RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12355
(112 letters)
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 142 bits (361), Expect = 5e-43
Identities = 74/104 (71%), Positives = 90/104 (86%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
G E C+T+GIN+T+ GG LMLVGMG QMV+VPLVNACA+EIDI S FRY NDYP ALEMV
Sbjct: 249 GNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEMV 308
Query: 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCRQG 112
ASG+C V++L+TH+FKLE+ V+AF+ A KKAD+TIK+MI CRQG
Sbjct: 309 ASGRCNVKQLVTHSFKLEQTVDAFEAARKKADNTIKVMISCRQG 352
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 134 bits (339), Expect = 1e-39
Identities = 35/100 (35%), Positives = 60/100 (60%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
G E+ + I K GGK+ ++G+G + +P + A +E+D+ +RY N +P A+ +V
Sbjct: 261 GVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWPRAIRLV 320
Query: 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
+G + +L+TH F LE+A++AF+TAS IK+ I
Sbjct: 321 ENGLVDLTRLVTHRFPLEDALKAFETASDPKTGAIKVQIQ 360
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 132 bits (335), Expect = 4e-39
Identities = 46/101 (45%), Positives = 66/101 (65%), Gaps = 2/101 (1%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMV 68
G E + GI T+ GG L+LVG+G +M +VPL++A +E+DI FRY N +P A+ M+
Sbjct: 251 GAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISML 310
Query: 69 ASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
AS V+ L+TH F LE+A+EAF+T K +KIM+ C
Sbjct: 311 ASKSVNVKPLVTHRFPLEKALEAFETFKK--GLGLKIMLKC 349
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 109 bits (274), Expect = 3e-30
Identities = 20/105 (19%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNA-CAKEIDILSCF--RYVNDYPDAL 65
G E + G+ GG+ ++G+ + L + I R +
Sbjct: 240 GNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQGT 299
Query: 66 EMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHCR 110
+V SG+ + L+TH L EAF + +K+++ +
Sbjct: 300 ALVYSGRVDLSPLLTHRLPLSRYREAFGLL--ASGQAVKVILDPK 342
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 105 bits (264), Expect = 1e-28
Identities = 20/103 (19%), Positives = 47/103 (45%), Gaps = 4/103 (3%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGPQ--MVSVPLVNACAKEIDILSCFRYVNDYPDALE 66
G + + K GG ++++G+ PQ V + + +E+ +L F + A +
Sbjct: 262 GVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPFVHRRAAD 321
Query: 67 MVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIHC 109
+VA+G + ++I+ L+EA + + +K+++
Sbjct: 322 LVATGAIEIDRMISRRISLDEAPDVISNPAAA--GEVKVLVIP 362
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 98.1 bits (245), Expect = 5e-26
Identities = 18/109 (16%), Positives = 40/109 (36%), Gaps = 10/109 (9%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVN---ACAKEIDILSCFRYV------N 59
G + L + + +L LVG Q + + KE+ ++ +
Sbjct: 238 GVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQ 297
Query: 60 DYPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
++ A ++ K + LI H E +A + ++ A K+++
Sbjct: 298 EWETASRLLTERKLSLEPLIAHRGSFESFAQAVRDIARNA-MPGKVLLI 345
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 93.8 bits (234), Expect = 2e-24
Identities = 24/103 (23%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNA-CAKEIDILSCF--RYVNDYPDAL 65
G L G+ G++ L+G+ P V++ N K + I +
Sbjct: 245 GAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWYTVS 304
Query: 66 EMVASGKCPVRKLITHNFK-LEEAVEAFKTASKKADDTIKIMI 107
++ SGK + +ITH +K ++ EAF+ +A T K++
Sbjct: 305 RLLQSGKLNLDPIITHKYKGFDKYEEAFELM--RAGKTGKVVF 345
>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase;
HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB:
2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*
Length = 357
Score = 87.4 bits (217), Expect = 6e-22
Identities = 18/106 (16%), Positives = 27/106 (25%), Gaps = 11/106 (10%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGPQM-----VSVPLVNACAKEIDILSCFRY-VNDYP 62
G + G L+G+ ++ V +
Sbjct: 251 GFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFE 310
Query: 63 DA-LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
A + K + L+T L E AF D TIK I
Sbjct: 311 AATVTFTKLPKWFLEDLVTGVHPLSEFEAAF----DDDDTTIKTAI 352
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 79.4 bits (196), Expect = 5e-19
Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 9/103 (8%)
Query: 14 LTLGINVTKMGGKLMLVGMGPQ----MVSVPLVNACAKEIDILSCFRY-VNDYPDALEMV 68
L I + G L L G + L I+ + A+ +
Sbjct: 261 LGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQAVVHL 320
Query: 69 ASGK----CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMI 107
AS K + LIT + + E K +K IKI I
Sbjct: 321 ASWKTLYPKAAKMLITKTVSINDEKELLKVLREKEHGEIKIRI 363
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 75.9 bits (187), Expect = 8e-18
Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 9/107 (8%)
Query: 9 GTENCLTLGINVTKMGGK-----LMLVGMGPQMVSVPLVNACAKEIDILSCFRYV--NDY 61
G + I + + +V + + + I+ + +
Sbjct: 291 GVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGHSGHGTF 350
Query: 62 PDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
P + ++ASG + K+I+ +EE E K + +K+ +
Sbjct: 351 PRVISLMASGM-DMTKIISKTVSMEEIPEYIKRL-QTDKSLVKVTML 395
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 60.3 bits (147), Expect = 3e-12
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 7/92 (7%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV---NDY 61
+D +E L++ GK ++VG+ + EI + V +D+
Sbjct: 245 IDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGS--LVGNQSDF 302
Query: 62 PDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
+ + +GK V+ +IT KLEEA EA
Sbjct: 303 LGIMRLAEAGK--VKPMITKTMKLEEANEAID 332
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 54.9 bits (133), Expect = 2e-10
Identities = 18/110 (16%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGM--GPQMVSVPLVNACA--KEIDILSCFRYVND 60
+ G + + + K G + V + +P I
Sbjct: 240 VIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGR 299
Query: 61 Y--PDALEMVASGKCPVRKLITHNFK-LEEAVEAFKTASKKADDTIKIMI 107
+++V + KL+TH F+ + +AF K D IK ++
Sbjct: 300 LRMERLIDLVFYKRVDPSKLVTHVFRGFDNIEKAFMLMKDKPKDLIKPVV 349
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 54.9 bits (133), Expect = 2e-10
Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 6/104 (5%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNA-CAKEIDIL-SCFRYVNDYPDA 64
G L G + + GG + G+ V + K + +
Sbjct: 276 GDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFVKT 335
Query: 65 LEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
+ + + + KLITH L+EA +A + ++ + +K++++
Sbjct: 336 VSITSRNYQLLSKLITHRLPLKEANKALELM--ESREALKVILY 377
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 54.9 bits (133), Expect = 3e-10
Identities = 13/92 (14%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV---NDY 61
D +G ++ + V + G + +VG+ + +++ Y ++
Sbjct: 244 FDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFFMIPFGASVVTP--YWGTRSEL 301
Query: 62 PDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
+ + + +G+ + T F L+E A++
Sbjct: 302 MEVVALARAGRL---DIHTETFTLDEGPAAYR 330
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 53.8 bits (130), Expect = 5e-10
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV---NDY 61
+D +GTE + G ++LVGM + VS+ + +L ND
Sbjct: 243 IDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGS--NYGSLNDL 300
Query: 62 PDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
D + + SGK K L++ +AF
Sbjct: 301 EDVVRLSESGKI---KPYIIKVPLDDINKAFT 329
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 51.1 bits (123), Expect = 6e-09
Identities = 15/92 (16%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV---NDY 61
+D +G++ + + G+L++VG G ++ P + + E+ V +
Sbjct: 259 MDFVGSQATVDYTPYLLGRMGRLIIVGYGGEL-RFPTIRVISSEVSFEGS--LVGNYVEL 315
Query: 62 PDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
+ + + GK ++ KL+E + +
Sbjct: 316 HELVTLALQGKV---RVEVDIHKLDEINDVLE 344
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 38.8 bits (91), Expect = 9e-05
Identities = 6/49 (12%), Positives = 16/49 (32%), Gaps = 4/49 (8%)
Query: 62 PDALEMVASGK--CPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
E + + + + L++A + + K + K +I
Sbjct: 344 RHLTEAILWDQMPYLSKVMNIEVITLDQAPDGYAKFDKGSP--AKFVID 390
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 38.8 bits (91), Expect = 1e-04
Identities = 4/48 (8%), Positives = 13/48 (27%), Gaps = 3/48 (6%)
Query: 62 PDALEMVASGKC-PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
++ + + + L++A + K +I
Sbjct: 345 RALMQAIMWDRINIAEVVGVQVISLDDAPRGYGEFDAGVP--KKFVID 390
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 35.6 bits (83), Expect = 0.002
Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCF----RYVNDYP 62
G+ L G++ + GK+ +VG + + IL P
Sbjct: 267 GSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIP 326
Query: 63 DALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
+ + + GK P +L+ + +E +A + + T+K +I
Sbjct: 327 ELVRLYQQGKFPFDQLVKF-YAFDEINQAAIDS--RKGITLKPIIK 369
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 34.5 bits (80), Expect = 0.004
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 4/78 (5%)
Query: 18 INVTKMGGKLMLVG-MGPQMVSVPLVNACAKEIDILSCF-RYVNDYPDALEMVASGKCPV 75
I T GG++ + G ++P + +++ IL + L V GK +
Sbjct: 252 IKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLFPILRFVEEGK--L 309
Query: 76 RKLITHNFKLEEAVEAFK 93
+ ++ LE A E +
Sbjct: 310 KPVVGQVLPLEAAAEGHR 327
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 34.5 bits (80), Expect = 0.004
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 18 INVTKMGGKLMLVG-MGPQMVSVPLVNACAKEIDILSCF-RYVNDYPDALEMVASGKCPV 75
+ G++ ++G + VS P+ K + + D + V +
Sbjct: 274 LKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALEDLVGAVDRLG--L 331
Query: 76 RKLITHNFKLEEAVEAFK 93
+ +I +K E EA
Sbjct: 332 KPVIDMRYKFTEVPEALA 349
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 33.2 bits (76), Expect = 0.010
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 6/79 (7%)
Query: 18 INVTKMGGKLMLVGM--GPQMVSVPLVNACAKEIDIL-SCFRYVNDYPDALEMVASGKCP 74
+ VT+ GG + G I+ S F + +A ++A G+
Sbjct: 331 VFVTRKGGTITTCASTSGYM-HEYDNRYLWMSLKRIIGSHFANYREAWEANRLIAKGR-- 387
Query: 75 VRKLITHNFKLEEAVEAFK 93
+ ++ + LE+ +A
Sbjct: 388 IHPTLSKVYSLEDTGQAAY 406
>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination,
NAD, zinc, inhibition, acetylation, metal-binding; HET:
NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB:
1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A*
1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A
1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...
Length = 374
Score = 33.0 bits (76), Expect = 0.011
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 60 DYPDALEMVASGKCPVRKLITHNFKLEEAVEAF 92
P + + K + LITH E+ E F
Sbjct: 327 SVPKLVADFMAKKFALDPLITHVLPFEKINEGF 359
>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione
reductase, glutathione-dependent formaldehyde
dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo
sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A*
2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*
Length = 373
Score = 32.9 bits (76), Expect = 0.013
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 60 DYPDALEMVASGKCPVRKLITHNFKLEEAVEAF 92
P + S K V + +THN +E +AF
Sbjct: 326 SVPKLVSEYMSKKIKVDEFVTHNLSFDEINKAF 358
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 32.6 bits (75), Expect = 0.017
Identities = 14/103 (13%), Positives = 38/103 (36%), Gaps = 15/103 (14%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVG-MGPQMVSVPLVNACAKEIDILSCF--RYVNDY 61
L+ +G ++ L + GG ++ G M Q V + K++ + + ++ D+
Sbjct: 245 LNCVGGKSSTEL-LRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDH 303
Query: 62 PDA---------LEMVASGKCPVRKLITHNFKLEEAVEAFKTA 95
+++ G+ + L++ A + +
Sbjct: 304 SPDQFKELILTLCDLIRRGQ--LTAPACSQVPLQDYQSALEAS 344
>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus}
SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*
Length = 376
Score = 31.8 bits (73), Expect = 0.027
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 9 GTENCLTLGINVTKMG-GKLMLVGMGPQMVSVPLVNACAKEIDILSCF---RYVNDYPDA 64
GT L ++ T +G G +VG +++P V+ + F + V+ P+
Sbjct: 274 GTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGRSINGTFFGGWKSVDSVPNL 333
Query: 65 LEMVASGKCPVRKLITHNFKLEEAVEAF 92
+ + K + L+TH E +A
Sbjct: 334 VSDYKNKKFDLDLLVTHALPFESINDAI 361
>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology,
NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana
perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*
Length = 373
Score = 31.4 bits (72), Expect = 0.037
Identities = 6/33 (18%), Positives = 14/33 (42%)
Query: 60 DYPDALEMVASGKCPVRKLITHNFKLEEAVEAF 92
+ ++ K V L++ L++ +AF
Sbjct: 326 EVSRLVDDYMKKKINVNFLVSTKLTLDQINKAF 358
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 30.9 bits (70), Expect = 0.054
Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGM--GPQMVSVPLVNACAKEIDIL-SCFRYVNDY 61
+ G L + V + GG ++ G G + + K I+ S +
Sbjct: 311 FEHTGRVT-FGLSVIVARRGGTVVTCGSSSGY-LHTFDNRYLWMKLKKIVGSHGANHEEQ 368
Query: 62 PDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
+ SG V ++ + L EA EA +
Sbjct: 369 QATNRLFESGA--VVPAMSAVYPLAEAAEACR 398
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 30.6 bits (70), Expect = 0.066
Identities = 16/100 (16%), Positives = 38/100 (38%), Gaps = 15/100 (15%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGM-GPQMVSVPLVNACAKEIDILSCF--RYVNDY 61
+DP+G + G+L++VG + ++ + + ++ ++ +
Sbjct: 232 VDPIGGPA-FDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTH 290
Query: 62 PDAL--------EMVASGKCPVRKLITHNFKLEEAVEAFK 93
D L ++VA G P ++ L E +A +
Sbjct: 291 ADYLYETQAGLEKLVAEGMRPP---VSARIPLSEGRQALQ 327
>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase
(CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias}
SCOP: b.35.1.2 c.2.1.1
Length = 374
Score = 30.7 bits (70), Expect = 0.067
Identities = 8/33 (24%), Positives = 13/33 (39%)
Query: 60 DYPDALEMVASGKCPVRKLITHNFKLEEAVEAF 92
P ++ K + + ITH LE +A
Sbjct: 327 GVPKMVKAYLDKKVKLDEFITHRMPLESVNDAI 359
>3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei
methyltransferase; cobalamin-independent, surface
entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A
3pph_A 3ppc_A
Length = 789
Score = 30.6 bits (69), Expect = 0.079
Identities = 8/35 (22%), Positives = 18/35 (51%)
Query: 74 PVRKLITHNFKLEEAVEAFKTASKKADDTIKIMIH 108
P+R + L A ++F+ A+ +++ +I H
Sbjct: 645 PLRAGKERSDYLNWAAQSFRVATSGVENSTQIHSH 679
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.099
Identities = 19/113 (16%), Positives = 30/113 (26%), Gaps = 41/113 (36%)
Query: 6 DPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAK------EIDILSCFRYVN 59
D LG N + IN ++ + + +V K EI VN
Sbjct: 1800 DELGRSNYGMIAINPGRVA-----ASFSQEALQY-VVERVGKRTGWLVEI--------VN 1845
Query: 60 D------YPDALEMVASGKCPVRKLITHNFKLEEAVEAFKTASKKADDTIKIM 106
Y VA+G L+ + D I++
Sbjct: 1846 YNVENQQY------VAAG---------DLRALDTVTNVLNFIKLQKIDIIELQ 1883
Score = 25.8 bits (56), Expect = 4.1
Identities = 17/86 (19%), Positives = 25/86 (29%), Gaps = 16/86 (18%)
Query: 30 VGMGPQM---VSVPLVNACAKEIDILSCFRY-------VNDYPDALEMVASGKCPVRKLI 79
GMG M + D Y V + P L + G K I
Sbjct: 1629 QGMG--MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGG--EKGKRI 1684
Query: 80 THNFK--LEEAVEAFKTASKKADDTI 103
N+ + E + K ++K I
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEI 1710
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 29.5 bits (67), Expect = 0.20
Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 11/94 (11%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCF------RYV 58
++ L N L+ +++ GG++++VG + + + AKE I+
Sbjct: 244 IEMLANVN-LSKDLSLLSHGGRVIVVGSRGT-IEINPRDTMAKESSIIGVTLFSSTKEEF 301
Query: 59 NDYPDAL-EMVASGKCPVRKLITHNFKLEEAVEA 91
Y AL + G ++ +I + LE+ EA
Sbjct: 302 QQYAAALQAGMEIGW--LKPVIGSQYPLEKVAEA 333
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 29.1 bits (66), Expect = 0.26
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 18 INVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDIL-SCFRYVNDYPDALEMVASG--KCP 74
N + GG +LVG+ P+ + +P+ + I I+ S D +AL+ A G K
Sbjct: 248 YNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFAAEGKVKTI 307
Query: 75 VRKLITHNFKLEEAVEAFK 93
+ LE+ E F
Sbjct: 308 IEV-----QPLEKINEVFD 321
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 28.3 bits (64), Expect = 0.46
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 8/79 (10%)
Query: 18 INVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDIL-SCFRYVNDYPDALEMVASG--KCP 74
I + + GG + L G+ P P+ + K I I S +D ++L+ A G K
Sbjct: 250 IGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESLDFAAHGDVKAT 309
Query: 75 VRKLITHNFKLEEAVEAFK 93
V KL++ + F
Sbjct: 310 VST-----AKLDDVNDVFG 323
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; structural genomics, target 6426D,
PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A
3t0c_A
Length = 755
Score = 28.3 bits (63), Expect = 0.47
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 85 LEEAVEAFKTASKKADDTIKIMIH 108
L++AV AF A+ D +I H
Sbjct: 609 LDDAVHAFHIATSSVKDETQIHTH 632
>2lfe_A E3 ubiquitin-protein ligase HECW2; structural genomics, northeast
structural genomics consortiu SGC; NMR {Homo sapiens}
Length = 138
Score = 27.8 bits (61), Expect = 0.53
Identities = 16/79 (20%), Positives = 27/79 (34%), Gaps = 16/79 (20%)
Query: 2 MLYLDPLGTEN---CLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYV 58
+ ++D N G+ T+ G + + GP + E +I CF+Y
Sbjct: 70 LYHIDENSPANFWDSKNRGVTGTQKGQIVWRIEPGPYFM----------EPEIKICFKYY 119
Query: 59 NDYPDALEMVASG---KCP 74
+ AL K P
Sbjct: 120 HGISGALRATTPCITVKNP 138
>1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; TIM barrel, methyltetrahydrofolate,
zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A
1xdj_A 1xr2_A* 1xpg_A*
Length = 766
Score = 27.9 bits (62), Expect = 0.68
Identities = 8/25 (32%), Positives = 12/25 (48%), Gaps = 1/25 (4%)
Query: 85 LEEAVEAFKTASKKADDTIKIMIHC 109
E A+ AF A+ +T +I H
Sbjct: 628 FEWAINAFNLAANARPET-QIHAHM 651
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 1.5
Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 18/59 (30%)
Query: 17 GINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPV 75
+N+ + GP + + V ACA V +E + SGK +
Sbjct: 1087 WVNMLLISSS------GP-IKTP--VGACAT---------SVESVDIGVETILSGKARI 1127
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 26.4 bits (59), Expect = 2.1
Identities = 6/29 (20%), Positives = 10/29 (34%), Gaps = 2/29 (6%)
Query: 65 LEMVASGKCPVRKLITHNFKLEEAVEAFK 93
+V S K + I + L + A
Sbjct: 291 FGLVNSKK--LNIKIYKTYPLRDYRTAAA 317
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 26.4 bits (59), Expect = 2.2
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 65 LEMVASGKCPVRKLITHNFKLEEAVEA 91
++ASG V + L++A A
Sbjct: 284 FSLIASGVIKVDVAEQQKYPLKDAQRA 310
>1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine
methyltransferase; methionine, synthase,
methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis
thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A
1u22_A*
Length = 765
Score = 26.3 bits (58), Expect = 2.2
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 85 LEEAVEAFKTASKKADDTIKIMIH 108
L+ AV +F+ + D+ +I H
Sbjct: 624 LDWAVHSFRITNCGVQDSTQIHTH 647
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 26.0 bits (58), Expect = 2.8
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 63 DALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
+ V +G + + F L EA A K
Sbjct: 288 CLFDAVKAGV--LHSSVAKTFPLREAAAAHK 316
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha
helix, antivirus, antiviral protein; 2.80A {Homo
sapiens}
Length = 472
Score = 26.1 bits (57), Expect = 2.9
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 84 KLEEAVEAFKTA-SKKADDTIKIMIHCRQG 112
+ EEA F+ SK+ K ++H R G
Sbjct: 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 26.0 bits (58), Expect = 3.1
Identities = 18/118 (15%), Positives = 35/118 (29%), Gaps = 32/118 (27%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGM-----------------GPQMVSVPLVNACAK 47
LD L +N G+++ K G +L G Q+ V + +
Sbjct: 213 LDCLCGDN-TGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEE 271
Query: 48 EIDILSCF----RYVNDYPD--------ALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
I + + + K ++ ++ + LEE EA +
Sbjct: 272 NKVIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKK--IKPVVDSLWALEEVKEAMQ 327
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 26.0 bits (58), Expect = 3.2
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 65 LEMVASGKCPVRKLITHNFKLEEAVEA 91
+M+ASGK V + L++A +A
Sbjct: 284 FDMLASGKLKVD--GIEQYALKDAAKA 308
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 25.6 bits (57), Expect = 3.5
Identities = 13/85 (15%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 18 INVTKMGGKLMLVGM-GPQMVSVPLVNACAKEIDIL-SCFRYVNDYPDALEMV------- 68
+ + GG+L+ +G ++ +P + + + +L + +E
Sbjct: 205 LGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPR 264
Query: 69 ASGKCPVRKLITHNFKLEEAVEAFK 93
+ +R ++ F EA AF+
Sbjct: 265 LGRE--LRPVVGPVFPFAEAEAAFR 287
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate
binding protein, transport protein; 1.71A {Escherichia
coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Length = 321
Score = 25.2 bits (55), Expect = 5.2
Identities = 5/33 (15%), Positives = 13/33 (39%)
Query: 40 PLVNACAKEIDILSCFRYVNDYPDALEMVASGK 72
P + K++ + + DY ++ + K
Sbjct: 35 PFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNK 67
>3nut_A Precorrin-3 methylase; vitamin B12 pathway, cobalamin,
methyltransferase, transfera; HET: SAH; 2.22A
{Rhodobacter capsulatus}
Length = 251
Score = 25.0 bits (55), Expect = 5.8
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 22 KMGGKLMLVGMGP 34
M G + + G+GP
Sbjct: 6 HMSGWVTVAGLGP 18
>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis;
HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*
Length = 294
Score = 24.8 bits (55), Expect = 7.3
Identities = 6/23 (26%), Positives = 10/23 (43%), Gaps = 5/23 (21%)
Query: 58 VND-----YPDALEMVASGKCPV 75
+ND P A++ V G +
Sbjct: 121 INDIWGFRQPGAIDAVRDGNSGL 143
>2kwy_A V-type proton ATPase subunit G; proton transport; NMR
{Saccharomyces cerevisiae}
Length = 43
Score = 23.1 bits (49), Expect = 7.4
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 87 EAVEAFKTASKKADDTIKIMI 107
E E K A KK DD +KI+I
Sbjct: 21 ELAEIKKIAEKKKDDVVKILI 41
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain,
signaling protein; 2.04A {Bordetella pertussis} PDB:
3mpl_A
Length = 267
Score = 24.6 bits (54), Expect = 7.5
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 55 FRYVNDYPDALEMVASGK 72
++ +A+ MVA+G+
Sbjct: 163 VVTADNPSEAMLMVANGQ 180
>3rpd_A Methionine synthase (B12-independent); structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP}
Length = 357
Score = 24.6 bits (54), Expect = 9.4
Identities = 2/25 (8%), Positives = 7/25 (28%)
Query: 85 LEEAVEAFKTASKKADDTIKIMIHC 109
+ + + A + + I
Sbjct: 203 NDWGIACLERAIEGLKCETAVHICY 227
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.411
Gapped
Lambda K H
0.267 0.0585 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,685,466
Number of extensions: 90441
Number of successful extensions: 530
Number of sequences better than 10.0: 1
Number of HSP's gapped: 502
Number of HSP's successfully gapped: 60
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.7 bits)