiNC~-~p~~~~~~l~~l~~~~~ 267 (335)
T PLN02489 245 VGINCT-PPRFIHGLILSIRKVTS 267 (335)
T ss_pred EEecCC-CHHHHHHHHHHHHhhcC
Confidence 457898 56777888887766543
No 422
>PRK13938 phosphoheptose isomerase; Provisional
Probab=24.12 E-value=99 Score=19.62 Aligned_cols=22 Identities=18% Similarity=0.231 Sum_probs=17.5
Q ss_pred HHHHHhhccCCcEEEEEecCCC
Q psy12355 14 LTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 14 ~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
.....++++.+||+..+|....
T Consensus 35 a~~~~~~l~~g~rI~i~G~G~S 56 (196)
T PRK13938 35 GDRLIAGYRAGARVFMCGNGGS 56 (196)
T ss_pred HHHHHHHHHCCCEEEEEeCcHH
Confidence 4556677999999999997664
No 423
>KOG2924|consensus
Probab=24.08 E-value=72 Score=21.82 Aligned_cols=29 Identities=17% Similarity=0.133 Sum_probs=20.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCC--cEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG--GKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~--G~iv~~g 31 (112)
+|+++.+.|+-+ +..++||+|- |.+.+-|
T Consensus 125 VdviVttaGGvE--EDlIKclaPTy~g~F~L~G 155 (366)
T KOG2924|consen 125 VDVIVTTAGGVE--EDLIKCLAPTYLGDFSLDG 155 (366)
T ss_pred eeEEEecCCccH--HHHHHHhCccceeeeecCh
Confidence 588888887765 7789999885 4444433
No 424
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=24.05 E-value=1.1e+02 Score=21.37 Aligned_cols=30 Identities=7% Similarity=-0.069 Sum_probs=19.3
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|+|++|+|......-+-.|++.|-.++..
T Consensus 68 ~dvVin~~gp~~~~~v~~~~i~~g~~yvD~ 97 (386)
T PF03435_consen 68 CDVVINCAGPFFGEPVARACIEAGVHYVDT 97 (386)
T ss_dssp SSEEEE-SSGGGHHHHHHHHHHHT-EEEES
T ss_pred CCEEEECCccchhHHHHHHHHHhCCCeecc
Confidence 489999997654445555567777777774
No 425
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=23.99 E-value=1.4e+02 Score=17.53 Aligned_cols=23 Identities=4% Similarity=-0.138 Sum_probs=11.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMG 24 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~ 24 (112)
+|++|-+++.. .+....+.|+..
T Consensus 69 aDlv~iavpDd-aI~~va~~La~~ 91 (127)
T PF10727_consen 69 ADLVFIAVPDD-AIAEVAEQLAQY 91 (127)
T ss_dssp -SEEEE-S-CC-HHHHHHHHHHCC
T ss_pred CCEEEEEechH-HHHHHHHHHHHh
Confidence 47777777543 456555555443
No 426
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=23.80 E-value=1.1e+02 Score=17.92 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=15.6
Q ss_pred HHHHHHhhccCCcEEEEEecCC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+.....+++..+|++..+|...
T Consensus 24 aa~~i~~~~~~gg~i~~~G~G~ 45 (138)
T PF13580_consen 24 AADLIAEALRNGGRIFVCGNGH 45 (138)
T ss_dssp HHHHHHHHHHTT--EEEEESTH
T ss_pred HHHHHHHHHHCCCEEEEEcCch
Confidence 3456777889999999999754
No 427
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=23.77 E-value=61 Score=20.86 Aligned_cols=21 Identities=19% Similarity=0.188 Sum_probs=16.3
Q ss_pred HHHHHHhhccCCcEEEEEecC
Q psy12355 13 CLTLGINVTKMGGKLMLVGMG 33 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g~~ 33 (112)
.+....+.|+|||.+|.-...
T Consensus 128 ~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 128 ALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHHHHHHhCCCCEEEEEEec
Confidence 466777899999999986543
No 428
>KOG1253|consensus
Probab=23.75 E-value=1.2e+02 Score=22.63 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=20.3
Q ss_pred EEcccChH-HHHHHHhhccCCcEEEEEe
Q psy12355 5 LDPLGTEN-CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 5 ~d~~g~~~-~~~~~~~~l~~~G~iv~~g 31 (112)
+|.=|++. -+..|+++++.||-+.+..
T Consensus 189 LDPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LDPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 35445543 3788999999999998875
No 429
>PRK08441 oorC 2-oxoglutarate-acceptor oxidoreductase subunit OorC; Reviewed
Probab=23.71 E-value=1.6e+02 Score=18.34 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=20.2
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~ 30 (112)
+|+++.. .+.++......++++|.++.=
T Consensus 69 ~D~lval--~~~~~~~~~~~l~~gg~ii~n 96 (183)
T PRK08441 69 IDFMLST--AQISYNQFKSGVKEGGIIVVE 96 (183)
T ss_pred CCEEEEC--CHHHHHHHHhhcCCCeEEEEc
Confidence 4677743 455677788899999998754
No 430
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=23.45 E-value=1e+02 Score=20.11 Aligned_cols=19 Identities=16% Similarity=0.156 Sum_probs=16.3
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
...+.++.|+|||.+...-
T Consensus 148 vna~vf~~LKPGGv~~V~d 166 (238)
T COG4798 148 VNAAVFKALKPGGVYLVED 166 (238)
T ss_pred HHHHHHHhcCCCcEEEEEe
Confidence 4677899999999998875
No 431
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=23.42 E-value=1.6e+02 Score=22.79 Aligned_cols=45 Identities=7% Similarity=0.175 Sum_probs=24.1
Q ss_pred CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCCCCceEEEEeeCCC
Q psy12355 59 NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG 112 (112)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~~~~~k~v~~~~~~ 112 (112)
+.|++-++++.+... +..+++|+.++...-..-+ ..-|+|+||+|
T Consensus 72 e~Fe~QL~~Lk~nGY-------~~VSL~el~~~~~g~~~LP--~KaV~LTFDDG 116 (672)
T PRK14581 72 SALNEQFVWLRDNGY-------HVVSVDQILAARNGGPTLP--DKAVLLTFDDG 116 (672)
T ss_pred HHHHHHHHHHHHCcC-------EEecHHHHHHHHhcCCCCC--CCeEEEEEEcC
Confidence 567777777776533 2356666665444321111 14466677654
No 432
>cd06844 STAS Sulphate Transporter and Anti-Sigma factor antagonist domain found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain is found in the C-terminal region of sulphate transporters as well as in bacterial and archaeal proteins involved in the regulation of sigma factors, like anti-anti-sigma factors and "stressosome" components. The sigma factor regulators are involved in protein-protein interaction which is regulated by phosphorylation.
Probab=23.36 E-value=80 Score=17.15 Aligned_cols=9 Identities=44% Similarity=1.128 Sum_probs=3.9
Q ss_pred CCcEEEEEe
Q psy12355 23 MGGKLMLVG 31 (112)
Q Consensus 23 ~~G~iv~~g 31 (112)
.++++...+
T Consensus 70 ~g~~l~l~~ 78 (100)
T cd06844 70 VGGQFVLTG 78 (100)
T ss_pred cCCEEEEEC
Confidence 344444444
No 433
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=23.27 E-value=1.1e+02 Score=21.00 Aligned_cols=20 Identities=20% Similarity=0.043 Sum_probs=16.2
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
..+..+.+.|++||+++.+-
T Consensus 275 ~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 275 RSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred HHHHHHHHHccCCcEEEEEE
Confidence 35677788999999998774
No 434
>PRK03612 spermidine synthase; Provisional
Probab=23.23 E-value=1.3e+02 Score=22.17 Aligned_cols=19 Identities=16% Similarity=0.030 Sum_probs=15.8
Q ss_pred HHHHHHhhccCCcEEEEEe
Q psy12355 13 CLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 13 ~~~~~~~~l~~~G~iv~~g 31 (112)
.++.+.+.|+++|.++...
T Consensus 397 f~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 397 FYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred HHHHHHHhcCCCeEEEEec
Confidence 4677889999999998765
No 435
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=23.16 E-value=1.6e+02 Score=20.18 Aligned_cols=31 Identities=10% Similarity=0.026 Sum_probs=20.8
Q ss_pred CcEEEEcccChHHH-----HHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCL-----TLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~-----~~~~~~l~~~G~iv~~g 31 (112)
+|+|+.+.+..+.. ...++.++++..++.+|
T Consensus 191 aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~a 226 (312)
T PRK15469 191 TRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLA 226 (312)
T ss_pred CCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECC
Confidence 47777777654321 23577888888888886
No 436
>PF01383 CpcD: CpcD/allophycocyanin linker domain; InterPro: IPR008213 Ferredoxin-NADP(+) oxydoreductase (FNR) (EC=1.18.1.2) transfers electrons from ferredoxin (or flavodoxin) to NADP(+) to generate NADPH. In eucaryotes, the nuclear-encoded, chloroplast-targeted enzyme contains two domains: an FAD-binding domain (see PDOC51384 from PROSITEDOC) and an NADP(+)-binding domain. With the exception of Gloeobacter violaceus PCC 7421, the predicted sequences of all cyanobacterial petH genes, encoding FNR, correspond to a protein containing three domains. Two domains at the C terminus correspond to the FAD- and NADP(+)-binding domains of higher plants FNR protein, which compose the catalytic domains of the enzyme. The N-terminal domain is similar to phycobilisome (PBS)-associated linker proteins from numerous cyanobacteria [, , ] and is associated with: - CpcD, the phycocyanin (PC)-associated, rod-capping, linker polypeptide of PBS. The similarity spans nearly the entire sequence of this linker class. - CpcC, the PC-associated rod linker polypeptide. The similarity is confined only to the C terminus of this linker class. - ApcC, the allophycocyanin (APC)-associated, core linker polypeptide. The similarity only correspond to about half of the molecule. The CpcD-like domain has an elongated shape and consists of a three-stranded beta-sheet, two alpha-helices, one of which has only about one turn, and the connecting random coil segments [].; GO: 0030089 phycobilisome; PDB: 1B33_O.
Probab=23.10 E-value=91 Score=15.46 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=12.9
Q ss_pred ChHHHHHHHhhccCCcEEEEEe
Q psy12355 10 TENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 10 ~~~~~~~~~~~l~~~G~iv~~g 31 (112)
....-+..-...+.||+|+.+-
T Consensus 33 y~~ls~~~q~I~r~GGkIvsIt 54 (56)
T PF01383_consen 33 YSQLSQEMQRINRQGGKIVSIT 54 (56)
T ss_dssp HHHHHHHHHHHHHCT-EEEEEE
T ss_pred HHHhHHHHHHHHHCCCEEEEEE
Confidence 3333344555778899988763
No 437
>COG2082 CobH Precorrin isomerase [Coenzyme metabolism]
Probab=22.84 E-value=2.3e+02 Score=18.49 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHcCCCCCccceeeeeCcccHHHHHHHHhcCC
Q psy12355 59 NDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKA 99 (112)
Q Consensus 59 ~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~a~~~~~~~~ 99 (112)
.-+-+++++++++..+|...+--..-|-++.|+=+.+.+.+
T Consensus 139 TAL~~l~elie~~~~~palvIg~PVGFv~AaesKe~L~~~~ 179 (210)
T COG2082 139 TALFELLELIEEGGIKPALVIGVPVGFVGAAESKEALRESP 179 (210)
T ss_pred HHHHHHHHHHHccCCCCcEEEEcCCcccchHHHHHHHHhCC
Confidence 56778999999988888766654455777887777776655
No 438
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. TPH catalyses the hydroxylation of L-Trp to 5-hydroxytryptophan, the rate limiting step in the biosynthesis of 5-hydroxytryptamine (serotonin) and the first reaction in the synthesis of melatonin. Very little is known about the role of the ACT domain in TPH, which appears to be regulated by phosphorylation but not by its substrate or cofactor. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.77 E-value=76 Score=16.62 Aligned_cols=25 Identities=12% Similarity=0.034 Sum_probs=18.8
Q ss_pred cEEEEcccChHHHHHHHhhccCCcE
Q psy12355 2 MLYLDPLGTENCLTLGINVTKMGGK 26 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~~~G~ 26 (112)
++.+|+-|....+.++++.++....
T Consensus 44 ~F~id~e~~~~~i~~~l~~l~~~~~ 68 (74)
T cd04929 44 EIFVDCECDQRRLDELVQLLKREVA 68 (74)
T ss_pred EEEEEEEcCHHHHHHHHHHHHHhcc
Confidence 5678888887778888888876443
No 439
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=22.66 E-value=59 Score=17.88 Aligned_cols=9 Identities=33% Similarity=0.903 Sum_probs=3.9
Q ss_pred CCcEEEEEe
Q psy12355 23 MGGKLMLVG 31 (112)
Q Consensus 23 ~~G~iv~~g 31 (112)
.|+++...|
T Consensus 72 ~g~~l~l~g 80 (109)
T cd07041 72 LGARTILTG 80 (109)
T ss_pred cCCeEEEEe
Confidence 344444444
No 440
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=22.47 E-value=94 Score=22.32 Aligned_cols=19 Identities=16% Similarity=0.289 Sum_probs=15.6
Q ss_pred HHHHHhhccCCcEEEEEec
Q psy12355 14 LTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 14 ~~~~~~~l~~~G~iv~~g~ 32 (112)
+..+.+.|++||+++..-.
T Consensus 349 L~~a~~~LkpGG~LvYsTC 367 (431)
T PRK14903 349 VSQAWKLLEKGGILLYSTC 367 (431)
T ss_pred HHHHHHhcCCCCEEEEEEC
Confidence 6788999999999876643
No 441
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=22.38 E-value=1.1e+02 Score=23.26 Aligned_cols=24 Identities=13% Similarity=0.162 Sum_probs=20.6
Q ss_pred HHHHHHHhhccCCcEEEEEecCCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
..+...++.+.+++|++++|.++.
T Consensus 280 ~lm~~ll~al~~~~rlIlvGD~~Q 303 (615)
T PRK10875 280 PMMARLIDALPPHARVIFLGDRDQ 303 (615)
T ss_pred HHHHHHHHhcccCCEEEEecchhh
Confidence 457888999999999999997664
No 442
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=22.26 E-value=89 Score=21.23 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=24.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGP 34 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~ 34 (112)
+|+++-++|.+..+. -+.+++|..++.+|...
T Consensus 201 ADIvI~AvGk~~~i~--~~~ik~gaiVIDvGin~ 232 (282)
T PRK14182 201 ADILVAAIGKAELVK--GAWVKEGAVVIDVGMNR 232 (282)
T ss_pred CCEEEEecCCcCccC--HHHcCCCCEEEEeecee
Confidence 589999998876444 56789999999998543
No 443
>PRK06274 indolepyruvate oxidoreductase subunit B; Reviewed
Probab=22.05 E-value=1.8e+02 Score=18.11 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=17.9
Q ss_pred cEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 2 MLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
|+++-. .+..+...+..++++|.++.-.
T Consensus 69 D~lva~--d~~~~~~~~~~l~~gg~ii~ns 96 (197)
T PRK06274 69 DLLLAL--EPAEVARNLHFLKKGGKIIVNA 96 (197)
T ss_pred CEEEEc--CHHHHHHHHhhcCCCcEEEEEC
Confidence 555532 2344566778899999877553
No 444
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=21.70 E-value=1e+02 Score=20.38 Aligned_cols=18 Identities=33% Similarity=0.312 Sum_probs=15.2
Q ss_pred HHHHHHHhhccCCcEEEE
Q psy12355 12 NCLTLGINVTKMGGKLML 29 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~ 29 (112)
..+....+.|+|||.+++
T Consensus 223 ~~l~~l~~~L~pGG~L~l 240 (264)
T smart00138 223 KLLNRFAEALKPGGYLFL 240 (264)
T ss_pred HHHHHHHHHhCCCeEEEE
Confidence 367888899999999885
No 445
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=21.64 E-value=1.7e+02 Score=19.74 Aligned_cols=69 Identities=12% Similarity=0.164 Sum_probs=42.5
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCCccccChhh------hhh-cCeeEEeEec--cCCCHHHHHHHHHcC
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVN------ACA-KEIDILSCFR--YVNDYPDALEMVASG 71 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~------~~~-~~~~l~g~~~--~~~~~~~~~~~~~~g 71 (112)
+|+|+.|+++....+.+.++|+.|=.+ ++ .+|+..++.+ +-. ++..+.-.+. +...++++-+++.+|
T Consensus 68 iD~V~Iatp~~~H~e~~~~AL~aGkhV-l~---EKPla~t~~ea~~l~~~a~~~~~~l~v~~~~Rf~p~~~~~k~li~~g 143 (342)
T COG0673 68 IDAVYIATPNALHAELALAALEAGKHV-LC---EKPLALTLEEAEELVELARKAGVKLMVGFNRRFDPAVQALKELIDSG 143 (342)
T ss_pred CCEEEEcCCChhhHHHHHHHHhcCCEE-EE---cCCCCCCHHHHHHHHHHHHHcCCceeeehhhhcCHHHHHHHHHHhcC
Confidence 488999998887778888887766543 33 4444444332 222 2333333333 336788888888888
Q ss_pred CC
Q psy12355 72 KC 73 (112)
Q Consensus 72 ~~ 73 (112)
.+
T Consensus 144 ~l 145 (342)
T COG0673 144 AL 145 (342)
T ss_pred Cc
Confidence 65
No 446
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=21.64 E-value=2.5e+02 Score=18.48 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=34.1
Q ss_pred hccCCcEEEEEecCCCccccChhhhhhcCeeEEeEeccCCCHHHHHHHHHcC
Q psy12355 20 VTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASG 71 (112)
Q Consensus 20 ~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g 71 (112)
-+++|.++..+|...++..--..++.. +-.+.+.-.....+++++++..+-
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~R 123 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEKR 123 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHhC
Confidence 357889999999877744334455555 334444444458888988888764
No 447
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=21.62 E-value=1.7e+02 Score=22.13 Aligned_cols=24 Identities=21% Similarity=0.182 Sum_probs=20.0
Q ss_pred HHHHHHHhhccCCcEEEEEecCCC
Q psy12355 12 NCLTLGINVTKMGGKLMLVGMGPQ 35 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g~~~~ 35 (112)
..+...++.++++.|++++|....
T Consensus 274 ~l~~~ll~al~~~~rlIlvGD~~Q 297 (586)
T TIGR01447 274 PLMAKLLKALPPNTKLILLGDKNQ 297 (586)
T ss_pred HHHHHHHHhcCCCCEEEEECChhh
Confidence 457778899999999999997664
No 448
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=21.34 E-value=1.3e+02 Score=20.03 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=18.2
Q ss_pred hHHHHHHHhhccCCcEEEEEec
Q psy12355 11 ENCLTLGINVTKMGGKLMLVGM 32 (112)
Q Consensus 11 ~~~~~~~~~~l~~~G~iv~~g~ 32 (112)
.+.+..+-++|+++|++..+--
T Consensus 150 e~~i~~a~~~lk~~G~l~~V~r 171 (248)
T COG4123 150 EDLIRAAAKLLKPGGRLAFVHR 171 (248)
T ss_pred HHHHHHHHHHccCCCEEEEEec
Confidence 3457788999999999999953
No 449
>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length. They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.
Probab=21.15 E-value=1.9e+02 Score=16.93 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=7.5
Q ss_pred hccCCcEEEEEecCC
Q psy12355 20 VTKMGGKLMLVGMGP 34 (112)
Q Consensus 20 ~l~~~G~iv~~g~~~ 34 (112)
..+|.|.++.+|.|+
T Consensus 81 l~aP~gs~V~YGQP~ 95 (121)
T PF04019_consen 81 LYAPEGSVVLYGQPG 95 (121)
T ss_pred HhCCCCCEEEECCCC
Confidence 334555555555544
No 450
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=20.96 E-value=1.5e+02 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.359 Sum_probs=20.4
Q ss_pred CcEEEEcccChHH-HHHHHhhccCCcEEEEE
Q psy12355 1 MMLYLDPLGTENC-LTLGINVTKMGGKLMLV 30 (112)
Q Consensus 1 ~D~v~d~~g~~~~-~~~~~~~l~~~G~iv~~ 30 (112)
.|+|+|++|.++. -..+++.+..+=++|..
T Consensus 102 IdvIIdATG~p~vGA~~~l~Ai~h~KHlVMm 132 (438)
T COG4091 102 IDVIIDATGVPEVGAKIALEAILHGKHLVMM 132 (438)
T ss_pred ceEEEEcCCCcchhhHhHHHHHhcCCeEEEE
Confidence 4899999998863 33466666666665555
No 451
>PRK07411 hypothetical protein; Validated
Probab=20.94 E-value=1.3e+02 Score=21.25 Aligned_cols=13 Identities=8% Similarity=-0.090 Sum_probs=10.6
Q ss_pred CcEEEEcccChHH
Q psy12355 1 MMLYLDPLGTENC 13 (112)
Q Consensus 1 ~D~v~d~~g~~~~ 13 (112)
+|+|+||+.+..+
T Consensus 129 ~D~Vvd~~d~~~~ 141 (390)
T PRK07411 129 YDVVVDGTDNFPT 141 (390)
T ss_pred CCEEEECCCCHHH
Confidence 6999999987654
No 452
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=20.88 E-value=98 Score=19.87 Aligned_cols=20 Identities=30% Similarity=0.514 Sum_probs=17.3
Q ss_pred HHHHHHhhccCC--cEEEEEec
Q psy12355 13 CLTLGINVTKMG--GKLMLVGM 32 (112)
Q Consensus 13 ~~~~~~~~l~~~--G~iv~~g~ 32 (112)
.+..+.++++|| |+|+++-.
T Consensus 179 iL~~~~~al~pg~~g~llI~e~ 200 (241)
T PF00891_consen 179 ILRNAAAALKPGKDGRLLIIEM 200 (241)
T ss_dssp HHHHHHHHSEECTTEEEEEEEE
T ss_pred HHHHHHHHhCCCCCCeEEEEee
Confidence 578899999988 99999874
No 453
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=20.86 E-value=58 Score=11.08 Aligned_cols=11 Identities=18% Similarity=0.413 Sum_probs=6.1
Q ss_pred cccHHHHHHHH
Q psy12355 85 LEEAVEAFKTA 95 (112)
Q Consensus 85 l~~~~~a~~~~ 95 (112)
++++..||+.+
T Consensus 3 ~~~V~~aY~~l 13 (14)
T PF07709_consen 3 FEKVKNAYEQL 13 (14)
T ss_pred HHHHHHHHHhc
Confidence 44556666554
No 454
>PRK06141 ornithine cyclodeaminase; Validated
Probab=20.77 E-value=89 Score=21.29 Aligned_cols=40 Identities=20% Similarity=-0.042 Sum_probs=24.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEecCCC-ccccCh
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-MVSVPL 41 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~ 41 (112)
+|+|+.|++++..+- --+.+++|-.+..+|.... ..+++.
T Consensus 190 aDIVi~aT~s~~pvl-~~~~l~~g~~i~~ig~~~~~~~El~~ 230 (314)
T PRK06141 190 ADIISCATLSTEPLV-RGEWLKPGTHLDLVGNFTPDMRECDD 230 (314)
T ss_pred CCEEEEeeCCCCCEe-cHHHcCCCCEEEeeCCCCcccccCCH
Confidence 589998887654321 1267888887777775443 344443
No 455
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=20.64 E-value=1.1e+02 Score=20.43 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=16.0
Q ss_pred HHHHHHHhhccCCcEEEEEe
Q psy12355 12 NCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 12 ~~~~~~~~~l~~~G~iv~~g 31 (112)
.-+..+-+.|+|||++++-.
T Consensus 147 ~~f~~~~~~LkpgG~~~lq~ 166 (273)
T PF02353_consen 147 AFFRKISRLLKPGGRLVLQT 166 (273)
T ss_dssp HHHHHHHHHSETTEEEEEEE
T ss_pred HHHHHHHHhcCCCcEEEEEe
Confidence 35778889999999998544
No 456
>PF09383 NIL: NIL domain; InterPro: IPR018449 This domain is found at the C terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins. This domain is likely to act as a substrate binding domain. The domain has been named after a conserved sequence in some members of the family. ; PDB: 2QRR_A 3CED_A 2QSW_A 3TUZ_D 3TUJ_D 3DHX_B 3TUI_H 3DHW_D.
Probab=20.08 E-value=1.5e+02 Score=15.24 Aligned_cols=26 Identities=15% Similarity=0.151 Sum_probs=18.0
Q ss_pred EEEcccChHHHHHHHhhccCCcEEEE
Q psy12355 4 YLDPLGTENCLTLGINVTKMGGKLML 29 (112)
Q Consensus 4 v~d~~g~~~~~~~~~~~l~~~G~iv~ 29 (112)
+++-.|.+..+.+++++|+..|..+.
T Consensus 49 ~l~l~g~~~~~~~a~~~L~~~~v~vE 74 (76)
T PF09383_consen 49 ILELPGDDEEIEKAIAYLREQGVEVE 74 (76)
T ss_dssp EEEEES-HHHHHHHHHHHHHTTEEEE
T ss_pred EEEEECCHHHHHHHHHHHHHCCCeEE
Confidence 45556666678888888888876553
No 457
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=20.07 E-value=1.7e+02 Score=18.39 Aligned_cols=26 Identities=8% Similarity=-0.114 Sum_probs=14.8
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcE
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGK 26 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~ 26 (112)
+|+|++|..........-+..+..|.
T Consensus 111 ~dvVi~~~~~~~~~~~ln~~c~~~~i 136 (197)
T cd01492 111 FDVVVATELSRAELVKINELCRKLGV 136 (197)
T ss_pred CCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 57888887665544444444444444
No 458
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=20.01 E-value=1.5e+02 Score=21.18 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=21.2
Q ss_pred cEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 2 MLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 2 D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
|+||- -|++..+.+|+.+.+.|-+++++-
T Consensus 1 DVVVv-GgG~aG~~AAi~AAr~G~~VlLiE 29 (428)
T PF12831_consen 1 DVVVV-GGGPAGVAAAIAAARAGAKVLLIE 29 (428)
T ss_dssp EEEEE---SHHHHHHHHHHHHTTS-EEEE-
T ss_pred CEEEE-CccHHHHHHHHHHHHCCCEEEEEE
Confidence 56664 456788999999999999999884
No 459
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=20.00 E-value=1.8e+02 Score=20.18 Aligned_cols=31 Identities=10% Similarity=0.114 Sum_probs=18.7
Q ss_pred CcEEEEcccChHHHHHHHhhccCCcEEEEEe
Q psy12355 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG 31 (112)
Q Consensus 1 ~D~v~d~~g~~~~~~~~~~~l~~~G~iv~~g 31 (112)
+|+||.|++........-.+.+.|-+++..+
T Consensus 77 ~DvVf~a~p~~~s~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 77 VDIVFSALPSDVAGEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred CCEEEEeCChhHHHHHHHHHHHCCCEEEECC
Confidence 5899999977654443333334555566555
Done!