RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy12355
(112 letters)
>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol
dehydrogenase) {Silverleaf whitefly (Bemisia
argentifolii) [TaxId: 77855]}
Length = 170
Score = 59.2 bits (142), Expect = 7e-13
Identities = 49/69 (71%), Positives = 57/69 (82%)
Query: 4 YLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPD 63
+D G E C+T+GIN+T+ GG LMLVGMG QMV+VPLVNACA+EIDI S FRY NDYP
Sbjct: 102 TIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPI 161
Query: 64 ALEMVASGK 72
ALEMVASG+
Sbjct: 162 ALEMVASGR 170
>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol
dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 171
Score = 54.5 bits (130), Expect = 4e-11
Identities = 29/69 (42%), Positives = 44/69 (63%)
Query: 4 YLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRYVNDYPD 63
++ G E + GI T+ GG L+LVG+G +M +VPL++A +E+DI FRY N +P
Sbjct: 101 TIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPV 160
Query: 64 ALEMVASGK 72
A+ M+AS
Sbjct: 161 AISMLASKS 169
>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon
Aeropyrum pernix [TaxId: 56636]}
Length = 172
Score = 36.1 bits (82), Expect = 2e-04
Identities = 10/70 (14%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 4 YLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYP 62
+D +G++ + + G+L++VG + P + + E+ +
Sbjct: 104 AMDFVGSQATVDYTPYLLGRMGRLIIVGY-GGELRFPTIRVISSEVSFEGSLVGNYVELH 162
Query: 63 DALEMVASGK 72
+ + + GK
Sbjct: 163 ELVTLALQGK 172
>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga
maritima [TaxId: 2336]}
Length = 182
Score = 35.3 bits (80), Expect = 5e-04
Identities = 10/70 (14%), Positives = 21/70 (30%), Gaps = 4/70 (5%)
Query: 4 YLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNA---CAKEIDILSCFRY-VN 59
L+ G L G + + GG + G+ VP K + +
Sbjct: 104 ILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTS 163
Query: 60 DYPDALEMVA 69
+ + + +
Sbjct: 164 HFVKTVSITS 173
>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 166
Score = 33.1 bits (74), Expect = 0.003
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 18 INVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDIL-SCFRYVNDYPDALEMVASG 71
I + + GG + LVG+ P P+ + K + I S D +AL+ G
Sbjct: 111 IGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEALDFAGEG 165
>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase
{Acinetobacter calcoaceticus [TaxId: 471]}
Length = 174
Score = 32.2 bits (72), Expect = 0.007
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 6/70 (8%)
Query: 9 GTENCLTLGINVTKMGGKLMLVGMGP--QMVSVPLVNACAKEIDILSCF----RYVNDYP 62
G+ L G++ + GK+ +VG + + IL P
Sbjct: 105 GSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKFIP 164
Query: 63 DALEMVASGK 72
+ + + GK
Sbjct: 165 ELVRLYQQGK 174
>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol
dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}
Length = 174
Score = 30.7 bits (68), Expect = 0.023
Identities = 9/78 (11%), Positives = 22/78 (28%), Gaps = 6/78 (7%)
Query: 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVGMGPQMVSVPL----VNACAKEIDILSCFR 56
+ + G L+ + + K GG + + ++ + I
Sbjct: 97 VDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLC 156
Query: 57 YVN-DYPDAL-EMVASGK 72
+ L +MV +
Sbjct: 157 PGGRLRAERLRDMVVYNR 174
>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 168
Score = 30.1 bits (66), Expect = 0.042
Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 10 TENCLTLGINVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDIL-SCFRYVNDYPDALEMV 68
++ N + GG +LVG+ P+ + +P+ + I I+ S D +AL+
Sbjct: 103 SKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQFA 162
Query: 69 ASGK 72
A GK
Sbjct: 163 AEGK 166
>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon
Sulfolobus solfataricus [TaxId: 2287]}
Length = 170
Score = 29.7 bits (65), Expect = 0.046
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 1/56 (1%)
Query: 18 INVTKMGGKLMLVGMGPQMVSVPLVNACAKEIDILSCFRY-VNDYPDALEMVASGK 72
GK ++VG+ + EI + +D+ + + +GK
Sbjct: 115 PKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGIMRLAEAGK 170
>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus
caballus) [TaxId: 9796]}
Length = 176
Score = 28.0 bits (61), Expect = 0.20
Identities = 4/78 (5%), Positives = 19/78 (24%), Gaps = 6/78 (7%)
Query: 1 MMLYLDPLGTENCLTLGINVTKMGGKLMLVG--MGPQMVSVPLVNACAKEIDILSC---- 54
+ + +G + + ++ + + ++
Sbjct: 99 VDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGG 158
Query: 55 FRYVNDYPDALEMVASGK 72
F+ + P + + K
Sbjct: 159 FKSKDSVPKLVADFMAKK 176
>d1e3ja1 b.35.1.2 (A:4-142,A:313-351) Ketose reductase (sorbitol
dehydrogenase) {Silverleaf whitefly (Bemisia
argentifolii) [TaxId: 77855]}
Length = 178
Score = 27.7 bits (60), Expect = 0.28
Identities = 16/24 (66%), Positives = 20/24 (83%)
Query: 88 AVEAFKTASKKADDTIKIMIHCRQ 111
V+AF+ A KKAD+TIK+MI CRQ
Sbjct: 155 TVDAFEAARKKADNTIKVMISCRQ 178
>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus
callarias) [TaxId: 8053]}
Length = 175
Score = 27.3 bits (59), Expect = 0.33
Identities = 6/49 (12%), Positives = 11/49 (22%), Gaps = 4/49 (8%)
Query: 28 MLVGMGPQMVSVPLVNACAKEIDILSC----FRYVNDYPDALEMVASGK 72
+LVG F+ + P ++ K
Sbjct: 127 VLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPKMVKAYLDKK 175
>d1vk9a_ c.97.1.3 (A:) Hypothetical protein TM1506 {Thermotoga
maritima [TaxId: 2336]}
Length = 147
Score = 25.9 bits (57), Expect = 1.0
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 12/79 (15%)
Query: 22 KMGGK---LMLVGMGPQMVSVPLVNACAKEI----DILSCFRYVNDYPDALEMVASGKCP 74
KM GK L+ M P + +++ A ++ F Y P L CP
Sbjct: 68 KMVGKAAASFLLKMKPDHIHAKVISKPALKLMNEYGQS--FSYDEKIPFVLGKDGKSMCP 125
Query: 75 VRKLITHNFKLEEAVEAFK 93
KL+ +++ E +
Sbjct: 126 FEKLVLE---MDDPEEIIR 141
>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas
putida [TaxId: 303]}
Length = 195
Score = 25.2 bits (54), Expect = 1.7
Identities = 11/82 (13%), Positives = 24/82 (29%), Gaps = 14/82 (17%)
Query: 5 LDPLGTENCLTLGINVTKMGGKLMLVGMGPQ-------------MVSVPLVNACAKEIDI 51
L + VT++ GK+ + G+ +S+ AK
Sbjct: 114 AKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSIRFGLGWAKSHSF 173
Query: 52 LSCFRYVNDY-PDALEMVASGK 72
+ V Y ++ + +
Sbjct: 174 HTGQTPVMKYNRALMQAIMWDR 195
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain
3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 131
Score = 24.4 bits (53), Expect = 2.5
Identities = 11/58 (18%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 36 MVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLITHNFKLEEAVEAFK 93
+ +P+ + E + + LE + + K + + L +A+EAFK
Sbjct: 74 LDDIPVEDVRRFEKEFYLWLD--QNGQHLLEHIRTTKD-----LPNEDDLNQAIEAFK 124
>d1ve2a1 c.90.1.1 (A:1-235) Uroporphyrin-III C-methyltransferase
(SUMT, UROM, CobA) {Thermus thermophilus [TaxId: 274]}
Length = 235
Score = 24.1 bits (51), Expect = 4.3
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 6/63 (9%)
Query: 23 MGGKLMLVGMGP---QMVSVPLVNACAKEIDILSCFRYVNDYPDALEMVASGKCPVRKLI 79
M GK+ LVG G + +++ + + +++ R V+ P L + PV K
Sbjct: 1 MRGKVYLVGAGFGGPEHLTLKALRVL-EVAEVVLHDRLVH--PGVLALAKGELVPVGKEG 57
Query: 80 THN 82
Sbjct: 58 YGG 60
>d1u1ha2 c.1.22.2 (A:396-760)
5-methyltetrahydropteroyltriglutamate--homocysteine
methyltransferase MetE {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 365
Score = 24.3 bits (52), Expect = 4.5
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 81 HNFKLEEAVEAFKTASKKADDTIKIMIHCR 110
H F L+ AV +F+ + D+ +I H
Sbjct: 225 HAFYLDWAVHSFRITNCGVQDSTQIHTHMC 254
>d1eyba_ b.82.1.4 (A:) Homogentisate dioxygenase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 439
Score = 24.1 bits (52), Expect = 5.2
Identities = 6/25 (24%), Positives = 10/25 (40%)
Query: 86 EEAVEAFKTASKKADDTIKIMIHCR 110
E+A + + AD T+ M
Sbjct: 378 EKASKVKLAPERIADGTMAFMFESS 402
>d1s4da_ c.90.1.1 (A:) Uroporphyrin-III C-methyltransferase (SUMT,
UROM, CobA) {Pseudomonas denitrificans [TaxId: 43306]}
Length = 265
Score = 23.7 bits (50), Expect = 7.8
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 25 GKLMLVGMGP---QMVSVPLVNACAKEIDILSCFRYVND-----YPDALEMVASGKCPVR 76
G + LVG GP ++++ NA ++ D++ VN+ + +GK +
Sbjct: 10 GSVWLVGAGPGDPGLLTLHAANAL-RQADVIVHDALVNEDCLKLARPGAVLEFAGKRGGK 68
Query: 77 KLITHNFKLEEAVEAFK 93
VE +
Sbjct: 69 PSPKQRDISLRLVELAR 85
>d1pjqa2 c.90.1.1 (A:216-457) Siroheme synthase CysG, domains 4 and
5 {Salmonella typhimurium [TaxId: 90371]}
Length = 242
Score = 23.4 bits (49), Expect = 8.9
Identities = 16/89 (17%), Positives = 38/89 (42%), Gaps = 5/89 (5%)
Query: 25 GKLMLVGMGP---QMVSVPLVNACAKEIDILSCFRYVNDY-PDALEMVASGKCPVRKLIT 80
G+++LVG GP ++++ + ++ DI+ R V+D + + A ++
Sbjct: 1 GEVVLVGAGPGDAGLLTLKGLQQI-QQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGY 59
Query: 81 HNFKLEEAVEAFKTASKKADDTIKIMIHC 109
H EE + ++K +++
Sbjct: 60 HCVPQEEINQILLREAQKGKRVVRLKGGD 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.411
Gapped
Lambda K H
0.267 0.0649 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 410,683
Number of extensions: 16862
Number of successful extensions: 75
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 27
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 47 (22.1 bits)