Query psy12356
Match_columns 400
No_of_seqs 188 out of 1697
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 16:57:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12356.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12356hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nr0_A Actin interacting prote 100.0 2.3E-39 7.9E-44 336.5 34.2 334 4-367 60-569 (611)
2 3iz6_a 40S ribosomal protein R 100.0 2.7E-38 9.1E-43 309.4 26.0 280 4-367 67-377 (380)
3 3frx_A Guanine nucleotide-bind 100.0 1.5E-37 5.2E-42 296.9 29.0 270 4-365 18-317 (319)
4 1vyh_C Platelet-activating fac 100.0 2.6E-37 8.8E-42 305.7 29.5 267 4-363 109-409 (410)
5 4g56_B MGC81050 protein; prote 100.0 5.2E-37 1.8E-41 298.2 29.4 276 4-368 43-346 (357)
6 3fm0_A Protein CIAO1; WDR39,SG 100.0 7.2E-37 2.5E-41 295.4 29.7 286 5-368 18-338 (345)
7 1nr0_A Actin interacting prote 100.0 6.7E-37 2.3E-41 318.0 31.6 328 4-364 148-610 (611)
8 1got_B GT-beta; complex (GTP-b 100.0 3.5E-36 1.2E-40 289.8 31.7 261 4-362 56-340 (340)
9 4gqb_B Methylosome protein 50; 100.0 6.6E-37 2.3E-41 296.4 26.5 279 4-365 31-331 (344)
10 3ow8_A WD repeat-containing pr 100.0 2.9E-36 9.9E-41 288.7 29.4 270 4-364 33-320 (321)
11 2xzm_R RACK1; ribosome, transl 100.0 1E-35 3.5E-40 286.7 32.6 301 4-365 22-340 (343)
12 3dw8_B Serine/threonine-protei 100.0 2.3E-36 8E-41 299.2 27.4 341 4-364 29-445 (447)
13 2pbi_B Guanine nucleotide-bind 100.0 1.8E-35 6.3E-40 286.8 30.7 264 4-362 65-354 (354)
14 4aow_A Guanine nucleotide-bind 100.0 1.9E-35 6.5E-40 281.4 29.8 288 4-367 39-339 (340)
15 2ymu_A WD-40 repeat protein; u 100.0 1.3E-35 4.6E-40 303.8 30.7 289 4-362 263-577 (577)
16 2ynn_A Coatomer subunit beta'; 100.0 2.5E-34 8.5E-39 272.6 33.4 271 4-365 14-302 (304)
17 4ery_A WD repeat-containing pr 100.0 1.8E-34 6.2E-39 273.3 31.6 269 4-364 24-311 (312)
18 2j04_B YDR362CP, TAU91; beta p 100.0 1.2E-35 4.1E-40 303.1 24.2 293 17-366 175-518 (524)
19 2ymu_A WD-40 repeat protein; u 100.0 1.3E-34 4.3E-39 296.6 31.7 291 4-364 222-538 (577)
20 4e54_B DNA damage-binding prot 100.0 4.7E-35 1.6E-39 291.3 25.7 283 5-366 121-431 (435)
21 2pm7_B Protein transport prote 100.0 4.9E-34 1.7E-38 269.6 30.0 263 4-367 10-287 (297)
22 1erj_A Transcriptional repress 100.0 4.6E-34 1.6E-38 280.6 29.3 292 4-365 65-389 (393)
23 3bg1_A Protein SEC13 homolog; 100.0 3.8E-34 1.3E-38 272.9 26.6 267 4-375 14-303 (316)
24 2hes_X YDR267CP; beta-propelle 100.0 4.7E-34 1.6E-38 273.9 25.9 269 4-365 15-328 (330)
25 2pm9_A Protein WEB1, protein t 100.0 1.9E-34 6.3E-39 282.5 20.5 313 4-366 13-415 (416)
26 3ei3_B DNA damage-binding prot 100.0 6E-33 2.1E-37 270.1 30.2 283 4-365 74-382 (383)
27 3dm0_A Maltose-binding peripla 100.0 4.9E-33 1.7E-37 292.8 29.4 295 4-364 383-692 (694)
28 1r5m_A SIR4-interacting protei 100.0 1.2E-32 4E-37 269.2 28.4 324 4-364 46-424 (425)
29 1k8k_C P40, ARP2/3 complex 41 100.0 4.2E-32 1.4E-36 261.5 30.1 324 4-368 9-364 (372)
30 3dwl_C Actin-related protein 2 100.0 3.5E-33 1.2E-37 270.7 20.0 322 4-363 12-377 (377)
31 3zwl_B Eukaryotic translation 100.0 2E-31 6.9E-36 255.5 31.5 290 4-366 33-347 (369)
32 3vl1_A 26S proteasome regulato 100.0 1.2E-31 4E-36 263.5 29.1 292 5-365 99-419 (420)
33 4gqb_B Methylosome protein 50; 100.0 4E-32 1.4E-36 262.8 25.1 231 5-288 84-330 (344)
34 3sfz_A APAF-1, apoptotic pepti 100.0 1.3E-31 4.4E-36 298.4 30.9 321 4-366 616-1035(1249)
35 1gxr_A ESG1, transducin-like e 100.0 2.8E-31 9.7E-36 251.6 28.3 296 3-363 9-335 (337)
36 4h5i_A Guanine nucleotide-exch 100.0 3.2E-32 1.1E-36 265.3 22.2 274 4-366 15-344 (365)
37 2ynn_A Coatomer subunit beta'; 100.0 5.5E-31 1.9E-35 249.5 28.5 245 48-374 5-267 (304)
38 2oaj_A Protein SNI1; WD40 repe 100.0 3E-31 1E-35 287.2 27.7 159 4-200 59-245 (902)
39 3sfz_A APAF-1, apoptotic pepti 100.0 7.1E-31 2.4E-35 292.4 30.9 314 4-366 658-1117(1249)
40 3jrp_A Fusion protein of prote 100.0 2.5E-30 8.5E-35 249.1 29.7 263 4-367 12-289 (379)
41 2oaj_A Protein SNI1; WD40 repe 100.0 3.7E-31 1.3E-35 286.5 26.5 337 4-363 99-659 (902)
42 3f3f_A Nucleoporin SEH1; struc 100.0 3.1E-30 1.1E-34 244.1 28.6 297 4-367 12-339 (351)
43 3i2n_A WD repeat-containing pr 100.0 9.7E-31 3.3E-35 250.2 24.5 295 4-365 19-353 (357)
44 3mkq_A Coatomer beta'-subunit; 100.0 6.9E-30 2.4E-34 271.8 33.3 298 4-365 14-386 (814)
45 3k26_A Polycomb protein EED; W 100.0 5.4E-30 1.8E-34 245.5 29.1 301 4-364 19-365 (366)
46 1sq9_A Antiviral protein SKI8; 100.0 8.7E-30 3E-34 248.0 30.8 288 4-366 17-396 (397)
47 4gga_A P55CDC, cell division c 100.0 4.6E-30 1.6E-34 254.0 29.1 268 6-365 108-395 (420)
48 1vyh_C Platelet-activating fac 100.0 8.6E-31 2.9E-35 258.9 23.6 236 4-287 151-409 (410)
49 3mkq_A Coatomer beta'-subunit; 100.0 3.4E-30 1.2E-34 274.2 29.9 303 4-362 56-420 (814)
50 3gre_A Serine/threonine-protei 100.0 9.6E-31 3.3E-35 259.0 23.6 302 4-362 64-437 (437)
51 4a11_B DNA excision repair pro 100.0 1E-29 3.6E-34 247.2 30.4 308 4-367 44-367 (408)
52 1pgu_A Actin interacting prote 100.0 1.2E-29 4.1E-34 260.5 31.4 214 6-265 67-293 (615)
53 1got_B GT-beta; complex (GTP-b 100.0 6.7E-30 2.3E-34 245.9 26.7 229 5-286 99-340 (340)
54 4ggc_A P55CDC, cell division c 100.0 2.2E-29 7.7E-34 237.1 29.8 270 6-365 28-315 (318)
55 3odt_A Protein DOA1; ubiquitin 100.0 1.8E-29 6.3E-34 236.9 28.9 266 4-367 19-298 (313)
56 3ow8_A WD repeat-containing pr 100.0 4.2E-30 1.4E-34 245.8 24.3 226 4-287 81-319 (321)
57 2j04_A TAU60, YPL007P, hypothe 100.0 1.5E-30 5.3E-35 262.7 21.6 304 4-378 16-374 (588)
58 3vl1_A 26S proteasome regulato 100.0 2.8E-30 9.7E-35 253.6 21.7 255 6-368 59-368 (420)
59 3v7d_B Cell division control p 100.0 1.8E-29 6.1E-34 251.8 27.7 303 6-363 125-461 (464)
60 1erj_A Transcriptional repress 100.0 1.1E-29 3.7E-34 249.4 24.2 242 6-287 126-387 (393)
61 1pgu_A Actin interacting prote 100.0 3.7E-29 1.3E-33 256.9 29.0 314 4-365 161-614 (615)
62 3gre_A Serine/threonine-protei 100.0 3E-30 1E-34 255.4 17.8 291 10-367 34-361 (437)
63 4g56_B MGC81050 protein; prote 100.0 3.5E-29 1.2E-33 243.0 23.9 200 5-255 96-302 (357)
64 1yfq_A Cell cycle arrest prote 100.0 2.2E-28 7.5E-33 232.9 29.0 270 4-363 12-322 (342)
65 2j04_B YDR362CP, TAU91; beta p 100.0 1.3E-29 4.4E-34 258.6 21.7 269 4-327 208-506 (524)
66 3iz6_a 40S ribosomal protein R 100.0 3.6E-29 1.2E-33 244.5 22.5 257 47-367 57-331 (380)
67 2pbi_B Guanine nucleotide-bind 100.0 1.6E-28 5.5E-33 237.9 25.6 233 5-286 108-354 (354)
68 2pm9_A Protein WEB1, protein t 100.0 6.6E-29 2.3E-33 243.0 23.1 277 4-326 68-402 (416)
69 4gq1_A NUP37; propeller, trans 100.0 2.6E-29 9E-34 246.9 20.1 263 6-364 92-388 (393)
70 3frx_A Guanine nucleotide-bind 100.0 3.5E-28 1.2E-32 231.9 27.2 232 4-326 66-305 (319)
71 2aq5_A Coronin-1A; WD40 repeat 100.0 1.3E-28 4.4E-33 241.6 24.0 293 6-381 37-357 (402)
72 4aez_A CDC20, WD repeat-contai 100.0 3.5E-28 1.2E-32 238.8 26.9 267 6-367 96-382 (401)
73 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1E-27 3.4E-32 238.4 30.1 284 6-365 122-442 (445)
74 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-28 9E-33 235.3 25.1 250 4-326 62-323 (345)
75 2hes_X YDR267CP; beta-propelle 100.0 1.5E-28 5.1E-33 235.6 22.5 242 4-287 59-326 (330)
76 3mmy_A MRNA export factor; mRN 100.0 4.1E-28 1.4E-32 232.3 24.1 275 4-363 40-344 (368)
77 3jro_A Fusion protein of prote 100.0 4.1E-28 1.4E-32 258.0 25.5 261 4-365 10-285 (753)
78 2xzm_R RACK1; ribosome, transl 100.0 1.2E-27 4.1E-32 230.2 24.7 226 4-287 77-338 (343)
79 3vu4_A KMHSV2; beta-propeller 100.0 1.4E-27 4.6E-32 231.5 24.8 298 4-367 20-338 (355)
80 1gxr_A ESG1, transducin-like e 100.0 4.4E-27 1.5E-31 222.6 27.8 257 4-326 52-325 (337)
81 3lrv_A PRE-mRNA-splicing facto 100.0 8.7E-28 3E-32 231.0 21.6 269 8-377 41-343 (343)
82 2xyi_A Probable histone-bindin 100.0 3E-27 1E-31 234.7 24.1 257 4-365 129-410 (430)
83 1p22_A F-BOX/WD-repeat protein 100.0 5.2E-27 1.8E-31 232.9 25.4 269 6-367 136-416 (435)
84 2j04_A TAU60, YPL007P, hypothe 100.0 2.5E-27 8.6E-32 239.3 20.5 246 4-326 86-349 (588)
85 4ery_A WD repeat-containing pr 100.0 3.4E-26 1.2E-30 216.3 26.3 226 4-286 66-309 (312)
86 2w18_A PALB2, fancn, partner a 100.0 1.3E-26 4.3E-31 221.1 23.2 209 4-363 112-355 (356)
87 3dm0_A Maltose-binding peripla 99.9 9.4E-27 3.2E-31 244.8 24.1 203 4-264 431-641 (694)
88 4h5i_A Guanine nucleotide-exch 99.9 2.1E-26 7.1E-31 224.2 23.2 196 6-255 136-344 (365)
89 4aow_A Guanine nucleotide-bind 99.9 1.8E-25 6.2E-30 212.3 27.3 235 46-366 28-287 (340)
90 4e54_B DNA damage-binding prot 99.9 3.5E-26 1.2E-30 227.2 22.9 203 67-367 118-329 (435)
91 1r5m_A SIR4-interacting protei 99.9 4.4E-26 1.5E-30 222.4 23.2 260 5-326 110-413 (425)
92 2pm7_B Protein transport prote 99.9 7.2E-26 2.5E-30 213.5 22.3 207 4-255 54-286 (297)
93 2aq5_A Coronin-1A; WD40 repeat 99.9 6.9E-26 2.3E-30 222.2 22.9 215 4-263 82-308 (402)
94 4gga_A P55CDC, cell division c 99.9 3.1E-25 1.1E-29 219.2 27.4 231 5-289 149-395 (420)
95 2vdu_B TRNA (guanine-N(7)-)-me 99.9 5.9E-25 2E-29 219.2 27.5 309 4-371 5-397 (450)
96 3k26_A Polycomb protein EED; W 99.9 1.4E-25 4.7E-30 214.8 20.7 252 4-326 70-354 (366)
97 3dw8_B Serine/threonine-protei 99.9 3.1E-25 1.1E-29 219.1 23.5 261 67-367 27-375 (447)
98 4ggc_A P55CDC, cell division c 99.9 2E-24 6.9E-29 203.1 27.5 230 5-288 69-314 (318)
99 3ei3_B DNA damage-binding prot 99.9 1.6E-25 5.5E-30 217.6 20.5 241 4-287 119-380 (383)
100 3jrp_A Fusion protein of prote 99.9 8.5E-25 2.9E-29 210.3 24.9 208 4-256 56-289 (379)
101 3odt_A Protein DOA1; ubiquitin 99.9 1E-24 3.4E-29 204.5 24.6 229 4-290 60-297 (313)
102 3bg1_A Protein SEC13 homolog; 99.9 1.1E-25 3.6E-30 214.4 17.8 205 4-255 58-294 (316)
103 4aez_A CDC20, WD repeat-contai 99.9 1.6E-24 5.4E-29 212.7 25.1 227 4-290 135-381 (401)
104 3i2n_A WD repeat-containing pr 99.9 7.4E-25 2.5E-29 209.2 21.0 233 4-288 66-352 (357)
105 3v7d_B Cell division control p 99.9 5.5E-24 1.9E-28 212.0 28.1 246 4-316 163-442 (464)
106 1k8k_C P40, ARP2/3 complex 41 99.9 2.3E-24 7.9E-29 207.2 24.3 245 69-365 9-274 (372)
107 3dwl_C Actin-related protein 2 99.9 2.1E-25 7E-30 215.9 16.8 206 4-254 56-281 (377)
108 3bws_A Protein LP49; two-domai 99.9 3.7E-24 1.3E-28 211.0 25.9 198 6-262 125-341 (433)
109 3zwl_B Eukaryotic translation 99.9 3E-23 1E-27 198.5 30.0 247 44-367 20-306 (369)
110 1sq9_A Antiviral protein SKI8; 99.9 1.5E-24 5E-29 210.9 18.2 227 4-263 63-330 (397)
111 2ovr_B FBW7, F-BOX/WD repeat p 99.9 4.9E-23 1.7E-27 204.5 27.9 271 4-348 160-445 (445)
112 1yfq_A Cell cycle arrest prote 99.9 3.1E-23 1E-27 197.3 25.3 242 69-367 12-284 (342)
113 1l0q_A Surface layer protein; 99.9 1.7E-22 5.9E-27 196.3 30.2 265 15-376 2-285 (391)
114 4a11_B DNA excision repair pro 99.9 7.9E-24 2.7E-28 205.6 20.5 236 24-367 22-278 (408)
115 4gq1_A NUP37; propeller, trans 99.9 6.3E-24 2.1E-28 208.5 18.9 210 4-253 137-388 (393)
116 3f3f_A Nucleoporin SEH1; struc 99.9 1.1E-22 3.9E-27 192.0 24.2 224 4-256 58-339 (351)
117 3mmy_A MRNA export factor; mRN 99.9 1.7E-22 5.7E-27 193.2 24.3 245 4-327 87-335 (368)
118 2vdu_B TRNA (guanine-N(7)-)-me 99.9 4.7E-22 1.6E-26 198.1 26.9 206 5-252 104-337 (450)
119 3jro_A Fusion protein of prote 99.9 4.4E-23 1.5E-27 219.2 19.6 208 4-256 54-287 (753)
120 1nir_A Nitrite reductase; hemo 99.9 8.1E-22 2.8E-26 201.9 26.5 314 10-374 144-522 (543)
121 1l0q_A Surface layer protein; 99.9 2.3E-21 7.8E-26 188.3 28.1 226 5-290 33-276 (391)
122 1p22_A F-BOX/WD-repeat protein 99.9 1.8E-22 6.2E-27 200.1 19.7 220 4-290 174-415 (435)
123 3lrv_A PRE-mRNA-splicing facto 99.9 3.6E-22 1.2E-26 191.7 18.7 215 84-371 50-298 (343)
124 2xyi_A Probable histone-bindin 99.9 9.9E-22 3.4E-26 194.9 21.7 216 5-254 183-410 (430)
125 3vu4_A KMHSV2; beta-propeller 99.9 1.3E-21 4.4E-26 189.3 20.5 214 69-366 20-272 (355)
126 2w18_A PALB2, fancn, partner a 99.9 2.2E-21 7.5E-26 185.0 16.9 111 6-141 181-315 (356)
127 2ecf_A Dipeptidyl peptidase IV 99.9 5.5E-20 1.9E-24 194.0 27.5 322 5-365 38-459 (741)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 2.8E-20 9.6E-25 184.0 21.4 262 5-365 64-387 (415)
129 3bws_A Protein LP49; two-domai 99.8 2.1E-19 7.1E-24 176.9 22.8 224 4-287 170-430 (433)
130 1k32_A Tricorn protease; prote 99.8 1.4E-19 4.7E-24 198.9 23.7 309 6-367 247-639 (1045)
131 2oit_A Nucleoporin 214KDA; NH2 99.8 2.8E-19 9.5E-24 178.1 19.0 165 5-253 38-222 (434)
132 1xfd_A DIP, dipeptidyl aminope 99.8 1.4E-19 4.9E-24 190.1 17.1 113 5-142 18-145 (723)
133 3hfq_A Uncharacterized protein 99.8 4.8E-18 1.6E-22 162.5 25.4 205 5-254 41-271 (347)
134 1ri6_A Putative isomerase YBHE 99.8 4.7E-18 1.6E-22 161.0 24.9 210 5-254 39-262 (343)
135 2z3z_A Dipeptidyl aminopeptida 99.8 3.3E-18 1.1E-22 179.5 24.4 316 6-367 28-437 (706)
136 2hqs_A Protein TOLB; TOLB, PAL 99.8 9.6E-18 3.3E-22 165.8 25.5 183 14-256 142-346 (415)
137 1nir_A Nitrite reductase; hemo 99.8 1.3E-17 4.4E-22 170.7 26.1 264 5-324 180-495 (543)
138 1z68_A Fibroblast activation p 99.8 3.7E-18 1.3E-22 179.6 22.2 321 7-374 19-451 (719)
139 3u4y_A Uncharacterized protein 99.8 3.3E-17 1.1E-21 155.2 26.0 198 8-255 44-253 (331)
140 2ojh_A Uncharacterized protein 99.8 1.5E-17 5.1E-22 153.3 22.3 113 4-141 42-161 (297)
141 1k32_A Tricorn protease; prote 99.8 1.6E-17 5.4E-22 182.5 24.0 250 4-324 204-488 (1045)
142 3o4h_A Acylamino-acid-releasin 99.8 4.8E-18 1.6E-22 174.6 17.2 191 5-256 23-229 (582)
143 1pby_B Quinohemoprotein amine 99.8 3.4E-16 1.2E-20 147.6 25.7 253 16-376 2-320 (337)
144 3vgz_A Uncharacterized protein 99.7 5.4E-16 1.8E-20 147.6 25.4 206 4-263 41-270 (353)
145 1jmx_B Amine dehydrogenase; ox 99.7 2.3E-16 7.8E-21 149.8 22.6 98 8-130 4-112 (349)
146 2oit_A Nucleoporin 214KDA; NH2 99.7 1.9E-17 6.6E-22 164.7 15.6 121 5-139 94-222 (434)
147 3scy_A Hypothetical bacterial 99.7 2.3E-15 7.8E-20 144.8 29.6 206 5-254 51-291 (361)
148 2ecf_A Dipeptidyl peptidase IV 99.7 7.4E-17 2.5E-21 170.0 17.7 256 5-324 110-441 (741)
149 2ojh_A Uncharacterized protein 99.7 7.2E-16 2.5E-20 142.0 21.4 93 20-140 17-117 (297)
150 1ri6_A Putative isomerase YBHE 99.7 1.4E-15 4.7E-20 143.8 23.7 190 15-254 5-209 (343)
151 1xfd_A DIP, dipeptidyl aminope 99.7 2.1E-16 7.1E-21 166.0 19.2 101 5-130 62-193 (723)
152 4a5s_A Dipeptidyl peptidase 4 99.7 2.7E-16 9.2E-21 166.5 19.5 113 5-141 18-142 (740)
153 3u4y_A Uncharacterized protein 99.7 9.3E-15 3.2E-19 138.2 24.2 191 9-255 3-208 (331)
154 2z3z_A Dipeptidyl aminopeptida 99.7 2.2E-15 7.5E-20 158.0 20.2 261 4-325 82-418 (706)
155 1jof_A Carboxy-CIS,CIS-muconat 99.6 8E-15 2.7E-19 141.8 19.8 204 5-253 41-290 (365)
156 3pe7_A Oligogalacturonate lyas 99.6 1.6E-14 5.4E-19 139.7 19.3 189 9-256 41-275 (388)
157 3hfq_A Uncharacterized protein 99.6 1.2E-13 4.2E-18 131.8 22.7 211 5-253 87-316 (347)
158 1pby_B Quinohemoprotein amine 99.6 7.8E-14 2.7E-18 131.3 20.6 227 5-287 35-308 (337)
159 3fvz_A Peptidyl-glycine alpha- 99.6 3.9E-13 1.3E-17 128.2 25.6 246 3-365 23-322 (329)
160 3vgz_A Uncharacterized protein 99.6 1.9E-13 6.5E-18 129.9 21.1 165 69-262 41-222 (353)
161 1z68_A Fibroblast activation p 99.6 1.3E-14 4.5E-19 152.4 13.5 106 73-256 20-141 (719)
162 4a5s_A Dipeptidyl peptidase 4 99.5 6.4E-13 2.2E-17 140.6 23.6 192 7-256 65-296 (740)
163 3scy_A Hypothetical bacterial 99.5 2.2E-12 7.4E-17 123.9 24.8 206 12-255 10-243 (361)
164 1q7f_A NHL, brain tumor CG1071 99.5 1.1E-11 3.8E-16 114.9 28.6 237 5-365 31-280 (286)
165 3o4h_A Acylamino-acid-releasin 99.5 3.1E-13 1E-17 138.7 19.1 147 69-255 22-185 (582)
166 3azo_A Aminopeptidase; POP fam 99.5 3.9E-12 1.3E-16 132.2 22.6 110 4-130 24-150 (662)
167 1jmx_B Amine dehydrogenase; ox 99.4 2E-12 6.9E-17 122.4 16.9 115 5-143 44-178 (349)
168 2bkl_A Prolyl endopeptidase; m 99.4 1.2E-11 4E-16 130.0 20.4 194 4-253 121-348 (695)
169 3c5m_A Oligogalacturonate lyas 99.4 1.5E-12 5E-17 125.7 12.3 270 6-364 38-381 (396)
170 2oiz_A Aromatic amine dehydrog 99.4 8.9E-11 3E-15 113.5 22.2 114 8-140 54-182 (361)
171 2xdw_A Prolyl endopeptidase; a 99.3 2.3E-10 7.8E-15 120.3 25.5 109 4-140 125-268 (710)
172 3azo_A Aminopeptidase; POP fam 99.3 7.3E-11 2.5E-15 122.5 21.4 214 8-263 81-332 (662)
173 3fvz_A Peptidyl-glycine alpha- 99.3 1.4E-10 4.9E-15 110.2 20.5 215 4-254 91-322 (329)
174 2gop_A Trilobed protease; beta 99.3 2E-10 6.9E-15 109.0 21.0 108 5-141 60-208 (347)
175 1jof_A Carboxy-CIS,CIS-muconat 99.3 3.7E-11 1.3E-15 115.9 15.3 204 6-255 85-342 (365)
176 3pe7_A Oligogalacturonate lyas 99.3 6.5E-11 2.2E-15 114.1 16.8 66 74-142 41-113 (388)
177 1rwi_B Serine/threonine-protei 99.3 2.7E-09 9.3E-14 97.4 25.1 192 5-254 25-222 (270)
178 3e5z_A Putative gluconolactona 99.2 1.4E-09 4.9E-14 101.2 22.9 187 6-253 30-245 (296)
179 2dg1_A DRP35, lactonase; beta 99.2 1.1E-09 3.6E-14 103.6 22.1 191 4-254 6-213 (333)
180 2gop_A Trilobed protease; beta 99.2 7.4E-10 2.5E-14 105.1 20.4 92 5-130 16-124 (347)
181 1yr2_A Prolyl oligopeptidase; 99.2 1.5E-09 5.3E-14 114.6 20.7 110 4-141 163-304 (741)
182 1q7f_A NHL, brain tumor CG1071 99.2 5.6E-09 1.9E-13 96.5 21.8 195 5-255 78-281 (286)
183 1pjx_A Dfpase, DIISOPROPYLFLUO 99.1 1.5E-08 5.1E-13 94.4 24.3 198 6-255 20-257 (314)
184 3c5m_A Oligogalacturonate lyas 99.1 1.4E-09 4.7E-14 104.7 17.3 200 9-255 86-330 (396)
185 2dg1_A DRP35, lactonase; beta 99.1 4.4E-08 1.5E-12 92.4 26.0 197 5-253 46-262 (333)
186 2z2n_A Virginiamycin B lyase; 99.1 4.6E-07 1.6E-11 83.3 31.8 193 4-255 15-213 (299)
187 3no2_A Uncharacterized protein 99.1 7.6E-08 2.6E-12 89.3 25.0 193 13-262 3-202 (276)
188 3dsm_A Uncharacterized protein 99.0 1.8E-07 6E-12 88.9 26.3 189 5-255 45-254 (328)
189 3hrp_A Uncharacterized protein 99.0 8.8E-08 3E-12 94.1 24.6 213 5-263 132-361 (409)
190 2oiz_A Aromatic amine dehydrog 99.0 1.4E-08 4.6E-13 98.1 18.1 200 6-255 110-335 (361)
191 2xdw_A Prolyl endopeptidase; a 99.0 4.4E-08 1.5E-12 102.9 23.0 129 70-254 126-268 (710)
192 2bkl_A Prolyl endopeptidase; m 99.0 3.7E-08 1.3E-12 103.3 21.8 60 70-132 122-190 (695)
193 1xip_A Nucleoporin NUP159; bet 99.0 1.1E-08 3.8E-13 99.5 15.9 103 6-141 90-192 (388)
194 1xip_A Nucleoporin NUP159; bet 99.0 1.4E-08 4.7E-13 98.9 16.0 113 6-141 40-156 (388)
195 1qks_A Cytochrome CD1 nitrite 98.9 9.9E-07 3.4E-11 90.3 29.1 205 12-262 164-380 (567)
196 3iuj_A Prolyl endopeptidase; h 98.9 7.2E-08 2.5E-12 101.1 20.4 193 4-254 129-359 (693)
197 3e5z_A Putative gluconolactona 98.9 1.5E-07 5.1E-12 87.4 19.9 196 4-254 69-286 (296)
198 1rwi_B Serine/threonine-protei 98.8 2.8E-07 9.7E-12 83.8 19.6 193 5-255 68-265 (270)
199 2qc5_A Streptogramin B lactona 98.8 2E-05 6.9E-10 72.1 31.4 191 5-253 21-217 (300)
200 1qks_A Cytochrome CD1 nitrite 98.8 5.2E-06 1.8E-10 84.9 29.6 200 5-255 198-422 (567)
201 1yr2_A Prolyl oligopeptidase; 98.8 2.8E-07 9.5E-12 97.3 20.7 127 70-255 164-304 (741)
202 2mad_H Methylamine dehydrogena 98.8 3.6E-06 1.2E-10 81.5 26.9 115 8-142 70-197 (373)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 98.7 2E-06 6.8E-11 79.8 20.3 201 4-256 71-301 (314)
204 2qe8_A Uncharacterized protein 98.7 6.4E-07 2.2E-11 85.4 17.1 118 5-142 18-156 (343)
205 3dr2_A Exported gluconolactona 98.6 4.9E-06 1.7E-10 77.7 21.8 91 6-126 47-147 (305)
206 3dsm_A Uncharacterized protein 98.6 2.8E-06 9.5E-11 80.5 20.0 202 5-262 85-308 (328)
207 3no2_A Uncharacterized protein 98.6 2.6E-06 8.9E-11 78.9 18.8 54 84-141 7-65 (276)
208 3g4e_A Regucalcin; six bladed 98.6 1.1E-05 3.9E-10 74.9 23.3 199 7-262 16-236 (297)
209 3g4e_A Regucalcin; six bladed 98.5 4.3E-06 1.5E-10 77.8 18.5 185 4-240 54-257 (297)
210 3sjl_D Methylamine dehydrogena 98.5 1E-05 3.6E-10 78.4 21.5 114 8-140 82-208 (386)
211 2z2n_A Virginiamycin B lyase; 98.5 3.6E-05 1.2E-09 70.4 23.8 191 5-253 58-254 (299)
212 3hrp_A Uncharacterized protein 98.5 5E-06 1.7E-10 81.5 18.5 215 9-252 176-408 (409)
213 2ghs_A AGR_C_1268P; regucalcin 98.5 4.8E-05 1.6E-09 71.8 24.2 191 6-253 51-259 (326)
214 2qe8_A Uncharacterized protein 98.5 1.3E-05 4.6E-10 76.2 20.0 201 71-363 19-276 (343)
215 3iuj_A Prolyl endopeptidase; h 98.3 4.2E-05 1.4E-09 80.0 20.8 58 70-131 130-195 (693)
216 2ghs_A AGR_C_1268P; regucalcin 98.3 5E-05 1.7E-09 71.7 19.1 112 5-139 91-209 (326)
217 3c75_H MADH, methylamine dehyd 98.2 6.9E-05 2.4E-09 73.7 19.6 114 8-141 122-249 (426)
218 2qc5_A Streptogramin B lactona 98.2 0.00042 1.4E-08 63.1 23.0 192 4-253 62-259 (300)
219 3dr2_A Exported gluconolactona 98.1 0.00037 1.3E-08 64.7 20.8 115 5-141 87-225 (305)
220 1mda_H Methylamine dehydrogena 98.0 0.00016 5.5E-09 69.7 17.3 112 8-140 69-194 (368)
221 2mad_H Methylamine dehydrogena 98.0 0.00039 1.3E-08 67.1 19.7 201 7-261 128-356 (373)
222 2hz6_A Endoplasmic reticulum t 98.0 1.6E-06 5.5E-11 83.8 2.5 182 14-262 8-199 (369)
223 2hz6_A Endoplasmic reticulum t 97.8 3.4E-05 1.2E-09 74.3 8.3 134 83-256 10-151 (369)
224 1fwx_A Nitrous oxide reductase 97.8 0.0002 6.9E-09 72.6 13.4 29 226-254 278-308 (595)
225 3sjl_D Methylamine dehydrogena 97.7 0.001 3.6E-08 64.3 16.9 190 9-255 38-257 (386)
226 2ece_A 462AA long hypothetical 97.7 0.0021 7.3E-08 63.0 17.8 114 5-141 139-290 (462)
227 3c75_H MADH, methylamine dehyd 97.5 0.0026 8.9E-08 62.4 16.2 195 7-262 180-409 (426)
228 2fp8_A Strictosidine synthase; 97.4 0.041 1.4E-06 51.1 22.5 120 6-141 21-175 (322)
229 1fwx_A Nitrous oxide reductase 97.3 0.0033 1.1E-07 63.8 14.1 147 93-255 255-432 (595)
230 2iwa_A Glutamine cyclotransfer 97.0 0.052 1.8E-06 49.5 18.4 201 6-254 23-237 (266)
231 3hxj_A Pyrrolo-quinoline quino 97.0 0.047 1.6E-06 50.1 18.7 212 84-365 109-324 (330)
232 3nol_A Glutamine cyclotransfer 96.9 0.041 1.4E-06 50.0 16.3 194 6-242 45-243 (262)
233 2xe4_A Oligopeptidase B; hydro 96.7 0.011 3.8E-07 62.2 12.3 110 5-141 175-305 (751)
234 3mbr_X Glutamine cyclotransfer 96.2 0.45 1.6E-05 42.6 18.2 109 6-143 23-136 (243)
235 2p4o_A Hypothetical protein; p 96.2 0.52 1.8E-05 43.2 19.5 196 5-253 33-241 (306)
236 3nok_A Glutaminyl cyclase; bet 96.1 0.13 4.4E-06 46.8 14.1 108 6-143 57-167 (268)
237 1npe_A Nidogen, entactin; glyc 96.1 0.74 2.5E-05 41.0 21.0 151 71-254 38-198 (267)
238 1yiq_A Quinohemoprotein alcoho 96.0 0.12 4.1E-06 53.7 15.5 81 8-104 239-341 (689)
239 3kya_A Putative phosphatase; s 96.0 1.4 4.8E-05 43.7 24.5 112 6-139 141-277 (496)
240 2xe4_A Oligopeptidase B; hydro 96.0 0.048 1.7E-06 57.3 12.4 57 71-130 176-241 (751)
241 1kb0_A Quinohemoprotein alcoho 95.9 0.16 5.3E-06 52.8 15.6 59 187-263 456-515 (677)
242 4hw6_A Hypothetical protein, I 95.7 1.6 5.6E-05 42.3 23.6 28 337-364 403-432 (433)
243 2fp8_A Strictosidine synthase; 95.7 0.7 2.4E-05 42.5 17.8 115 5-141 81-217 (322)
244 1npe_A Nidogen, entactin; glyc 95.6 1.1 3.8E-05 39.8 23.3 199 5-262 37-245 (267)
245 3a9g_A Putative uncharacterize 95.5 1.6 5.6E-05 41.0 20.9 27 5-32 30-56 (354)
246 4a2l_A BT_4663, two-component 95.5 2.9 9.9E-05 43.7 30.5 204 5-255 358-572 (795)
247 3mbr_X Glutamine cyclotransfer 95.5 1.3 4.5E-05 39.5 19.5 172 44-262 7-186 (243)
248 4a2l_A BT_4663, two-component 95.4 3.2 0.00011 43.4 29.8 197 6-255 133-340 (795)
249 3q7m_A Lipoprotein YFGL, BAMB; 95.4 1.8 6.2E-05 40.4 21.6 187 14-256 102-298 (376)
250 2ece_A 462AA long hypothetical 95.3 0.11 3.9E-06 50.9 11.1 112 8-141 192-353 (462)
251 3tc9_A Hypothetical hydrolase; 95.3 0.49 1.7E-05 46.0 15.9 111 5-141 138-258 (430)
252 3nol_A Glutamine cyclotransfer 95.2 0.6 2E-05 42.3 14.9 155 71-262 45-208 (262)
253 1kb0_A Quinohemoprotein alcoho 95.2 0.056 1.9E-06 56.2 9.3 51 92-143 457-510 (677)
254 2ism_A Putative oxidoreductase 95.2 2.1 7.3E-05 40.1 22.9 26 5-31 32-57 (352)
255 2iwa_A Glutamine cyclotransfer 94.9 0.24 8.2E-06 45.1 11.5 110 10-141 111-238 (266)
256 3v9f_A Two-component system se 94.7 4.7 0.00016 42.0 27.5 110 4-141 407-525 (781)
257 1mda_H Methylamine dehydrogena 94.7 0.25 8.7E-06 47.2 11.6 69 74-144 269-350 (368)
258 2p4o_A Hypothetical protein; p 94.5 2.7 9.4E-05 38.2 21.9 109 5-140 73-198 (306)
259 3hxj_A Pyrrolo-quinoline quino 94.4 0.62 2.1E-05 42.4 13.5 132 84-254 189-324 (330)
260 3qqz_A Putative uncharacterize 94.3 2.8 9.6E-05 37.6 21.8 118 7-141 73-205 (255)
261 2p9w_A MAL S 1 allergenic prot 94.3 3.3 0.00011 38.8 17.9 107 7-133 16-161 (334)
262 3pbp_A Nucleoporin NUP82; beta 94.2 0.38 1.3E-05 46.7 11.6 108 5-120 67-191 (452)
263 3nok_A Glutaminyl cyclase; bet 94.2 2.5 8.4E-05 38.3 16.4 156 71-262 57-217 (268)
264 1yiq_A Quinohemoprotein alcoho 94.0 0.1 3.5E-06 54.3 7.9 52 91-143 454-508 (689)
265 2xbg_A YCF48-like protein; pho 94.0 1.8 6.1E-05 40.1 15.8 101 5-133 164-272 (327)
266 4hw6_A Hypothetical protein, I 93.4 6.1 0.00021 38.2 20.6 67 71-139 230-303 (433)
267 3q7m_A Lipoprotein YFGL, BAMB; 92.9 2.1 7.3E-05 39.9 14.6 58 83-143 240-299 (376)
268 2xbg_A YCF48-like protein; pho 92.6 6.2 0.00021 36.3 28.6 27 225-251 205-231 (327)
269 3tc9_A Hypothetical hydrolase; 92.0 1.2 4.3E-05 43.1 11.8 68 71-140 228-301 (430)
270 1kv9_A Type II quinohemoprotei 91.5 3.2 0.00011 42.7 14.9 60 186-263 436-496 (668)
271 3sre_A PON1, serum paraoxonase 91.1 10 0.00035 35.7 17.8 30 226-255 222-253 (355)
272 1k3i_A Galactose oxidase precu 90.9 5.5 0.00019 40.7 15.9 27 8-34 247-274 (656)
273 3v65_B Low-density lipoprotein 90.0 13 0.00044 35.1 23.5 202 5-262 117-325 (386)
274 3v64_C Agrin; beta propeller, 88.8 15 0.00051 34.1 22.0 153 71-255 75-235 (349)
275 3sre_A PON1, serum paraoxonase 88.5 9.6 0.00033 35.9 14.3 114 6-140 114-252 (355)
276 3pbp_A Nucleoporin NUP82; beta 86.5 8.7 0.0003 37.2 12.7 68 71-141 68-159 (452)
277 1k3i_A Galactose oxidase precu 86.0 3.8 0.00013 41.9 10.8 110 8-141 190-324 (656)
278 3v65_B Low-density lipoprotein 85.7 24 0.00081 33.2 22.7 57 85-141 89-148 (386)
279 3a9g_A Putative uncharacterize 84.8 9 0.00031 35.8 12.0 54 71-128 31-95 (354)
280 3v64_C Agrin; beta propeller, 84.4 26 0.00087 32.5 24.8 201 6-262 75-282 (349)
281 1ijq_A LDL receptor, low-densi 83.4 26 0.00089 31.8 14.6 112 5-141 78-196 (316)
282 3v9f_A Two-component system se 83.2 45 0.0016 34.4 29.7 204 5-255 314-525 (781)
283 1flg_A Protein (quinoprotein e 83.2 6.3 0.00022 39.8 10.7 52 91-143 465-519 (582)
284 1flg_A Protein (quinoprotein e 82.9 19 0.00065 36.2 14.2 19 85-103 339-357 (582)
285 1kv9_A Type II quinohemoprotei 81.7 5.5 0.00019 40.9 9.8 53 90-143 436-491 (668)
286 3amr_A 3-phytase; beta-propell 81.6 35 0.0012 32.0 21.0 101 14-140 39-162 (355)
287 1cru_A Protein (soluble quinop 81.3 13 0.00045 36.1 11.9 55 71-128 29-99 (454)
288 1tl2_A L10, protein (tachylect 80.7 11 0.00037 33.2 9.8 104 5-133 42-156 (236)
289 1n7d_A LDL receptor, low-densi 80.1 7.5 0.00026 40.2 10.2 116 6-141 408-529 (699)
290 3kya_A Putative phosphatase; s 79.2 29 0.00099 34.2 13.6 68 71-140 249-341 (496)
291 2ad6_A Methanol dehydrogenase 79.0 5.8 0.0002 39.9 8.7 53 90-143 442-497 (571)
292 2g8s_A Glucose/sorbosone dehyd 78.3 43 0.0015 31.0 25.3 28 5-33 19-47 (353)
293 2p9w_A MAL S 1 allergenic prot 78.3 15 0.0005 34.3 10.5 124 5-141 64-216 (334)
294 3das_A Putative oxidoreductase 77.7 31 0.0011 32.2 12.8 30 5-34 33-62 (347)
295 3qqz_A Putative uncharacterize 77.2 39 0.0013 30.0 14.3 106 5-139 28-150 (255)
296 2ad6_A Methanol dehydrogenase 75.1 9.6 0.00033 38.3 9.0 18 86-103 320-337 (571)
297 3m0c_C LDL receptor, low-densi 74.7 87 0.003 32.7 24.4 117 5-141 425-547 (791)
298 3das_A Putative oxidoreductase 74.5 32 0.0011 32.1 11.9 54 71-127 34-101 (347)
299 1ijq_A LDL receptor, low-densi 73.8 52 0.0018 29.7 22.9 207 6-262 32-245 (316)
300 3sov_A LRP-6, low-density lipo 72.7 56 0.0019 29.7 23.7 202 6-262 37-245 (318)
301 2g8s_A Glucose/sorbosone dehyd 72.6 24 0.00081 32.8 10.6 55 71-128 20-88 (353)
302 2wg3_C Hedgehog-interacting pr 71.3 57 0.0019 31.7 13.3 29 71-100 16-44 (463)
303 1cru_A Protein (soluble quinop 71.2 47 0.0016 32.1 12.7 30 5-34 28-57 (454)
304 1w6s_A Methanol dehydrogenase 70.7 17 0.00056 36.9 9.5 53 90-143 451-506 (599)
305 3m0c_C LDL receptor, low-densi 69.6 78 0.0027 33.1 14.6 111 6-141 473-590 (791)
306 1w6s_A Methanol dehydrogenase 69.0 92 0.0032 31.3 14.7 17 184-200 490-506 (599)
307 1n7d_A LDL receptor, low-densi 65.5 14 0.00047 38.2 7.8 112 5-141 454-572 (699)
308 3p5b_L Low density lipoprotein 63.8 98 0.0033 29.1 23.2 117 5-141 113-235 (400)
309 3sov_A LRP-6, low-density lipo 62.0 93 0.0032 28.2 18.5 111 6-141 81-198 (318)
310 4gq2_M Nucleoporin NUP120; bet 54.8 17 0.00059 38.9 6.5 41 335-376 235-276 (950)
311 3sbq_A Nitrous-oxide reductase 54.2 13 0.00045 37.4 4.9 28 227-254 325-354 (638)
312 2ism_A Putative oxidoreductase 51.3 42 0.0015 31.0 8.0 66 71-141 33-115 (352)
313 4fhn_B Nucleoporin NUP120; pro 49.2 15 0.00051 40.3 5.0 41 336-377 238-279 (1139)
314 3s94_A LRP-6, low-density lipo 47.5 2.3E+02 0.0079 28.4 19.6 113 5-141 41-160 (619)
315 3amr_A 3-phytase; beta-propell 45.9 1.9E+02 0.0065 26.9 13.8 117 4-139 128-262 (355)
316 1tl2_A L10, protein (tachylect 41.2 37 0.0013 29.8 5.2 54 309-363 42-114 (236)
317 3s94_A LRP-6, low-density lipo 36.1 3.4E+02 0.012 27.1 17.1 113 4-141 84-203 (619)
318 3s25_A Hypothetical 7-bladed b 34.5 1E+02 0.0034 27.9 7.4 62 75-141 110-177 (302)
319 4a0p_A LRP6, LRP-6, low-densit 33.5 3.8E+02 0.013 26.8 22.8 113 5-141 38-156 (628)
320 3f7f_A Nucleoporin NUP120; nuc 32.8 60 0.002 33.5 6.0 36 337-375 223-259 (729)
321 3p5b_L Low density lipoprotein 31.6 3.2E+02 0.011 25.4 25.4 56 85-140 85-143 (400)
322 4gq2_M Nucleoporin NUP120; bet 31.0 43 0.0015 35.9 4.9 31 5-35 237-267 (950)
323 2xzh_A Clathrin heavy chain 1; 30.7 3.3E+02 0.011 25.3 13.8 142 90-266 47-199 (365)
324 3s25_A Hypothetical 7-bladed b 30.6 1.4E+02 0.0048 26.9 7.7 25 9-33 109-137 (302)
325 3f7f_A Nucleoporin NUP120; nuc 25.0 77 0.0026 32.7 5.2 29 5-35 223-251 (729)
326 3ei3_A DNA damage-binding prot 24.7 4.1E+02 0.014 29.0 11.3 57 84-141 525-592 (1158)
327 4fhn_B Nucleoporin NUP120; pro 21.8 48 0.0016 36.3 3.2 29 7-35 241-269 (1139)
328 3sbq_A Nitrous-oxide reductase 21.0 1.6E+02 0.0053 29.7 6.3 81 7-101 326-408 (638)
No 1
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=2.3e-39 Score=336.51 Aligned_cols=334 Identities=14% Similarity=0.192 Sum_probs=222.5
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcch---------hhc------------
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEF---------DYL------------ 62 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~---------~~~------------ 62 (400)
..|++++|||||++||||+.||+|+|||+.+++. ....++.+|.... ..+
T Consensus 60 ~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~---------~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~ 130 (611)
T 1nr0_A 60 HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 130 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEE
T ss_pred CceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc---------eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeE
Confidence 4689999999999999999999999999864321 1112233332110 000
Q ss_pred -----------ccccccceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEE
Q psy12356 63 -----------KSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYS 127 (400)
Q Consensus 63 -----------~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~ 127 (400)
.-.+|...|++++|+|+++ ..+++++.|++|+|||..+++ +..|...|++++|+|++ ++||++
T Consensus 131 v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~-~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg-~~las~ 208 (611)
T 1nr0_A 131 VFLFDTGTSNGNLTGQARAMNSVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDG-SLFAST 208 (611)
T ss_dssp EEETTTCCBCBCCCCCSSCEEEEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTS-SEEEEE
T ss_pred EEEeeCCCCcceecCCCCCceEEEECCCCC-eEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCC-CEEEEE
Confidence 0123456799999999863 247788999999999988765 35678899999999985 799999
Q ss_pred eCCCeEEEEecccccccccccc-eec--cCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCc-
Q psy12356 128 SSKGTIRLCDMRAAALCDRHSK-CLI--EGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDR- 203 (400)
Q Consensus 128 s~Dg~i~lWD~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~- 203 (400)
+.|++|++||++++........ .+. .+ ...+..+ .++|++...++++.|++|++||++++.....
T Consensus 209 s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h-~~~V~~v----------~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTKTGVFEDDSLKNVAH-SGSVFGL----------TWSPDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp ETTSCEEEEETTTCCEEEECBCTTSSSCSS-SSCEEEE----------EECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred ECCCcEEEEECCCCcEeeeecccccccccc-CCCEEEE----------EECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 9999999999988743221100 000 00 0112222 3346776777778899999999987643210
Q ss_pred ---------------------------ccccccCCCCCCCcccccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCC
Q psy12356 204 ---------------------------HSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHME 255 (400)
Q Consensus 204 ---------------------------~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~ 255 (400)
.++.+.. ........+.+|...|.+++|||||++|+++ .|++|++||+.++
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~-~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~ 356 (611)
T 1nr0_A 278 PVGTRIEDQQLGIIWTKQALVSISANGFINFVNP-ELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356 (611)
T ss_dssp ECCSSGGGCEEEEEECSSCEEEEETTCCEEEEET-TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeC-CCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Confidence 0011100 0000111245899999999999999999975 6999999999875
Q ss_pred CCceeee-cCCC--------------------------------------------------------------------
Q psy12356 256 SRPVETY-PTHT-------------------------------------------------------------------- 266 (400)
Q Consensus 256 ~~~l~~~-~~h~-------------------------------------------------------------------- 266 (400)
. +...+ .+|.
T Consensus 357 ~-~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~ 435 (611)
T 1nr0_A 357 I-SNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435 (611)
T ss_dssp C-EEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred c-eeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence 3 22222 1221
Q ss_pred --------------------cCCCCccc-CCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeec
Q psy12356 267 --------------------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEAS 325 (400)
Q Consensus 267 --------------------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~ 325 (400)
+.|+|+++ +++.++++++|++..... ......+|...|++++|||||++|++.
T Consensus 436 ~~~~~~~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~------~~~~~~~h~~~v~~v~fspdg~~las~ 509 (611)
T 1nr0_A 436 IYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASV------SEVKTIVHPAEITSVAFSNNGAFLVAT 509 (611)
T ss_dssp EEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEE------EEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred EEeCCceeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCce------eeeeccCCCCceEEEEECCCCCEEEEE
Confidence 23455543 345566666666532211 001113688899999999999999864
Q ss_pred ccc----h-------------hhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 326 PRG----I-------------FADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 326 ~~~----~-------------~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
... + ...+|...|++|+|||||++|||+ .|++|+||+++.++
T Consensus 510 s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~ 569 (611)
T 1nr0_A 510 DQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS 569 (611)
T ss_dssp ETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred cCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence 321 0 012499999999999999999997 79999999998654
No 2
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=2.7e-38 Score=309.44 Aligned_cols=280 Identities=13% Similarity=0.179 Sum_probs=200.1
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
+.|++++|+|||++||||+.||+|+|||..++ +....+.+|.. .|.+++|+|+++
T Consensus 67 ~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~-----------~~~~~~~~h~~------------~v~~~~~s~~g~-- 121 (380)
T 3iz6_a 67 GKVYSLDWTPEKNWIVSASQDGRLIVWNALTS-----------QKTHAIKLHCP------------WVMECAFAPNGQ-- 121 (380)
T ss_dssp SCEEEEEECTTSSCEEEEETTSEEEEEETTTT-----------EEEEEEECCCT------------TCCCCEECTTSS--
T ss_pred cEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-----------ccceEEecCCC------------CEEEEEECCCCC--
Confidence 46999999999999999999999999998753 23567888874 488999999874
Q ss_pred eEEEeeCCCeEEEEEccCCC-----------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceec
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-----------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLI 152 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-----------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~ 152 (400)
.+++++.|++|+|||+.+.. +..|...|.++.|+|++...|++++.|++|++||++++.....+.....
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~ 201 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFP 201 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSS
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccC
Confidence 67778999999999996532 2456778999999998777899999999999999998843221100000
Q ss_pred cCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEE
Q psy12356 153 EGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKI 232 (400)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~f 232 (400)
..-...+..+.+. ..+....++++.|++|++||++..... .+. +.+|.+.|.+|+|
T Consensus 202 ~~h~~~v~~~~~~---------~~~~~~l~sgs~D~~v~~wd~~~~~~~---~~~------------~~~h~~~v~~v~~ 257 (380)
T 3iz6_a 202 SGHTADVLSLSIN---------SLNANMFISGSCDTTVRLWDLRITSRA---VRT------------YHGHEGDINSVKF 257 (380)
T ss_dssp SSCCSCEEEEEEC---------SSSCCEEEEEETTSCEEEEETTTTCCC---CEE------------ECCCSSCCCEEEE
T ss_pred CCCccCeEEEEee---------cCCCCEEEEEECCCeEEEEECCCCCcc---eEE------------ECCcCCCeEEEEE
Confidence 0000011111111 124445666778999999999853221 111 3478899999999
Q ss_pred CCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceE
Q psy12356 233 SNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHIN 311 (400)
Q Consensus 233 Spdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 311 (400)
+|+|++|+++ .|++|||||++++ .+++.+..|.... ..+...|.
T Consensus 258 ~p~~~~l~s~s~D~~i~lwd~~~~-~~~~~~~~~~~~~----------------------------------~~~~~~v~ 302 (380)
T 3iz6_a 258 FPDGQRFGTGSDDGTCRLFDMRTG-HQLQVYNREPDRN----------------------------------DNELPIVT 302 (380)
T ss_dssp CTTSSEEEEECSSSCEEEEETTTT-EEEEEECCCCSSS----------------------------------CCSSCSCS
T ss_pred ecCCCeEEEEcCCCeEEEEECCCC-cEEEEeccccccc----------------------------------ccccCceE
Confidence 9999999975 6899999999986 3566665442100 01112245
Q ss_pred EEEEcCCCcEEeecccc----h--------------hhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 312 SISVNSDQLTVEASPRG----I--------------FADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 312 ~i~~s~dg~~~~~~~~~----~--------------~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
+++|+|+|+++++.... + ...+|.+.|++++|||||++|||+ .|++|+||++...+
T Consensus 303 ~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 303 SVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred EEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 66666766666543210 0 114899999999999999999997 69999999987543
No 3
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-37 Score=296.89 Aligned_cols=270 Identities=12% Similarity=0.170 Sum_probs=191.7
Q ss_pred eeEEEEEECCCC-CeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFSDG-ELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fspdG-~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
+.|++|+|+|++ ++||||+.|++|++|++.+... ....+++.|.+|.. .|.+++|+|++.
T Consensus 18 ~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~------~~~~~~~~~~~h~~------------~v~~~~~s~dg~- 78 (319)
T 3frx_A 18 GWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQ------KFGVPVRSFKGHSH------------IVQDCTLTADGA- 78 (319)
T ss_dssp SCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETT------EEEEEEEEEECCSS------------CEEEEEECTTSS-
T ss_pred ceEEEEEccCCCccEEEEecCCccEEEecCCCCCc------cccccceEEeCCcc------------cEEEEEECCCCC-
Confidence 569999999965 8999999999999999864210 01234667889974 599999999874
Q ss_pred ceEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccc--ccccceeccCcc
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALC--DRHSKCLIEGTN 156 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~--~~~~~~~~~~~~ 156 (400)
.+++++.|++|+|||+++++ +..|...|.+++|+|++ .+|++++.|++|++||++...+. ..|..
T Consensus 79 -~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~------- 149 (319)
T 3frx_A 79 -YALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKA-SMIISGSRDKTIKVWTIKGQCLATLLGHND------- 149 (319)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-CEEEEEETTSCEEEEETTSCEEEEECCCSS-------
T ss_pred -EEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCC-CEEEEEeCCCeEEEEECCCCeEEEEeccCC-------
Confidence 67788999999999999886 35678889999999975 79999999999999999765221 11111
Q ss_pred cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC
Q psy12356 157 CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG 236 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg 236 (400)
.+..+.+.+.. ....+....++++.|++|++||+++.... ..+.+|...|.+++|+|+|
T Consensus 150 -~v~~~~~~~~~----~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----------------~~~~~h~~~v~~~~~sp~g 208 (319)
T 3frx_A 150 -WVSQVRVVPNE----KADDDSVTIISAGNDKMVKAWNLNQFQIE----------------ADFIGHNSNINTLTASPDG 208 (319)
T ss_dssp -CEEEEEECCC----------CCEEEEEETTSCEEEEETTTTEEE----------------EEECCCCSCEEEEEECTTS
T ss_pred -cEEEEEEccCC----CCCCCccEEEEEeCCCEEEEEECCcchhh----------------eeecCCCCcEEEEEEcCCC
Confidence 11112221100 00113334566778999999999875431 1134788999999999999
Q ss_pred cEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEEE
Q psy12356 237 RYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISV 315 (400)
Q Consensus 237 ~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 315 (400)
++|+++ .|++|+|||++++ .++..+..|. .|.+++|
T Consensus 209 ~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~------------------------------------------~v~~~~~ 245 (319)
T 3frx_A 209 TLIASAGKDGEIMLWNLAAK-KAMYTLSAQD------------------------------------------EVFSLAF 245 (319)
T ss_dssp SEEEEEETTCEEEEEETTTT-EEEEEEECCS------------------------------------------CEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCC-cEEEEecCCC------------------------------------------cEEEEEE
Confidence 999975 6999999999975 3555554432 1334444
Q ss_pred cCCCcEEeeccc---------------------chhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCcc
Q psy12356 316 NSDQLTVEASPR---------------------GIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEI 365 (400)
Q Consensus 316 s~dg~~~~~~~~---------------------~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~ 365 (400)
+|||.+++++.. ..+..+|...|.+++|||||++||++ .|++|+|||+.+
T Consensus 246 sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 246 SPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred cCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 444444332111 00113567789999999999999997 799999999875
No 4
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=2.6e-37 Score=305.75 Aligned_cols=267 Identities=12% Similarity=0.160 Sum_probs=200.4
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|+|++||+|+.||+|+|||+.+++ ..+++.+|+. .|.+++|+|+++
T Consensus 109 ~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~-----------~~~~l~~h~~------------~V~~v~~~~~~~-- 163 (410)
T 1vyh_C 109 SPVTRVIFHPVFSVMVSASEDATIKVWDYETGD-----------FERTLKGHTD------------SVQDISFDHSGK-- 163 (410)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTCC-----------CCEEECCCSS------------CEEEEEECTTSS--
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEEeccCC------------cEEEEEEcCCCC--
Confidence 468999999999999999999999999998642 3567888974 499999999864
Q ss_pred eEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+++++.|++|+|||+.+++ +..|...|++++|+|++ +.|++++.|++|++||++++.....+..+ . ..+
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~-~~l~s~s~D~~i~~wd~~~~~~~~~~~~h----~-~~v 237 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGH----R-EWV 237 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECC----S-SCE
T ss_pred EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEECCCCcEEEEEeCC----C-ccE
Confidence 77788999999999998876 34677889999999985 78999999999999999988432211100 0 011
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC----
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS---- 235 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd---- 235 (400)
.. +...+++...++++.|++|++||++++... .. +.+|...|.+++|+|+
T Consensus 238 ~~----------~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~----~~------------~~~h~~~v~~~~~~~~~~~~ 291 (410)
T 1vyh_C 238 RM----------VRPNQDGTLIASCSNDQTVRVWVVATKECK----AE------------LREHRHVVECISWAPESSYS 291 (410)
T ss_dssp EE----------EEECTTSSEEEEEETTSCEEEEETTTCCEE----EE------------ECCCSSCEEEEEECCSCGGG
T ss_pred EE----------EEECCCCCEEEEEcCCCeEEEEECCCCcee----eE------------ecCCCceEEEEEEcCccccc
Confidence 11 122356666677778999999999875432 11 3467789999999997
Q ss_pred ----------------CcEEEE-ecCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCccccc
Q psy12356 236 ----------------GRYMIS-RDYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPI 290 (400)
Q Consensus 236 ----------------g~~las-~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~ 290 (400)
|.+|++ +.|++|+|||++++ .++..+.+|. +.++|+++ +++.+++|++|++...
T Consensus 292 ~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~ 370 (410)
T 1vyh_C 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG-MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK 370 (410)
T ss_dssp GGGGCCSCC-------CCEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS
T ss_pred chhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC-ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 667886 47999999999986 4677787774 34555543 4556666666654211
Q ss_pred ceeeccCccceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeC
Q psy12356 291 ELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHL 363 (400)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~ 363 (400)
+. + .. ..+|...|.+++|+|++++|||+ .|++|+||++
T Consensus 371 ~~-----------------~-----------------~~-~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 371 RC-----------------M-----------------KT-LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CC-----------------C-----------------EE-EECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ce-----------------E-----------------EE-EcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 10 0 00 13799999999999999999997 7999999985
No 5
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.2e-37 Score=298.20 Aligned_cols=276 Identities=12% Similarity=0.140 Sum_probs=185.3
Q ss_pred eeEEEEEECCCCCeEEEecC------CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 4 YMREASQRFSDGELLATGDK------GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
..|++|+|||||++|||||. |++|++|+..++... ........+|. ..|.+|+|+
T Consensus 43 ~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~-------~~~~~~~~~~~------------~~V~~~~~s 103 (357)
T 4g56_B 43 VQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPN-------ESLCTAGVQTE------------AGVTDVAWV 103 (357)
T ss_dssp SEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---C-------GGGCSEEEECS------------SCEEEEEEE
T ss_pred CCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcc-------eeEecccCCCC------------CCEEEEEEc
Confidence 46999999999999999997 788999998764311 11122334554 459999999
Q ss_pred eccCCceEEEeeCCCeEEEEEccCCCc--------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccc
Q psy12356 78 RRKNQAHFLLSTNDQSFNIVDIKPTNM--------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSK 149 (400)
Q Consensus 78 p~~~~~~~l~ss~D~tI~lWd~~~~~~--------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~ 149 (400)
|++ .+++++.|++|+|||+.+++. ..|...|++++|+|++ ++|++++.|++|++||++++.....+..
T Consensus 104 ~d~---~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~sgs~dg~v~iwd~~~~~~~~~~~~ 179 (357)
T 4g56_B 104 SEK---GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDG-TQAVSGGKDFSVKVWDLSQKAVLKSYNA 179 (357)
T ss_dssp TTT---EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred CCC---CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence 975 788889999999999987752 2466789999999985 7899999999999999998854322111
Q ss_pred eeccCcccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeE
Q psy12356 150 CLIEGTNCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSIS 228 (400)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 228 (400)
+ ...+..+.+ .+++ ...++++.||+|++||+++++... .+. +..|...+.
T Consensus 180 h-----~~~v~~v~~----------s~~~~~~~~s~~~dg~v~~wd~~~~~~~~----~~~----------~~~~~~~v~ 230 (357)
T 4g56_B 180 H-----SSEVNCVAA----------CPGKDTIFLSCGEDGRILLWDTRKPKPAT----RID----------FCASDTIPT 230 (357)
T ss_dssp C-----SSCEEEEEE----------CTTCSSCEEEEETTSCEEECCTTSSSCBC----BCC----------CTTCCSCEE
T ss_pred C-----CCCEEEEEE----------ccCCCceeeeeccCCceEEEECCCCceee----eee----------ecccccccc
Confidence 0 011222222 2332 234555689999999998765321 111 124556799
Q ss_pred EEEECCCC-cEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCc-cc-CCCCCceeecCcccccceeeccC
Q psy12356 229 DVKISNSG-RYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQ-LR-DPSNITALRVPQIKPIELTVEAS 297 (400)
Q Consensus 229 ~v~fSpdg-~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~-~~-~~~~~~~i~l~~~~~~~~~~~~~ 297 (400)
+|+|+|++ ++||++ .|++|+|||++++ .+++++.+|. +.|++. ++ +++.+++|++|++...+
T Consensus 231 ~v~~sp~~~~~la~g~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~------ 303 (357)
T 4g56_B 231 SVTWHPEKDDTFACGDETGNVSLVNIKNP-DSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSE------ 303 (357)
T ss_dssp EEEECTTSTTEEEEEESSSCEEEEESSCG-GGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCE------
T ss_pred chhhhhcccceEEEeecccceeEEECCCC-cEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCc------
Confidence 99999985 577764 6899999999986 4677777774 334442 33 34555666665542110
Q ss_pred ccceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEcc-CCCEEEEe-cCCeEEEEeCccCCe
Q psy12356 298 PRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNS-DQETYLSA-DDLRINLWHLEITDQ 368 (400)
Q Consensus 298 ~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fsp-Dg~~las~-~D~~i~lW~~~~~~~ 368 (400)
.+ ...+|...|++|+||| |+++|||+ .|++|++|++....+
T Consensus 304 -----------------------~~-------~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 304 -----------------------VF-------RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp -----------------------EE-------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred -----------------------Ee-------EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 00 0137999999999999 89999997 799999999976443
No 6
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=7.2e-37 Score=295.37 Aligned_cols=286 Identities=14% Similarity=0.180 Sum_probs=198.4
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeee-eeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYS-TFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.|++++|||||++||+|+.|++|+|||+.++. ..... ...+|. ..|.+|+|+|+++
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~---------~~~~~~~~~~h~------------~~v~~~~~sp~g~-- 74 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDS---------WICKSVLSEGHQ------------RTVRKVAWSPCGN-- 74 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTE---------EEEEEEECSSCS------------SCEEEEEECTTSS--
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCc---------ceeeeeeccccC------------CcEEEEEECCCCC--
Confidence 68999999999999999999999999987531 11111 225676 4599999999874
Q ss_pred eEEEeeCCCeEEEEEccCCC------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc-
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN- 156 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~- 156 (400)
.+++++.|++|+|||+..+. +..|...|++++|+|++ ++|++++.|++|++||++++... .++..+..
T Consensus 75 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~s~D~~v~iwd~~~~~~~----~~~~~~~~h 149 (345)
T 3fm0_A 75 YLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEY----ECVSVLNSH 149 (345)
T ss_dssp EEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEEECTTSCE----EEEEEECCC
T ss_pred EEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCC-CEEEEEECCCeEEEEECCCCCCe----EEEEEecCc
Confidence 77788999999999998764 34677889999999985 79999999999999999876311 11111110
Q ss_pred -cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 157 -CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
..+..+ ...|++...++++.|++|++||++.+... .. ..+.+|...|.+|+|+|+
T Consensus 150 ~~~v~~~----------~~~p~~~~l~s~s~d~~i~~w~~~~~~~~--~~------------~~~~~h~~~v~~l~~sp~ 205 (345)
T 3fm0_A 150 TQDVKHV----------VWHPSQELLASASYDDTVKLYREEEDDWV--CC------------ATLEGHESTVWSLAFDPS 205 (345)
T ss_dssp CSCEEEE----------EECSSSSCEEEEETTSCEEEEEEETTEEE--EE------------EEECCCSSCEEEEEECTT
T ss_pred CCCeEEE----------EECCCCCEEEEEeCCCcEEEEEecCCCEE--EE------------EEecCCCCceEEEEECCC
Confidence 111122 23466666777788999999998764311 00 113478899999999999
Q ss_pred CcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEE
Q psy12356 236 GRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSIS 314 (400)
Q Consensus 236 g~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 314 (400)
|++|+++ .|++|+|||...+... ..+... +.....+ +...+...|...|++++
T Consensus 206 g~~l~s~s~D~~v~iW~~~~~~~~-~~~~~~-----------~~~~~~~--------------~~~~~~~~h~~~v~~v~ 259 (345)
T 3fm0_A 206 GQRLASCSDDRTVRIWRQYLPGNE-QGVACS-----------GSDPSWK--------------CICTLSGFHSRTIYDIA 259 (345)
T ss_dssp SSEEEEEETTSCEEEEEEECTTCT-TCCCCC--------------CEEE--------------EEEEECSSCSSCEEEEE
T ss_pred CCEEEEEeCCCeEEEeccccCCCC-ccceee-----------ccCCccc--------------eeEEecCCCCCcEEEEE
Confidence 9999974 7999999998654321 111000 0000000 00112234777889999
Q ss_pred EcCCCcEEeeccc----chh-------------------hcccccceeEEEEccCCC-EEEEe-cCCeEEEEeCccCCe
Q psy12356 315 VNSDQLTVEASPR----GIF-------------------ADAHTYHISSTSVNSDQE-TYLSA-DDLRINLWHLEITDQ 368 (400)
Q Consensus 315 ~s~dg~~~~~~~~----~~~-------------------~~gh~~~V~~i~fspDg~-~las~-~D~~i~lW~~~~~~~ 368 (400)
|+|++..+++++. +++ ..+|...|++|+|+|++. +|||+ .|++|++|++...++
T Consensus 260 ~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 260 WCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp ECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC---
T ss_pred EecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCC
Confidence 9998887765331 011 148999999999999985 89997 799999999986553
No 7
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.7e-37 Score=318.00 Aligned_cols=328 Identities=16% Similarity=0.140 Sum_probs=224.5
Q ss_pred eeEEEEEECCCCC-eEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFSDGE-LLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fspdG~-~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
..|++|+|+|++. +||+|+.|++|+|||... .++.+++.+|+. .|.+|+|+|+++
T Consensus 148 ~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~-----------~~~~~~l~~H~~------------~V~~v~fspdg~- 203 (611)
T 1nr0_A 148 RAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP-----------FKFKSTFGEHTK------------FVHSVRYNPDGS- 203 (611)
T ss_dssp SCEEEEEECSSSSCEEEEEETTSCEEEEETTT-----------BEEEEEECCCSS------------CEEEEEECTTSS-
T ss_pred CCceEEEECCCCCeEEEEEeCCCeEEEEECCC-----------CeEeeeeccccC------------ceEEEEECCCCC-
Confidence 3689999999997 699999999999999763 245678889974 499999999874
Q ss_pred ceEEEeeCCCeEEEEEccCCCc-----c------cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccce-
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTNM-----E------ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKC- 150 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~~-----~------~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~- 150 (400)
.+++++.|++|+|||+.+++. . .|...|.+++|+|++ ++|++++.|++|++||+++++........
T Consensus 204 -~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg-~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~ 281 (611)
T 1nr0_A 204 -LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDG-TKIASASADKTIKIWNVATLKVEKTIPVGT 281 (611)
T ss_dssp -EEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEECCS
T ss_pred -EEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCC-CEEEEEeCCCeEEEEeCCCCceeeeecCCC
Confidence 677889999999999987752 1 577889999999985 78999999999999999987543211000
Q ss_pred -----ec----------cCc---ccceece------eccCchh---hhhhcccCcceeecCCCCCeEEEeecccccccC-
Q psy12356 151 -----LI----------EGT---NCNCQGL------IVPESKR---EERQSSQNRREKEDNRRKPAIRLCDMRAAALCD- 202 (400)
Q Consensus 151 -----~~----------~~~---~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~- 202 (400)
.. ... ....|+. ....++. ..+.++|++...++++.|++|++||+.++....
T Consensus 282 ~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~ 361 (611)
T 1nr0_A 282 RIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRV 361 (611)
T ss_dssp SGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEC
T ss_pred CccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeee
Confidence 00 000 0000000 0000111 112345677777777889999999987653210
Q ss_pred --------------------------cccccccCCCCCCCc---------------------------------------
Q psy12356 203 --------------------------RHSKFFEEPEDPTNK--------------------------------------- 217 (400)
Q Consensus 203 --------------------------~~~~~~~~~~~~~~~--------------------------------------- 217 (400)
..++.+.........
T Consensus 362 ~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~ 441 (611)
T 1nr0_A 362 FPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK 441 (611)
T ss_dssp SSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE
T ss_pred cccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCc
Confidence 001111000000000
Q ss_pred ccccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCC-ceeeecCCC-------cCCCCccc-CCCCCceeecCcc
Q psy12356 218 SFFSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHMESR-PVETYPTHT-------KEENGQLR-DPSNITALRVPQI 287 (400)
Q Consensus 218 ~~~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~-~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~ 287 (400)
.....|...+.+++|||||++||++ .|++|+|||+.++.. +++. .+|. ++|+|+++ +++.++++++|++
T Consensus 442 ~~~~~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~ 520 (611)
T 1nr0_A 442 LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSV 520 (611)
T ss_dssp EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEG
T ss_pred eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEc
Confidence 0000234568899999999999975 689999999986421 2233 4563 67999976 5788999999987
Q ss_pred cccceeeccCccce-eccccccceEEEEEcCCCcEEeeccc----c------------hhhccc-ccceeEEEEccCCCE
Q psy12356 288 KPIELTVEASPRRI-FANAHTYHINSISVNSDQLTVEASPR----G------------IFADAH-TYHISSTSVNSDQET 349 (400)
Q Consensus 288 ~~~~~~~~~~~~~~-~~~~~~~~i~~i~~s~dg~~~~~~~~----~------------~~~~gh-~~~V~~i~fspDg~~ 349 (400)
...... ... ...+|...|++++|+|||++|++++. + ....|| ...|++++|+|||+
T Consensus 521 ~~~~~~-----~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~- 594 (611)
T 1nr0_A 521 ANNFEL-----AHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT- 594 (611)
T ss_dssp GGTTEE-----SCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-
T ss_pred CCCCce-----eeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-
Confidence 542111 111 12359999999999999999986432 1 112489 89999999999999
Q ss_pred EEEe-cCCeEEEEeCc
Q psy12356 350 YLSA-DDLRINLWHLE 364 (400)
Q Consensus 350 las~-~D~~i~lW~~~ 364 (400)
|||+ .|++||+|++.
T Consensus 595 l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 595 IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEETTSCEEEEECC
T ss_pred EEEecCCCCEEEEecc
Confidence 8886 79999999973
No 8
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.5e-36 Score=289.78 Aligned_cols=261 Identities=16% Similarity=0.188 Sum_probs=193.6
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++||+|+.||+|+|||..++. .+..+..|. ..|.+++|+|+++
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~-----------~~~~~~~~~------------~~v~~~~~s~~~~-- 110 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTN-----------KVHAIPLRS------------SWVMTCAYAPSGN-- 110 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCC-----------EEEEEECSS------------SCEEEEEECTTSS--
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCC-----------cceEeecCC------------ccEEEEEECCCCC--
Confidence 479999999999999999999999999987542 345677776 3489999999874
Q ss_pred eEEEeeCCCeEEEEEccCCC--------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN--------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~--------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
.+++++.|++|++||+.++. +..|...|.++.|+|++ .+++++.|++|++||++++........+
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~l~s~s~d~~i~~wd~~~~~~~~~~~~h----- 183 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGH----- 183 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCC-----
T ss_pred EEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC--cEEEEECCCcEEEEECCCCcEEEEEcCC-----
Confidence 67778999999999997653 23567789999999964 5899999999999999988533211110
Q ss_pred ccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
...+..+. ..|++...++++.|++|++||++++... .. +.+|...|.+++|+|+
T Consensus 184 ~~~v~~~~----------~~~~~~~l~sg~~d~~v~~wd~~~~~~~----~~------------~~~h~~~v~~v~~~p~ 237 (340)
T 1got_B 184 TGDVMSLS----------LAPDTRLFVSGACDASAKLWDVREGMCR----QT------------FTGHESDINAICFFPN 237 (340)
T ss_dssp SSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTTCSEE----EE------------ECCCSSCEEEEEECTT
T ss_pred CCceEEEE----------ECCCCCEEEEEeCCCcEEEEECCCCeeE----EE------------EcCCcCCEEEEEEcCC
Confidence 01122222 2356666677778999999999876432 11 3467889999999999
Q ss_pred CcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEE
Q psy12356 236 GRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSIS 314 (400)
Q Consensus 236 g~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 314 (400)
|++|+++ .|++|+|||++++. ++..+..+ .+...|.+++
T Consensus 238 ~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~~---------------------------------------~~~~~v~~~~ 277 (340)
T 1got_B 238 GNAFATGSDDATCRLFDLRADQ-ELMTYSHD---------------------------------------NIICGITSVS 277 (340)
T ss_dssp SSEEEEEETTSCEEEEETTTTE-EEEEECCT---------------------------------------TCCSCEEEEE
T ss_pred CCEEEEEcCCCcEEEEECCCCc-EEEEEccC---------------------------------------CcccceEEEE
Confidence 9999975 69999999999753 44444311 0112355666
Q ss_pred EcCCCcEEeecccc----hh----------hcccccceeEEEEccCCCEEEEe-cCCeEEEEe
Q psy12356 315 VNSDQLTVEASPRG----IF----------ADAHTYHISSTSVNSDQETYLSA-DDLRINLWH 362 (400)
Q Consensus 315 ~s~dg~~~~~~~~~----~~----------~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~ 362 (400)
|+|||++++++... +| ..||...|.+++|+|||++|||+ .|++|+|||
T Consensus 278 ~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 278 FSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 66666665543211 11 14899999999999999999997 699999996
No 9
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=296.42 Aligned_cols=279 Identities=11% Similarity=0.082 Sum_probs=187.3
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|||||++||+++ |+++|+||..... ......++... .......++..|.+++|+|++
T Consensus 31 ~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d~--- 94 (344)
T 4gqb_B 31 RQLEAARYRSDGALLLGAS-SLSGRCWAGSLWL-----------FKDPCAAPNEG-FCSAGVQTEAGVADLTWVGER--- 94 (344)
T ss_dssp SEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEE-----------ESSGGGTTCGG-GCSEEEEESSCEEEEEEETTT---
T ss_pred CCEEEEEECCCCCEEEEEe-CCceEEeeceeee-----------eccccccCCcc-eeeeeeccCCCEEEEEEeCCC---
Confidence 3589999999999999998 7788888742100 00000000000 000111223569999999975
Q ss_pred eEEEeeCCCeEEEEEccCCCc--------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM--------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~--------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
++++++.|++|+|||+++++. ..|...|++++|+|++ ++|++++.|++|++||++++..+.....+ .
T Consensus 95 ~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg-~~l~sgs~d~~i~iwd~~~~~~~~~~~~h----~ 169 (344)
T 4gqb_B 95 GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSG-TQAVSGSKDICIKVWDLAQQVVLSSYRAH----A 169 (344)
T ss_dssp EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCC----S
T ss_pred eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCC-CEEEEEeCCCeEEEEECCCCcEEEEEcCc----C
Confidence 788999999999999988762 2577889999999985 79999999999999999998543221110 0
Q ss_pred ccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN 234 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp 234 (400)
..+..+.+ .+++ ...++++.|++|++||+++++.. ..+. ...|...+.+++|+|
T Consensus 170 -~~V~~~~~----------~~~~~~~l~s~s~D~~v~iwd~~~~~~~----~~~~----------~~~~~~~~~~~~~~p 224 (344)
T 4gqb_B 170 -AQVTCVAA----------SPHKDSVFLSCSEDNRILLWDTRCPKPA----SQIG----------CSAPGYLPTSLAWHP 224 (344)
T ss_dssp -SCEEEEEE----------CSSCTTEEEEEETTSCEEEEETTSSSCE----EECC--------------CCCEEEEEECS
T ss_pred -CceEEEEe----------cCCCCCceeeecccccccccccccccee----eeee----------cceeeccceeeeecC
Confidence 11222222 2333 34556678999999999976532 1111 113445789999999
Q ss_pred C-CcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCc-cc-CCCCCceeecCcccccceeeccCccceec
Q psy12356 235 S-GRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQ-LR-DPSNITALRVPQIKPIELTVEASPRRIFA 303 (400)
Q Consensus 235 d-g~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~-~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~ 303 (400)
+ +++|+++ .|++|+|||++++ .+++++.+|. +.|+|. ++ +++.|++|++|+....+
T Consensus 225 ~~~~~l~sg~~dg~v~~wd~~~~-~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~------------ 291 (344)
T 4gqb_B 225 QQSEVFVFGDENGTVSLVDTKST-SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSE------------ 291 (344)
T ss_dssp SCTTEEEEEETTSEEEEEESCC---CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCE------------
T ss_pred CCCcceEEeccCCcEEEEECCCC-cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCc------------
Confidence 5 5677764 6899999999986 4788888885 345653 33 45666677766542110
Q ss_pred cccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCE-EEEe-cCCeEEEEeCcc
Q psy12356 304 NAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQET-YLSA-DDLRINLWHLEI 365 (400)
Q Consensus 304 ~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~-las~-~D~~i~lW~~~~ 365 (400)
+ + ...||.+.|++|+|||||+. |+|+ .|++|++|++.+
T Consensus 292 ------~--~----------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~ 331 (344)
T 4gqb_B 292 ------L--F----------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT 331 (344)
T ss_dssp ------E--E----------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred ------E--E----------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence 0 0 01489999999999999975 5676 699999999975
No 10
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=288.68 Aligned_cols=270 Identities=11% Similarity=0.101 Sum_probs=194.3
Q ss_pred eeEEEEEECCC----CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEec
Q psy12356 4 YMREASQRFSD----GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR 79 (400)
Q Consensus 4 ~~v~~v~fspd----G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~ 79 (400)
..|++|+|+|+ +++||||+.|++|+||+..+. .......+.+|.. .|.+++|+|+
T Consensus 33 ~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~---------~~~~~~~l~gh~~------------~v~~~~~~~~ 91 (321)
T 3ow8_A 33 DAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDE---------RLDLQWSLEGHQL------------GVVSVDISHT 91 (321)
T ss_dssp SCEEEEEEC-------CEEEEEETTSCEEEEEEETT---------EEEEEEEECCCSS------------CEEEEEECSS
T ss_pred CcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCC---------CeeeeeeeccCCC------------CEEEEEECCC
Confidence 46999999985 679999999999999998753 2233446788874 4999999998
Q ss_pred cCCceEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 80 KNQAHFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 80 ~~~~~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
++ .+++++.|++|+|||+.+++. ..+...+.+++|+|++ ++|++++.|++|++||++++....... . .
T Consensus 92 ~~--~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~g~~dg~v~i~~~~~~~~~~~~~----~-~ 163 (321)
T 3ow8_A 92 LP--IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDS-QYLATGTHVGKVNIFGVESGKKEYSLD----T-R 163 (321)
T ss_dssp SS--EEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTS-SEEEEECTTSEEEEEETTTCSEEEEEE----C-S
T ss_pred CC--EEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCcEEEEEcCCCceeEEec----C-C
Confidence 64 677789999999999988763 2345568889999985 799999999999999999874321100 0 0
Q ss_pred ccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
...+..+ ...|++...++++.||.|++||+++++.. .. +.+|..+|.+++|+|+
T Consensus 164 ~~~v~~~----------~~spdg~~lasg~~dg~i~iwd~~~~~~~----~~------------~~~h~~~v~~l~~spd 217 (321)
T 3ow8_A 164 GKFILSI----------AYSPDGKYLASGAIDGIINIFDIATGKLL----HT------------LEGHAMPIRSLTFSPD 217 (321)
T ss_dssp SSCEEEE----------EECTTSSEEEEEETTSCEEEEETTTTEEE----EE------------ECCCSSCCCEEEECTT
T ss_pred CceEEEE----------EECCCCCEEEEEcCCCeEEEEECCCCcEE----EE------------EcccCCceeEEEEcCC
Confidence 0111122 23466766777788999999999876532 11 3467789999999999
Q ss_pred CcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccccceeeccCccceecccc
Q psy12356 236 GRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAH 306 (400)
Q Consensus 236 g~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 306 (400)
|++|+++ .|++|+|||++++. ++..+.+|. +.|+|+++ +++.++++++|++...+.
T Consensus 218 ~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-------------- 282 (321)
T 3ow8_A 218 SQLLVTASDDGYIKIYDVQHAN-LAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-------------- 282 (321)
T ss_dssp SCEEEEECTTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE--------------
T ss_pred CCEEEEEcCCCeEEEEECCCcc-eeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE--------------
Confidence 9999975 68999999999763 566676663 23444432 344455555554321100
Q ss_pred ccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCc
Q psy12356 307 TYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLE 364 (400)
Q Consensus 307 ~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~ 364 (400)
+ .. ..+|...|.+++|+|||++|+|+ .|++|+|||..
T Consensus 283 ---~-----------------~~-~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p 320 (321)
T 3ow8_A 283 ---V-----------------HT-FFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP 320 (321)
T ss_dssp ---E-----------------EE-ECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred ---E-----------------EE-EcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence 0 00 13799999999999999999997 79999999963
No 11
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1e-35 Score=286.70 Aligned_cols=301 Identities=9% Similarity=0.100 Sum_probs=198.3
Q ss_pred eeEEEEEE-----CC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 4 YMREASQR-----FS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 4 ~~v~~v~f-----sp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
..|++|+| +| ||++||||+.|++|+|||+.+.... .....+...+.+|.. .|.+++|+
T Consensus 22 ~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~----~~~~~~~~~l~~h~~------------~V~~~~~~ 85 (343)
T 2xzm_R 22 DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQN----GYFGIPHKALTGHNH------------FVSDLALS 85 (343)
T ss_dssp SCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCS----SBSEEEEEEECCCSS------------CEEEEEEC
T ss_pred hhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcc----cccccccchhccCCC------------ceEEEEEC
Confidence 46899999 77 9999999999999999998753210 001234567788873 49999999
Q ss_pred eccCCceEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceecc
Q psy12356 78 RRKNQAHFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIE 153 (400)
Q Consensus 78 p~~~~~~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~ 153 (400)
|++. .+++++.|++|+|||+++++ +..|...|++++|+|++ ++|++++.|++|++||++......... ...
T Consensus 86 ~~~~--~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~-~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~ 160 (343)
T 2xzm_R 86 QENC--FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDN-RQILSAGAEREIKLWNILGECKFSSAE--KEN 160 (343)
T ss_dssp SSTT--EEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSST-TEEEEEETTSCEEEEESSSCEEEECCT--TTS
T ss_pred CCCC--EEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCC-CEEEEEcCCCEEEEEeccCCceeeeec--ccC
Confidence 9864 67778999999999999886 34678899999999985 789999999999999997542110000 000
Q ss_pred CcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 154 GTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
. ...+..+.+++.........+.....++++.||+|++||.+.. . .. .+.+|...|.+++|+
T Consensus 161 ~-~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~----~~------------~~~~h~~~v~~~~~s 222 (343)
T 2xzm_R 161 H-SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-I----RY------------TFKAHESNVNHLSIS 222 (343)
T ss_dssp C-SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE-E----EE------------EEECCSSCEEEEEEC
T ss_pred C-CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc-e----eE------------EEcCccccceEEEEC
Confidence 0 0011112222110000011122344566678999999995421 1 01 134688899999999
Q ss_pred CCCcEEEEe-cCCeEEEEeCCCCCCceeeec-CC-----CcCCCCcccCCCCCceeecCcccccceeeccCccceecccc
Q psy12356 234 NSGRYMISR-DYLCVKVWDLHMESRPVETYP-TH-----TKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAH 306 (400)
Q Consensus 234 pdg~~las~-~D~tIklWD~~~~~~~l~~~~-~h-----~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 306 (400)
|+|++|+++ .|++|+|||+.....+...+. ++ .+.|++++++.+.+..+++|++...+.. .
T Consensus 223 ~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~~------~------ 290 (343)
T 2xzm_R 223 PNGKYIATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSKA------P------ 290 (343)
T ss_dssp TTSSEEEEEETTCEEEEEESSCCSSCSEEEECSSCEEEEEECSSSCEEEEEESSCEEEEESSSCCSC------S------
T ss_pred CCCCEEEEEcCCCeEEEEECCCCcccceeecCCCcEEEEEECCCCCEEEEECCCCEEEEEeCCCCCC------c------
Confidence 999999975 699999999965544555542 22 1456666665555666777765322110 0
Q ss_pred ccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCcc
Q psy12356 307 TYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEI 365 (400)
Q Consensus 307 ~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~ 365 (400)
+. .+.+.. .....-..+|...|++++|+|||++||++ .|++|++|++++
T Consensus 291 ---~~--~~~~~~-----~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 291 ---VC--TIEAEP-----ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp ---EE--ECCCCS-----GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred ---eE--EeecCc-----chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 00 000000 00000013789999999999999999997 799999999875
No 12
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=299.16 Aligned_cols=341 Identities=41% Similarity=0.562 Sum_probs=228.3
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++|+|+|||++||+|+.||+|+|||+.+.........+.+++...+++|.++++++.++.+++.|++++|+|+++..
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~ 108 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAA 108 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSS
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCcc
Confidence 57999999999999999999999999999875422222234555678899999888888888888899999999986434
Q ss_pred eEEEeeCCCeEEEEEccCCCc--------------------------------------------ccccccEEEEEEecC
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM--------------------------------------------EELNEVITAAEFHPI 119 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~--------------------------------------------~~~~~~V~sv~f~p~ 119 (400)
.+++++.|++|+|||+.++.. ..|...|++++|+|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 788899999999999976321 346678999999997
Q ss_pred CCCEEEEEeCCCeEEEEeccccc-ccccccceeccCcc--cceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeec
Q psy12356 120 DCNLFVYSSSKGTIRLCDMRAAA-LCDRHSKCLIEGTN--CNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDM 195 (400)
Q Consensus 120 ~~~~las~s~Dg~i~lWD~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~ 195 (400)
+ ++|+++ .|++|++||++... .............. ..+..+ ...|++ ...++++.||+|++||+
T Consensus 189 ~-~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~----------~~~p~~~~~l~s~~~dg~i~iwd~ 256 (447)
T 3dw8_B 189 Y-ETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAA----------EFHPNSCNTFVYSSSKGTIRLCDM 256 (447)
T ss_dssp S-SEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEE----------EECSSCTTEEEEEETTSCEEEEET
T ss_pred C-CEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEE----------EECCCCCcEEEEEeCCCeEEEEEC
Confidence 4 788998 89999999998542 11100000000000 112222 234555 56667778999999999
Q ss_pred ccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEEecCCeEEEEeCCCCCCceeeecCCC---------
Q psy12356 196 RAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHT--------- 266 (400)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~~D~tIklWD~~~~~~~l~~~~~h~--------- 266 (400)
+++..+....+.+..+..+.....+.+|...|.+++|+|+|++|+++++++|+|||+++...+++.+.+|.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCccccceeecccccccccccc
Confidence 98775444445555443322233345566699999999999999986559999999997556788888885
Q ss_pred -------------cCCCCccc-CCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccc----
Q psy12356 267 -------------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRG---- 328 (400)
Q Consensus 267 -------------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~---- 328 (400)
+.++|+++ +++.++.|++|++...+.... .+|..........+...........
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 408 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITL--------EASRENNKPRTVLKPRKVCASGKRKKDEI 408 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEE--------ECCSTTCCTTCBCCCCCEECSSCCCTTCE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceee--------eecccccccccccCCccccccCCcccccc
Confidence 45778754 578899999998865433210 1111110000000111111111100
Q ss_pred -hhhcccccceeEEEEccCCCEEEEecCCeEEEEeCc
Q psy12356 329 -IFADAHTYHISSTSVNSDQETYLSADDLRINLWHLE 364 (400)
Q Consensus 329 -~~~~gh~~~V~~i~fspDg~~las~~D~~i~lW~~~ 364 (400)
.....+...|..++|+|+|.+||++..+.+.+|..+
T Consensus 409 ~~~~~~~~~~i~~~~~~p~~~~la~~~~~~~~~~~~~ 445 (447)
T 3dw8_B 409 SVDSLDFNKKILHTAWHPKENIIAVATTNNLYIFQDK 445 (447)
T ss_dssp EGGGCCTTSCCCEEEECSSSSEEEEECSSCEEEEECC
T ss_pred cccccccCCceeEEEECCCCCEEEEEecceeeeeccc
Confidence 011245678999999999999999865568898743
No 13
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.8e-35 Score=286.81 Aligned_cols=264 Identities=14% Similarity=0.175 Sum_probs=188.8
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++||||+.||+|+|||..+.. ....+..|. ..|.+++|+|++.
T Consensus 65 ~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~-----------~~~~~~~~~------------~~v~~~~~sp~g~-- 119 (354)
T 2pbi_B 65 NKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTN-----------KEHAVTMPC------------TWVMACAYAPSGC-- 119 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC-----------EEEEEECSS------------SCCCEEEECTTSS--
T ss_pred CeEEEEEECCCCCEEEEEeCCCeEEEEECCCCC-----------cceEEecCC------------CCEEEEEECCCCC--
Confidence 469999999999999999999999999987532 234556665 3488999999874
Q ss_pred eEEEeeCCCeEEEEEccCCC----------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceecc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN----------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIE 153 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~----------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~ 153 (400)
.+++++.|+++++|++.... +..|...|.+++|+|++ ..|++++.|++|++||++++.....+..+
T Consensus 120 ~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~s~D~~v~lwd~~~~~~~~~~~~h--- 195 (354)
T 2pbi_B 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSD-MQILTASGDGTCALWDVESGQLLQSFHGH--- 195 (354)
T ss_dssp EEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSS-SEEEEEETTSEEEEEETTTCCEEEEEECC---
T ss_pred EEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCC-CEEEEEeCCCcEEEEeCCCCeEEEEEcCC---
Confidence 77778899999999986432 23467789999999985 78999999999999999988543221110
Q ss_pred CcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 154 GTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
. ..+..+.+. ..+++...++++.||+|++||++++... +. +.+|...|.+++|+
T Consensus 196 -~-~~v~~~~~~--------~~~~g~~l~sgs~Dg~v~~wd~~~~~~~----~~------------~~~h~~~v~~v~~~ 249 (354)
T 2pbi_B 196 -G-ADVLCLDLA--------PSETGNTFVSGGCDKKAMVWDMRSGQCV----QA------------FETHESDVNSVRYY 249 (354)
T ss_dssp -S-SCEEEEEEC--------CCSSCCEEEEEETTSCEEEEETTTCCEE----EE------------ECCCSSCEEEEEEC
T ss_pred -C-CCeEEEEEE--------eCCCCCEEEEEeCCCeEEEEECCCCcEE----EE------------ecCCCCCeEEEEEe
Confidence 0 011111121 1123445666778999999999976532 12 34678899999999
Q ss_pred CCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEE
Q psy12356 234 NSGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINS 312 (400)
Q Consensus 234 pdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 312 (400)
|+|++|+++ .|++|||||++.+. ++..+..+. +...+.+
T Consensus 250 p~~~~l~s~s~D~~v~lwd~~~~~-~~~~~~~~~---------------------------------------~~~~~~~ 289 (354)
T 2pbi_B 250 PSGDAFASGSDDATCRLYDLRADR-EVAIYSKES---------------------------------------IIFGASS 289 (354)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTE-EEEEECCTT---------------------------------------CCSCEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCc-EEEEEcCCC---------------------------------------cccceeE
Confidence 999999975 69999999999753 444443221 0112334
Q ss_pred EEEcCCCcEEeeccc----ch----------hhcccccceeEEEEccCCCEEEEe-cCCeEEEEe
Q psy12356 313 ISVNSDQLTVEASPR----GI----------FADAHTYHISSTSVNSDQETYLSA-DDLRINLWH 362 (400)
Q Consensus 313 i~~s~dg~~~~~~~~----~~----------~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~ 362 (400)
++|+|||+++++... ++ ...+|...|++++|||||++|||+ .|++|+||+
T Consensus 290 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 290 VDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 444444444433211 00 014899999999999999999997 699999996
No 14
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.9e-35 Score=281.42 Aligned_cols=288 Identities=9% Similarity=0.071 Sum_probs=201.0
Q ss_pred eeEEEEEECCC-CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFSD-GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fspd-G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
+.|++|+|+|+ |++|||||.||+|+|||+...+. ....+.+++++|.. .|.+++|+|+++
T Consensus 39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~------~~~~~~~~l~~h~~------------~V~~~~~s~dg~- 99 (340)
T 4aow_A 39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDET------NYGIPQRALRGHSH------------FVSDVVISSDGQ- 99 (340)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSS------CSEEEEEEECCCSS------------CEEEEEECTTSS-
T ss_pred CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc------ccceeeEEEeCCCC------------CEEEEEECCCCC-
Confidence 56999999997 68999999999999999976431 12234567888874 599999999874
Q ss_pred ceEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccc
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
.+++++.|+.|++|+...+.. ..+...+....++|++ ++|++++.|+.+++||+......... .... ...
T Consensus 100 -~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~s~d~~~~~~d~~~~~~~~~~---~~~~-~~~ 173 (340)
T 4aow_A 100 -FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGSRDKTIKLWNTLGVCKYTVQ---DESH-SEW 173 (340)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEEC---SSSC-SSC
T ss_pred -EEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecC-ccceeecCCCeEEEEEeCCCceEEEE---eccc-cCc
Confidence 677789999999999987652 2344567888899975 78999999999999998766321100 0000 001
Q ss_pred eeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcE
Q psy12356 159 CQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRY 238 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~ 238 (400)
+..+.+.. .+.....++++.|++|++||++++... .. +.+|.+.|.+|+|+|+|++
T Consensus 174 v~~~~~~~--------~~~~~~~~s~~~d~~i~i~d~~~~~~~----~~------------~~~h~~~v~~~~~s~~~~~ 229 (340)
T 4aow_A 174 VSCVRFSP--------NSSNPIIVSCGWDKLVKVWNLANCKLK----TN------------HIGHTGYLNTVTVSPDGSL 229 (340)
T ss_dssp EEEEEECS--------CSSSCEEEEEETTSCEEEEETTTTEEE----EE------------ECCCSSCEEEEEECTTSSE
T ss_pred ccceEEcc--------CCCCcEEEEEcCCCEEEEEECCCCcee----eE------------ecCCCCcEEEEEECCCCCE
Confidence 11111110 112234455668999999999876532 11 3468889999999999999
Q ss_pred EEEe-cCCeEEEEeCCCCCCceeeecCCC------cCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceE
Q psy12356 239 MISR-DYLCVKVWDLHMESRPVETYPTHT------KEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHIN 311 (400)
Q Consensus 239 las~-~D~tIklWD~~~~~~~l~~~~~h~------~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 311 (400)
|+++ .|++|+|||+++. .++..+.+|. +.+++.+++++.++++++|++....... .+ ..+
T Consensus 230 l~s~s~Dg~i~iwd~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~------~~-~~~----- 296 (340)
T 4aow_A 230 CASGGKDGQAMLWDLNEG-KHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVD------EL-KQE----- 296 (340)
T ss_dssp EEEEETTCEEEEEETTTT-EEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEE------EE-CCC-----
T ss_pred EEEEeCCCeEEEEEeccC-ceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEE------ec-ccc-----
Confidence 9975 6999999999986 4677777664 3566666666667788887753221100 00 000
Q ss_pred EEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 312 SISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 312 ~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
.......+|...|++|+|||||++|||+ .|++|+|||+.++.
T Consensus 297 --------------~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 297 --------------VISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp ---------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred --------------ceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence 0001124799999999999999999997 69999999998754
No 15
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-35 Score=303.77 Aligned_cols=289 Identities=15% Similarity=0.257 Sum_probs=221.1
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++|++++.|++|++||.+. +.+..+.+|.. .|.+++|+|+++
T Consensus 263 ~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~------------~~~~~~~~h~~------------~v~~~~~~~~~~-- 316 (577)
T 2ymu_A 263 SSVNGVAFRPDGQTIASASDDKTVKLWNRNG------------QLLQTLTGHSS------------SVWGVAFSPDGQ-- 316 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTS------------CEEEEECCCSS------------CEEEEEECTTSS--
T ss_pred CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC------------cEEEEEecCCC------------CeEEEEECCCCC--
Confidence 4689999999999999999999999999753 23567788873 489999999874
Q ss_pred eEEEeeCCCeEEEEEccCCCc---ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccccee
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM---EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQ 160 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~---~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
.+++++.|++|++||+.+..+ ..+...|.+++|+|++ +.+++++.|++|++||.... +..... .. ...+.
T Consensus 317 ~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~~-~~~~~~----~~-~~~v~ 389 (577)
T 2ymu_A 317 TIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQ-LLQTLT----GH-SSSVR 389 (577)
T ss_dssp EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTCC-EEEEEE----CC-SSCEE
T ss_pred EEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCCC-EEEEec----CC-CCCeE
Confidence 777889999999999876653 4566789999999985 78999999999999996433 211110 00 01122
Q ss_pred ceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE
Q psy12356 161 GLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI 240 (400)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la 240 (400)
.+ .+++++...++++.|+.|++||... ... +. +.+|...|.+++|+||+++|+
T Consensus 390 ~~----------~~s~dg~~l~~~~~d~~v~~~~~~~-~~~----~~------------~~~~~~~v~~~~~s~d~~~l~ 442 (577)
T 2ymu_A 390 GV----------AFSPDGQTIASASDDKTVKLWNRNG-QLL----QT------------LTGHSSSVWGVAFSPDDQTIA 442 (577)
T ss_dssp EE----------EECTTSSCEEEEETTSEEEEECTTC-CEE----EE------------EECCSSCEEEEEECTTSSEEE
T ss_pred EE----------EECCCCCEEEEEeCCCEEEEEeCCC-CEE----EE------------ecCCCCCeEEEEECCCCCEEE
Confidence 22 2346666666777899999999542 211 11 346888999999999999999
Q ss_pred E-ecCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccccceeeccCccceeccccccceE
Q psy12356 241 S-RDYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAHTYHIN 311 (400)
Q Consensus 241 s-~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 311 (400)
+ +.|++|++||... .++..+.+|. +.|+|+++ +++.+++|++|+.. +...+.+ .+|...|+
T Consensus 443 ~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-------~~~~~~~-~~h~~~v~ 512 (577)
T 2ymu_A 443 SASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-------GQLLQTL-TGHSSSVR 512 (577)
T ss_dssp EEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-------SCEEEEE-ECCSSCEE
T ss_pred EEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-------CCEEEEE-eCCCCCEE
Confidence 7 4789999999753 4677888885 56899875 47788999999852 2222333 57999999
Q ss_pred EEEEcCCCcEEeeccc----chh---------hcccccceeEEEEccCCCEEEEe-cCCeEEEEe
Q psy12356 312 SISVNSDQLTVEASPR----GIF---------ADAHTYHISSTSVNSDQETYLSA-DDLRINLWH 362 (400)
Q Consensus 312 ~i~~s~dg~~~~~~~~----~~~---------~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~ 362 (400)
+++|+|||++|++++. ++| ..||+..|.+|+|||||++|+|+ .|++|++||
T Consensus 513 ~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 513 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 9999999999886542 111 15899999999999999999997 799999997
No 16
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=2.5e-34 Score=272.57 Aligned_cols=271 Identities=13% Similarity=0.131 Sum_probs=197.3
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++|+|+|||++||+|+.||+|+|||+.++ +.++.+.+|.. .|.+++|+|+++
T Consensus 14 ~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~-----------~~~~~~~~~~~------------~v~~~~~~~~~~-- 68 (304)
T 2ynn_A 14 DRVKGIDFHPTEPWVLTTLYSGRVELWNYETQ-----------VEVRSIQVTET------------PVRAGKFIARKN-- 68 (304)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTT-----------EEEEEEECCSS------------CEEEEEEEGGGT--
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCC-----------ceeEEeeccCC------------cEEEEEEeCCCC--
Confidence 46999999999999999999999999999753 34567888863 489999999874
Q ss_pred eEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+++++.|++|+|||+.+++ +..|...|++++|+|++ .+|++++.|++|++||++++..... .+... ...+
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sgs~D~~v~lWd~~~~~~~~~---~~~~h-~~~v 143 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQ---TFEGH-EHFV 143 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEEGGGTTEEEE---EECCC-CSCE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEeCCCCcEEEEEEcCCC-CEEEEECCCCeEEEEECCCCcchhh---hhccc-CCcE
Confidence 77788999999999999887 35678899999999985 7899999999999999987632110 00000 0111
Q ss_pred eceeccCchhhhhhccc-CcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC--CC
Q psy12356 160 QGLIVPESKREERQSSQ-NRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN--SG 236 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp--dg 236 (400)
..+.+ .| +....++++.|++|++||++..... ..+ ..+|...|..+.|+| ++
T Consensus 144 ~~v~~----------~p~~~~~l~sgs~D~~v~iwd~~~~~~~----~~~-----------~~~~~~~v~~~~~~~~~~~ 198 (304)
T 2ynn_A 144 MCVAF----------NPKDPSTFASGCLDRTVKVWSLGQSTPN----FTL-----------TTGQERGVNYVDYYPLPDK 198 (304)
T ss_dssp EEEEE----------CTTCTTEEEEEETTSEEEEEETTCSSCS----EEE-----------ECCCTTCEEEEEECCSTTC
T ss_pred EEEEE----------CCCCCCEEEEEeCCCeEEEEECCCCCcc----cee-----------ccCCcCcEEEEEEEEcCCC
Confidence 22222 24 4455667778999999999865321 111 124556799999987 77
Q ss_pred cEEEE-ecCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccccceeeccCccceeccccc
Q psy12356 237 RYMIS-RDYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAHT 307 (400)
Q Consensus 237 ~~las-~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (400)
++|++ +.|++|+|||++++ .++.++++|. +.|+++++ +++.+++|++|+....+. .
T Consensus 199 ~~l~s~s~D~~i~iWd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~------~-------- 263 (304)
T 2ynn_A 199 PYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV------E-------- 263 (304)
T ss_dssp CEEEEEETTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE------E--------
T ss_pred CEEEEEcCCCeEEEEeCCCC-ccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce------e--------
Confidence 88887 47999999999986 4788888884 45666643 466777777776532110 0
Q ss_pred cceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCC--EEEEecCCeEEEEeCcc
Q psy12356 308 YHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQE--TYLSADDLRINLWHLEI 365 (400)
Q Consensus 308 ~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~--~las~~D~~i~lW~~~~ 365 (400)
+.+ .+|...|.+++|+|+|. +||++.|+.+.+|++..
T Consensus 264 --------------------~~~-~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~ 302 (304)
T 2ynn_A 264 --------------------KTL-NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN 302 (304)
T ss_dssp --------------------EEE-CCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred --------------------eec-cCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence 001 35777899999999985 58888777788998764
No 17
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-34 Score=273.28 Aligned_cols=269 Identities=19% Similarity=0.273 Sum_probs=199.3
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++||+|+.||+|+||+..++ +....+.+|.. .|.+++|+|+++
T Consensus 24 ~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~-----------~~~~~~~~h~~------------~v~~~~~~~~~~-- 78 (312)
T 4ery_A 24 KAVSSVKFSPNGEWLASSSADKLIKIWGAYDG-----------KFEKTISGHKL------------GISDVAWSSDSN-- 78 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------CEEEEECCCSS------------CEEEEEECTTSS--
T ss_pred CcEEEEEECCCCCEEEEeeCCCeEEEEeCCCc-----------ccchhhccCCC------------ceEEEEEcCCCC--
Confidence 46999999999999999999999999998753 23556778873 499999999874
Q ss_pred eEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+++++.|++|+|||+++++. ..|...|.+++|+|++ ++|++++.|++|++||++++........+ ...+
T Consensus 79 ~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----~~~v 152 (312)
T 4ery_A 79 LLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS-NLIVSGSFDESVRIWDVKTGKCLKTLPAH-----SDPV 152 (312)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCE
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCEEEEEecCC-----CCcE
Confidence 777889999999999998763 4577889999999985 79999999999999999987432211100 0112
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
..+. ..+++...++++.||.|++||++++... ..+ ...+...+..++|+|+|++|
T Consensus 153 ~~~~----------~~~~~~~l~~~~~d~~i~~wd~~~~~~~----~~~-----------~~~~~~~~~~~~~~~~~~~l 207 (312)
T 4ery_A 153 SAVH----------FNRDGSLIVSSSYDGLCRIWDTASGQCL----KTL-----------IDDDNPPVSFVKFSPNGKYI 207 (312)
T ss_dssp EEEE----------ECTTSSEEEEEETTSCEEEEETTTCCEE----EEE-----------CCSSCCCEEEEEECTTSSEE
T ss_pred EEEE----------EcCCCCEEEEEeCCCcEEEEECCCCcee----eEE-----------eccCCCceEEEEECCCCCEE
Confidence 2222 2355555666778999999999876432 111 12345679999999999999
Q ss_pred EEe-cCCeEEEEeCCCCCCceeeecCCCc----------CCCCcc-cCCCCCceeecCcccccceeeccCccceeccccc
Q psy12356 240 ISR-DYLCVKVWDLHMESRPVETYPTHTK----------EENGQL-RDPSNITALRVPQIKPIELTVEASPRRIFANAHT 307 (400)
Q Consensus 240 as~-~D~tIklWD~~~~~~~l~~~~~h~~----------~~~g~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (400)
+++ .|++|++||++++ .+++.+.+|.. .+++.+ ++++.++.|++|++...+.
T Consensus 208 ~~~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~--------------- 271 (312)
T 4ery_A 208 LAATLDNTLKLWDYSKG-KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI--------------- 271 (312)
T ss_dssp EEEETTTEEEEEETTTT-EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE---------------
T ss_pred EEEcCCCeEEEEECCCC-cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh---------------
Confidence 874 6899999999986 46788887742 133443 3456666776665422110
Q ss_pred cceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe---cCCeEEEEeCc
Q psy12356 308 YHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA---DDLRINLWHLE 364 (400)
Q Consensus 308 ~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~---~D~~i~lW~~~ 364 (400)
+ .. ..+|...|.+++|+|++++||++ .|++|++|+.+
T Consensus 272 --------------~-----~~-~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 272 --------------V-----QK-LQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp --------------E-----EE-ECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred --------------h-----hh-hhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 0 01 14799999999999999999985 39999999865
No 18
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-35 Score=303.14 Aligned_cols=293 Identities=11% Similarity=0.050 Sum_probs=193.7
Q ss_pred eEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEecc----CCceEEEeeCCC
Q psy12356 17 LLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRK----NQAHFLLSTNDQ 92 (400)
Q Consensus 17 ~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~----~~~~~l~ss~D~ 92 (400)
++||++.|++|+|||+.+++. ......++.+|. ..|.+|+|+|++ ....+++++.|+
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~-------~~~~~~~l~~~~------------~~V~~v~wsp~~~~~~~~~~LAs~s~Dg 235 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTL-------HCVKVQTIVHSF------------GEVWDLKWHEGCHAPHLVGCLSFVSQEG 235 (524)
T ss_dssp -------CEEEEEEEEETTTC-------CEEEEEEEEECC------------CSEEEEEECSSCCCSSSSCEEEEEETTS
T ss_pred hhccCCCCceEEEEEccCCCC-------CceEEEEEEecC------------CcEEEEEECCCCCCCCCCceEEEEecCC
Confidence 344466889999999875421 111123455665 349999999972 123666788999
Q ss_pred eEEEEEccCCCc---------------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccc----ccccceecc
Q psy12356 93 SFNIVDIKPTNM---------------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALC----DRHSKCLIE 153 (400)
Q Consensus 93 tI~lWd~~~~~~---------------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~----~~~~~~~~~ 153 (400)
+|+|||+.++.. ..|...|++++|+|+ ..||+|+.||+|++||++++... ..|..
T Consensus 236 tvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~--~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~---- 309 (524)
T 2j04_B 236 TINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP--TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDS---- 309 (524)
T ss_dssp CEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS--SEEEEEETTSEEEEEETTBCSSCSEEEECSSS----
T ss_pred eEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC--CeEEEEeCCCEEEEEECCCCCCceEEeecccc----
Confidence 999999976531 235578999999985 47999999999999999876321 11111
Q ss_pred CcccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccccccc--CeEEE
Q psy12356 154 GTNCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIIS--SISDV 230 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v 230 (400)
.+..+.+ .+.+++ ...++++.|++|||||++++... +. +.+|.. .|.+|
T Consensus 310 ----~V~sv~~--------~~s~~g~~~laS~S~D~tvklWD~~~~~~~----~~------------~~~~~~~~~v~~v 361 (524)
T 2j04_B 310 ----YILSVST--------AYSDFEDTVVSTVAVDGYFYIFNPKDIATT----KT------------TVSRFRGSNLVPV 361 (524)
T ss_dssp ----CEEEEEE--------ECCTTSCCEEEEEETTSEEEEECGGGHHHH----CE------------EEEECSCCSCCCE
T ss_pred ----cEEEEEE--------EcCCCCCeEEEEeccCCeEEEEECCCCCcc----cc------------cccccccCcccce
Confidence 1122200 122454 55677788999999999986542 11 123432 47899
Q ss_pred EECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccccceeeccCccce
Q psy12356 231 KISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRI 301 (400)
Q Consensus 231 ~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~ 301 (400)
+|||+++.++++ .|++|||||++++. ++.++.+|. ++|+|+++ +++.++++++|++... ...+-.. .
T Consensus 362 ~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~-~ 437 (524)
T 2j04_B 362 VYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARR--LLHGIKN-S 437 (524)
T ss_dssp EEETTTTEEEEECSSSEEEEEETTCTT-CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS--TTTCC----
T ss_pred EeCCCcCeEEEeCCCCcEEEEECcccc-cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh--hcccccc-C
Confidence 999999988864 68999999999864 567788885 67899865 6889999999986421 1111000 0
Q ss_pred eccccccceEEEEEcCCCcEEeecc-----------c-chhhcccccceeEEEEccCCC---EEEEe-cCCeEEEEeCcc
Q psy12356 302 FANAHTYHINSISVNSDQLTVEASP-----------R-GIFADAHTYHISSTSVNSDQE---TYLSA-DDLRINLWHLEI 365 (400)
Q Consensus 302 ~~~~~~~~i~~i~~s~dg~~~~~~~-----------~-~~~~~gh~~~V~~i~fspDg~---~las~-~D~~i~lW~~~~ 365 (400)
-...+...|++++|+|||+.+.... . .....||...|++|+||||++ +||++ .|++||||+++.
T Consensus 438 ~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 438 SATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp ---CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 0011223578999999998654322 0 011258999999999999965 89998 689999999985
Q ss_pred C
Q psy12356 366 T 366 (400)
Q Consensus 366 ~ 366 (400)
.
T Consensus 518 ~ 518 (524)
T 2j04_B 518 E 518 (524)
T ss_dssp C
T ss_pred c
Confidence 3
No 19
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=1.3e-34 Score=296.55 Aligned_cols=291 Identities=16% Similarity=0.264 Sum_probs=221.7
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|||++||+++.|+.|++||.+. +.+..+.+|.. .|++++|+|+++
T Consensus 222 ~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~------------~~~~~~~~~~~------------~v~~v~~~~d~~-- 275 (577)
T 2ymu_A 222 SSVRGVAFSPDGQTIASASDDKTVKLWNRNG------------QLLQTLTGHSS------------SVNGVAFRPDGQ-- 275 (577)
T ss_dssp SCEEEEEECTTSSCEEEEETTSCEEEECTTS------------CEEEEECCCSS------------CEEEEEECTTSS--
T ss_pred CCEEEEEECCCCCEEEEEeCCCEEEEEeCCC------------CEEEEEecCCC------------CEEEEEEcCCCC--
Confidence 4588999999999999999999999999752 23567788874 499999999874
Q ss_pred eEEEeeCCCeEEEEEccCCC---cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccccee
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN---MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQ 160 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~---~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
.+++++.|++|++||..... +..|...|.+++|+|++ .+|++++.|++|++||+....+.. +... ...+.
T Consensus 276 ~l~~~~~d~~i~~w~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~t~~~d~~i~~w~~~~~~~~~-----~~~~-~~~v~ 348 (577)
T 2ymu_A 276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQHLQT-----LTGH-SSSVW 348 (577)
T ss_dssp EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTSCEEEE-----ECCC-SSCEE
T ss_pred EEEEEeCCCEEEEEeCCCcEEEEEecCCCCeEEEEECCCC-CEEEEEeCCCeEEEEeCCCCeeEE-----EeCC-CCCEE
Confidence 67778999999999976543 34577889999999985 789999999999999987653210 0000 01112
Q ss_pred ceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE
Q psy12356 161 GLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI 240 (400)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la 240 (400)
.+ ...|++...++++.||.|++||... ... . .+.+|...|.+++|+|||++|+
T Consensus 349 ~~----------~~s~~g~~l~~~~~dg~v~~~~~~~-~~~----~------------~~~~~~~~v~~~~~s~dg~~l~ 401 (577)
T 2ymu_A 349 GV----------AFSPDGQTIASASDDKTVKLWNRNG-QLL----Q------------TLTGHSSSVRGVAFSPDGQTIA 401 (577)
T ss_dssp EE----------EECTTSSEEEEEETTSEEEEEETTC-CEE----E------------EEECCSSCEEEEEECTTSSCEE
T ss_pred EE----------EECCCCCEEEEEeCCCEEEEEcCCC-CEE----E------------EecCCCCCeEEEEECCCCCEEE
Confidence 22 2346666667777899999999542 211 1 1346778999999999999999
Q ss_pred Ee-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccccceeeccCccceeccccccceE
Q psy12356 241 SR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAHTYHIN 311 (400)
Q Consensus 241 s~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 311 (400)
++ .|++|+|||.. ..+++.+.+|. +.|+++++ +++.++++++|+... ...+. ..+|...|+
T Consensus 402 ~~~~d~~v~~~~~~--~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-------~~~~~-~~~~~~~v~ 471 (577)
T 2ymu_A 402 SASDDKTVKLWNRN--GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-------QLLQT-LTGHSSSVR 471 (577)
T ss_dssp EEETTSEEEEECTT--CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS-------CEEEE-EECCSSCEE
T ss_pred EEeCCCEEEEEeCC--CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-------CEEEE-EcCCCCCEE
Confidence 74 68999999965 34678888885 46888865 577889999998532 11122 247899999
Q ss_pred EEEEcCCCcEEeeccc----chh---------hcccccceeEEEEccCCCEEEEe-cCCeEEEEeCc
Q psy12356 312 SISVNSDQLTVEASPR----GIF---------ADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLE 364 (400)
Q Consensus 312 ~i~~s~dg~~~~~~~~----~~~---------~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~ 364 (400)
+++|+|||++|++.+. ++| ..+|...|++|+|||||++||++ .|++|+|||..
T Consensus 472 ~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~ 538 (577)
T 2ymu_A 472 GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 538 (577)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred EEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC
Confidence 9999999999886542 111 14899999999999999999997 79999999964
No 20
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=4.7e-35 Score=291.28 Aligned_cols=283 Identities=14% Similarity=0.171 Sum_probs=185.3
Q ss_pred eEEEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.|+||+|+| ++++||+|+.||+|+|||+.... ......+.+|. ..|++|+|+|.. +.
T Consensus 121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~---------~~~~~~~~gH~------------~~V~~l~f~p~~-~~ 178 (435)
T 4e54_B 121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKD---------KPTFIKGIGAG------------GSITGLKFNPLN-TN 178 (435)
T ss_dssp CEEEEEECSSCTTCEEEEETTSCEEEECSSCCS---------CCEEECCCSSS------------CCCCEEEECSSC-TT
T ss_pred CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCC---------ceeEEEccCCC------------CCEEEEEEeCCC-CC
Confidence 599999999 67899999999999999997642 12233566786 459999999843 23
Q ss_pred eEEEeeCCCeEEEEEccCCCcc------cccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccc--ccccceeccCc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNME------ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALC--DRHSKCLIEGT 155 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~------~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~--~~~~~~~~~~~ 155 (400)
.+++++.|++|+|||++++.+. .+...+.+++|+|++ ++|++|+.||+|++||++...+. ..|..
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~g~~dg~i~~wd~~~~~~~~~~~h~~------ 251 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASS-RMVVTGDNVGNVILLNMDGKELWNLRMHKK------ 251 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTT-TEEEEECSSSBEEEEESSSCBCCCSBCCSS------
T ss_pred EEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCC-CEEEEEeCCCcEeeeccCcceeEEEecccc------
Confidence 7778899999999999876532 123357889999985 79999999999999999765321 11111
Q ss_pred ccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN 234 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp 234 (400)
.+..+.+ .|++ ...++++.|++|++||++....... + ....+|...|.+|+|+|
T Consensus 252 --~v~~v~~----------~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~----~---------~~~~~h~~~v~~~~~sp 306 (435)
T 4e54_B 252 --KVTHVAL----------NPCCDWFLATASVDQTVKIWDLRQVRGKAS----F---------LYSLPHRHPVNAACFSP 306 (435)
T ss_dssp --CEEEEEE----------CTTCSSEEEEEETTSBCCEEETTTCCSSSC----C---------SBCCBCSSCEEECCBCT
T ss_pred --eEEeeee----------cCCCceEEEEecCcceeeEEecccccccce----E---------EEeeeccccccceeECC
Confidence 1222222 2443 3456667899999999987543211 1 00236888999999999
Q ss_pred CCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEE
Q psy12356 235 SGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSI 313 (400)
Q Consensus 235 dg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i 313 (400)
||++|+++ .|++|+|||++++. ++..+.+|....... ...++. .+.+ ...+..+
T Consensus 307 dg~~l~s~~~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~------~~~~~~-~~~~-----------------~~~~~~~ 361 (435)
T 4e54_B 307 DGARLLTTDQKSEIRVYSASQWD-CPLGLIPHPHRHFQH------LTPIKA-AWHP-----------------RYNLIVV 361 (435)
T ss_dssp TSSEEEEEESSSCEEEEESSSSS-SEEEECCCCCCCCSS------SCCCBC-EECS-----------------SSSCEEE
T ss_pred CCCeeEEEcCCCEEEEEECCCCc-cceEEeccccccccc------ceeEEE-EEcC-----------------CCCEEEE
Confidence 99999974 69999999999875 455666664211000 000000 0000 0011112
Q ss_pred EEcCCCcEEeec--------------cc--chhhcccccceeEE-EEccCCCEEEEecCCeEEEEeCccC
Q psy12356 314 SVNSDQLTVEAS--------------PR--GIFADAHTYHISST-SVNSDQETYLSADDLRINLWHLEIT 366 (400)
Q Consensus 314 ~~s~dg~~~~~~--------------~~--~~~~~gh~~~V~~i-~fspDg~~las~~D~~i~lW~~~~~ 366 (400)
.+++|++.++.. +. ..+..+|...|.++ +|||||++||++.|++|+||+++.+
T Consensus 362 ~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~d~~i~iW~~~~g 431 (435)
T 4e54_B 362 GRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAMGYHILIWSQQEA 431 (435)
T ss_dssp ECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEECSSEEEECCCC--
T ss_pred EEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEcCCcEEEEECCcC
Confidence 222222111100 00 01124788889988 6999999999988889999999854
No 21
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=4.9e-34 Score=269.62 Aligned_cols=263 Identities=13% Similarity=0.168 Sum_probs=179.4
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++||||+.|++|+|||+.+. ..+++.++.+|+. .|.+|+|+|+..+.
T Consensus 10 ~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~---------~~~~~~~l~gH~~------------~V~~v~~s~~~~g~ 68 (297)
T 2pm7_B 10 EMIHDAVMDYYGKRMATCSSDKTIKIFEVEGE---------THKLIDTLTGHEG------------PVWRVDWAHPKFGT 68 (297)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEBCSS---------CBCCCEEECCCSS------------CEEEEEECCGGGCS
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEecCCC---------CcEEEEEEccccC------------CeEEEEecCCCcCC
Confidence 46899999999999999999999999999742 1234668889974 49999998752223
Q ss_pred eEEEeeCCCeEEEEEccCCCc------ccccccEEEEEEecCC-CCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM------EELNEVITAAEFHPID-CNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~------~~~~~~V~sv~f~p~~-~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
.+++++.|++|+|||++++.. ..|...|++++|+|+. +.+|++++.|++|++||++++..... ..+... .
T Consensus 69 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~--~~~~~h-~ 145 (297)
T 2pm7_B 69 ILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSP--IIIDAH-A 145 (297)
T ss_dssp EEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCC--EEEECC-S
T ss_pred EEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceee--eeeecc-c
Confidence 677889999999999987642 3466789999999972 47899999999999999987631100 000000 0
Q ss_pred cceeceeccCchhhh---hhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 157 CNCQGLIVPESKREE---RQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
..+..+.+++..... ....+++...++++.|++|++||++.+...-.. ...+.+|...|.+|+|+
T Consensus 146 ~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~------------~~~l~~H~~~V~~v~~s 213 (297)
T 2pm7_B 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVL------------ESTLEGHSDWVRDVAWS 213 (297)
T ss_dssp SCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEE------------EEEECCCSSCEEEEEEC
T ss_pred CccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEE------------EEEecCCCCceEEEEEC
Confidence 111222222110000 000012345667778999999999864311000 01245788999999999
Q ss_pred CCC---cEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccc
Q psy12356 234 NSG---RYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYH 309 (400)
Q Consensus 234 pdg---~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
|++ ++||++ .|++|+|||++++..+.... .+ .
T Consensus 214 p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~--------------------------------------~~-~----- 249 (297)
T 2pm7_B 214 PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKT--------------------------------------LL-K----- 249 (297)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE--------------------------------------ES-S-----
T ss_pred CCCCCceEEEEEECCCcEEEEEeCCCCCcccee--------------------------------------ee-e-----
Confidence 995 788874 69999999997532110000 00 0
Q ss_pred eEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 310 INSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 310 i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
..+|...|.+++|||||++||++ .|++|+||+.....
T Consensus 250 ---------------------~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g 287 (297)
T 2pm7_B 250 ---------------------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (297)
T ss_dssp ---------------------SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred ---------------------cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCC
Confidence 02466778899999999999997 79999999987543
No 22
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.6e-34 Score=280.58 Aligned_cols=292 Identities=15% Similarity=0.213 Sum_probs=193.3
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchh---hc---ccccccceeeEEEEE
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFD---YL---KSLEIEEKINKIRWL 77 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~---~~---~~~~~~~~V~~v~~s 77 (400)
..|.+++|||||++||+|+ |++++||++.++. .+..+.+|..... .+ ........|.+++|+
T Consensus 65 ~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~-----------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s 132 (393)
T 1erj_A 65 SVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGS-----------LVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFS 132 (393)
T ss_dssp SCCCEEEECTTSSEEEEEC-BSCEEEEETTTCC-----------EEEEECC-----------------CCCCBEEEEEEC
T ss_pred CEEEEEEECCCCCEEEEEc-CCcEEEEEecCCC-----------EEEEecCccccccccccccccccCCCceeEEEEEEC
Confidence 4688999999999999987 7899999997643 2334444432100 00 000112248999999
Q ss_pred eccCCceEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceecc
Q psy12356 78 RRKNQAHFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIE 153 (400)
Q Consensus 78 p~~~~~~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~ 153 (400)
|++. .+++++.|++|+|||+++++ +..|...|++++|+|++ ++|++++.|++|++||++++.......
T Consensus 133 ~dg~--~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~----- 204 (393)
T 1erj_A 133 PDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSG-DKLVSGSGDRTVRIWDLRTGQCSLTLS----- 204 (393)
T ss_dssp TTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTTEEEEEEE-----
T ss_pred CCCC--EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCC-CEEEEecCCCcEEEEECCCCeeEEEEE-----
Confidence 9874 67788999999999998876 35678889999999985 789999999999999999884321100
Q ss_pred CcccceeceeccCchhhhhhccc-CcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEE
Q psy12356 154 GTNCNCQGLIVPESKREERQSSQ-NRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKI 232 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~f 232 (400)
. ...+..+. ..+ ++...++++.|++|++||++++.... .+..+. ....+|...|.+++|
T Consensus 205 ~-~~~v~~~~----------~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~----~~~~~~-----~~~~~h~~~v~~v~~ 264 (393)
T 1erj_A 205 I-EDGVTTVA----------VSPGDGKYIAAGSLDRAVRVWDSETGFLVE----RLDSEN-----ESGTGHKDSVYSVVF 264 (393)
T ss_dssp C-SSCEEEEE----------ECSTTCCEEEEEETTSCEEEEETTTCCEEE----EEC-----------CCCSSCEEEEEE
T ss_pred c-CCCcEEEE----------EECCCCCEEEEEcCCCcEEEEECCCCcEEE----eecccc-----cCCCCCCCCEEEEEE
Confidence 0 00111111 223 55566677789999999998765321 111000 112368889999999
Q ss_pred CCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceE
Q psy12356 233 SNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHIN 311 (400)
Q Consensus 233 Spdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~ 311 (400)
+|+|++|+++ .|++|+|||+++... ..... .+. .+.+... ..+|...|.
T Consensus 265 ~~~g~~l~s~s~d~~v~~wd~~~~~~-~~~~~----~~~------------------------~~~~~~~-~~~h~~~v~ 314 (393)
T 1erj_A 265 TRDGQSVVSGSLDRSVKLWNLQNANN-KSDSK----TPN------------------------SGTCEVT-YIGHKDFVL 314 (393)
T ss_dssp CTTSSEEEEEETTSEEEEEEC--------------------------------------------CEEEE-EECCSSCEE
T ss_pred CCCCCEEEEEeCCCEEEEEECCCCCC-ccccc----CCC------------------------CCcceEE-EecccCcEE
Confidence 9999999975 699999999986532 11110 000 0000011 135777788
Q ss_pred EEEEcCCCcEEeecccc----hh----------hcccccceeEEEEcc------CCCEEEEe-cCCeEEEEeCcc
Q psy12356 312 SISVNSDQLTVEASPRG----IF----------ADAHTYHISSTSVNS------DQETYLSA-DDLRINLWHLEI 365 (400)
Q Consensus 312 ~i~~s~dg~~~~~~~~~----~~----------~~gh~~~V~~i~fsp------Dg~~las~-~D~~i~lW~~~~ 365 (400)
+++|+|+|+++++.+.. +| ..||...|.+++|+| ++++|||+ .|++|+||+++.
T Consensus 315 ~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 315 SVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 88888888877654321 11 248999999999886 78999997 799999999764
No 23
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=3.8e-34 Score=272.92 Aligned_cols=267 Identities=15% Similarity=0.139 Sum_probs=181.6
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++|+|+|||++||||+.|++|+|||+.++ ....+.++.+|+. .|.+|+|+|+..+.
T Consensus 14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~---------~~~~~~~l~gH~~------------~V~~v~~~~~~~~~ 72 (316)
T 3bg1_A 14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG---------GQILIADLRGHEG------------PVWQVAWAHPMYGN 72 (316)
T ss_dssp CCEEEEEECGGGCEEEEEETTTEEEEEEEETT---------EEEEEEEEECCSS------------CEEEEEECCGGGSS
T ss_pred CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC---------CcEEEEEEcCCCc------------cEEEEEeCCCCCCC
Confidence 47999999999999999999999999998753 2234567889974 49999998742223
Q ss_pred eEEEeeCCCeEEEEEccCCC------cccccccEEEEEEecCC-CCEEEEEeCCCeEEEEeccccccc---ccccceecc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN------MEELNEVITAAEFHPID-CNLFVYSSSKGTIRLCDMRAAALC---DRHSKCLIE 153 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~------~~~~~~~V~sv~f~p~~-~~~las~s~Dg~i~lWD~~~~~~~---~~~~~~~~~ 153 (400)
.+++++.|++|+|||++++. +..|...|++++|+|++ +.+|++++.|++|++||++.+... .....+.
T Consensus 73 ~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~-- 150 (316)
T 3bg1_A 73 ILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHT-- 150 (316)
T ss_dssp CEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSS--
T ss_pred EEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecccc--
Confidence 78888999999999998764 23577789999999973 478999999999999999875211 1000000
Q ss_pred CcccceeceeccCchh-hhh------hcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccC
Q psy12356 154 GTNCNCQGLIVPESKR-EER------QSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISS 226 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~-~~~------~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 226 (400)
..+..+.+++... ... .....+...++++.|++|++||++..... ... ..+.+|...
T Consensus 151 ---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~-~~~------------~~l~~h~~~ 214 (316)
T 3bg1_A 151 ---IGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQW-KEE------------QKLEAHSDW 214 (316)
T ss_dssp ---SCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCE-EEE------------ECCBCCSSC
T ss_pred ---CCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCcc-cee------------eecccCCCc
Confidence 0111111111000 000 00011234677788999999999743210 000 113578899
Q ss_pred eEEEEECCCC----cEEEE-ecCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccce
Q psy12356 227 ISDVKISNSG----RYMIS-RDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRI 301 (400)
Q Consensus 227 V~~v~fSpdg----~~las-~~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~ 301 (400)
|.+|+|+|++ ++||+ +.|++|+|||+.+.... ... . +.
T Consensus 215 V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~--~~~------------------~-----------------~~ 257 (316)
T 3bg1_A 215 VRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN--TWS------------------P-----------------KL 257 (316)
T ss_dssp EEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC--CCB------------------C-----------------CE
T ss_pred eEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc--chh------------------h-----------------hh
Confidence 9999999997 78887 47999999999853110 000 0 00
Q ss_pred eccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCCeeEEEEee
Q psy12356 302 FANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITDQSFNIVDI 375 (400)
Q Consensus 302 ~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~~~~~~~~~ 375 (400)
+ .+|...|.+++|||||++||++ .|++|+||+.....+...+-.+
T Consensus 258 ~-----------------------------~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~ 303 (316)
T 3bg1_A 258 L-----------------------------HKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDV 303 (316)
T ss_dssp E-----------------------------EECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEEC
T ss_pred h-----------------------------hcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeec
Confidence 0 2467789999999999999997 7999999998654433333333
No 24
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-34 Score=273.93 Aligned_cols=269 Identities=11% Similarity=0.154 Sum_probs=175.2
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeee-ec-cCcchhhcccccccceeeEEEEEeccC
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTF-QS-HEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~-h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
..|++++|+|+ +||+|+.|++|+|||+..+ ..+....+ .+ |. ..|.+|+|+|+++
T Consensus 15 ~~v~~~~~s~~--~las~~~D~~i~lw~~~~~---------~~~~~~~~~~~~h~------------~~v~~v~~sp~~~ 71 (330)
T 2hes_X 15 EKIWSFDFSQG--ILATGSTDRKIKLVSVKYD---------DFTLIDVLDETAHK------------KAIRSVAWRPHTS 71 (330)
T ss_dssp SCEEEEEEETT--EEEEEESSSCEEEEECSSS---------CCEEEEEECTTCCC------------SCEEEEEECTTSS
T ss_pred CceeeeccCCC--EEEEEcCCCEEEEEEecCC---------CeEEEEEEecCCcc------------CCEEEEEECCCCC
Confidence 46899999998 9999999999999999753 12233444 33 65 4599999999874
Q ss_pred CceEEEeeCCCeEEEEEccCC-------C----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccce
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPT-------N----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKC 150 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~-------~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~ 150 (400)
.+++++.|++|+|||++.. + +..|...|++++|+|++ ++||+++.|++|++||++..... ..+
T Consensus 72 --~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g-~~las~s~D~~v~iwd~~~~~~~---~~~ 145 (330)
T 2hes_X 72 --LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG-YYLATCSRDKSVWIWETDESGEE---YEC 145 (330)
T ss_dssp --EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTS-CEEEEEETTSCEEEEECCTTCCC---CEE
T ss_pred --EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCC-CEEEEEeCCCEEEEEeccCCCCC---eEE
Confidence 6778899999999998532 1 24577889999999985 79999999999999999543100 011
Q ss_pred eccCcc--cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeE
Q psy12356 151 LIEGTN--CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSIS 228 (400)
Q Consensus 151 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 228 (400)
+..+.. ..+..+ .+.|++...++++.|++|++||++.+.. .... .+.+|...|.
T Consensus 146 ~~~~~~h~~~v~~v----------~~~p~~~~l~s~s~D~~i~iW~~~~~~~--~~~~------------~~~~h~~~v~ 201 (330)
T 2hes_X 146 ISVLQEHSQDVKHV----------IWHPSEALLASSSYDDTVRIWKDYDDDW--ECVA------------VLNGHEGTVW 201 (330)
T ss_dssp EEEECCCSSCEEEE----------EECSSSSEEEEEETTSCEEEEEEETTEE--EEEE------------EECCCSSCEE
T ss_pred EEEeccCCCceEEE----------EECCCCCEEEEEcCCCeEEEEECCCCCe--eEEE------------EccCCCCcEE
Confidence 111111 112222 2346666677778899999999875421 0011 1347889999
Q ss_pred EEEECCC--CcEEEE-ecCCeEEEEeCCCCCC-------ceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCc
Q psy12356 229 DVKISNS--GRYMIS-RDYLCVKVWDLHMESR-------PVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASP 298 (400)
Q Consensus 229 ~v~fSpd--g~~las-~~D~tIklWD~~~~~~-------~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~ 298 (400)
+++|+|+ +.+|++ +.|++|+|||++.+.. ++..+.+
T Consensus 202 ~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~---------------------------------- 247 (330)
T 2hes_X 202 SSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD---------------------------------- 247 (330)
T ss_dssp EEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS----------------------------------
T ss_pred EEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc----------------------------------
Confidence 9999999 778886 4799999999975421 1222221
Q ss_pred cceeccccccceEEEEEcCCCcEEeeccc---c-------------hhhccccc-ceeEEEEcc--CCCEEEEe-cCCeE
Q psy12356 299 RRIFANAHTYHINSISVNSDQLTVEASPR---G-------------IFADAHTY-HISSTSVNS--DQETYLSA-DDLRI 358 (400)
Q Consensus 299 ~~~~~~~~~~~i~~i~~s~dg~~~~~~~~---~-------------~~~~gh~~-~V~~i~fsp--Dg~~las~-~D~~i 358 (400)
.|...|.+++|+|++.+++++.. + ....+|.. .|++++|+| |+++|||+ .|++|
T Consensus 248 ------~h~~~v~~v~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v 321 (330)
T 2hes_X 248 ------VHKRQVYNVAWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIV 321 (330)
T ss_dssp ------CCSSCEEEEEECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEE
T ss_pred ------ccccceEEEEEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcE
Confidence 13334444444443322221110 0 01136876 899999999 79999997 79999
Q ss_pred EEEeCcc
Q psy12356 359 NLWHLEI 365 (400)
Q Consensus 359 ~lW~~~~ 365 (400)
+||+++.
T Consensus 322 ~~W~~~~ 328 (330)
T 2hes_X 322 NFWSLEK 328 (330)
T ss_dssp EEEEC--
T ss_pred EEEEecc
Confidence 9999864
No 25
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-34 Score=282.52 Aligned_cols=313 Identities=11% Similarity=0.093 Sum_probs=220.9
Q ss_pred eeEEEEEECCCCC-eEEEe----------cCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceee
Q psy12356 4 YMREASQRFSDGE-LLATG----------DKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN 72 (400)
Q Consensus 4 ~~v~~v~fspdG~-~Las~----------s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~ 72 (400)
..|.+++|||||+ +||+| +.|++|+|||+.++.. .+++..+ .|. ..|.
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~--------~~~~~~~-~~~------------~~v~ 71 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADS--------EKPIASL-QVD------------SKFN 71 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGG--------CSCSCCC-CCS------------SCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCC--------CcEEEEE-ecC------------CceE
Confidence 4678999999997 99999 8999999999986421 1122222 343 4599
Q ss_pred EEEEEeccCCceEEEeeCCCeEEEEEccC----CC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccc
Q psy12356 73 KIRWLRRKNQAHFLLSTNDQSFNIVDIKP----TN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALC 144 (400)
Q Consensus 73 ~v~~sp~~~~~~~l~ss~D~tI~lWd~~~----~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~ 144 (400)
+++|+|++. .+++++.|++|+|||+.+ .. +..|...|++++|+|+++++|++++.|++|++||++++...
T Consensus 72 ~~~~s~~~~--~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 149 (416)
T 2pm9_A 72 DLDWSHNNK--IIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTES 149 (416)
T ss_dssp EEEECSSSS--CEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSC
T ss_pred EEEECCCCC--eEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccc
Confidence 999999874 677788999999999987 22 34577889999999985689999999999999999987410
Q ss_pred cc--ccceeccCc--ccceeceeccCchhhhhhcccC-cceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccc
Q psy12356 145 DR--HSKCLIEGT--NCNCQGLIVPESKREERQSSQN-RREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSF 219 (400)
Q Consensus 145 ~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (400)
.. ......... ...+..+. ..++ ....++++.||.|++||++.+... ..+..+. .
T Consensus 150 ~~~~~~~~~~~~~~~~~~v~~~~----------~~~~~~~~l~~~~~dg~v~iwd~~~~~~~----~~~~~~~------~ 209 (416)
T 2pm9_A 150 PSNYTPLTPGQSMSSVDEVISLA----------WNQSLAHVFASAGSSNFASIWDLKAKKEV----IHLSYTS------P 209 (416)
T ss_dssp TTTCCCBCCCCSCCSSCCCCEEE----------ECSSCTTEEEEESSSSCEEEEETTTTEEE----EEECCCC------C
T ss_pred cccccccccccccCCCCCeeEEE----------eCCCCCcEEEEEcCCCCEEEEECCCCCcc----eEEeccc------c
Confidence 00 000000000 01112222 2344 455666778999999999876532 2221110 0
Q ss_pred ccccccCeEEEEECCCC-cEEEEe-cCC---eEEEEeCCCCCCceeeec-CCC-------cCC-CCccc-CCCCCceeec
Q psy12356 220 FSEIISSISDVKISNSG-RYMISR-DYL---CVKVWDLHMESRPVETYP-THT-------KEE-NGQLR-DPSNITALRV 284 (400)
Q Consensus 220 ~~~h~~~V~~v~fSpdg-~~las~-~D~---tIklWD~~~~~~~l~~~~-~h~-------~~~-~g~~~-~~~~~~~i~l 284 (400)
..+|...|.+++|+|++ ++++++ .|+ +|++||++++..++..+. +|. +.+ ++.++ +++.++++++
T Consensus 210 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~ 289 (416)
T 2pm9_A 210 NSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLL 289 (416)
T ss_dssp SSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEE
T ss_pred ccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEE
Confidence 12446789999999997 577764 577 999999998766778888 785 456 77765 5778899999
Q ss_pred CcccccceeeccCccceeccccccceEEEEEcCCC-cEEeeccc----chhh----------c-----------------
Q psy12356 285 PQIKPIELTVEASPRRIFANAHTYHINSISVNSDQ-LTVEASPR----GIFA----------D----------------- 332 (400)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg-~~~~~~~~----~~~~----------~----------------- 332 (400)
|++...+. ...+ .+|...|.+++|+||+ +++++.+. ++|. .
T Consensus 290 wd~~~~~~------~~~~-~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (416)
T 2pm9_A 290 WNPESAEQ------LSQF-PARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNV 362 (416)
T ss_dssp ECSSSCCE------EEEE-ECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC------------------
T ss_pred eeCCCCcc------ceee-cCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccc
Confidence 98754332 1222 4688899999999999 77775432 1110 0
Q ss_pred c------------------cccceeEEEEccCCCEEEEe-cCCeEEEEeCccC
Q psy12356 333 A------------------HTYHISSTSVNSDQETYLSA-DDLRINLWHLEIT 366 (400)
Q Consensus 333 g------------------h~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~ 366 (400)
+ |...|.+++|||||++||++ .|++|+||++.++
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 363 SREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ----CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred cccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence 1 67788899999999999997 6999999998853
No 26
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6e-33 Score=270.11 Aligned_cols=283 Identities=10% Similarity=0.100 Sum_probs=186.6
Q ss_pred eeEEEEEECCCC-CeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe-ccC
Q psy12356 4 YMREASQRFSDG-ELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR-RKN 81 (400)
Q Consensus 4 ~~v~~v~fspdG-~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp-~~~ 81 (400)
..|++++|+|+| ++||+|+.||+|+|||+.+.. ......+.+|. ..|.+++|+| ++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---------~~~~~~~~~h~------------~~v~~~~~~~~~~- 131 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQN---------KTSFIQGMGPG------------DAITGMKFNQFNT- 131 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTT---------CEEEECCCSTT------------CBEEEEEEETTEE-
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcc---------cceeeecCCcC------------CceeEEEeCCCCC-
Confidence 468999999999 999999999999999998642 11111223565 4599999999 43
Q ss_pred CceEEEeeCCCeEEEEEccCCCcc------cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPTNME------ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~~~~------~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
..+++++.|++|++||+.+.... .+...|.+++|+|++ ++|++++.|++|++||++...+ .. +...
T Consensus 132 -~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~-~~----~~~h- 203 (383)
T 3ei3_B 132 -NQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSR-QMLATGDSTGRLLLLGLDGHEI-FK----EKLH- 203 (383)
T ss_dssp -EEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTT-TEEEEEETTSEEEEEETTSCEE-EE----EECS-
T ss_pred -CEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCC-CEEEEECCCCCEEEEECCCCEE-EE----eccC-
Confidence 26777889999999999865421 233679999999985 7999999999999999954311 11 0000
Q ss_pred ccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN 234 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp 234 (400)
...+..+. ..+++. ..++++.|++|++||+++......... ..+|...|.+++|+|
T Consensus 204 ~~~v~~~~----------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~~~~~s~ 260 (383)
T 3ei3_B 204 KAKVTHAE----------FNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIA-------------EMPHEKPVNAAYFNP 260 (383)
T ss_dssp SSCEEEEE----------ECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEE-------------EEECSSCEEEEEECT
T ss_pred CCcEEEEE----------ECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEE-------------EecCCCceEEEEEcC
Confidence 01122222 235554 566677899999999997432111111 115778999999999
Q ss_pred -CCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEE
Q psy12356 235 -SGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINS 312 (400)
Q Consensus 235 -dg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 312 (400)
+|++|+++ .|++|+|||++++. +++.+.+|.....+. ...++. .+ ..+..+..
T Consensus 261 ~~~~~l~~~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~------~~~~~~-~~-----------------~p~~~~~~ 315 (383)
T 3ei3_B 261 TDSTKLLTTDQRNEIRVYSSYDWS-KPDQIIIHPHRQFQH------LTPIKA-TW-----------------HPMYDLIV 315 (383)
T ss_dssp TTSCEEEEEESSSEEEEEETTBTT-SCSEEEECCBCCCTT------SCCCCC-EE-----------------CSSSSEEE
T ss_pred CCCCEEEEEcCCCcEEEEECCCCc-ccccccccccccccc------ccceEE-ec-----------------cCCCCceE
Confidence 99999974 68999999999874 456666553211000 000000 00 01112333
Q ss_pred EEEcCCCcEEeeccc--------------chhh-cccccceeEEEEccCCCEEEEecCCeEEEEeCcc
Q psy12356 313 ISVNSDQLTVEASPR--------------GIFA-DAHTYHISSTSVNSDQETYLSADDLRINLWHLEI 365 (400)
Q Consensus 313 i~~s~dg~~~~~~~~--------------~~~~-~gh~~~V~~i~fspDg~~las~~D~~i~lW~~~~ 365 (400)
++|+|||++ .++.. ..+. .+|...+..++|+|||++||++.|++|+||+++.
T Consensus 316 ~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~~~ 382 (383)
T 3ei3_B 316 AGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNRED 382 (383)
T ss_dssp EECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEECC-
T ss_pred EEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEecCC
Confidence 444444443 21110 0011 2367788888999999999998899999999874
No 27
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=4.9e-33 Score=292.76 Aligned_cols=295 Identities=13% Similarity=0.108 Sum_probs=198.2
Q ss_pred eeEEEEEECCCC-CeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFSDG-ELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fspdG-~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
..|++|+|+|++ ++|||||.|++|+|||+.+.... .....+.+.+|.. .|.+++|+|+++
T Consensus 383 ~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~------~~~~~~~~~~h~~------------~v~~v~~s~~g~- 443 (694)
T 3dm0_A 383 DMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKA------YGVAQRRLTGHSH------------FVEDVVLSSDGQ- 443 (694)
T ss_dssp SCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTC------SCEEEEEEECCSS------------CEEEEEECTTSS-
T ss_pred ceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcc------cccccceecCCCC------------cEEEEEECCCCC-
Confidence 469999999865 79999999999999998754211 1123457788873 599999999874
Q ss_pred ceEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccc
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
.+++++.|++|+|||+.++. +..|...|.+++|+|++ ++|++++.|++|++||+......... .....+ ...
T Consensus 444 -~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~-~~l~s~s~D~~i~iwd~~~~~~~~~~-~~~~~h-~~~ 519 (694)
T 3dm0_A 444 -FALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDN-RQIVSASRDRTIKLWNTLGECKYTIS-EGGEGH-RDW 519 (694)
T ss_dssp -EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTS-SCEEEEETTSCEEEECTTSCEEEEEC-SSTTSC-SSC
T ss_pred -EEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEECCCCcceeec-cCCCCC-CCc
Confidence 67788999999999998876 34678899999999985 78999999999999998655211000 000000 001
Q ss_pred eeceeccCchhhhhhcccCc--ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC
Q psy12356 159 CQGLIVPESKREERQSSQNR--REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG 236 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg 236 (400)
+..+.+ +++. ...++++.|++|++||++..... ..+.+|.+.|.+|+|||+|
T Consensus 520 v~~~~~----------~~~~~~~~l~s~s~d~~v~vwd~~~~~~~----------------~~~~~h~~~v~~v~~spdg 573 (694)
T 3dm0_A 520 VSCVRF----------SPNTLQPTIVSASWDKTVKVWNLSNCKLR----------------STLAGHTGYVSTVAVSPDG 573 (694)
T ss_dssp EEEEEE----------CSCSSSCEEEEEETTSCEEEEETTTCCEE----------------EEECCCSSCEEEEEECTTS
T ss_pred EEEEEE----------eCCCCcceEEEEeCCCeEEEEECCCCcEE----------------EEEcCCCCCEEEEEEeCCC
Confidence 111222 2332 34566678999999999865431 1134788999999999999
Q ss_pred cEEEEe-cCCeEEEEeCCCCCCceeeecCCC------cCCCCcccCCCCCceeecCcccccceeeccCccceeccccccc
Q psy12356 237 RYMISR-DYLCVKVWDLHMESRPVETYPTHT------KEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYH 309 (400)
Q Consensus 237 ~~las~-~D~tIklWD~~~~~~~l~~~~~h~------~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
++|+++ .|++|+|||++++. ++..+..+. +++++.+++.+.+..|++|++....... .+. .+..
T Consensus 574 ~~l~sg~~Dg~i~iwd~~~~~-~~~~~~~~~~v~~~~~sp~~~~l~~~~~~~i~iwd~~~~~~~~------~~~-~~~~- 644 (694)
T 3dm0_A 574 SLCASGGKDGVVLLWDLAEGK-KLYSLEANSVIHALCFSPNRYWLCAATEHGIKIWDLESKSIVE------DLK-VDLK- 644 (694)
T ss_dssp SEEEEEETTSBCEEEETTTTE-EEECCBCSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEE------EEC-CCCC-
T ss_pred CEEEEEeCCCeEEEEECCCCc-eEEEecCCCcEEEEEEcCCCcEEEEEcCCCEEEEECCCCCChh------hhc-cccc-
Confidence 999975 69999999999863 566665543 4677776655556668888775432211 000 0000
Q ss_pred eEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCc
Q psy12356 310 INSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLE 364 (400)
Q Consensus 310 i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~ 364 (400)
......+. .. ......|...|++++|||||++|+|+ .|++||||++.
T Consensus 645 --~~~~~~~~-----~~-~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 645 --AEAEKADN-----SG-PAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred --cccccccc-----cc-cccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 00000000 00 00001234458899999999999997 79999999985
No 28
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-32 Score=269.17 Aligned_cols=324 Identities=10% Similarity=0.038 Sum_probs=214.5
Q ss_pred eeEEEEEECCCCC-eEEEecCCCeEEEEEc----CCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe
Q psy12356 4 YMREASQRFSDGE-LLATGDKGGRVVIFQR----DPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR 78 (400)
Q Consensus 4 ~~v~~v~fspdG~-~Las~s~Dg~I~iwd~----~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp 78 (400)
..|++++|+|||+ +||+|+.||+|+|||+ .++...... .....+...+.+|.. ...+...|.+++|+|
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~ 118 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKL-TIIAELRHPFALSAS------SGKTTNQVTCLAWSH 118 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEE-EEEEEEECCCCCC------------CBCEEEEEECT
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccc-ccccccccccccccc------ccCCCCceEEEEEcC
Confidence 4689999999999 9999999999999999 654310000 000011112222200 001224699999999
Q ss_pred ccCCceEEEeeCCCeEEEEEccCCC---cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 79 RKNQAHFLLSTNDQSFNIVDIKPTN---MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 79 ~~~~~~~l~ss~D~tI~lWd~~~~~---~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
+++ .+++++.|++|+|||..... +..|...|.+++|+|++ ++|++++.|+.|++||++++.............
T Consensus 119 ~~~--~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~- 194 (425)
T 1r5m_A 119 DGN--SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNKDG-THIISMDVENVTILWNVISGTVMQHFELKETGG- 194 (425)
T ss_dssp TSS--EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECTTS-SEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred CCC--EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECCCC-CEEEEEecCCeEEEEECCCCcEEEEeeccccCc-
Confidence 864 67778899999999943332 34567889999999975 789999999999999998885432211100000
Q ss_pred ccceeceeccC--chhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 156 NCNCQGLIVPE--SKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 156 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
.......... .....+...++.. .+.++.||.|++||++.+... .. +.+|...|.+++|+
T Consensus 195 -~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~i~~~d~~~~~~~----~~------------~~~~~~~i~~~~~~ 256 (425)
T 1r5m_A 195 -SSINAENHSGDGSLGVDVEWVDDDK-FVIPGPKGAIFVYQITEKTPT----GK------------LIGHHGPISVLEFN 256 (425)
T ss_dssp ------------CCCBSCCEEEETTE-EEEECGGGCEEEEETTCSSCS----EE------------ECCCSSCEEEEEEE
T ss_pred -cceeeccccCCcceeeEEEEcCCCE-EEEEcCCCeEEEEEcCCCcee----ee------------eccCCCceEEEEEC
Confidence 0000000000 0000111123332 344567999999999875321 11 23677899999999
Q ss_pred CCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCcccCCCCCceeecCcccccceeeccCccceeccc
Q psy12356 234 NSGRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANA 305 (400)
Q Consensus 234 pdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 305 (400)
|++++|+++ .|++|++||++++ .++..+.+|. +.++|.+++.+.++.+++|++...+.. .. ...
T Consensus 257 ~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~-~~~ 328 (425)
T 1r5m_A 257 DTNKLLLSASDDGTLRIWHGGNG-NSQNCFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLL------AL-SIV 328 (425)
T ss_dssp TTTTEEEEEETTSCEEEECSSSB-SCSEEECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTTEEE------EE-EEC
T ss_pred CCCCEEEEEcCCCEEEEEECCCC-ccceEecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCCcEe------Ee-ccc
Confidence 999999875 6899999999986 4677887774 457775556788899999987543321 12 245
Q ss_pred cccceEEEEEcCCCcEEeeccc------------c--------------------hh--hccccc--ceeEEEEccCCCE
Q psy12356 306 HTYHINSISVNSDQLTVEASPR------------G--------------------IF--ADAHTY--HISSTSVNSDQET 349 (400)
Q Consensus 306 ~~~~i~~i~~s~dg~~~~~~~~------------~--------------------~~--~~gh~~--~V~~i~fspDg~~ 349 (400)
|...|.+++|+|||+++++... . .. ..+|.. .|++++|+|||++
T Consensus 329 ~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 408 (425)
T 1r5m_A 329 DGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNK 408 (425)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSE
T ss_pred CCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCce
Confidence 7888999999999998875331 1 11 136765 9999999999999
Q ss_pred EEEe-cCCeEEEEeCc
Q psy12356 350 YLSA-DDLRINLWHLE 364 (400)
Q Consensus 350 las~-~D~~i~lW~~~ 364 (400)
||++ .|++|++|+++
T Consensus 409 l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 409 ISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEEESSSCCEEEECC
T ss_pred EEEEecCceEEEEeec
Confidence 9997 79999999986
No 29
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.2e-32 Score=261.51 Aligned_cols=324 Identities=11% Similarity=0.072 Sum_probs=209.2
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++||+|+.|++|+|||+.++ ..+.+..+.+|. ..|.+++|+|+++
T Consensus 9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~---------~~~~~~~~~~h~------------~~v~~~~~~~~~~-- 65 (372)
T 1k8k_C 9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGN---------KWVQVHELKEHN------------GQVTGVDWAPDSN-- 65 (372)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETT---------EEEEEEEEECCS------------SCEEEEEEETTTT--
T ss_pred CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCC---------cEEeeeeecCCC------------CcccEEEEeCCCC--
Confidence 46899999999999999999999999998753 223566788887 3599999999864
Q ss_pred eEEEeeCCCeEEEEEccCCCc------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNC 157 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~ 157 (400)
.+++++.|++|++||+++++. ..+...|.+++|+|++ ++|++++.|+.|++||++.+...... .........
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~v~i~d~~~~~~~~~~-~~~~~~~~~ 143 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNE-KKFAVGSGSRVISICYFEQENDWWVC-KHIKKPIRS 143 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTS-SEEEEEETTSSEEEEEEETTTTEEEE-EEECTTCCS
T ss_pred EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCC-CEEEEEeCCCEEEEEEecCCCcceee-eeeecccCC
Confidence 777889999999999988752 3466789999999985 79999999999999999887421000 000000011
Q ss_pred ceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCC--CCCCcccccccccCeEEEEECCC
Q psy12356 158 NCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPE--DPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
.+..+. ..+++...++++.||.|++||++................ .......+.+|...|.+++|+|+
T Consensus 144 ~i~~~~----------~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 213 (372)
T 1k8k_C 144 TVLSLD----------WHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN 213 (372)
T ss_dssp CEEEEE----------ECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS
T ss_pred CeeEEE----------EcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC
Confidence 122222 235555566667899999999864322111000000000 00011124478889999999999
Q ss_pred CcEEEE-ecCCeEEEEeCCCCCCceeeecCCC-------cCCCCcccCCCCCceeecCcccc--cceeeccCccceeccc
Q psy12356 236 GRYMIS-RDYLCVKVWDLHMESRPVETYPTHT-------KEENGQLRDPSNITALRVPQIKP--IELTVEASPRRIFANA 305 (400)
Q Consensus 236 g~~las-~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~~~~~~~~i~l~~~~~--~~~~~~~~~~~~~~~~ 305 (400)
+++|++ +.|++|++||++++ .++..+.+|. +.++|++++.+.++.+++|++.. ......... ..
T Consensus 214 ~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~-----~~ 287 (372)
T 1k8k_C 214 GSRVAWVSHDSTVCLADADKK-MAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRL-----DV 287 (372)
T ss_dssp SSEEEEEETTTEEEEEEGGGT-TEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCC-----CC
T ss_pred CCEEEEEeCCCEEEEEECCCC-ceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeecc-----Cc
Confidence 999987 46899999999986 4788888874 45778876555788888887754 111110000 00
Q ss_pred cccceEE----EE-E---cCCCcEEeec-ccchhhcccccceeEEEEc-cCC---CEEEEe-cCCeEEEEeCccCCe
Q psy12356 306 HTYHINS----IS-V---NSDQLTVEAS-PRGIFADAHTYHISSTSVN-SDQ---ETYLSA-DDLRINLWHLEITDQ 368 (400)
Q Consensus 306 ~~~~i~~----i~-~---s~dg~~~~~~-~~~~~~~gh~~~V~~i~fs-pDg---~~las~-~D~~i~lW~~~~~~~ 368 (400)
+...... +. | ...++...+. .......+|...|++++|+ +|| ++|+|+ .|++|++|++...++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~ 364 (372)
T 1k8k_C 288 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 364 (372)
T ss_dssp C--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred cccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhH
Confidence 0000000 00 0 0001000000 0011124899999999955 777 999997 699999999876443
No 30
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.5e-33 Score=270.71 Aligned_cols=322 Identities=14% Similarity=0.114 Sum_probs=190.5
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++||+|+.|++|+|||+.++ ..+....+.+|. ..|.+++|+|+++
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~---------~~~~~~~~~~h~------------~~v~~~~~s~~~~-- 68 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVELYEQDGN---------GWKHARTFSDHD------------KIVTCVDWAPKSN-- 68 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCEEEEETT---------EEEECCCBCCCS------------SCEEEEEECTTTC--
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEEEEccCC---------ceEEEEEEecCC------------ceEEEEEEeCCCC--
Confidence 45899999999999999999999999999753 123456778887 4599999999864
Q ss_pred eEEEeeCCCeEEEEEccCCC-------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
.+++++.|++|+|||+.++. +..|...|++++|+|++ ++|++++.|++|++||++++...... ..+...-.
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~-~~~~~~h~ 146 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNE-DKFAVGSGARVISVCYFEQENDWWVS-KHLKRPLR 146 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTS-SCCEEEESSSCEEECCC-----CCCC-EEECSSCC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCC-CEEEEEecCCeEEEEEECCcccceee-eEeecccC
Confidence 77788999999999998765 23567789999999975 78999999999999999987420000 00111001
Q ss_pred cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCC--CCcccccccccCeEEEEECC
Q psy12356 157 CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDP--TNKSFFSEIISSISDVKISN 234 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~V~~v~fSp 234 (400)
..+..+. ..+++...++++.|++|++||++.............+...+ .....+ +|...|.+++|+|
T Consensus 147 ~~v~~~~----------~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp 215 (377)
T 3dwl_C 147 STILSLD----------WHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSP 215 (377)
T ss_dssp SCEEEEE----------ECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECT
T ss_pred CCeEEEE----------EcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECC
Confidence 1122222 23566566677789999999997543221110000000000 001113 7888999999999
Q ss_pred CCcEEEEe-cCCeEEEEeCCCCCCc---eeeecCCC-------cCCCCcccC-CCCCceeecCcccccceeeccCcccee
Q psy12356 235 SGRYMISR-DYLCVKVWDLHMESRP---VETYPTHT-------KEENGQLRD-PSNITALRVPQIKPIELTVEASPRRIF 302 (400)
Q Consensus 235 dg~~las~-~D~tIklWD~~~~~~~---l~~~~~h~-------~~~~g~~~~-~~~~~~i~l~~~~~~~~~~~~~~~~~~ 302 (400)
+|++|+++ .|++|+|||++++..+ +..+.+|. +.++|++++ ++.++.+ +|................
T Consensus 216 ~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~- 293 (377)
T 3dwl_C 216 SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG- 293 (377)
T ss_dssp TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC-
T ss_pred CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc-
Confidence 99999874 7899999999987532 66777775 457888764 4444444 554432221111110000
Q ss_pred ccccc-----------cceEEEEEcCCCcEEeecc-------cchhhcccccceeEEEEccCC-C---EEEEe-cCCeEE
Q psy12356 303 ANAHT-----------YHINSISVNSDQLTVEASP-------RGIFADAHTYHISSTSVNSDQ-E---TYLSA-DDLRIN 359 (400)
Q Consensus 303 ~~~~~-----------~~i~~i~~s~dg~~~~~~~-------~~~~~~gh~~~V~~i~fspDg-~---~las~-~D~~i~ 359 (400)
..... ..+..+.|++....+.... ......+|.+.|++|++.+++ . .|+|+ .|++|+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~ 373 (377)
T 3dwl_C 294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV 373 (377)
T ss_dssp CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence 00000 1123333333222111100 001123699999999976654 3 58886 699999
Q ss_pred EEeC
Q psy12356 360 LWHL 363 (400)
Q Consensus 360 lW~~ 363 (400)
|||+
T Consensus 374 iWdl 377 (377)
T 3dwl_C 374 LWTL 377 (377)
T ss_dssp EECC
T ss_pred EecC
Confidence 9985
No 31
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-31 Score=255.46 Aligned_cols=290 Identities=15% Similarity=0.106 Sum_probs=190.1
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++||+|+.||.|+|||+.++ +.+..+.+|. ..|.+++|+|+++
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~-----------~~~~~~~~h~------------~~v~~~~~~~~~~-- 87 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNG-----------ERLGTLDGHT------------GTIWSIDVDCFTK-- 87 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTC-----------CEEEEECCCS------------SCEEEEEECTTSS--
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCc-----------hhhhhhhhcC------------CcEEEEEEcCCCC--
Confidence 46999999999999999999999999998754 2456788887 3599999999864
Q ss_pred eEEEeeCCCeEEEEEccCCCc---ccccccEEEEEEecCCCCEEEEEeCC-----CeEEEEecccccccccccc----ee
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM---EELNEVITAAEFHPIDCNLFVYSSSK-----GTIRLCDMRAAALCDRHSK----CL 151 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~---~~~~~~V~sv~f~p~~~~~las~s~D-----g~i~lWD~~~~~~~~~~~~----~~ 151 (400)
.+++++.|++|++||+.+++. ..+...|.+++|+|++ ..+++++.+ +.|++||++.+........ ..
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~ 166 (369)
T 3zwl_B 88 YCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCG-NYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPI 166 (369)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTS-SEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCS
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCC-CEEEEecCCccCCCCEEEEEEecCCccceeeccccccee
Confidence 777889999999999998873 2356789999999985 789999998 9999999988743211000 00
Q ss_pred ccCcc----cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCe
Q psy12356 152 IEGTN----CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSI 227 (400)
Q Consensus 152 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 227 (400)
..... ..+..+ ...+++...+.++.||.|++||+++.... ... +..|...|
T Consensus 167 ~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~dg~i~i~d~~~~~~~---~~~------------~~~~~~~v 221 (369)
T 3zwl_B 167 HKIITHEGLDAATVA----------GWSTKGKYIIAGHKDGKISKYDVSNNYEY---VDS------------IDLHEKSI 221 (369)
T ss_dssp EEEECCTTCCCEEEE----------EECGGGCEEEEEETTSEEEEEETTTTTEE---EEE------------EECCSSCE
T ss_pred eeccCCcCccceeEE----------EEcCCCCEEEEEcCCCEEEEEECCCCcEe---EEE------------EecCCCce
Confidence 00000 011111 22355555666678999999999863211 111 33577899
Q ss_pred EEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCC------cCCCCcccC-CCCCceeecCcccccceeeccCcc
Q psy12356 228 SDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHT------KEENGQLRD-PSNITALRVPQIKPIELTVEASPR 299 (400)
Q Consensus 228 ~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~------~~~~g~~~~-~~~~~~i~l~~~~~~~~~~~~~~~ 299 (400)
.+++|+|++++|+++ .|++|++||++++. ++..+..+. +.++++++. ++.++...++.....
T Consensus 222 ~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--------- 291 (369)
T 3zwl_B 222 SDMQFSPDLTYFITSSRDTNSFLVDVSTLQ-VLKKYETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSAN--------- 291 (369)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSCEEEEEECSSSSEEEEEECCC-------------------
T ss_pred eEEEECCCCCEEEEecCCceEEEEECCCCc-eeeeecCCCCceeEEecCCCceEEEeecCCCceEEEEecC---------
Confidence 999999999999874 68999999999863 555554221 123333211 111111111110000
Q ss_pred ceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccC
Q psy12356 300 RIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEIT 366 (400)
Q Consensus 300 ~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~ 366 (400)
.....+.-+... .++.+ . ...+|...|.+++|+|||++||++ .|++|++|+++..
T Consensus 292 -----~~~~~i~~~d~~-~~~~~-----~-~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 292 -----EGKFEARFYHKI-FEEEI-----G-RVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp --------CEEEEEETT-TCCEE-----E-EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred -----CCcceeEEEecC-CCcch-----h-heecccCcEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 000001000000 01110 0 114899999999999999999997 6999999999753
No 32
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.2e-31 Score=263.51 Aligned_cols=292 Identities=14% Similarity=0.133 Sum_probs=203.1
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+....|+|||++||+|+.||+|+|||+.++ +....+.+|. ..|.+++|+|++. .
T Consensus 99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~h~------------~~v~~~~~~~~~~--~ 153 (420)
T 3vl1_A 99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFN-----------LQREIDQAHV------------SEITKLKFFPSGE--A 153 (420)
T ss_dssp EEEEEEECSSSCEEEEEETTSCEEEECTTSC-----------EEEEETTSSS------------SCEEEEEECTTSS--E
T ss_pred ceEEEEEecCCCEEEEEECCCCEEEEeCCCc-----------ceeeeccccc------------CccEEEEECCCCC--E
Confidence 3455678999999999999999999998743 2345666776 4599999999864 7
Q ss_pred EEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccccee
Q psy12356 85 FLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQ 160 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
+++++.|++|++||+.+++ +..|...|++++|+|++ ++|++++.|++|++||++++........+.. ....+.
T Consensus 154 l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~~~~v~ 230 (420)
T 3vl1_A 154 LISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRG-RNVLSASLDGTIRLWECGTGTTIHTFNRKEN--PHDGVN 230 (420)
T ss_dssp EEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEETTTTEEEEEECBTTB--TTCCEE
T ss_pred EEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEeECCCCceeEEeecCCC--CCCCcc
Confidence 7788999999999998876 34577889999999985 7899999999999999998854322111000 000011
Q ss_pred ceecc-----------CchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEE
Q psy12356 161 GLIVP-----------ESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISD 229 (400)
Q Consensus 161 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 229 (400)
.+.+. ......+...+++...++++.||.|++||++++.... .+ ..+|...|.+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~-----------~~~~~~~v~~ 295 (420)
T 3vl1_A 231 SIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI----QL-----------PSKFTCSCNS 295 (420)
T ss_dssp EEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE----EE-----------CCTTSSCEEE
T ss_pred EEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE----Ec-----------ccccCCCcee
Confidence 11110 0111223345677667777889999999998764321 11 1256788999
Q ss_pred EEECCCCc-EEEE-ecCCeEEEEeCCCCCCceeeecCC-C------cCCCCcc-cCCCCCceeecCcccccceeeccCcc
Q psy12356 230 VKISNSGR-YMIS-RDYLCVKVWDLHMESRPVETYPTH-T------KEENGQL-RDPSNITALRVPQIKPIELTVEASPR 299 (400)
Q Consensus 230 v~fSpdg~-~las-~~D~tIklWD~~~~~~~l~~~~~h-~------~~~~g~~-~~~~~~~~i~l~~~~~~~~~~~~~~~ 299 (400)
++|+|+++ +|++ +.|++|++||++++..++..+.+| . ..+++++ ++++.++++++|++...+. .+
T Consensus 296 ~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~~~~~~~-----~~ 370 (420)
T 3vl1_A 296 LTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPES-----ER 370 (420)
T ss_dssp EEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEEECCTTC-----CS
T ss_pred EEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEeccCCCC-----Cc
Confidence 99999999 8886 468999999999876667887764 2 2345554 4567788888887643211 00
Q ss_pred ceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCC----EEEEecCCeEEEEeCcc
Q psy12356 300 RIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQE----TYLSADDLRINLWHLEI 365 (400)
Q Consensus 300 ~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~----~las~~D~~i~lW~~~~ 365 (400)
.+. ..+. .....+|...|.+++|+|||+ .++++.++.+++|+++.
T Consensus 371 ~~~------------~~~~---------~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 371 PAI------------EFET---------PTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CEE------------CTTS---------CEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cce------------eccC---------ccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 000 0000 001137888999999999999 45556899999999863
No 33
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=4e-32 Score=262.84 Aligned_cols=231 Identities=10% Similarity=0.051 Sum_probs=169.0
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|.+|+|+||+ +|++|+.||+|+|||+.+++. .......+.+|+ ..|++|+|+|+++ .
T Consensus 84 ~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~-------~~~~~~~~~~H~------------~~V~~v~~spdg~--~ 141 (344)
T 4gqb_B 84 GVADLTWVGER-GILVASDSGAVELWELDENET-------LIVSKFCKYEHD------------DIVSTVSVLSSGT--Q 141 (344)
T ss_dssp CEEEEEEETTT-EEEEEETTSEEEEEEECTTSS-------CEEEEEEEECCS------------SCEEEEEECTTSS--E
T ss_pred CEEEEEEeCCC-eEEEEECCCEEEEEeccCCCc-------eeEeeccccCCC------------CCEEEEEECCCCC--E
Confidence 48999999996 678999999999999986531 111122345776 4599999999874 7
Q ss_pred EEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccccee
Q psy12356 85 FLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQ 160 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
+++++.|++|+|||+++++ +..|...|++++|+|++..+|++++.|++|++||+++++......... ......
T Consensus 142 l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~---~~~~~~ 218 (344)
T 4gqb_B 142 AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSA---PGYLPT 218 (344)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-------CCCEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecce---eeccce
Confidence 7788999999999999887 356788999999999987789999999999999999884322110000 001111
Q ss_pred ceeccCchhhhhhccc-CcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC-cE
Q psy12356 161 GLIVPESKREERQSSQ-NRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG-RY 238 (400)
Q Consensus 161 ~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg-~~ 238 (400)
.+.+ .+ +....++++.||+|++||+++++.. +. +.+|...|.+|+|||+| ++
T Consensus 219 ~~~~----------~p~~~~~l~sg~~dg~v~~wd~~~~~~~----~~------------~~~h~~~v~~v~fsp~g~~~ 272 (344)
T 4gqb_B 219 SLAW----------HPQQSEVFVFGDENGTVSLVDTKSTSCV----LS------------SAVHSQCVTGLVFSPHSVPF 272 (344)
T ss_dssp EEEE----------CSSCTTEEEEEETTSEEEEEESCC--CC----EE------------EECCSSCEEEEEECSSSSCC
T ss_pred eeee----------cCCCCcceEEeccCCcEEEEECCCCcEE----EE------------EcCCCCCEEEEEEccCCCeE
Confidence 1222 23 3445666778999999999976532 11 34788999999999998 47
Q ss_pred EEE-ecCCeEEEEeCCCCCCceeeecCCC-------cCCCCcc-c-CCCCCceeecCccc
Q psy12356 239 MIS-RDYLCVKVWDLHMESRPVETYPTHT-------KEENGQL-R-DPSNITALRVPQIK 288 (400)
Q Consensus 239 las-~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~-~-~~~~~~~i~l~~~~ 288 (400)
||+ +.|++|+|||++++. +..+.+|. ++|+|+. + +++.|++|++|++.
T Consensus 273 lasgs~D~~i~vwd~~~~~--~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 273 LASLSEDCSLAVLDSSLSE--LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp EEEEETTSCEEEECTTCCE--EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC
T ss_pred EEEEeCCCeEEEEECCCCc--EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECC
Confidence 876 479999999999763 45678885 5677763 3 46788888888764
No 34
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.3e-31 Score=298.39 Aligned_cols=321 Identities=14% Similarity=0.172 Sum_probs=228.6
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|||||++||+|+.||+|+|||+.++ +.+.++.+|. ..|.+++|+|++.
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~-----------~~~~~~~~h~------------~~v~~~~~s~~~~-- 670 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETG-----------EKLLDIKAHE------------DEVLCCAFSSDDS-- 670 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------CEEEEECCCS------------SCEEEEEECTTSS--
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCC-----------CEEEEeccCC------------CCEEEEEEecCCC--
Confidence 56999999999999999999999999999864 2456788887 3599999999874
Q ss_pred eEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCC-CCEEEEEeCCCeEEEEecccccccccccceeccCcccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPID-CNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~-~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
.+++++.|++|+|||+.+++. ..|...|++++|+|++ ..++++++.|++|++||++++........ . ...
T Consensus 671 ~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~----h-~~~ 745 (1249)
T 3sfz_A 671 YIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG----H-TNS 745 (1249)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC----C-SSC
T ss_pred EEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC----C-CCC
Confidence 677788999999999998873 4677889999999953 45889999999999999998843221110 0 011
Q ss_pred eeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcc----------------------------------
Q psy12356 159 CQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRH---------------------------------- 204 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~---------------------------------- 204 (400)
+..+. +++++...++++.||+|++||++++......
T Consensus 746 v~~~~----------~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~ 815 (1249)
T 3sfz_A 746 VNHCR----------FSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIV 815 (1249)
T ss_dssp EEEEE----------ECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEE
T ss_pred EEEEE----------EecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEE
Confidence 22222 2356666667778999999999875431100
Q ss_pred -----cccccCCCCCCCcccccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCC
Q psy12356 205 -----SKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENG 271 (400)
Q Consensus 205 -----~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g 271 (400)
+..|.............+|...|.+++|+|++++++++ .|++|++||+.++ .++..+.+|. +.++|
T Consensus 816 ~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~spdg 894 (1249)
T 3sfz_A 816 AAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSPDG 894 (1249)
T ss_dssp EETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTS
T ss_pred EcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECCCC
Confidence 00000000000001122677899999999999999975 6899999999986 4678888885 46788
Q ss_pred cc-cCCCCCceeecCccccccee-------------------------------eccCccceeccccccceEEEEEcCCC
Q psy12356 272 QL-RDPSNITALRVPQIKPIELT-------------------------------VEASPRRIFANAHTYHINSISVNSDQ 319 (400)
Q Consensus 272 ~~-~~~~~~~~i~l~~~~~~~~~-------------------------------~~~~~~~~~~~~~~~~i~~i~~s~dg 319 (400)
++ ++++.++++++|++...... ..+..... ...+...+.+++|+|+|
T Consensus 895 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~sp~g 973 (1249)
T 3sfz_A 895 SSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQI-DYLPEAQVSCCCLSPHL 973 (1249)
T ss_dssp SEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCE-EEECCSCEEEEEECTTS
T ss_pred CEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceE-EEcccCcEEEEEEcCCC
Confidence 75 45788899999986421000 00000000 01134568999999999
Q ss_pred cEEeecccc----hh----------hcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccC
Q psy12356 320 LTVEASPRG----IF----------ADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEIT 366 (400)
Q Consensus 320 ~~~~~~~~~----~~----------~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~ 366 (400)
++++..... .+ ..+|...|.+++|+|||++|+++ .|++|++|++..+
T Consensus 974 ~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~ 1035 (1249)
T 3sfz_A 974 EYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTG 1035 (1249)
T ss_dssp SEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTT
T ss_pred CEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCC
Confidence 988754321 11 14899999999999999999997 6999999998763
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=2.8e-31 Score=251.57 Aligned_cols=296 Identities=13% Similarity=0.116 Sum_probs=211.2
Q ss_pred eeeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 3 VYMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 3 ~~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
...|.+++|||||++||++..++.+.+|.... ..+.+. ..+|. +.|.+++|+|+++
T Consensus 9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~----------~~~~~~-~~~h~------------~~v~~~~~~~~~~- 64 (337)
T 1gxr_A 9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPR----------HARQIN-TLNHG------------EVVCAVTISNPTR- 64 (337)
T ss_dssp EEECCEEEECSSSCEEECCCCTTSSSSTTCCS----------EEEEEE-EECCS------------SCCCEEEECSSSS-
T ss_pred CCceeEEEECCCCCEEEeecCCCcEeccccCC----------ccccce-eccCC------------CceEEEEEecCCc-
Confidence 35688999999999999998888776665442 112222 23565 4599999999873
Q ss_pred ceEEEeeCCCeEEEEEccCCCc----c-----cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceecc
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTNM----E-----ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIE 153 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~~----~-----~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~ 153 (400)
.+++++ |++|+|||+.++.. . .+...|++++|+|++ ++|++++.|+.|++||++++..... .....
T Consensus 65 -~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~ 139 (337)
T 1gxr_A 65 -HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG-CTLIVGGEASTLSIWDLAAPTPRIK--AELTS 139 (337)
T ss_dssp -EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTS-SEEEEEESSSEEEEEECCCC--EEE--EEEEC
T ss_pred -EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCC-CEEEEEcCCCcEEEEECCCCCccee--eeccc
Confidence 455555 99999999987641 1 456789999999975 7899999999999999988742100 00000
Q ss_pred CcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 154 GTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
. ...+..+. ..+++...++++.||.|++||++++... .. +.+|...|.+++|+
T Consensus 140 ~-~~~i~~~~----------~~~~~~~l~~~~~dg~v~~~d~~~~~~~----~~------------~~~~~~~i~~~~~~ 192 (337)
T 1gxr_A 140 S-APACYALA----------ISPDSKVCFSCCSDGNIAVWDLHNQTLV----RQ------------FQGHTDGASCIDIS 192 (337)
T ss_dssp S-SSCEEEEE----------ECTTSSEEEEEETTSCEEEEETTTTEEE----EE------------ECCCSSCEEEEEEC
T ss_pred C-CCceEEEE----------ECCCCCEEEEEeCCCcEEEEeCCCCcee----ee------------eecccCceEEEEEC
Confidence 0 01112222 2355555556668999999999875432 11 23577889999999
Q ss_pred CCCcEEEEe-cCCeEEEEeCCCCCCceeeecCC------CcCCCCccc-CCCCCceeecCcccccceeeccCccceeccc
Q psy12356 234 NSGRYMISR-DYLCVKVWDLHMESRPVETYPTH------TKEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANA 305 (400)
Q Consensus 234 pdg~~las~-~D~tIklWD~~~~~~~l~~~~~h------~~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 305 (400)
|++++|+++ .|++|++||++++. ++..+... .+.++|+++ .++.++.+++|++...+.. ...+
T Consensus 193 ~~~~~l~~~~~dg~i~~~d~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~--------~~~~ 263 (337)
T 1gxr_A 193 NDGTKLWTGGLDNTVRSWDLREGR-QLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY--------QLHL 263 (337)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTE-EEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE--------EECC
T ss_pred CCCCEEEEEecCCcEEEEECCCCc-eEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeE--------EEcC
Confidence 999999874 68999999999863 45555422 146788865 4667888999987543321 1246
Q ss_pred cccceEEEEEcCCCcEEeecccc----h---------hhcccccceeEEEEccCCCEEEEe-cCCeEEEEeC
Q psy12356 306 HTYHINSISVNSDQLTVEASPRG----I---------FADAHTYHISSTSVNSDQETYLSA-DDLRINLWHL 363 (400)
Q Consensus 306 ~~~~i~~i~~s~dg~~~~~~~~~----~---------~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~ 363 (400)
|...|.+++|+|||+++++.... + ....|...|.+++|+|||++|+++ .|++|++|++
T Consensus 264 ~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 88899999999999988764321 1 123688999999999999999997 7999999986
No 36
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.2e-32 Score=265.26 Aligned_cols=274 Identities=12% Similarity=0.159 Sum_probs=174.1
Q ss_pred eeEEEEEECCCCCeEEEecCCC-------eEEEEEcCCCCccccCCCCccee--eeeeeccCcchhhcccccccceeeEE
Q psy12356 4 YMREASQRFSDGELLATGDKGG-------RVVIFQRDPLSKTSIPKRGEYNV--YSTFQSHEPEFDYLKSLEIEEKINKI 74 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg-------~I~iwd~~~~~~~~~~~~~~~~~--~~~~~~h~~~~~~~~~~~~~~~V~~v 74 (400)
|-|++|+|+|||++||+|+.|. +|+||++....... ...... ...+.+|+ ..|.++
T Consensus 15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~---~~~~~~~~~~~l~~~~------------~~v~s~ 79 (365)
T 4h5i_A 15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTE---KEQFHILSEFALEDND------------DSPTAI 79 (365)
T ss_dssp SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSH---HHHEEEEEEEECCTTS------------CCCCEE
T ss_pred CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcce---eeeeeeeeEEEccCCC------------CceEEE
Confidence 5699999999999999997644 59999987543110 000000 11334444 346677
Q ss_pred EEEeccCCceEEE-----------eeCCCeEEEEEccCCCc--c-----------cccccEEEEEEecCCCCEEE--EEe
Q psy12356 75 RWLRRKNQAHFLL-----------STNDQSFNIVDIKPTNM--E-----------ELNEVITAAEFHPIDCNLFV--YSS 128 (400)
Q Consensus 75 ~~sp~~~~~~~l~-----------ss~D~tI~lWd~~~~~~--~-----------~~~~~V~sv~f~p~~~~~la--s~s 128 (400)
++.++ .+++ ++.|+++|+|++.++.. + .+...+.+++|+||| +++| +++
T Consensus 80 ~~~~~----~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg-~~la~as~~ 154 (365)
T 4h5i_A 80 DASKG----IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREG-TVAAIASSK 154 (365)
T ss_dssp EEETT----EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTS-SCEEEEESC
T ss_pred EeCCC----EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCC-CEEEEEECC
Confidence 66432 3333 34588999999876531 0 123458899999986 5655 445
Q ss_pred CCCeEEEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccc
Q psy12356 129 SKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFF 208 (400)
Q Consensus 129 ~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~ 208 (400)
.|++|||||+.++...... .. ...+..+ .++|++...++++ ++.+++|+..++.....
T Consensus 155 ~d~~i~iwd~~~~~~~~~~-----~~-~~~V~~v----------~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~----- 212 (365)
T 4h5i_A 155 VPAIMRIIDPSDLTEKFEI-----ET-RGEVKDL----------HFSTDGKVVAYIT-GSSLEVISTVTGSCIAR----- 212 (365)
T ss_dssp SSCEEEEEETTTTEEEEEE-----EC-SSCCCEE----------EECTTSSEEEEEC-SSCEEEEETTTCCEEEE-----
T ss_pred CCCEEEEeECCCCcEEEEe-----CC-CCceEEE----------EEccCCceEEecc-ceeEEEEEeccCcceee-----
Confidence 6999999999988432210 00 0112223 3347776666655 45566666655432110
Q ss_pred cCCCCCCCcccccccccCeEEEEECCCCcEEEEe-cCC----eEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceee
Q psy12356 209 EEPEDPTNKSFFSEIISSISDVKISNSGRYMISR-DYL----CVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALR 283 (400)
Q Consensus 209 ~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~-~D~----tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~ 283 (400)
....+|...|.+|+|+|||++++++ .|+ ++++||+...... ....+
T Consensus 213 ---------~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~--~~~~~------------------ 263 (365)
T 4h5i_A 213 ---------KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS--VLRSK------------------ 263 (365)
T ss_dssp ---------ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE--EEEEE------------------
T ss_pred ---------eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec--ceeee------------------
Confidence 0122577789999999999999864 454 6888988754211 10000
Q ss_pred cCcccccceeeccCccceeccccccceEEEEEcCCCcEEeeccc---------------chhhcccccceeEEEEccCCC
Q psy12356 284 VPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPR---------------GIFADAHTYHISSTSVNSDQE 348 (400)
Q Consensus 284 l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~---------------~~~~~gh~~~V~~i~fspDg~ 348 (400)
. ..+|...|++++|||||++|++++. +.+..||...|++|+|||||+
T Consensus 264 -----------------~-~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~ 325 (365)
T 4h5i_A 264 -----------------Q-VTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDST 325 (365)
T ss_dssp -----------------E-EESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSC
T ss_pred -----------------e-ecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCC
Confidence 0 1245556777777777777765332 112358999999999999999
Q ss_pred EEEEe-cCCeEEEEeCccC
Q psy12356 349 TYLSA-DDLRINLWHLEIT 366 (400)
Q Consensus 349 ~las~-~D~~i~lW~~~~~ 366 (400)
+|||+ .|++||||++...
T Consensus 326 ~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 326 YVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEEEETTSEEEEEECCTT
T ss_pred EEEEEeCCCeEEEEEcCCC
Confidence 99997 7999999998643
No 37
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=5.5e-31 Score=249.48 Aligned_cols=245 Identities=11% Similarity=0.120 Sum_probs=175.5
Q ss_pred eeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCE
Q psy12356 48 VYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNL 123 (400)
Q Consensus 48 ~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~ 123 (400)
+.++|.+|. +.|.+|+|+|+++ .+++++.|++|+|||++++. +..+...|.+++|+|++ ++
T Consensus 5 ~~~~~~~h~------------~~V~~~~fsp~~~--~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~ 69 (304)
T 2ynn_A 5 IKKTFSNRS------------DRVKGIDFHPTEP--WVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARK-NW 69 (304)
T ss_dssp CEEEEEEEC------------SCEEEEEECSSSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGG-TE
T ss_pred eEEeecCCC------------CceEEEEECCCCC--EEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCC-CE
Confidence 456888997 4599999999875 77788999999999998876 24566789999999985 79
Q ss_pred EEEEeCCCeEEEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCc
Q psy12356 124 FVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDR 203 (400)
Q Consensus 124 las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~ 203 (400)
|++++.|++|++||++++........+ ...+..+ ...|++...++++.|++|++||++.+....
T Consensus 70 l~s~s~d~~i~vwd~~~~~~~~~~~~h-----~~~v~~~----------~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~- 133 (304)
T 2ynn_A 70 IIVGSDDFRIRVFNYNTGEKVVDFEAH-----PDYIRSI----------AVHPTKPYVLSGSDDLTVKLWNWENNWALE- 133 (304)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECC-----SSCEEEE----------EECSSSSEEEEEETTSCEEEEEGGGTTEEE-
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCC-----CCcEEEE----------EEcCCCCEEEEECCCCeEEEEECCCCcchh-
Confidence 999999999999999988543211110 0112222 234666667777899999999998653211
Q ss_pred ccccccCCCCCCCcccccccccCeEEEEECC-CCcEEEEe-cCCeEEEEeCCCCCCceeee-cCCC-------c--CCCC
Q psy12356 204 HSKFFEEPEDPTNKSFFSEIISSISDVKISN-SGRYMISR-DYLCVKVWDLHMESRPVETY-PTHT-------K--EENG 271 (400)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp-dg~~las~-~D~tIklWD~~~~~~~l~~~-~~h~-------~--~~~g 271 (400)
..+.+|...|.+++|+| ++.+|+++ .|++|+|||++.+.. ...+ .+|. + .+++
T Consensus 134 --------------~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 198 (304)
T 2ynn_A 134 --------------QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTP-NFTLTTGQERGVNYVDYYPLPDK 198 (304)
T ss_dssp --------------EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSC-SEEEECCCTTCEEEEEECCSTTC
T ss_pred --------------hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCc-cceeccCCcCcEEEEEEEEcCCC
Confidence 11347888999999999 67888874 699999999987643 3333 2332 1 2355
Q ss_pred cc-cCCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEE
Q psy12356 272 QL-RDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETY 350 (400)
Q Consensus 272 ~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~l 350 (400)
++ ++++.+++|++|++...+. +. . ..||...|.+++|+|++++|
T Consensus 199 ~~l~s~s~D~~i~iWd~~~~~~-----------------~~-----------------~-~~~h~~~v~~~~~~p~~~~l 243 (304)
T 2ynn_A 199 PYMITASDDLTIKIWDYQTKSC-----------------VA-----------------T-LEGHMSNVSFAVFHPTLPII 243 (304)
T ss_dssp CEEEEEETTSEEEEEETTTTEE-----------------EE-----------------E-EECCSSCEEEEEECSSSSEE
T ss_pred CEEEEEcCCCeEEEEeCCCCcc-----------------ce-----------------e-eCCCCCCEEEEEECCCCCEE
Confidence 54 3466777777776532110 00 0 14899999999999999999
Q ss_pred EEe-cCCeEEEEeCccCCeeEEEEe
Q psy12356 351 LSA-DDLRINLWHLEITDQSFNIVD 374 (400)
Q Consensus 351 as~-~D~~i~lW~~~~~~~~~~~~~ 374 (400)
||+ .|++|+|||+.+.+ +.+.+.
T Consensus 244 ~s~s~Dg~i~iWd~~~~~-~~~~~~ 267 (304)
T 2ynn_A 244 ISGSEDGTLKIWNSSTYK-VEKTLN 267 (304)
T ss_dssp EEEETTSCEEEEETTTCC-EEEEEC
T ss_pred EEEcCCCeEEEEECCCCc-eeeecc
Confidence 997 69999999998644 444444
No 38
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-31 Score=287.19 Aligned_cols=159 Identities=13% Similarity=0.057 Sum_probs=117.4
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+|+|+| |++||+++.|++|+|||+.+++ .+.++. |. ..|++++|+|+++
T Consensus 59 ~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~-----------~~~~~~-~~------------~~V~~v~~sp~g~-- 111 (902)
T 2oaj_A 59 SAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQK-----------VLTTVF-VP------------GKITSIDTDASLD-- 111 (902)
T ss_dssp CCEEEEEEET-TTEEEEEETTCEEEEEETTTCS-----------EEEEEE-CS------------SCEEEEECCTTCS--
T ss_pred CCEEEEEEcC-CCEEEEEECcCeEEEEECCCCc-----------EEEEEc-CC------------CCEEEEEECCCCC--
Confidence 3589999999 8899999999999999998542 344554 32 3499999999874
Q ss_pred eEEEeeCCCeEEEEEccCCCc---------------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccccccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM---------------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHS 148 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~---------------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~ 148 (400)
.+++++.|++|++||++++.+ +.|.+.|++++|+|++..++++++.|++| +||++++.....+.
T Consensus 112 ~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~ 190 (902)
T 2oaj_A 112 WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFI 190 (902)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEEC
T ss_pred EEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEe
Confidence 777889999999999987653 23567899999999766789999999999 99999885432211
Q ss_pred ceeccC-----------c--ccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccc
Q psy12356 149 KCLIEG-----------T--NCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAAL 200 (400)
Q Consensus 149 ~~~~~~-----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~ 200 (400)
.+.... . ...+.. +.++|++...++++.||+|++||+++++.
T Consensus 191 ~~~~~g~~~~~~~~~~~~~h~~~V~~----------v~fspdg~~lasgs~Dg~i~lWd~~~g~~ 245 (902)
T 2oaj_A 191 YELPPFAPGGDFSEKTNEKRTPKVIQ----------SLYHPNSLHIITIHEDNSLVFWDANSGHM 245 (902)
T ss_dssp CCBCTTCCCSTTCCCTTSCBCCCEEE----------EEECTTSSEEEEEETTCCEEEEETTTCCE
T ss_pred cccCCcCCCcccccccccccCCCeEE----------EEEcCCCCEEEEEECCCeEEEEECCCCcE
Confidence 110000 0 011222 23457777777888999999999987653
No 39
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.98 E-value=7.1e-31 Score=292.38 Aligned_cols=314 Identities=18% Similarity=0.219 Sum_probs=215.7
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|||++||+|+.||+|+|||+.++ +.+.++.+|. ..|.+++|+|+++..
T Consensus 658 ~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~-----------~~~~~~~~~~------------~~v~~~~~~~~~~~~ 714 (1249)
T 3sfz_A 658 DEVLCCAFSSDDSYIATCSADKKVKIWDSATG-----------KLVHTYDEHS------------EQVNCCHFTNKSNHL 714 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----------CEEEEEECCS------------SCEEEEEECSSSSCC
T ss_pred CCEEEEEEecCCCEEEEEeCCCeEEEEECCCC-----------ceEEEEcCCC------------CcEEEEEEecCCCce
Confidence 46899999999999999999999999999864 3466788887 359999999976544
Q ss_pred eEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccc----------
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSK---------- 149 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~---------- 149 (400)
.+++++.|++|++||+.++.+ ..|...|++++|+|++ +++++++.||+|++||++++........
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~-~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 793 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 793 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSST-TEEEEEESSSEEEEEEGGGTEEEEEEECCCCC------
T ss_pred EEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCC-CEEEEEECCCeEEEEeCCCCcccceecccccccccCCc
Confidence 566788999999999998873 4677889999999985 7999999999999999988743211000
Q ss_pred ------eeccCc------------c--cceece-------ec---cCchhhhhhcccCcceeecCCCCCeEEEeeccccc
Q psy12356 150 ------CLIEGT------------N--CNCQGL-------IV---PESKREERQSSQNRREKEDNRRKPAIRLCDMRAAA 199 (400)
Q Consensus 150 ------~~~~~~------------~--~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~ 199 (400)
.+.... . ...+.+ .+ ..+....+.+++++...++++.||.|++||+.++.
T Consensus 794 ~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 794 PEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL 873 (1249)
T ss_dssp --CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE
T ss_pred cccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 000000 0 000000 00 00000112234566666777789999999998754
Q ss_pred ccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEE-ecCCeEEEEe---------------------------
Q psy12356 200 LCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMIS-RDYLCVKVWD--------------------------- 251 (400)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las-~~D~tIklWD--------------------------- 251 (400)
.. .. +.+|...|.+++|+|+|++|++ +.|++|++||
T Consensus 874 ~~----~~------------~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1249)
T 3sfz_A 874 KV----AD------------CRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937 (1249)
T ss_dssp EE----EE------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEE
T ss_pred ee----ee------------cCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEE
Confidence 32 11 1244455555555555555554 2455555555
Q ss_pred ----------------------------------------------------CCCCCCceeeecCCC-------cCCCCc
Q psy12356 252 ----------------------------------------------------LHMESRPVETYPTHT-------KEENGQ 272 (400)
Q Consensus 252 ----------------------------------------------------~~~~~~~l~~~~~h~-------~~~~g~ 272 (400)
+.++ .++..+.+|. +.++|+
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-~~~~~~~~h~~~v~~l~~s~dg~ 1016 (1249)
T 3sfz_A 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-RVFSSGVGHKKAVRHIQFTADGK 1016 (1249)
T ss_dssp EEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT-SCEEECCCCSSCCCCEEECSSSS
T ss_pred EEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC-ceeeecccCCCceEEEEECCCCC
Confidence 4433 2445556664 457887
Q ss_pred cc-CCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccc---hh----------hcccccce
Q psy12356 273 LR-DPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRG---IF----------ADAHTYHI 338 (400)
Q Consensus 273 ~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~---~~----------~~gh~~~V 338 (400)
++ +++.++++++|++...+.. ...+|...|.++.++|++.+++++... +| ..+|...|
T Consensus 1017 ~l~s~~~dg~i~vwd~~~~~~~--------~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v 1088 (1249)
T 3sfz_A 1017 TLISSSEDSVIQVWNWQTGDYV--------FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTV 1088 (1249)
T ss_dssp CEEEECSSSBEEEEETTTTEEE--------CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCC
T ss_pred EEEEEcCCCEEEEEECCCCceE--------EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcE
Confidence 54 5778899999987543321 224688899999999999887654321 11 14799999
Q ss_pred eEEEEccCCCEEEEe-cCCeEEEEeCccC
Q psy12356 339 SSTSVNSDQETYLSA-DDLRINLWHLEIT 366 (400)
Q Consensus 339 ~~i~fspDg~~las~-~D~~i~lW~~~~~ 366 (400)
.+++|||||++|+++ .|++|++||+...
T Consensus 1089 ~~~~~s~d~~~l~s~s~d~~v~iwd~~~~ 1117 (1249)
T 3sfz_A 1089 LSCAISSDATKFSSTSADKTAKIWSFDLL 1117 (1249)
T ss_dssp CCEEECSSSSSCEEECCSSCCCEECSSSS
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCc
Confidence 999999999999997 6999999998754
No 40
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.5e-30 Score=249.08 Aligned_cols=263 Identities=13% Similarity=0.158 Sum_probs=183.2
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++||+|+.||+|+|||+... ..+....+.+|.. .|.+++|+|+..+.
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~---------~~~~~~~~~~h~~------------~v~~~~~~~~~~~~ 70 (379)
T 3jrp_A 12 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTGHEG------------PVWRVDWAHPKFGT 70 (379)
T ss_dssp CCEEEEEECSSSSEEEEEETTSCEEEEEEETT---------EEEEEEEECCCSS------------CEEEEEECCGGGCS
T ss_pred ccEEEEEEcCCCCEEEEEECCCcEEEEecCCC---------cceeeeEecCCCC------------cEEEEEeCCCCCCC
Confidence 46999999999999999999999999999742 2345667888873 49999999873234
Q ss_pred eEEEeeCCCeEEEEEccCCC------cccccccEEEEEEecCC-CCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN------MEELNEVITAAEFHPID-CNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~------~~~~~~~V~sv~f~p~~-~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
.+++++.|++|+|||+.+++ +..|...|++++|+|+. +.+|++++.|++|++||++.+...... ..... .
T Consensus 71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~-~ 147 (379)
T 3jrp_A 71 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--IIDAH-A 147 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEE--EEECC-T
T ss_pred EEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeE--EecCC-C
Confidence 77788999999999998875 23466789999999972 478999999999999999887321110 00000 0
Q ss_pred cceeceeccCchh---hhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 157 CNCQGLIVPESKR---EERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 157 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
..+..+.+.+... ......+++...++++.||.|++||++.+....... ..+.+|...|.+++|+
T Consensus 148 ~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~------------~~~~~h~~~v~~~~~s 215 (379)
T 3jrp_A 148 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE------------STLEGHSDWVRDVAWS 215 (379)
T ss_dssp TCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEE------------EEECCCSSCEEEEEEC
T ss_pred CceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeE------------EEEecccCcEeEEEEC
Confidence 1122222221000 000001145556666789999999998654211111 1134688899999999
Q ss_pred CC---CcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccc
Q psy12356 234 NS---GRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYH 309 (400)
Q Consensus 234 pd---g~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
|+ +++|+++ .|++|+|||++++..+.... . ..
T Consensus 216 p~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--------------------------------------~-~~----- 251 (379)
T 3jrp_A 216 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT--------------------------------------L-LK----- 251 (379)
T ss_dssp CCCSSSEEEEEEETTSCEEEEEESSTTSCCEEE--------------------------------------E-SS-----
T ss_pred CCCCCCCeEEEEeCCCEEEEEeCCCCCccceee--------------------------------------e-ec-----
Confidence 99 8999875 69999999998753211100 0 00
Q ss_pred eEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 310 INSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 310 i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
..+|...|.+++|+|||++||++ .|++|++|++....
T Consensus 252 ---------------------~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 252 ---------------------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp ---------------------SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred ---------------------cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 02467778999999999999996 79999999998543
No 41
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.98 E-value=3.7e-31 Score=286.46 Aligned_cols=337 Identities=9% Similarity=0.046 Sum_probs=214.2
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCccee--e----eeeeccCcchhhcccccccceeeEEEEE
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNV--Y----STFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~--~----~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
..|++++|+|+|++||+|+.||+|++||+.+.... .+.. . ..+.+|. ..|.+|+|+
T Consensus 99 ~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~------~~~i~~~~~~~~~~~~h~------------~~V~sl~~s 160 (902)
T 2oaj_A 99 GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLS------SFKLDNLQKSSFFPAARL------------SPIVSIQWN 160 (902)
T ss_dssp SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEE------EEEECCHHHHHTCSSSCC------------CCCCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccc------cceeccccccccccccCC------------CCeEEEEEc
Confidence 36899999999999999999999999999854200 0000 0 1233444 569999999
Q ss_pred eccCCceEEEeeCCCeEEEEEccCCCc----cc------------------ccccEEEEEEecCCCCEEEEEeCCCeEEE
Q psy12356 78 RRKNQAHFLLSTNDQSFNIVDIKPTNM----EE------------------LNEVITAAEFHPIDCNLFVYSSSKGTIRL 135 (400)
Q Consensus 78 p~~~~~~~l~ss~D~tI~lWd~~~~~~----~~------------------~~~~V~sv~f~p~~~~~las~s~Dg~i~l 135 (400)
|++. ..+++++.|++| |||+++++. .. |...|++++|+|++ ++||+++.|++|++
T Consensus 161 p~~~-~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg-~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 161 PRDI-GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNS-LHIITIHEDNSLVF 237 (902)
T ss_dssp TTEE-EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTS-SEEEEEETTCCEEE
T ss_pred cCCC-CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCC-CEEEEEECCCeEEE
Confidence 9642 367778899999 999988752 11 23569999999985 79999999999999
Q ss_pred Eeccccccccc--------c-------------cceeccCccc---c-e-eceeccCchh--------------------
Q psy12356 136 CDMRAAALCDR--------H-------------SKCLIEGTNC---N-C-QGLIVPESKR-------------------- 169 (400)
Q Consensus 136 WD~~~~~~~~~--------~-------------~~~~~~~~~~---~-~-~~~~~~~~~~-------------------- 169 (400)
||+++++.+.. | ...+..+.-+ . . ..+.++.+..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99988754321 1 0001000000 0 0 0000000000
Q ss_pred -------------------------hhh---hc----cc------CcceeecCCCCCeEEEeecccccccCccc---ccc
Q psy12356 170 -------------------------EER---QS----SQ------NRREKEDNRRKPAIRLCDMRAAALCDRHS---KFF 208 (400)
Q Consensus 170 -------------------------~~~---~~----~~------~~~~~~~~~~dg~i~lWD~~~~~~~~~~~---~~~ 208 (400)
..+ .. .+ +....+..+.||.|++||+.++..+.... ..+
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l 397 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNL 397 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGG
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcc
Confidence 000 00 00 11122333468999999986653221100 000
Q ss_pred cCCCC----------------------CCCcccccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCc-eeeec-
Q psy12356 209 EEPED----------------------PTNKSFFSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHMESRP-VETYP- 263 (400)
Q Consensus 209 ~~~~~----------------------~~~~~~~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~-l~~~~- 263 (400)
..+.. ......+.+|...+.+|+|+|||++||++ .|++||+||+.++... ...+.
T Consensus 398 ~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~ 477 (902)
T 2oaj_A 398 SWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEV 477 (902)
T ss_dssp TTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEE
T ss_pred cccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEe
Confidence 00000 00111256787888889999999999975 7999999999976210 01121
Q ss_pred --------CCC-------cCCCCccc-CCCCCceeecCccccccee--------------------ecc-----------
Q psy12356 264 --------THT-------KEENGQLR-DPSNITALRVPQIKPIELT--------------------VEA----------- 296 (400)
Q Consensus 264 --------~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~--------------------~~~----------- 296 (400)
+|. +.|+|+++ +++.+++|++|++...+.. ..+
T Consensus 478 ~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (902)
T 2oaj_A 478 NLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRA 557 (902)
T ss_dssp EHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGC
T ss_pred echhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccC
Confidence 563 57899976 4789999999998643210 000
Q ss_pred --------CccceeccccccceEEEEEcCCCcEEeeccc----chh---------------h-cccccceeEEEEc----
Q psy12356 297 --------SPRRIFANAHTYHINSISVNSDQLTVEASPR----GIF---------------A-DAHTYHISSTSVN---- 344 (400)
Q Consensus 297 --------~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~----~~~---------------~-~gh~~~V~~i~fs---- 344 (400)
.+... ..+|...|++++||||| +||++.. ++| . .||+..|++|+||
T Consensus 558 ~~~~~~g~~~~~~-l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~ 635 (902)
T 2oaj_A 558 PTGVRQGFMPSTA-VHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEY 635 (902)
T ss_dssp CTTCSEEEEEEEE-ECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEEC
T ss_pred CCCCCCccceeEE-EEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEec
Confidence 01122 35699999999999999 8875432 111 1 2899999999999
Q ss_pred -cCC---CEEEEe-cCCeEEEEeC
Q psy12356 345 -SDQ---ETYLSA-DDLRINLWHL 363 (400)
Q Consensus 345 -pDg---~~las~-~D~~i~lW~~ 363 (400)
||| ++||++ .|++|++|++
T Consensus 636 ~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 636 GDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEE
T ss_pred CCCCCcceEEEEEecCCcEEEEEE
Confidence 986 899997 7999999998
No 42
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.98 E-value=3.1e-30 Score=244.09 Aligned_cols=297 Identities=13% Similarity=0.124 Sum_probs=181.6
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|+|++||+|+.||+|+|||+.+.. ...++...+.+|.. .|.+++|+|..++.
T Consensus 12 ~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~~~~~~------------~v~~~~~~~~~d~~ 72 (351)
T 3f3f_A 12 DLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDT-------SNWELSDSWRAHDS------------SIVAIDWASPEYGR 72 (351)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEEECSSS-------CCEEEEEEEECCSS------------CEEEEEECCGGGCS
T ss_pred cceeEEEEcCCCCEEEEeeCCCeEEEEECCCCC-------CcceecceeccCCC------------cEEEEEEcCCCCCC
Confidence 469999999999999999999999999998542 22345667788873 49999999942123
Q ss_pred eEEEeeCCCeEEEEEccCCC-------------cccccccEEEEEEecCC-CCEEEEEeCCCeEEEEecccccccccccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-------------MEELNEVITAAEFHPID-CNLFVYSSSKGTIRLCDMRAAALCDRHSK 149 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-------------~~~~~~~V~sv~f~p~~-~~~las~s~Dg~i~lWD~~~~~~~~~~~~ 149 (400)
.+++++.|++|+|||++++. +..|...|.+++|+|+. +++|++++.|++|++||++++........
T Consensus 73 ~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 73 IIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp EEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred EEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccc
Confidence 67778999999999998763 23456789999999972 37899999999999999998854322110
Q ss_pred --eeccCc------ccceeceeccCchhhhhhcccC---cceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcc
Q psy12356 150 --CLIEGT------NCNCQGLIVPESKREERQSSQN---RREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKS 218 (400)
Q Consensus 150 --~~~~~~------~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 218 (400)
...... ...+..+. ..|+ ....+.++.++.+.+|+...+... .. .
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~----------~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~------------~ 208 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLS----------WCPSRFSPEKLAVSALEQAIIYQRGKDGKLH--VA------------A 208 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEE----------ECCCSSSCCEEEEEETTEEEEEEECTTSCEE--EE------------E
T ss_pred cccccccccccCCcccceeEEE----------eccCCCCCcEEEEecCCCcEEEEccCCCcee--ee------------e
Confidence 000000 00011111 1222 334555567889977776654321 00 1
Q ss_pred cccccccCeEEEEECCCC----cEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCccccccee
Q psy12356 219 FFSEIISSISDVKISNSG----RYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELT 293 (400)
Q Consensus 219 ~~~~h~~~V~~v~fSpdg----~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~ 293 (400)
.+.+|...|.+++|+|++ ++|+++ .|++|++||++.+..+. ....+.. .... ........
T Consensus 209 ~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~---~~~~----------~~~~~~~~- 273 (351)
T 3f3f_A 209 KLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL-ASEESLT---NSNM----------FDNSADVD- 273 (351)
T ss_dssp ECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-------------------------------------
T ss_pred ecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc-ccCCccc---ceec----------cCCCcccc-
Confidence 134688899999999998 788864 69999999999764322 1111100 0000 00000000
Q ss_pred eccCccceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 294 VEASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 294 ~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
..+... ..+. ....+.+....+ ...... ..+|...|++++|+|||++||++ .|++|+||++...+
T Consensus 274 ~~~~~~---~~~~--~~~~~~~~~~~~---~~~~~~-~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 274 MDAQGR---SDSN--TEEKAELQSNLQ---VELLSE-HDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ----------------------CCSEE---EEEEEE-ECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred cccccc---cccc--cceeeeeccccc---ccEEEE-EecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 000000 0000 000000100000 000011 14899999999999999999997 69999999998755
No 43
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.97 E-value=9.7e-31 Score=250.21 Aligned_cols=295 Identities=13% Similarity=0.132 Sum_probs=194.2
Q ss_pred eeEEEEEECCCCC-eEEEecC---CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEec
Q psy12356 4 YMREASQRFSDGE-LLATGDK---GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR 79 (400)
Q Consensus 4 ~~v~~v~fspdG~-~Las~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~ 79 (400)
..|.+++|+|+|. ++|+|+. ||+|+|||+.+++ ..... ..+|. ..|.+++|+|+
T Consensus 19 ~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~---------~~~~~-~~~~~------------~~v~~~~~~~~ 76 (357)
T 3i2n_A 19 YTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGD---------LKLLR-EIEKA------------KPIKCGTFGAT 76 (357)
T ss_dssp SCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSS---------EEEEE-EEEES------------SCEEEEECTTC
T ss_pred CceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCc---------cccee-eeccc------------CcEEEEEEcCC
Confidence 4799999999996 5567766 9999999998642 11111 22554 45999999998
Q ss_pred cC-CceEEEeeCCCeEEEEEccCCC-----cccccccEEEEE------EecCCCCEEEEEeCCCeEEEEeccccc-cccc
Q psy12356 80 KN-QAHFLLSTNDQSFNIVDIKPTN-----MEELNEVITAAE------FHPIDCNLFVYSSSKGTIRLCDMRAAA-LCDR 146 (400)
Q Consensus 80 ~~-~~~~l~ss~D~tI~lWd~~~~~-----~~~~~~~V~sv~------f~p~~~~~las~s~Dg~i~lWD~~~~~-~~~~ 146 (400)
+. +..+++++.|++|++||+.+++ +..|...|++++ |+|+ +++|++++.|++|++||++++. ....
T Consensus 77 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~-~~~l~~~~~d~~i~vwd~~~~~~~~~~ 155 (357)
T 3i2n_A 77 SLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEG-APEIVTGSRDGTVKVWDPRQKDDPVAN 155 (357)
T ss_dssp CTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-C-CCEEEEEETTSCEEEECTTSCSSCSEE
T ss_pred CCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCC-ccEEEEEeCCCeEEEEeCCCCCCccee
Confidence 41 2367778899999999998775 245778899995 4676 4789999999999999999874 2111
Q ss_pred ccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccC
Q psy12356 147 HSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISS 226 (400)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 226 (400)
... ........++.+.+. ....+++...++++.||.|++||++++.... ...|...
T Consensus 156 ~~~-~~~~~~~~v~~~~~~------~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-----------------~~~~~~~ 211 (357)
T 3i2n_A 156 MEP-VQGENKRDCWTVAFG------NAYNQEERVVCAGYDNGDIKLFDLRNMALRW-----------------ETNIKNG 211 (357)
T ss_dssp ECC-CTTSCCCCEEEEEEE------CCCC-CCCEEEEEETTSEEEEEETTTTEEEE-----------------EEECSSC
T ss_pred ccc-cCCCCCCceEEEEEE------eccCCCCCEEEEEccCCeEEEEECccCceee-----------------ecCCCCc
Confidence 100 000000112221110 0122555566666789999999998765310 1256678
Q ss_pred eEEEEECC---CCcEEEE-ecCCeEEEEeCCCCCCceeeec-----CCC-------cCCCCc-c-cCCCCCceeecCccc
Q psy12356 227 ISDVKISN---SGRYMIS-RDYLCVKVWDLHMESRPVETYP-----THT-------KEENGQ-L-RDPSNITALRVPQIK 288 (400)
Q Consensus 227 V~~v~fSp---dg~~las-~~D~tIklWD~~~~~~~l~~~~-----~h~-------~~~~g~-~-~~~~~~~~i~l~~~~ 288 (400)
|.+++|+| ++++|++ +.|+.|++||++++. ++..+. +|. +.++|+ + ++++.++.+++|++.
T Consensus 212 v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~ 290 (357)
T 3i2n_A 212 VCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQH-PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYE 290 (357)
T ss_dssp EEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEE-TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEE
T ss_pred eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCC-cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecC
Confidence 99999999 8999886 468999999999753 444444 674 457777 4 456788899998874
Q ss_pred ccceeeccCccceeccccccceEEEEEcCCCcEEeecc--cch-hhcccccceeEEEEccCCCEEE-Ee-cCCeEEEEeC
Q psy12356 289 PIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASP--RGI-FADAHTYHISSTSVNSDQETYL-SA-DDLRINLWHL 363 (400)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~--~~~-~~~gh~~~V~~i~fspDg~~la-s~-~D~~i~lW~~ 363 (400)
...... .+.++|......+ ... ...+|...|.+++|+|||++|| |+ .|++|+||++
T Consensus 291 ~~~~~~-------------------~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~ 351 (357)
T 3i2n_A 291 YPIQRS-------------------KKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIV 351 (357)
T ss_dssp CCSCC---------------------CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEE
T ss_pred CCcccc-------------------cccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEEC
Confidence 322110 0001110000000 000 0147999999999999999998 66 6999999998
Q ss_pred cc
Q psy12356 364 EI 365 (400)
Q Consensus 364 ~~ 365 (400)
..
T Consensus 352 ~~ 353 (357)
T 3i2n_A 352 TK 353 (357)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 44
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=6.9e-30 Score=271.83 Aligned_cols=298 Identities=12% Similarity=0.115 Sum_probs=212.2
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|||||++||+|+.||+|+|||+.++ +.+..+.+|. ..|.+++|+|+++
T Consensus 14 ~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~-----------~~~~~~~~~~------------~~v~~~~~s~~~~-- 68 (814)
T 3mkq_A 14 DRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQ-----------VEVRSIQVTE------------TPVRAGKFIARKN-- 68 (814)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTT-----------EEEEEEECCS------------SCEEEEEEEGGGT--
T ss_pred CceEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------ceEEEEecCC------------CcEEEEEEeCCCC--
Confidence 46899999999999999999999999998753 3456778887 3499999999874
Q ss_pred eEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc-cccccceeccCcccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL-CDRHSKCLIEGTNCN 158 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~-~~~~~~~~~~~~~~~ 158 (400)
.+++++.|++|+|||+.+++. ..|...|++++|+|++ ..|++++.||+|++||++++.. ... +... ...
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~vw~~~~~~~~~~~----~~~~-~~~ 142 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK-PYVLSGSDDLTVKLWNWENNWALEQT----FEGH-EHF 142 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSS-SEEEEEETTSEEEEEEGGGTSEEEEE----EECC-SSC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCC-CEEEEEcCCCEEEEEECCCCceEEEE----EcCC-CCc
Confidence 777888999999999998873 4577889999999985 7899999999999999988621 111 0000 011
Q ss_pred eeceeccCchhhhhhccc-CcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC--C
Q psy12356 159 CQGLIVPESKREERQSSQ-NRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN--S 235 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp--d 235 (400)
+..+. .+| ++...++++.||+|++||++.+... ..+ ...|...+..++|+| +
T Consensus 143 v~~~~----------~~p~~~~~l~~~~~dg~v~vwd~~~~~~~----~~~-----------~~~~~~~v~~~~~~~~~~ 197 (814)
T 3mkq_A 143 VMCVA----------FNPKDPSTFASGCLDRTVKVWSLGQSTPN----FTL-----------TTGQERGVNYVDYYPLPD 197 (814)
T ss_dssp EEEEE----------EETTEEEEEEEEETTSEEEEEETTCSSCS----EEE-----------ECCCTTCCCEEEECCSTT
T ss_pred EEEEE----------EEcCCCCEEEEEeCCCeEEEEECCCCcce----eEE-----------ecCCCCCEEEEEEEECCC
Confidence 12222 234 4555666678999999999765321 111 113346799999999 9
Q ss_pred CcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccccceeeccCccceecccc
Q psy12356 236 GRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAH 306 (400)
Q Consensus 236 g~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 306 (400)
+++|+++ .|++|++||++++ .++..+.+|. +.++|+++ +++.++++++|++...... ..+ ..|
T Consensus 198 ~~~l~~~~~dg~i~~~d~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~------~~~-~~~ 269 (814)
T 3mkq_A 198 KPYMITASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVE------KTL-NVG 269 (814)
T ss_dssp CCEEEEECTTSEEEEEETTTT-EEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEE------EEE-CCS
T ss_pred CCEEEEEeCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE------EEe-ecC
Confidence 9999875 6899999999986 4678888884 46888754 5678899999987543221 111 345
Q ss_pred ccceEEEEEcCCCc--EEeecccc----------------------hh--------------------------------
Q psy12356 307 TYHINSISVNSDQL--TVEASPRG----------------------IF-------------------------------- 330 (400)
Q Consensus 307 ~~~i~~i~~s~dg~--~~~~~~~~----------------------~~-------------------------------- 330 (400)
...+++++|+|+|+ +++..... .+
T Consensus 270 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (814)
T 3mkq_A 270 LERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQT 349 (814)
T ss_dssp SSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCC
T ss_pred CCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeee
Confidence 55677777777775 23321100 00
Q ss_pred --hcccccceeEEEEccCCCEEEEecCCeEEEEeCcc
Q psy12356 331 --ADAHTYHISSTSVNSDQETYLSADDLRINLWHLEI 365 (400)
Q Consensus 331 --~~gh~~~V~~i~fspDg~~las~~D~~i~lW~~~~ 365 (400)
...|...|.+++|||||++||++.|+.+++|++..
T Consensus 350 ~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~ 386 (814)
T 3mkq_A 350 KELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALA 386 (814)
T ss_dssp EEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTT
T ss_pred ecCCCCccCCceeEECCCCCEEEEecCCEEEEEECcc
Confidence 01244567788888888888887788888888653
No 45
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.97 E-value=5.4e-30 Score=245.55 Aligned_cols=301 Identities=14% Similarity=0.142 Sum_probs=185.3
Q ss_pred eeEEEEEECCC----CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEec
Q psy12356 4 YMREASQRFSD----GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR 79 (400)
Q Consensus 4 ~~v~~v~fspd----G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~ 79 (400)
..|++++|+|+ ..++++++.++.|+|||..+++ .++.++.|... .+.+.|.+++|+|+
T Consensus 19 ~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~-----------~~~~~~~~~~~-------~~~~~v~~~~~~~~ 80 (366)
T 3k26_A 19 QPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQG-----------EIRLLQSYVDA-------DADENFYTCAWTYD 80 (366)
T ss_dssp SCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGG-----------CEEEEEEEECS-------CTTCCEEEEEEEEC
T ss_pred CceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCc-----------EEEeeeecccc-------CCCCcEEEEEeccC
Confidence 47999999984 3445555557799999997532 23445444311 12356999999998
Q ss_pred cC--CceEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceecc
Q psy12356 80 KN--QAHFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIE 153 (400)
Q Consensus 80 ~~--~~~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~ 153 (400)
+. +..+++++.|++|+|||+.+++. ..|...|++++|+|+++++|++++.|++|++||++++........ ...
T Consensus 81 ~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~ 159 (366)
T 3k26_A 81 SNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGG-VEG 159 (366)
T ss_dssp TTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECS-TTS
T ss_pred CCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecc-ccc
Confidence 53 23566788999999999988773 457788999999994468999999999999999998743221100 000
Q ss_pred CcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccc-cCCCCC-----------CCccccc
Q psy12356 154 GTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFF-EEPEDP-----------TNKSFFS 221 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~-~~~~~~-----------~~~~~~~ 221 (400)
....+..+.+ .+++...++++.||.|++||++++.......... ..+... .......
T Consensus 160 -~~~~v~~~~~----------~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T 3k26_A 160 -HRDEVLSADY----------DLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRD 228 (366)
T ss_dssp -CSSCEEEEEE----------CTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECS
T ss_pred -ccCceeEEEE----------CCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCcccccc
Confidence 0112222222 3555556666789999999998764321000000 000000 0001123
Q ss_pred ccccCeEEEEECCCCcEEEE-ecCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccc
Q psy12356 222 EIISSISDVKISNSGRYMIS-RDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRR 300 (400)
Q Consensus 222 ~h~~~V~~v~fSpdg~~las-~~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~ 300 (400)
+|...|.+++|+ +++|++ +.|+.|++||+++....+..+..+.. ....+ .
T Consensus 229 ~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~----------~~~~~-----------------~ 279 (366)
T 3k26_A 229 IHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSES----------NVTIL-----------------G 279 (366)
T ss_dssp SCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCC----------CEEEE-----------------E
T ss_pred CCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCc----------chhee-----------------c
Confidence 488899999999 668876 46899999999986543222211100 00000 0
Q ss_pred eeccccccceEEEEEcCC--CcEEeecccc----h--------------hhccc--ccceeEEEEccCCCEEEEe-cCCe
Q psy12356 301 IFANAHTYHINSISVNSD--QLTVEASPRG----I--------------FADAH--TYHISSTSVNSDQETYLSA-DDLR 357 (400)
Q Consensus 301 ~~~~~~~~~i~~i~~s~d--g~~~~~~~~~----~--------------~~~gh--~~~V~~i~fspDg~~las~-~D~~ 357 (400)
. ..+|...|+.++|+|| |+++++.... + ...+| ...|++++|+|||++||++ .|++
T Consensus 280 ~-~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~ 358 (366)
T 3k26_A 280 R-FDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDAS 358 (366)
T ss_dssp E-EECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred c-ccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCE
Confidence 0 1223334444444444 4444422110 0 01245 7899999999999999997 7999
Q ss_pred EEEEeCc
Q psy12356 358 INLWHLE 364 (400)
Q Consensus 358 i~lW~~~ 364 (400)
|++||+.
T Consensus 359 i~iwd~~ 365 (366)
T 3k26_A 359 IWRWDRL 365 (366)
T ss_dssp EEEEEC-
T ss_pred EEEEEec
Confidence 9999985
No 46
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.97 E-value=8.7e-30 Score=247.97 Aligned_cols=288 Identities=11% Similarity=0.109 Sum_probs=197.7
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEec----
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR---- 79 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~---- 79 (400)
..|++|+|+| ++||+|+.||+|+|||+.+.... ...+....+.+|. ..|.+++|+|+
T Consensus 17 ~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~~h~------------~~v~~~~~~~~~~~~ 77 (397)
T 1sq9_A 17 ADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNE-----NPKDKSYSHFVHK------------SGLHHVDVLQAIERD 77 (397)
T ss_dssp SCEEEEEECS--SEEEEEETTSEEEEEESBCCTTC-----CGGGGEEEEECCT------------TCEEEEEEEEEEETT
T ss_pred cCeEEEEecC--CeEEEEcCCCEEEEEECCCcccc-----cCCCcceEEecCC------------CcEEEEEEecccccC
Confidence 4689999999 89999999999999999864311 1123455677786 35999999998
Q ss_pred c---CCceEEEeeCCCeEEEEEccCCC------c---ccc-----cccEEEEEEe----cCCCCE-EEEEeCCCeEEEEe
Q psy12356 80 K---NQAHFLLSTNDQSFNIVDIKPTN------M---EEL-----NEVITAAEFH----PIDCNL-FVYSSSKGTIRLCD 137 (400)
Q Consensus 80 ~---~~~~~l~ss~D~tI~lWd~~~~~------~---~~~-----~~~V~sv~f~----p~~~~~-las~s~Dg~i~lWD 137 (400)
+ . .+++++.|++|++||+.+++ . ..+ ...|.+++|+ |++ .+ |++++.|+.|++||
T Consensus 78 g~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~l~~~~~dg~i~iwd 154 (397)
T 1sq9_A 78 AFELC--LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLL-SHRLVATDVKGTTYIWK 154 (397)
T ss_dssp TEEEE--EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC-----CEEEEEEETTSCEEEEE
T ss_pred Ccccc--EEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCC-ceEEEEEeCCCcEEEEe
Confidence 4 3 67778999999999998766 2 234 4789999999 975 67 99999999999999
Q ss_pred ccc------ccccccccc-eecc------CcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcc
Q psy12356 138 MRA------AALCDRHSK-CLIE------GTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRH 204 (400)
Q Consensus 138 ~~~------~~~~~~~~~-~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~ 204 (400)
+++ +....-... .+.. .....+..+ ...+++ ..++++.||.|++||++++...
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~----------~~~~~~-~l~~~~~dg~i~i~d~~~~~~~--- 220 (397)
T 1sq9_A 155 FHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSV----------DISERG-LIATGFNNGTVQISELSTLRPL--- 220 (397)
T ss_dssp EESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEE----------EECTTS-EEEEECTTSEEEEEETTTTEEE---
T ss_pred CCccccccccceeeccCcceeeeeeccccCCCCCceEE----------EECCCc-eEEEEeCCCcEEEEECCCCcee---
Confidence 998 533220000 0000 000111122 234566 6777789999999999875432
Q ss_pred cccccCCCCCCCccccccc---ccCeEEEEECCCCcEEEEe-cC---CeEEEEeCCCCCCceeeecCCCcCCCCcccCCC
Q psy12356 205 SKFFEEPEDPTNKSFFSEI---ISSISDVKISNSGRYMISR-DY---LCVKVWDLHMESRPVETYPTHTKEENGQLRDPS 277 (400)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~h---~~~V~~v~fSpdg~~las~-~D---~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~ 277 (400)
..+.. ..+| ...|.+++|+|++++|+++ .| +.|++||++++ .++..+.+... +.
T Consensus 221 -~~~~~---------~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~-~~~~~~~~~~~-~~------- 281 (397)
T 1sq9_A 221 -YNFES---------QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG-ERIGSLSVPTH-SS------- 281 (397)
T ss_dssp -EEEEC---------CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-CEEEEECBC------------
T ss_pred -EEEec---------cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-cccceeccCcc-cc-------
Confidence 22211 0126 7889999999999999864 67 99999999976 45666643210 00
Q ss_pred CCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccc----hh----------hc------cc---
Q psy12356 278 NITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRG----IF----------AD------AH--- 334 (400)
Q Consensus 278 ~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~----~~----------~~------gh--- 334 (400)
.. . .....|...|.+++|+|||+++++.+.. +| .. +|
T Consensus 282 ---~~---------------~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 341 (397)
T 1sq9_A 282 ---QA---------------S--LGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEED 341 (397)
T ss_dssp ------------------------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGG
T ss_pred ---cc---------------c--ccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhh
Confidence 00 0 0012377778899999999888754321 11 13 66
Q ss_pred ------------ccceeEEEEccCC----------CEEEEe-cCCeEEEEeCccC
Q psy12356 335 ------------TYHISSTSVNSDQ----------ETYLSA-DDLRINLWHLEIT 366 (400)
Q Consensus 335 ------------~~~V~~i~fspDg----------~~las~-~D~~i~lW~~~~~ 366 (400)
...|++++|+||| ++|+++ .|++|++|+++++
T Consensus 342 ~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 342 ILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG 396 (397)
T ss_dssp CCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred hhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence 8999999999999 799997 6999999998753
No 47
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.97 E-value=4.6e-30 Score=253.96 Aligned_cols=268 Identities=14% Similarity=0.183 Sum_probs=183.6
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
++.|+||++ ++||+|. |++|+|||..+++ +.+.+..|.. ...|++|+|+|+++ .+
T Consensus 108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~-----------~~~~~~~~~~----------~~~V~sv~fspdg~--~l 162 (420)
T 4gga_A 108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGD-----------ILQLLQMEQP----------GEYISSVAWIKEGN--YL 162 (420)
T ss_dssp CBCEEECTT-SEEEEEE-TTEEEEEETTTCC-----------EEEEEECCST----------TCCEEEEEECTTSS--EE
T ss_pred ceeEEECCC-CEEEEEe-CCEEEEEECCCCC-----------EEEEEEecCC----------CCcEEEEEECCCCC--EE
Confidence 467999986 5888876 9999999998643 3344443321 14599999999874 77
Q ss_pred EEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc--cce
Q psy12356 86 LLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN--CNC 159 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~--~~~ 159 (400)
++++.|++|+|||+++++ +..|...+.++++++ .++++++.|+++++||.+..... +..+.. ...
T Consensus 163 asgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~------~~~~~~h~~~~ 233 (420)
T 4gga_A 163 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHH------VATLSGHSQEV 233 (420)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCE------EEEEECCSSCE
T ss_pred EEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCC---CEEEEEeCCCceeEeeeccccee------eEEecccccce
Confidence 788999999999999886 345777888888765 58999999999999998876321 111100 011
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCc-E
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGR-Y 238 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~-~ 238 (400)
..+ ...+++...++++.|+.+++||.+.+........ ....|...|.+++|+|++. +
T Consensus 234 ~~~----------~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~------------~~~~~~~~V~~~~~~p~~~~~ 291 (420)
T 4gga_A 234 CGL----------RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ------------TFTQHQGAVKAVAWCPWQSNV 291 (420)
T ss_dssp EEE----------EECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE------------EECCCSSCEEEEEECTTCTTE
T ss_pred eee----------eecCCCCeeeeeeccccceEEeeccccccceeee------------eecccCCceeeeeeCCCcccE
Confidence 111 2235555666677899999999987653221111 1236778999999999765 5
Q ss_pred EEE--e-cCCeEEEEeCCCCCCceeeecCCC------cCCCCcc-cC--CCCCceeecCcccccceeeccCccceecccc
Q psy12356 239 MIS--R-DYLCVKVWDLHMESRPVETYPTHT------KEENGQL-RD--PSNITALRVPQIKPIELTVEASPRRIFANAH 306 (400)
Q Consensus 239 las--~-~D~tIklWD~~~~~~~l~~~~~h~------~~~~g~~-~~--~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 306 (400)
+++ + .|++|+|||+.++. ++..+..|. +.++++. ++ +..+++|++|++..
T Consensus 292 la~~~gs~D~~I~iwd~~t~~-~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~----------------- 353 (420)
T 4gga_A 292 LATGGGTSDRHIRIWNVCSGA-CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPT----------------- 353 (420)
T ss_dssp EEEEECTTTCEEEEEETTTTE-EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTT-----------------
T ss_pred EEEEeecCCCEEEEEeCCccc-cceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCC-----------------
Confidence 553 2 48999999999864 666666553 2233332 11 22445555554321
Q ss_pred ccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCcc
Q psy12356 307 TYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEI 365 (400)
Q Consensus 307 ~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~ 365 (400)
++.+. .+ .||.+.|++|+|||||++|||+ .|++|||||+..
T Consensus 354 ------------~~~v~-----~l-~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 354 ------------MAKVA-----EL-KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp ------------CCEEE-----EE-CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred ------------CcEEE-----EE-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 11111 11 4899999999999999999997 799999999864
No 48
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=99.97 E-value=8.6e-31 Score=258.91 Aligned_cols=236 Identities=12% Similarity=0.153 Sum_probs=174.4
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|+|++||+|+.|++|+|||+.+. ++++++.+|.. .|.+++|+|+++
T Consensus 151 ~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~-----------~~~~~~~~h~~------------~V~~v~~~p~~~-- 205 (410)
T 1vyh_C 151 DSVQDISFDHSGKLLASCSADMTIKLWDFQGF-----------ECIRTMHGHDH------------NVSSVSIMPNGD-- 205 (410)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCCCEEETTSS-----------CEEECCCCCSS------------CEEEEEECSSSS--
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC-----------ceeEEEcCCCC------------CEEEEEEeCCCC--
Confidence 46899999999999999999999999999753 35677888873 499999999874
Q ss_pred eEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+++++.|++|++||+.++.+ ..|...|.+++|+|++ .+|++++.|++|++||++++........ . ...+
T Consensus 206 ~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g-~~l~s~s~D~~v~vwd~~~~~~~~~~~~----h-~~~v 279 (410)
T 1vyh_C 206 HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDG-TLIASCSNDQTVRVWVVATKECKAELRE----H-RHVV 279 (410)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEECC----C-SSCE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCC-CEEEEEcCCCeEEEEECCCCceeeEecC----C-CceE
Confidence 778889999999999998873 4577889999999985 7999999999999999988743221100 0 0111
Q ss_pred eceeccCchhh-hh---------hcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEE
Q psy12356 160 QGLIVPESKRE-ER---------QSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISD 229 (400)
Q Consensus 160 ~~~~~~~~~~~-~~---------~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 229 (400)
..+.+++.... .+ .....+...++++.|++|++||++++... .. +.+|.+.|.+
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~----~~------------~~~h~~~v~~ 343 (410)
T 1vyh_C 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL----MT------------LVGHDNWVRG 343 (410)
T ss_dssp EEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE----EE------------EECCSSCEEE
T ss_pred EEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE----EE------------EECCCCcEEE
Confidence 12222211100 00 00112345667778999999999976532 11 3478889999
Q ss_pred EEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcc
Q psy12356 230 VKISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQI 287 (400)
Q Consensus 230 v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~ 287 (400)
|+|+|+|++|+++ .|++|+|||++++ .+++.+.+|. +.++++++ +++.|++|++|++
T Consensus 344 v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 344 VLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTS-CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 9999999999974 6899999999876 4788899885 45777654 5677888888753
No 49
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=99.97 E-value=3.4e-30 Score=274.15 Aligned_cols=303 Identities=12% Similarity=0.112 Sum_probs=203.6
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|||++||+|+.||+|+|||+.+++ .+..+.+|. ..|.+++|+|+++
T Consensus 56 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~-----------~~~~~~~~~------------~~v~~~~~s~~~~-- 110 (814)
T 3mkq_A 56 TPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGE-----------KVVDFEAHP------------DYIRSIAVHPTKP-- 110 (814)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEETTTCC-----------EEEEEECCS------------SCEEEEEECSSSS--
T ss_pred CcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-----------EEEEEecCC------------CCEEEEEEeCCCC--
Confidence 468999999999999999999999999998642 355777887 3499999999875
Q ss_pred eEEEeeCCCeEEEEEccCCC-----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
.+++++.|++|++||++++. +..|...|.+++|+|++++.|++++.||+|++||++++...... .......
T Consensus 111 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~----~~~~~~~ 186 (814)
T 3mkq_A 111 YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL----TTGQERG 186 (814)
T ss_dssp EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEE----ECCCTTC
T ss_pred EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEE----ecCCCCC
Confidence 67788999999999998763 24567889999999944579999999999999999877432110 0000011
Q ss_pred eeceeccCchhhhhhccc--CcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC
Q psy12356 159 CQGLIVPESKREERQSSQ--NRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG 236 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg 236 (400)
+..+. ..+ ++...++++.||.|++||++++... .. +.+|...|.+++|+|+|
T Consensus 187 v~~~~----------~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~----~~------------~~~~~~~v~~~~~~~~~ 240 (814)
T 3mkq_A 187 VNYVD----------YYPLPDKPYMITASDDLTIKIWDYQTKSCV----AT------------LEGHMSNVSFAVFHPTL 240 (814)
T ss_dssp CCEEE----------ECCSTTCCEEEEECTTSEEEEEETTTTEEE----EE------------EECCSSCEEEEEECSSS
T ss_pred EEEEE----------EEECCCCCEEEEEeCCCEEEEEECCCCcEE----EE------------EcCCCCCEEEEEEcCCC
Confidence 11111 223 5556667778999999999876432 11 34677899999999999
Q ss_pred cEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCc--ccCCCCCceeecCcccccceee-ccCccc-----
Q psy12356 237 RYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQ--LRDPSNITALRVPQIKPIELTV-EASPRR----- 300 (400)
Q Consensus 237 ~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~--~~~~~~~~~i~l~~~~~~~~~~-~~~~~~----- 300 (400)
++|+++ .|++|++||+.++ .++..+..|. +.++|. +++.+.+..+.+|++....... ....++
T Consensus 241 ~~l~~~~~dg~v~vwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 319 (814)
T 3mkq_A 241 PIIISGSEDGTLKIWNSSTY-KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSG 319 (814)
T ss_dssp SEEEEEETTSCEEEEETTTC-SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEEC
T ss_pred CEEEEEeCCCeEEEEECCCC-cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEEC
Confidence 999875 6899999999986 4677777663 356765 2333333344444332111000 000000
Q ss_pred ------------------------------eeccccccceEEEEEcCCCcEEeecccch--------hhcccccceeEEE
Q psy12356 301 ------------------------------IFANAHTYHINSISVNSDQLTVEASPRGI--------FADAHTYHISSTS 342 (400)
Q Consensus 301 ------------------------------~~~~~~~~~i~~i~~s~dg~~~~~~~~~~--------~~~gh~~~V~~i~ 342 (400)
.....+...+.+++|+|||++++...... +...|.+.|.+++
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~~~~i~~~~ 399 (814)
T 3mkq_A 320 GKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKAFGKCQDFV 399 (814)
T ss_dssp CTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEEEEECSEEE
T ss_pred cccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccCCCceEEEE
Confidence 00123445577888888888776533211 1124455666777
Q ss_pred EccCCCEEEEe-cCCeEEEEe
Q psy12356 343 VNSDQETYLSA-DDLRINLWH 362 (400)
Q Consensus 343 fspDg~~las~-~D~~i~lW~ 362 (400)
|||||++||++ .|++|++|+
T Consensus 400 ~spdg~~la~~~~~g~v~l~~ 420 (814)
T 3mkq_A 400 WGPDSNSYALIDETGQIKYYK 420 (814)
T ss_dssp ECTTSSCEEEECTTCCEEEEE
T ss_pred EeCCCCeEEEEeCCCcEEEEE
Confidence 77777777665 466677775
No 50
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=9.6e-31 Score=259.02 Aligned_cols=302 Identities=10% Similarity=0.103 Sum_probs=197.2
Q ss_pred eeEEEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
..|++++|+| ||++||+|+.||+|+|||+.+.... ...+....+ +|. ..|.+++|+|++.
T Consensus 64 ~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-----~~~~~~~~~-~h~------------~~v~~~~~~~~~~- 124 (437)
T 3gre_A 64 NSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-----EVYSSSLTY-DCS------------STVTQITMIPNFD- 124 (437)
T ss_dssp SCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-----CCCSCSEEE-ECS------------SCEEEEEECTTSS-
T ss_pred CceEEEEECCCCCCEEEEecCCceEEEeECcccccC-----cccceeeec-cCC------------CCEEEEEEeCCCC-
Confidence 5799999999 9999999999999999998641100 011111122 354 4599999999764
Q ss_pred ceEEEeeCCCeEEEEEcc---CCCccc----------------ccccEEEEE--EecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 83 AHFLLSTNDQSFNIVDIK---PTNMEE----------------LNEVITAAE--FHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~---~~~~~~----------------~~~~V~sv~--f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+++++.|++|+|||++ +++... +...+.++. ++|+ +++|++++.|++|++||++++
T Consensus 125 -~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~ 202 (437)
T 3gre_A 125 -AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE-KSLLVALTNLSRVIIFDIRTL 202 (437)
T ss_dssp -EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS-CEEEEEEETTSEEEEEETTTC
T ss_pred -EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC-CCEEEEEeCCCeEEEEeCCCC
Confidence 77788999999999995 443211 122344444 4455 479999999999999999988
Q ss_pred cccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccc
Q psy12356 142 ALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS 221 (400)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (400)
.......... -...+..+. ..+++...++++.||+|++||++.+... +.+. .
T Consensus 203 ~~~~~~~~~~---h~~~v~~~~----------~s~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~-----------~ 254 (437)
T 3gre_A 203 ERLQIIENSP---RHGAVSSIC----------IDEECCVLILGTTRGIIDIWDIRFNVLI----RSWS-----------F 254 (437)
T ss_dssp CEEEEEECCG---GGCCEEEEE----------ECTTSCEEEEEETTSCEEEEETTTTEEE----EEEB-----------C
T ss_pred eeeEEEccCC---CCCceEEEE----------ECCCCCEEEEEcCCCeEEEEEcCCccEE----EEEe-----------c
Confidence 5432111000 001122222 2356666777788999999999975432 1111 1
Q ss_pred ccccCeEEEEE----CCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCC-------------------
Q psy12356 222 EIISSISDVKI----SNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEEN------------------- 270 (400)
Q Consensus 222 ~h~~~V~~v~f----Spdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~------------------- 270 (400)
+|...|.+++| +|++++|+++ .|++|+|||++++ .+++.+.+|. +.++
T Consensus 255 ~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~ 333 (437)
T 3gre_A 255 GDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG-HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALS 333 (437)
T ss_dssp TTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT-EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGC
T ss_pred CCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC-cEEEEEEcCCCCCccceecccccccccceecccccCCceE
Confidence 45568999955 5578899875 6899999999986 4677777663 2222
Q ss_pred ------Ccc-cCCCCCceeecCcccccceeeccCccceeccc---cccceEEEEEcCCCcEEeecccc------hhhccc
Q psy12356 271 ------GQL-RDPSNITALRVPQIKPIELTVEASPRRIFANA---HTYHINSISVNSDQLTVEASPRG------IFADAH 334 (400)
Q Consensus 271 ------g~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~---~~~~i~~i~~s~dg~~~~~~~~~------~~~~gh 334 (400)
+++ ++++.++.|++|++...+.. +.+ .+ ....+....++++..++...... ....+|
T Consensus 334 ~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 406 (437)
T 3gre_A 334 TISVSNDKILLTDEATSSIVMFSLNELSSS------KAV-ISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYH 406 (437)
T ss_dssp CEEEETTEEEEEEGGGTEEEEEETTCGGGC------EEE-ECC--CCCEEEEEEEETTEEEEEEECC-------------
T ss_pred EEEECCceEEEecCCCCeEEEEECCCcccc------eEE-ecccccCceEEEEEeecceEEEEEecccccccccCccccc
Confidence 243 45678899999987644321 111 12 23345666777766554432110 011369
Q ss_pred ccceeEEEEccC--CCEEEEe-cCCeEEEEe
Q psy12356 335 TYHISSTSVNSD--QETYLSA-DDLRINLWH 362 (400)
Q Consensus 335 ~~~V~~i~fspD--g~~las~-~D~~i~lW~ 362 (400)
...|++|+|+++ +.+|+|+ .||+|+||+
T Consensus 407 ~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 407 HDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 999999999999 7799997 699999995
No 51
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.97 E-value=1e-29 Score=247.19 Aligned_cols=308 Identities=12% Similarity=0.172 Sum_probs=188.2
Q ss_pred eeEEEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCccee--eeee-----eccCcchhhcccccccceeeEEE
Q psy12356 4 YMREASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNV--YSTF-----QSHEPEFDYLKSLEIEEKINKIR 75 (400)
Q Consensus 4 ~~v~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~--~~~~-----~~h~~~~~~~~~~~~~~~V~~v~ 75 (400)
..|++++|+| +|++||+|+.||+|+|||+.+..... .... .... .+|. ..|.+++
T Consensus 44 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~------------~~v~~~~ 106 (408)
T 4a11_B 44 GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS-----YYTCKAVCSIGRDHPDVHR------------YSVETVQ 106 (408)
T ss_dssp SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS-----CEEECEEEEECTTCTTCCS------------SCEEEEE
T ss_pred CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc-----eEeccccccccccccccCC------------CcEEEEE
Confidence 5799999999 99999999999999999998653210 0000 0000 1243 5699999
Q ss_pred EEeccCCceEEEeeCCCeEEEEEccCCCc---ccccccEEEEEEecCC--CCEEEEEeCCCeEEEEecccccccccccce
Q psy12356 76 WLRRKNQAHFLLSTNDQSFNIVDIKPTNM---EELNEVITAAEFHPID--CNLFVYSSSKGTIRLCDMRAAALCDRHSKC 150 (400)
Q Consensus 76 ~sp~~~~~~~l~ss~D~tI~lWd~~~~~~---~~~~~~V~sv~f~p~~--~~~las~s~Dg~i~lWD~~~~~~~~~~~~~ 150 (400)
|+|++ ...+++++.|++|++||+.+++. ..+...+.++.|+|.+ +.++++++.|+.|++||++++........
T Consensus 107 ~~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~- 184 (408)
T 4a11_B 107 WYPHD-TGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG- 184 (408)
T ss_dssp ECTTC-TTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC-
T ss_pred EccCC-CcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC-
Confidence 99943 23677788999999999988763 2345678999999864 24899999999999999998753321110
Q ss_pred eccCcccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEE
Q psy12356 151 LIEGTNCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISD 229 (400)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 229 (400)
. ...+..+. ..+++. ..++++.||.|++||++....+....................+|...|.+
T Consensus 185 ---~-~~~v~~~~----------~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 250 (408)
T 4a11_B 185 ---H-RQEILAVS----------WSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNG 250 (408)
T ss_dssp ---C-CSCEEEEE----------ECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEE
T ss_pred ---C-CCcEEEEE----------ECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeE
Confidence 0 01112222 234543 35666789999999998765321111100000111111223578889999
Q ss_pred EEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceecccccc
Q psy12356 230 VKISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTY 308 (400)
Q Consensus 230 v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 308 (400)
++|+|+|++|+++ .|++|++||+.++. ++..+.++....... ...... ..... ...+..+.+.
T Consensus 251 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~-----~~~~~~--~~~~~--------~~~~~~~~~~ 314 (408)
T 4a11_B 251 LCFTSDGLHLLTVGTDNRMRLWNSSNGE-NTLVNYGKVCNNSKK-----GLKFTV--SCGCS--------SEFVFVPYGS 314 (408)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTCC-BCCCCCCCCCCCCSS-----CCCCEE--CCSSS--------SCEEEEEETT
T ss_pred EEEcCCCCEEEEecCCCeEEEEECCCCc-cceeccccccccccc-----cceeEE--ecCCC--------ceEEEEecCC
Confidence 9999999999874 68999999999874 333333321100000 000000 00000 0000111111
Q ss_pred ceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 309 HINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 309 ~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
.|.-+.+. +++.+. . ..+|...|.+++|+|||++||++ .|++|++|+++..+
T Consensus 315 ~i~v~d~~-~~~~~~-----~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~ 367 (408)
T 4a11_B 315 TIAVYTVY-SGEQIT-----M-LKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE 367 (408)
T ss_dssp EEEEEETT-TCCEEE-----E-ECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred EEEEEECc-CCccee-----e-eccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence 12111111 111111 1 14799999999999999999997 69999999998654
No 52
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=1.2e-29 Score=260.49 Aligned_cols=214 Identities=13% Similarity=0.137 Sum_probs=149.4
Q ss_pred EEEEEECC--CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 6 REASQRFS--DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 6 v~~v~fsp--dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
|++++|+| ||++||+|+.||+|+|||+.++.... ....+....+.+|. ..|.+++|+|++.
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~~~~~~~------------~~v~~~~~s~~~~-- 129 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESN---SVEVNVKSEFQVLA------------GPISDISWDFEGR-- 129 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGT---EEEEEEEEEEECCS------------SCEEEEEECTTSS--
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccc---cccccccchhhccc------------ccEEEEEEeCCCC--
Confidence 99999999 99999999999999999996321000 00123456677776 4599999999874
Q ss_pred eEEEeeCC----CeEEEEEccCCC--cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccc
Q psy12356 84 HFLLSTND----QSFNIVDIKPTN--MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNC 157 (400)
Q Consensus 84 ~~l~ss~D----~tI~lWd~~~~~--~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~ 157 (400)
.+++++.| +.|++||..... +..|...|++++|+|++..++++++.|++|++||++++........+.. ...
T Consensus 130 ~l~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~--~~~ 207 (615)
T 1pgu_A 130 RLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHK--QGS 207 (615)
T ss_dssp EEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSC--TTC
T ss_pred EEEEeccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCC--CCc
Confidence 66667766 689999842211 3567788999999998755899999999999999988754321110000 000
Q ss_pred ceeceeccCchhhhhhcccC-cceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccc---ccccCeEEEEEC
Q psy12356 158 NCQGLIVPESKREERQSSQN-RREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS---EIISSISDVKIS 233 (400)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~---~h~~~V~~v~fS 233 (400)
.+..+. ..++ +...++++.||.|++||++++... ..+ .. +|...|.+++|+
T Consensus 208 ~v~~~~----------~~~~~~~~l~~~~~dg~i~vwd~~~~~~~----~~~-----------~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 208 FVRDVE----------FSPDSGEFVITVGSDRKISCFDGKSGEFL----KYI-----------EDDQEPVQGGIFALSWL 262 (615)
T ss_dssp CEEEEE----------ECSTTCCEEEEEETTCCEEEEETTTCCEE----EEC-----------CBTTBCCCSCEEEEEES
T ss_pred eEEEEE----------ECCCCCCEEEEEeCCCeEEEEECCCCCEe----EEe-----------cccccccCCceEEEEEc
Confidence 122222 3356 666666678999999999876532 111 02 577899999999
Q ss_pred CCCcEEEEe-cCCeEEEEeCCCCCCceeeecCC
Q psy12356 234 NSGRYMISR-DYLCVKVWDLHMESRPVETYPTH 265 (400)
Q Consensus 234 pdg~~las~-~D~tIklWD~~~~~~~l~~~~~h 265 (400)
++++|+++ .|++|++||++++. ++..+..|
T Consensus 263 -~~~~l~~~~~d~~i~~wd~~~~~-~~~~~~~~ 293 (615)
T 1pgu_A 263 -DSQKFATVGADATIRVWDVTTSK-CVQKWTLD 293 (615)
T ss_dssp -SSSEEEEEETTSEEEEEETTTTE-EEEEEECC
T ss_pred -CCCEEEEEcCCCcEEEEECCCCc-EEEEEcCC
Confidence 99999875 68999999999753 44444433
No 53
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=99.97 E-value=6.7e-30 Score=245.87 Aligned_cols=229 Identities=18% Similarity=0.260 Sum_probs=171.8
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|.+++|+|+|++||+|+.|+.|+||++.+.. +..+..+.+.+|.. .|.++.|+|++ .
T Consensus 99 ~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~-------~~~~~~~~~~~h~~------------~v~~~~~~~~~---~ 156 (340)
T 1got_B 99 WVMTCAYAPSGNYVACGGLDNICSIYNLKTRE-------GNVRVSRELAGHTG------------YLSCCRFLDDN---Q 156 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTCEEEEEETTTCS-------BSCEEEEEEECCSS------------CEEEEEEEETT---E
T ss_pred cEEEEEECCCCCEEEEEeCCCeEEEEECccCC-------CcceeEEEecCCCc------------cEEEEEECCCC---c
Confidence 48899999999999999999999999987542 22344567788873 48999999875 6
Q ss_pred EEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccccee
Q psy12356 85 FLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQ 160 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
+++++.|++|++||+++++ +..|...|++++|+|++ .+|++++.|++|++||++++.....+..+ ...+.
T Consensus 157 l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~sg~~d~~v~~wd~~~~~~~~~~~~h-----~~~v~ 230 (340)
T 1got_B 157 IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDT-RLFVSGACDASAKLWDVREGMCRQTFTGH-----ESDIN 230 (340)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCSEEEEECCC-----SSCEE
T ss_pred EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCC-----cCCEE
Confidence 8889999999999998876 34677889999999975 79999999999999999987432211100 01122
Q ss_pred ceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE
Q psy12356 161 GLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI 240 (400)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la 240 (400)
.+ .+.|++...++++.||+|++||++.+... ..+.. ..+...|.+++|+|+|++|+
T Consensus 231 ~v----------~~~p~~~~l~s~s~d~~v~iwd~~~~~~~----~~~~~----------~~~~~~v~~~~~s~~g~~l~ 286 (340)
T 1got_B 231 AI----------CFFPNGNAFATGSDDATCRLFDLRADQEL----MTYSH----------DNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp EE----------EECTTSSEEEEEETTSCEEEEETTTTEEE----EEECC----------TTCCSCEEEEEECTTSSEEE
T ss_pred EE----------EEcCCCCEEEEEcCCCcEEEEECCCCcEE----EEEcc----------CCcccceEEEEECCCCCEEE
Confidence 22 23466666777788999999999875432 11110 12335799999999999999
Q ss_pred Ee-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCc
Q psy12356 241 SR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQ 286 (400)
Q Consensus 241 s~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~ 286 (400)
++ .|++|+|||+.++ .++..+.+|. +.++|.++ +++.+++|++|+
T Consensus 287 ~g~~d~~i~vwd~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 287 AGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EECCCCeEEEEEcccC-cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 75 6899999999986 4678888985 45677654 466777777763
No 54
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=2.2e-29 Score=237.11 Aligned_cols=270 Identities=14% Similarity=0.176 Sum_probs=178.1
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
.++|+|||++ +||+|. |++|+|||+.+++ +++.++.|.. ...|++|+|+|+++ .+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~-----------~~~~~~~~~~----------~~~V~~v~~~~~~~--~l 82 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGD-----------ILQLLQMEQP----------GEYISSVAWIKEGN--YL 82 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCC-----------EEEEEECCST----------TCCEEEEEECTTSS--EE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCC-----------EEEEEEecCC----------CCeEEEEEECCCCC--EE
Confidence 3679999987 788765 9999999998642 3445554331 14599999999874 77
Q ss_pred EEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceec
Q psy12356 86 LLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQG 161 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
++++.|++|+|||++++++ ..|...+.++++.+ .++++++.++.+++|+...+..... ...... .....
T Consensus 83 ~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~~~~ 155 (318)
T 4ggc_A 83 AVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVA---TLSGHS-QEVCG 155 (318)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEE---EEECCS-SCEEE
T ss_pred EEEECCCcEEEeecCCceeEEEecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEE---EEcCcc-CceEE
Confidence 7889999999999998873 45666677666554 5899999999999999887632100 000000 00111
Q ss_pred eeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE-
Q psy12356 162 LIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI- 240 (400)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la- 240 (400)
. ...+++...++++.||+|++||+++++...... .....|.+.|.+++|+|++..++
T Consensus 156 ~----------~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~~~~v~~~~~~~~~~~~~~ 213 (318)
T 4ggc_A 156 L----------RWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL------------QTFTQHQGAVKAVAWCPWQSNVLA 213 (318)
T ss_dssp E----------EECTTSSEEEEEETTSCEEEEESSCBTTBSCCS------------EEECCCCSCEEEEEECTTSTTEEE
T ss_pred E----------EEcCCCCEEEEEecCcceeEEECCCCcccccce------------eeecccCCceEEEEecCCCCcEEE
Confidence 1 122444455666789999999998765321111 11224567899999999876432
Q ss_pred --Ee-cCCeEEEEeCCCCCCceeeecCCC------cCCCCcc-c--CCCCCceeecCcccccceeeccCccceecccccc
Q psy12356 241 --SR-DYLCVKVWDLHMESRPVETYPTHT------KEENGQL-R--DPSNITALRVPQIKPIELTVEASPRRIFANAHTY 308 (400)
Q Consensus 241 --s~-~D~tIklWD~~~~~~~l~~~~~h~------~~~~g~~-~--~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 308 (400)
++ .+++|+|||.+... .......+. +.+++.. + +++.+++|++|++...
T Consensus 214 ~~~~~~~~~i~lwd~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~------------------ 274 (318)
T 4ggc_A 214 TGGGTSDRHIRIWNVCSGA-CLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM------------------ 274 (318)
T ss_dssp EEECTTTCEEEEEETTTCC-EEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC------------------
T ss_pred EEecCCCCEEEEEeccccc-ccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCC------------------
Confidence 33 47999999999764 333332221 2333332 1 1335566666654211
Q ss_pred ceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCcc
Q psy12356 309 HINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEI 365 (400)
Q Consensus 309 ~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~ 365 (400)
+.+. .+ .||.+.|++|+|||||++|||+ .|++|||||+..
T Consensus 275 -----------~~~~-----~l-~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 275 -----------AKVA-----EL-KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp -----------CEEE-----EE-CCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -----------cEEE-----EE-cCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 1110 11 4899999999999999999997 799999999864
No 55
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=236.87 Aligned_cols=266 Identities=15% Similarity=0.153 Sum_probs=185.8
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++| |+|++||+|+.||.|+|||+.+. +....+..|. ..|.+++|+|++.
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~-----------~~~~~~~~~~------------~~v~~~~~~~~~~-- 72 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQ-----------WLGTVVYTGQ------------GFLNSVCYDSEKE-- 72 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEEEEESSS-----------EEEEEEEECS------------SCEEEEEEETTTT--
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEEEECCCC-----------EEEEEeecCC------------ccEEEEEECCCCC--
Confidence 46899999 99999999999999999999743 2345667775 3599999999874
Q ss_pred eEEEeeCCCeEEEEEccCCC-------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
.+++++.|+.|++|++.... +..|...|.+++|++ +++++++.|++|++||.... ... .... .
T Consensus 73 ~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~l~~~~~d~~i~~~d~~~~--~~~----~~~~-~ 142 (313)
T 3odt_A 73 LLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSFQD---GVVISGSWDKTAKVWKEGSL--VYN----LQAH-N 142 (313)
T ss_dssp EEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTEE--EEE----EECC-S
T ss_pred EEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEecC---CEEEEEeCCCCEEEEcCCcE--EEe----cccC-C
Confidence 77788999999999987543 234677899999943 58999999999999993222 110 0000 0
Q ss_pred cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC
Q psy12356 157 CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG 236 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg 236 (400)
..+..+.+. .++....++++.||.|++||..... ..+. ..|...|.+++|+|++
T Consensus 143 ~~v~~~~~~---------~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~-----------~~~~~~i~~~~~~~~~ 196 (313)
T 3odt_A 143 ASVWDAKVV---------SFSENKFLTASADKTIKLWQNDKVI------KTFS-----------GIHNDVVRHLAVVDDG 196 (313)
T ss_dssp SCEEEEEEE---------ETTTTEEEEEETTSCEEEEETTEEE------EEEC-----------SSCSSCEEEEEEEETT
T ss_pred CceeEEEEc---------cCCCCEEEEEECCCCEEEEecCceE------EEEe-----------ccCcccEEEEEEcCCC
Confidence 111111111 1134445556689999999954321 1111 1266789999999999
Q ss_pred cEEEEecCCeEEEEeCCCCCCceeeecCCC-------cCCCCcccCCCCCceeecCcccccceeeccCccceeccccccc
Q psy12356 237 RYMISRDYLCVKVWDLHMESRPVETYPTHT-------KEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYH 309 (400)
Q Consensus 237 ~~las~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
++++++.|++|++||++++ .++..+.+|. +.++|.+++++.++.+++|++...+.
T Consensus 197 ~~~~~~~dg~i~i~d~~~~-~~~~~~~~~~~~i~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~----------------- 258 (313)
T 3odt_A 197 HFISCSNDGLIKLVDMHTG-DVLRTYEGHESFVYCIKLLPNGDIVSCGEDRTVRIWSKENGSL----------------- 258 (313)
T ss_dssp EEEEEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECTTSCEEEEETTSEEEEECTTTCCE-----------------
T ss_pred eEEEccCCCeEEEEECCch-hhhhhhhcCCceEEEEEEecCCCEEEEecCCEEEEEECCCCce-----------------
Confidence 9555578999999999986 4678887774 34555555555666666665422110
Q ss_pred eEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEecCCeEEEEeCccCC
Q psy12356 310 INSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSADDLRINLWHLEITD 367 (400)
Q Consensus 310 i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~~D~~i~lW~~~~~~ 367 (400)
+. . ..+|...|.+++|+|||++++++.|++|++|+++..+
T Consensus 259 ~~-----------------~-~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 259 KQ-----------------V-ITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKSR 298 (313)
T ss_dssp EE-----------------E-EECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGGG
T ss_pred eE-----------------E-EeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCCc
Confidence 00 0 1367888999999999996655689999999998643
No 56
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=99.97 E-value=4.2e-30 Score=245.82 Aligned_cols=226 Identities=13% Similarity=0.147 Sum_probs=173.3
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|++.+||+|+.|++|+|||+.++ +.+..+..|.. .+.+++|+|+++
T Consensus 81 ~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~-----------~~~~~~~~~~~------------~~~~~~~spdg~-- 135 (321)
T 3ow8_A 81 LGVVSVDISHTLPIAASSSLDAHIRLWDLENG-----------KQIKSIDAGPV------------DAWTLAFSPDSQ-- 135 (321)
T ss_dssp SCEEEEEECSSSSEEEEEETTSEEEEEETTTT-----------EEEEEEECCTT------------CCCCEEECTTSS--
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEECCCC-----------CEEEEEeCCCc------------cEEEEEECCCCC--
Confidence 35899999999999999999999999999753 24556666653 377899999874
Q ss_pred eEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+++++.|++|++||+++++. ..+...|.+++|+|++ ++||+++.|++|++||+++++.......+ ...+
T Consensus 136 ~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~~~~~~~~h-----~~~v 209 (321)
T 3ow8_A 136 YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGKLLHTLEGH-----AMPI 209 (321)
T ss_dssp EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECCC-----SSCC
T ss_pred EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCcEEEEEccc-----CCce
Confidence 677788999999999988763 3456679999999985 79999999999999999988543221110 0111
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
..+ .+.|++...++++.|++|++||++.+... . .+.+|...|.+++|+|+|++|
T Consensus 210 ~~l----------~~spd~~~l~s~s~dg~i~iwd~~~~~~~----~------------~~~~h~~~v~~~~~sp~~~~l 263 (321)
T 3ow8_A 210 RSL----------TFSPDSQLLVTASDDGYIKIYDVQHANLA----G------------TLSGHASWVLNVAFCPDDTHF 263 (321)
T ss_dssp CEE----------EECTTSCEEEEECTTSCEEEEETTTCCEE----E------------EECCCSSCEEEEEECTTSSEE
T ss_pred eEE----------EEcCCCCEEEEEcCCCeEEEEECCCccee----E------------EEcCCCCceEEEEECCCCCEE
Confidence 222 23467767778889999999999875432 1 134788899999999999999
Q ss_pred EEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCcc-cCCCCCceeecCcc
Q psy12356 240 ISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQL-RDPSNITALRVPQI 287 (400)
Q Consensus 240 as~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~-~~~~~~~~i~l~~~ 287 (400)
+++ .|++|+|||++++ .+++++.+|. +.++|.+ ++++.+++|++|+.
T Consensus 264 ~s~s~D~~v~iwd~~~~-~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 264 VSSSSDKSVKVWDVGTR-TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp EEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred EEEeCCCcEEEEeCCCC-EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 974 6999999999986 5788898885 4566664 35667777777763
No 57
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.5e-30 Score=262.70 Aligned_cols=304 Identities=9% Similarity=0.001 Sum_probs=201.0
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.-|.+|+|||||++|||+|.|++|+ |... .+.+.+|. ..|.+|+|+|++
T Consensus 16 ~~v~sv~~SpDG~~iASas~D~TV~--d~~~--------------~~~l~gh~------------~~v~~V~FsPdg--- 64 (588)
T 2j04_A 16 DWKNNLTWARDGTLYLTTFPDISIG--QPKY--------------AKDINCNS------------KNLFHVKEFPLE--- 64 (588)
T ss_dssp SSSCCEEECTTSCEEEECSSSEEEE--EECC--------------CSCCSSBG------------GGTEEEEEECCC---
T ss_pred ccEEEEEECCCCCEEEEEcCCceee--cccc--------------cceecCCC------------ccEEEEEECCCC---
Confidence 3478999999999999999999999 6332 12446776 349999999986
Q ss_pred eEEEeeCCCeEEEEEccCCCcc--cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceec
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNME--ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQG 161 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~--~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
.++++++|+.+..... .+...|.+++|+|+| .+||+++.||+|++||..+ ++.... +........+.
T Consensus 65 ------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG-~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~- 133 (588)
T 2j04_A 65 ------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPID-DWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYH- 133 (588)
T ss_dssp ------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSS-SCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEE-
T ss_pred ------CcceEEEEeCCCceEeecCCCCcEEEEEECCCC-CEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEE-
Confidence 4667666765443321 346789999999986 7899999999999999543 111100 00000000122
Q ss_pred eeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCc---ccccccCCCCCCCcccccccccCeEEEEECCCCcE
Q psy12356 162 LIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDR---HSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRY 238 (400)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~ 238 (400)
.+.++|++...++++.||+|+|||+..+..... ..+.+.. ...+|.++|.+|+||||| +
T Consensus 134 ---------svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~--------~~~gh~~~V~sVawSPdg-L 195 (588)
T 2j04_A 134 ---------CFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRL--------SDAGSKDWVTHIVWYEDV-L 195 (588)
T ss_dssp ---------EEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEEC--------SCTTCCCCEEEEEEETTE-E
T ss_pred ---------EEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeec--------ccccccccEEEEEEcCCc-E
Confidence 234458888888888999999999987542110 0111111 024688899999999999 6
Q ss_pred EEEecCCeEEEEeCCCCCC--ceeee-cCCC-------cCCCCcc-cCCCCCceeecCcccccceeeccCccceeccccc
Q psy12356 239 MISRDYLCVKVWDLHMESR--PVETY-PTHT-------KEENGQL-RDPSNITALRVPQIKPIELTVEASPRRIFANAHT 307 (400)
Q Consensus 239 las~~D~tIklWD~~~~~~--~l~~~-~~h~-------~~~~g~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (400)
++++.|++||+||+..+.. ..+++ ++|. ++ |.+ ++++ +++|++|++..... ..+..+|.
T Consensus 196 aass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~-------~~~~~gh~ 265 (588)
T 2j04_A 196 VAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI-------SSLKTGSL 265 (588)
T ss_dssp EEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEE-------EEEECSCC
T ss_pred EEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeE-------EEEEcCCC
Confidence 6677899999999987642 22456 4674 33 444 3444 68999998754332 12233699
Q ss_pred cceEEEEE--cCCCcEEeecc---c------------------------chhh--------cccccceeEEEEccCCCEE
Q psy12356 308 YHINSISV--NSDQLTVEASP---R------------------------GIFA--------DAHTYHISSTSVNSDQETY 350 (400)
Q Consensus 308 ~~i~~i~~--s~dg~~~~~~~---~------------------------~~~~--------~gh~~~V~~i~fspDg~~l 350 (400)
..++++.| +|||+.++.+. . +.|. ..+...|++|+|||||+++
T Consensus 266 ~~V~~va~~~s~d~~~La~a~edG~klw~~d~~~~spd~~l~a~~d~~v~lW~~~g~~l~~~~~~~~I~~va~SPdG~~l 345 (588)
T 2j04_A 266 ENFHIIPLNHEKESTILLMSNKTSYKVLLEDELHVTADNIIAPYLEKKFKKWSTIWNEFNNYETTLVIHGISLSPDGYSI 345 (588)
T ss_dssp SCCCEEEETTCSSCEEEEECSSCEEEEEESSSEEEECCCSSHHHHHHHHHHTTTTTTSSSSSCCEEEEEEEEECTTSSEE
T ss_pred ceEEEEEeeeCCCCCEEEEEcCCCCEEEeeccEEECCCceEEEEcCCEEEEEECCCCceeeeccceEEEEEEECCCCCEE
Confidence 99999999 99998776543 0 0111 1235579999999999999
Q ss_pred EEe-c-CCeEEEEeCccCCeeEEEEeecCC
Q psy12356 351 LSA-D-DLRINLWHLEITDQSFNIVDIKPT 378 (400)
Q Consensus 351 as~-~-D~~i~lW~~~~~~~~~~~~~~~~~ 378 (400)
|++ . +..+-=+.+. .+.-+++..++=+
T Consensus 346 A~~~~i~~~~~~y~i~-s~~~~~i~f~pL~ 374 (588)
T 2j04_A 346 AIVYDMERVAFKYKIA-SEQSFNIMFAPLY 374 (588)
T ss_dssp EEEEEEECSSCCCCCS-SSCCEEEEEEESS
T ss_pred EEEEeccCceeEEeec-cceEEEEEEEEcc
Confidence 986 2 3322123333 2445677666544
No 58
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=99.97 E-value=2.8e-30 Score=253.59 Aligned_cols=255 Identities=14% Similarity=0.137 Sum_probs=188.9
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
+++++|+|||++||+|+.||+|++||+.+.. ....+..|. .+....|+|++. .+
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~-----------~~~~~~~~~-------------~~~~~~~~~~~~--~l 112 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRD-----------GSKMLKRAD-------------YTAVDTAKLQMR--RF 112 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEE-----------TTTTSCSCC-------------EEEEEEECSSSC--EE
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccc-----------eeeEEecCC-------------ceEEEEEecCCC--EE
Confidence 4578999999999999999999999987532 122333442 234456777764 67
Q ss_pred EEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceec
Q psy12356 86 LLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQG 161 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
++++.|++|+|||++++.. ..|...|++++|+|++ ++|++++.|++|++||++++....
T Consensus 113 ~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~d~~i~iwd~~~~~~~~---------------- 175 (420)
T 3vl1_A 113 ILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSG-EALISSSQDMQLKIWSVKDGSNPR---------------- 175 (420)
T ss_dssp EEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTS-SEEEEEETTSEEEEEETTTCCCCE----------------
T ss_pred EEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCC-CEEEEEeCCCeEEEEeCCCCcCce----------------
Confidence 7789999999999988762 4677899999999985 799999999999999998772100
Q ss_pred eeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEE
Q psy12356 162 LIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMIS 241 (400)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las 241 (400)
. +.+|...|.+++|+|++++|++
T Consensus 176 ---------------------------------------------~------------~~~h~~~v~~~~~~~~~~~l~s 198 (420)
T 3vl1_A 176 ---------------------------------------------T------------LIGHRATVTDIAIIDRGRNVLS 198 (420)
T ss_dssp ---------------------------------------------E------------EECCSSCEEEEEEETTTTEEEE
T ss_pred ---------------------------------------------E------------EcCCCCcEEEEEEcCCCCEEEE
Confidence 0 1256688999999999999987
Q ss_pred e-cCCeEEEEeCCCCCCceeeecCCC-------------------------------cCCCCccc-CCCCCceeecCccc
Q psy12356 242 R-DYLCVKVWDLHMESRPVETYPTHT-------------------------------KEENGQLR-DPSNITALRVPQIK 288 (400)
Q Consensus 242 ~-~D~tIklWD~~~~~~~l~~~~~h~-------------------------------~~~~g~~~-~~~~~~~i~l~~~~ 288 (400)
+ .|++|++||++++ .++..+..|. +.++|+++ +++.++.+++|++.
T Consensus 199 ~~~d~~v~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~ 277 (420)
T 3vl1_A 199 ASLDGTIRLWECGTG-TTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVF 277 (420)
T ss_dssp EETTSCEEEEETTTT-EEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETT
T ss_pred EcCCCcEEEeECCCC-ceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECC
Confidence 4 6899999999986 4666665432 34677754 46778899999875
Q ss_pred ccceeeccCccceeccccccceEEEEEcCCCc-EEeeccc----chh-----------hcc-cccceeEEEEccCCCEEE
Q psy12356 289 PIELTVEASPRRIFANAHTYHINSISVNSDQL-TVEASPR----GIF-----------ADA-HTYHISSTSVNSDQETYL 351 (400)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~-~~~~~~~----~~~-----------~~g-h~~~V~~i~fspDg~~la 351 (400)
..+.. ..+..+|...|.+++|+|+|+ ++++.+. ++| ..+ |...|.++ ++|+|++|+
T Consensus 278 ~~~~~------~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~ 350 (420)
T 3vl1_A 278 SKEQT------IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNV-YFAAGALFV 350 (420)
T ss_dssp TCCEE------EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEE-EEETTEEEE
T ss_pred CCcee------EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEE-EeCCCCEEE
Confidence 43321 122346888999999999998 7765332 111 123 67788877 556889999
Q ss_pred Ee-cCCeEEEEeCccCCe
Q psy12356 352 SA-DDLRINLWHLEITDQ 368 (400)
Q Consensus 352 s~-~D~~i~lW~~~~~~~ 368 (400)
++ .|++|++|++...++
T Consensus 351 s~~~d~~v~iw~~~~~~~ 368 (420)
T 3vl1_A 351 SSGFDTSIKLDIISDPES 368 (420)
T ss_dssp EETTTEEEEEEEECCTTC
T ss_pred EecCCccEEEEeccCCCC
Confidence 97 699999999876443
No 59
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.97 E-value=1.8e-29 Score=251.82 Aligned_cols=303 Identities=13% Similarity=0.093 Sum_probs=203.9
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
+.++.| ++++||+|+.||+|+|||+.++ +.+..+.+|.. .|.+++|+|++ .+
T Consensus 125 ~~~~~~--~~~~l~sgs~dg~i~vwd~~~~-----------~~~~~~~~h~~------------~V~~l~~~~~~---~l 176 (464)
T 3v7d_B 125 ITCLQF--EDNYVITGADDKMIRVYDSINK-----------KFLLQLSGHDG------------GVWALKYAHGG---IL 176 (464)
T ss_dssp EEEEEE--ETTEEEEEETTSCEEEEETTTT-----------EEEEEECCCSS------------CEEEEEECSTT---EE
T ss_pred EEEEEE--CCCEEEEEcCCCcEEEEECCCC-----------cEEEEEeCCCc------------CEEEEEEcCCC---EE
Confidence 566666 6789999999999999998753 35667888874 59999998865 78
Q ss_pred EEeeCCCeEEEEEccCCC----cccccccEEEEEEecC-CCCEEEEEeCCCeEEEEecccccccccccceec----cCc-
Q psy12356 86 LLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPI-DCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLI----EGT- 155 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~-~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~----~~~- 155 (400)
++++.|++|++||+++++ +..|...|.+++|+|. ++.++++++.|++|++||++++........... ...
T Consensus 177 ~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 256 (464)
T 3v7d_B 177 VSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTP 256 (464)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCG
T ss_pred EEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeecc
Confidence 889999999999999886 3457788999999952 347899999999999999998743211100000 000
Q ss_pred ccceeceeccCchhhhh-hcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC
Q psy12356 156 NCNCQGLIVPESKREER-QSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN 234 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp 234 (400)
.....-.....++...+ ...+++...++++.||.|++||++++... .. +.+|...|.+++|+|
T Consensus 257 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~----~~------------~~~~~~~v~~~~~~~ 320 (464)
T 3v7d_B 257 EENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCL----YI------------LSGHTDRIYSTIYDH 320 (464)
T ss_dssp GGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEE----EE------------ECCCSSCEEEEEEET
T ss_pred CCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE----EE------------ecCCCCCEEEEEEcC
Confidence 00000000000000000 01233444566678999999999876532 11 336778999999999
Q ss_pred CCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcC-----CCCcc-cCCCCCceeecCcccccceeeccCccceeccccc
Q psy12356 235 SGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKE-----ENGQL-RDPSNITALRVPQIKPIELTVEASPRRIFANAHT 307 (400)
Q Consensus 235 dg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~-----~~g~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~ 307 (400)
++++|+++ .|++|++||++++ .++.++.+|... .++.+ ++++.++++++|++...... +...|.
T Consensus 321 ~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~~~~--------~~~~~~ 391 (464)
T 3v7d_B 321 ERKRCISASMDTTIRIWDLENG-ELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK--------FSYHHT 391 (464)
T ss_dssp TTTEEEEEETTSCEEEEETTTT-EEEEEECCCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEE--------EEEECT
T ss_pred CCCEEEEEeCCCcEEEEECCCC-cEEEEEeCCCCcEEEEEEcCCEEEEEeCCCcEEEEECCCCcee--------eeecCC
Confidence 99999875 6899999999986 478889888631 23443 46788899999987543221 122355
Q ss_pred cceEEEEEcCCCcEEeecccc---h-----------hhcccccceeEEEEccCCCEEEE-e-cCCeEEEEeC
Q psy12356 308 YHINSISVNSDQLTVEASPRG---I-----------FADAHTYHISSTSVNSDQETYLS-A-DDLRINLWHL 363 (400)
Q Consensus 308 ~~i~~i~~s~dg~~~~~~~~~---~-----------~~~gh~~~V~~i~fspDg~~las-~-~D~~i~lW~~ 363 (400)
..+..++|+|+|+++++.... + +..+|...|.+++|+ ++.+++ + +|+.+.+|-+
T Consensus 392 ~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~--~~~l~~~~~~~g~~~i~~l 461 (464)
T 3v7d_B 392 NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFK--GKTLVAAVEKDGQSFLEIL 461 (464)
T ss_dssp TCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSEEEEEEEE--TTEEEEEEEETTEEEEEEE
T ss_pred CCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCcEEEEEec--CCEEEEEEEeCCeEEEEEe
Confidence 567788899999888754321 1 124788899999997 444444 4 5766555443
No 60
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=99.97 E-value=1.1e-29 Score=249.37 Aligned_cols=242 Identities=16% Similarity=0.219 Sum_probs=170.2
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
|++++|+|||++||+|+.|++|+|||+.++ +.+..+.+|.. .|.+++|+|++. .+
T Consensus 126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~-----------~~~~~~~~h~~------------~v~~~~~~p~~~--~l 180 (393)
T 1erj_A 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENR-----------KIVMILQGHEQ------------DIYSLDYFPSGD--KL 180 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTT-----------EEEEEECCCSS------------CEEEEEECTTSS--EE
T ss_pred EEEEEECCCCCEEEEEcCCCeEEEEECCCC-----------cEEEEEccCCC------------CEEEEEEcCCCC--EE
Confidence 899999999999999999999999999753 34567888874 499999999874 77
Q ss_pred EEeeCCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc--cccee
Q psy12356 86 LLSTNDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT--NCNCQ 160 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~--~~~~~ 160 (400)
++++.|++|+|||++++++. .+...+.+++|+|.++++|++++.|++|++||++++.+............ ...+.
T Consensus 181 ~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~ 260 (393)
T 1erj_A 181 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVY 260 (393)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEE
T ss_pred EEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEE
Confidence 78899999999999987632 34567899999995568999999999999999998754322110000000 01122
Q ss_pred ceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE
Q psy12356 161 GLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI 240 (400)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la 240 (400)
.+ .+.+++...++++.|++|++||++....... ...+........+.+|...|.+++|+|++++|+
T Consensus 261 ~v----------~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~----~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 326 (393)
T 1erj_A 261 SV----------VFTRDGQSVVSGSLDRSVKLWNLQNANNKSD----SKTPNSGTCEVTYIGHKDFVLSVATTQNDEYIL 326 (393)
T ss_dssp EE----------EECTTSSEEEEEETTSEEEEEEC-------------------CEEEEEECCSSCEEEEEECGGGCEEE
T ss_pred EE----------EECCCCCEEEEEeCCCEEEEEECCCCCCccc----ccCCCCCcceEEEecccCcEEEEEECCCCCEEE
Confidence 22 2346666677778899999999986432110 000000001112457889999999999999999
Q ss_pred Ee-cCCeEEEEeCCCCCCceeeecCCCc-------------CCCCccc-CCCCCceeecCcc
Q psy12356 241 SR-DYLCVKVWDLHMESRPVETYPTHTK-------------EENGQLR-DPSNITALRVPQI 287 (400)
Q Consensus 241 s~-~D~tIklWD~~~~~~~l~~~~~h~~-------------~~~g~~~-~~~~~~~i~l~~~ 287 (400)
++ .|++|++||++++ .++..+.+|.. .+++.++ +++.|+++++|++
T Consensus 327 sgs~D~~v~iwd~~~~-~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~ 387 (393)
T 1erj_A 327 SGSKDRGVLFWDKKSG-NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 387 (393)
T ss_dssp EEETTSEEEEEETTTC-CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEE
T ss_pred EEeCCCeEEEEECCCC-eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcc
Confidence 75 6999999999986 47888888852 1345543 4667777777765
No 61
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=99.97 E-value=3.7e-29 Score=256.88 Aligned_cols=314 Identities=14% Similarity=0.130 Sum_probs=202.7
Q ss_pred eeEEEEEECCCCC-eEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEec-cC
Q psy12356 4 YMREASQRFSDGE-LLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR-KN 81 (400)
Q Consensus 4 ~~v~~v~fspdG~-~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~-~~ 81 (400)
..|.+++|+|+|+ +|++++.|++|++||..+. +.+..+.+|... ...|.+++|+|+ ++
T Consensus 161 ~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~-----------~~~~~~~~~~~~---------~~~v~~~~~~~~~~~ 220 (615)
T 1pgu_A 161 QRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF-----------KFSASDRTHHKQ---------GSFVRDVEFSPDSGE 220 (615)
T ss_dssp SCEEEEEECSSSSCEEEEEETTTEEEEEETTTB-----------EEEEEECSSSCT---------TCCEEEEEECSTTCC
T ss_pred ccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCc-----------ceeeeecccCCC---------CceEEEEEECCCCCC
Confidence 4589999999998 8999999999999998742 456678888630 014999999998 64
Q ss_pred CceEEEeeCCCeEEEEEccCCC----c-c---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceecc
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPTN----M-E---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIE 153 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~~----~-~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~ 153 (400)
.+++++.|++|++||+.+++ + . .|...|.+++|+ + +++|++++.|++|++||++++............
T Consensus 221 --~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~ 296 (615)
T 1pgu_A 221 --FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-D-SQKFATVGADATIRVWDVTTSKCVQKWTLDKQQ 296 (615)
T ss_dssp --EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-S-SSEEEEEETTSEEEEEETTTTEEEEEEECCTTC
T ss_pred --EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-C-CCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc
Confidence 67778899999999998876 2 3 567789999999 6 579999999999999999987543221100000
Q ss_pred CcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeeccccccc--------------------------------
Q psy12356 154 GTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALC-------------------------------- 201 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~-------------------------------- 201 (400)
. ......+.+ +++...+.++.||.|++||++++...
T Consensus 297 ~-~~~~~~~~~-----------~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~ 364 (615)
T 1pgu_A 297 L-GNQQVGVVA-----------TGNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSS 364 (615)
T ss_dssp G-GGCEEEEEE-----------EETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTT
T ss_pred c-cCceeEEEe-----------CCCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEc
Confidence 0 000001111 12222333334555555555442211
Q ss_pred ---------------------------CcccccccCC----------------------------------CCCCCcccc
Q psy12356 202 ---------------------------DRHSKFFEEP----------------------------------EDPTNKSFF 220 (400)
Q Consensus 202 ---------------------------~~~~~~~~~~----------------------------------~~~~~~~~~ 220 (400)
++.++.|... ...... .
T Consensus 365 ~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 442 (615)
T 1pgu_A 365 SSMHQDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIK--S 442 (615)
T ss_dssp TEEECCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEE--E
T ss_pred hhhcCcccCceEEEEECCCcEEEEEeCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceee--e
Confidence 0000000000 000000 0
Q ss_pred cccccCeEEEEECCCCcEEEE-ec-CCeEEEEeCCCCCCce-eeecCCC-------cCCCCccc-CCCCCceeecCcccc
Q psy12356 221 SEIISSISDVKISNSGRYMIS-RD-YLCVKVWDLHMESRPV-ETYPTHT-------KEENGQLR-DPSNITALRVPQIKP 289 (400)
Q Consensus 221 ~~h~~~V~~v~fSpdg~~las-~~-D~tIklWD~~~~~~~l-~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~ 289 (400)
..|...+.+++|+ +++|++ +. |++|++||+.++. .. ..+.+|. +.++|+++ +++.++.+++|++..
T Consensus 443 ~~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 519 (615)
T 1pgu_A 443 VRLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE-VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 519 (615)
T ss_dssp EECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE-EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred cccCCCceEEEEc--CCEEEEeecCCCeEEEEECCCcc-ccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCC
Confidence 0133445555555 555654 34 7788888877642 11 4556664 56888875 467889999998864
Q ss_pred cceeeccCccceeccccccceEEEEEcC----------CCcEEeecccc----hh-----------hcccccceeEEEEc
Q psy12356 290 IELTVEASPRRIFANAHTYHINSISVNS----------DQLTVEASPRG----IF-----------ADAHTYHISSTSVN 344 (400)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~i~~i~~s~----------dg~~~~~~~~~----~~-----------~~gh~~~V~~i~fs 344 (400)
.+.. ..+...|...|++++|+| ||+++++.+.. +| ..+|...|.+++|+
T Consensus 520 ~~~~------~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s 593 (615)
T 1pgu_A 520 REVK------TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE 593 (615)
T ss_dssp TEEE------ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEE
T ss_pred Ccce------eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEc
Confidence 4332 122223899999999999 99998864321 11 25899999999999
Q ss_pred cCCCEEEEe-cCCeEEEEeCcc
Q psy12356 345 SDQETYLSA-DDLRINLWHLEI 365 (400)
Q Consensus 345 pDg~~las~-~D~~i~lW~~~~ 365 (400)
|||+ |+++ .|++|++|+++.
T Consensus 594 ~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 594 TPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ETTE-EEEEETTSCEEEEEEC-
T ss_pred CCCC-eEEecCCceEEEEeeec
Confidence 9999 9996 799999999874
No 62
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3e-30 Score=255.39 Aligned_cols=291 Identities=12% Similarity=0.094 Sum_probs=203.6
Q ss_pred EECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeee-eccCcchhhcccccccceeeEEEEEe-ccCCceEEE
Q psy12356 10 QRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLR-RKNQAHFLL 87 (400)
Q Consensus 10 ~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~v~~sp-~~~~~~~l~ 87 (400)
.|+|+|+.+++++ .|+... +++..+ .+|+ +.|++++|+| +++ .+++
T Consensus 34 ~f~~~~~~~~~~~------~w~~~g------------~~~~~~~~~h~------------~~V~~~~~s~~~~~--~l~s 81 (437)
T 3gre_A 34 EFGPIQEIVRSPN------MGNLRG------------KLIATLMENEP------------NSITSSAVSPGETP--YLIT 81 (437)
T ss_dssp GGCCCCCCCCCCC------GGGCCC------------CEEEEECTTTT------------SCEEEEEEECSSSC--EEEE
T ss_pred hcCCccccccccc------cccccc------------eEEeeeccCCC------------CceEEEEECCCCCC--EEEE
Confidence 5899999999876 387542 345677 7786 3599999999 764 7778
Q ss_pred eeCCCeEEEEEccC---CC-c----c-cccccEEEEEEecCCCCEEEEEeCCCeEEEEecc---cccccccccceeccCc
Q psy12356 88 STNDQSFNIVDIKP---TN-M----E-ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMR---AAALCDRHSKCLIEGT 155 (400)
Q Consensus 88 ss~D~tI~lWd~~~---~~-~----~-~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~---~~~~~~~~~~~~~~~~ 155 (400)
++.|++|+|||+.+ +. . . .|...|++++|+|++ ++|++++.|++|++||+. .+..... ..
T Consensus 82 ~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~s~s~dg~i~vwd~~~~~~~~~~~~-------~~ 153 (437)
T 3gre_A 82 GSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNF-DAFAVSSKDGQIIVLKVNHYQQESEVKF-------LN 153 (437)
T ss_dssp EETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTS-SEEEEEETTSEEEEEEEEEEEETTEEEE-------EE
T ss_pred ecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCC-CEEEEEeCCCEEEEEEeccccCCceeec-------cc
Confidence 89999999999976 43 1 1 467789999999974 799999999999999995 3322111 10
Q ss_pred ccceeceeccCc-hhhh---h--hcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEE
Q psy12356 156 NCNCQGLIVPES-KREE---R--QSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISD 229 (400)
Q Consensus 156 ~~~~~~~~~~~~-~~~~---~--~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 229 (400)
...+..+.+.+. .... + ...+++...++++.||.|++||++++... ..+..+ .|...|.+
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~----------~h~~~v~~ 219 (437)
T 3gre_A 154 CECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERL----QIIENS----------PRHGAVSS 219 (437)
T ss_dssp EEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEE----EEEECC----------GGGCCEEE
T ss_pred cceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeee----EEEccC----------CCCCceEE
Confidence 111111111110 0000 0 01245555666778999999999876532 222111 26789999
Q ss_pred EEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeec-CCC-----------cCCCCccc-CCCCCceeecCcccccceeec
Q psy12356 230 VKISNSGRYMISR-DYLCVKVWDLHMESRPVETYP-THT-----------KEENGQLR-DPSNITALRVPQIKPIELTVE 295 (400)
Q Consensus 230 v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~-~h~-----------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~ 295 (400)
++|+|++++|+++ .|++|+|||++++ .+++++. +|. +.++++++ +++.+++|++|++...+.
T Consensus 220 ~~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~--- 295 (437)
T 3gre_A 220 ICIDEECCVLILGTTRGIIDIWDIRFN-VLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHC--- 295 (437)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETTTT-EEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEE---
T ss_pred EEECCCCCEEEEEcCCCeEEEEEcCCc-cEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcE---
Confidence 9999999999974 6899999999985 4677664 442 33567654 578899999998854322
Q ss_pred cCccceeccccccceEEEEEcCCCcEEeecccchhhcc--cccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 296 ASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADA--HTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 296 ~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~g--h~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
.+.+ .+|...+..+.|+|+++.+.... ..| |...|.+++|+ ++++|+++ .|++|++||+..++
T Consensus 296 ---~~~~-~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~ 361 (437)
T 3gre_A 296 ---QYAF-INSDEQPSMEHFLPIEKGLEELN----FCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS 361 (437)
T ss_dssp ---EEEE-ESSSSCCCGGGGSCBCSSGGGCC----CCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred ---EEEE-EcCCCCCccceecccccccccce----ecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence 2222 46777788888998876552111 134 99999999999 88999997 69999999998755
No 63
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=99.97 E-value=3.5e-29 Score=242.96 Aligned_cols=200 Identities=12% Similarity=0.134 Sum_probs=140.4
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|.+++|+||+++| +++.||+|+|||+.+++.. ........+|+ ..|++|+|+|+++ .
T Consensus 96 ~V~~~~~s~d~~~l-~~s~dg~v~lWd~~~~~~~-------~~~~~~~~~h~------------~~V~~v~~spdg~--~ 153 (357)
T 4g56_B 96 GVTDVAWVSEKGIL-VASDSGAVELWEILEKESL-------LVNKFAKYEHD------------DIVKTLSVFSDGT--Q 153 (357)
T ss_dssp CEEEEEEETTTEEE-EEETTSCEEEC---------------CCCCEEECCCS------------SCEEEEEECSSSS--E
T ss_pred CEEEEEEcCCCCEE-EEECCCEEEEeecccccee-------EEEeeccCCCC------------CCEEEEEECCCCC--E
Confidence 48999999999755 5678999999999764311 00011233565 4599999999874 6
Q ss_pred EEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccccee
Q psy12356 85 FLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQ 160 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
+++++.|++|+|||+++++ +..|...|++++|+|++..++++++.|++|++||+++++........ .....+.
T Consensus 154 l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~---~~~~~v~ 230 (357)
T 4g56_B 154 AVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFC---ASDTIPT 230 (357)
T ss_dssp EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCT---TCCSCEE
T ss_pred EEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeec---ccccccc
Confidence 7788999999999999886 34577889999999987778999999999999999988432211000 0001111
Q ss_pred ceeccCchhhhhhcccC-cceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC-cE
Q psy12356 161 GLIVPESKREERQSSQN-RREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG-RY 238 (400)
Q Consensus 161 ~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg-~~ 238 (400)
.+.+ .|+ ...+++++.|+.|++||++++... +. +.+|...|.+|+|+|++ ++
T Consensus 231 ~v~~----------sp~~~~~la~g~~d~~i~~wd~~~~~~~----~~------------~~~~~~~v~~l~~sp~~~~~ 284 (357)
T 4g56_B 231 SVTW----------HPEKDDTFACGDETGNVSLVNIKNPDSA----QT------------SAVHSQNITGLAYSYHSSPF 284 (357)
T ss_dssp EEEE----------CTTSTTEEEEEESSSCEEEEESSCGGGC----EE------------ECCCSSCEEEEEECSSSSCC
T ss_pred chhh----------hhcccceEEEeecccceeEEECCCCcEe----EE------------EeccceeEEEEEEcCCCCCE
Confidence 2222 243 345566678999999999976532 11 34677899999999997 57
Q ss_pred EEE-ecCCeEEEEeCCCC
Q psy12356 239 MIS-RDYLCVKVWDLHME 255 (400)
Q Consensus 239 las-~~D~tIklWD~~~~ 255 (400)
||+ +.|++|+|||++++
T Consensus 285 lasgs~D~~i~iwd~~~~ 302 (357)
T 4g56_B 285 LASISEDCTVAVLDADFS 302 (357)
T ss_dssp EEEEETTSCEEEECTTSC
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 776 46899999999875
No 64
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=2.2e-28 Score=232.95 Aligned_cols=270 Identities=11% Similarity=0.020 Sum_probs=194.2
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|+|++||+|+.||+|+||++.+... ......+.+|. ..|.+++|+|++ .
T Consensus 12 ~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~--------~~~~~~~~~~~------------~~v~~~~~~~~~--~ 69 (342)
T 1yfq_A 12 DYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK--------NVDLLQSLRYK------------HPLLCCNFIDNT--D 69 (342)
T ss_dssp SCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT--------EEEEEEEEECS------------SCEEEEEEEESS--S
T ss_pred CcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCc--------cccceeeeecC------------CceEEEEECCCC--C
Confidence 4689999999999999999999999999976421 11233455665 459999999975 3
Q ss_pred -eEEEeeCCCeEEEEEc-cCCC---ccc--ccccEEEEEEecCCCCEEEEEeCCCeEEEEeccc---------ccccccc
Q psy12356 84 -HFLLSTNDQSFNIVDI-KPTN---MEE--LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA---------AALCDRH 147 (400)
Q Consensus 84 -~~l~ss~D~tI~lWd~-~~~~---~~~--~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~---------~~~~~~~ 147 (400)
.+++++.|++|++||+ .+++ +.. |...|++++|+| + ++|++++.|++|++||+++ +......
T Consensus 70 ~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 147 (342)
T 1yfq_A 70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred cEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEE
Confidence 4667889999999999 8776 345 778899999999 4 7899999999999999987 5322211
Q ss_pred cceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeeccc-ccccCcccccccCCCCCCCcccccccccC
Q psy12356 148 SKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRA-AALCDRHSKFFEEPEDPTNKSFFSEIISS 226 (400)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 226 (400)
. . ...+..+.+ .++. .+.++.|+.|++||++. +.... .. ....|...
T Consensus 148 ~-----~-~~~v~~~~~----------~~~~--l~~~~~d~~i~i~d~~~~~~~~~---~~-----------~~~~~~~~ 195 (342)
T 1yfq_A 148 K-----V-KNKIFTMDT----------NSSR--LIVGMNNSQVQWFRLPLCEDDNG---TI-----------EESGLKYQ 195 (342)
T ss_dssp S-----S-CCCEEEEEE----------CSSE--EEEEESTTEEEEEESSCCTTCCC---EE-----------EECSCSSC
T ss_pred e-----e-CCceEEEEe----------cCCc--EEEEeCCCeEEEEECCccccccc---ee-----------eecCCCCc
Confidence 0 0 011122222 2444 34445799999999987 43210 00 01245678
Q ss_pred eEEEEECC-CCcEEEE-ecCCeEEEEeCCCC-----CCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCcc
Q psy12356 227 ISDVKISN-SGRYMIS-RDYLCVKVWDLHME-----SRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPR 299 (400)
Q Consensus 227 V~~v~fSp-dg~~las-~~D~tIklWD~~~~-----~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~ 299 (400)
|.+++|+| +++++++ +.|+.|+|||++.. ..++..+.+|.....
T Consensus 196 i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------- 246 (342)
T 1yfq_A 196 IRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLK----------------------------- 246 (342)
T ss_dssp EEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTT-----------------------------
T ss_pred eeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccc-----------------------------
Confidence 99999999 9999986 46899999999876 256667766632110
Q ss_pred ceeccccccceEEEEEcCCCcEEeecccc----hh----------hccc-ccceeEEEEccCCCEEEEe-cCCe-EEEEe
Q psy12356 300 RIFANAHTYHINSISVNSDQLTVEASPRG----IF----------ADAH-TYHISSTSVNSDQETYLSA-DDLR-INLWH 362 (400)
Q Consensus 300 ~~~~~~~~~~i~~i~~s~dg~~~~~~~~~----~~----------~~gh-~~~V~~i~fspDg~~las~-~D~~-i~lW~ 362 (400)
..+|.+.|++++|+|||+++++.... +| ..+| ...|.+++ |||++||++ .|++ .+.|.
T Consensus 247 ---~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 247 ---DTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp ---CCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ---ccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 02466678889999998877754321 11 1477 99999999 999999997 6999 77776
Q ss_pred C
Q psy12356 363 L 363 (400)
Q Consensus 363 ~ 363 (400)
.
T Consensus 322 ~ 322 (342)
T 1yfq_A 322 I 322 (342)
T ss_dssp S
T ss_pred c
Confidence 4
No 65
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=258.60 Aligned_cols=269 Identities=9% Similarity=0.003 Sum_probs=171.9
Q ss_pred eeEEEEEECCC------CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 4 YMREASQRFSD------GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 4 ~~v~~v~fspd------G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
+.|++|+|+|+ |.+||||+.||+|+|||+.++...........++..++.+|+ ..|.+++|+
T Consensus 208 ~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~------------~~v~sv~~s 275 (524)
T 2j04_B 208 GEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD------------SLITTFDFL 275 (524)
T ss_dssp CSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT------------TCEEEEEES
T ss_pred CcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC------------CCEEEEEec
Confidence 46899999997 689999999999999999764211000000001223566776 459999999
Q ss_pred eccCCceEEEeeCCCeEEEEEccCCC-----cccccccEEEE--EEecCCCCEEEEEeCCCeEEEEecccccccccccce
Q psy12356 78 RRKNQAHFLLSTNDQSFNIVDIKPTN-----MEELNEVITAA--EFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKC 150 (400)
Q Consensus 78 p~~~~~~~l~ss~D~tI~lWd~~~~~-----~~~~~~~V~sv--~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~ 150 (400)
|++ .+++++.|++|+|||++++. +..|...|++| +|+|++.++|||+|.|++|||||++++........+
T Consensus 276 ~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~ 352 (524)
T 2j04_B 276 SPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSR 352 (524)
T ss_dssp SSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEE
T ss_pred CCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccc
Confidence 753 78889999999999998663 34577889999 567764378999999999999999987432211111
Q ss_pred eccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEE
Q psy12356 151 LIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDV 230 (400)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 230 (400)
... ..+.. +.++|++...++++.|++|+|||++.+.+. . .+.+|.+.|++|
T Consensus 353 ~~~---~~v~~----------v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~----~------------~l~gH~~~V~sv 403 (524)
T 2j04_B 353 FRG---SNLVP----------VVYCPQIYSYIYSDGASSLRAVPSRAAFAV----H------------PLVSRETTITAI 403 (524)
T ss_dssp CSC---CSCCC----------EEEETTTTEEEEECSSSEEEEEETTCTTCC----E------------EEEECSSCEEEE
T ss_pred ccc---Ccccc----------eEeCCCcCeEEEeCCCCcEEEEECcccccc----e------------eeecCCCceEEE
Confidence 000 01112 223466655666678999999999975431 1 134788999999
Q ss_pred EECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCC------------CcCCCCcccCCCCCceeecCcccccc-eeecc
Q psy12356 231 KISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTH------------TKEENGQLRDPSNITALRVPQIKPIE-LTVEA 296 (400)
Q Consensus 231 ~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h------------~~~~~g~~~~~~~~~~i~l~~~~~~~-~~~~~ 296 (400)
+|||+|++|+++ .|++|+|||+... .++.++.+ .+.++|+ .+++|+-.... ....+
T Consensus 404 a~Sp~g~~l~Sgs~Dgtv~lwd~~~~--~~~~~~~~~~~~~~~~v~~v~~sp~g~--------~~~~~~~~~~~~~~~~g 473 (524)
T 2j04_B 404 GVSRLHPMVLAGSADGSLIITNAARR--LLHGIKNSSATQKSLRLWKWDYSIKDD--------KYRIDSSYEVYPLTVND 473 (524)
T ss_dssp ECCSSCCBCEEEETTTEEECCBSCSS--TTTCC------CCCCEEEECBCCSSSC--------EEEECCCCCCCC-----
T ss_pred EeCCCCCeEEEEECCCEEEEEechHh--hccccccCccceeeeEEEEeccCCCCC--------eEEccCCceecccccCC
Confidence 999999999875 6999999998753 33332211 1223332 23333310000 00012
Q ss_pred CccceeccccccceEEEEEcCCCc---EEeeccc
Q psy12356 297 SPRRIFANAHTYHINSISVNSDQL---TVEASPR 327 (400)
Q Consensus 297 ~~~~~~~~~~~~~i~~i~~s~dg~---~~~~~~~ 327 (400)
..... +.+|...|++++|+||++ ++|++..
T Consensus 474 ~~~~~-l~gh~~~V~~Vafsp~~~~~~~lAsg~~ 506 (524)
T 2j04_B 474 VSKAK-IDAHGINITCTKWNETSAGGKCYAFSNS 506 (524)
T ss_dssp ---------CCCSCCCEEECCSTTTTTEEEEECT
T ss_pred cceee-ecCCCceEEEEECCCCCCccHHHHhhcc
Confidence 22222 357999999999999964 7776543
No 66
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=99.97 E-value=3.6e-29 Score=244.52 Aligned_cols=257 Identities=16% Similarity=0.204 Sum_probs=178.5
Q ss_pred eeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCC
Q psy12356 47 NVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCN 122 (400)
Q Consensus 47 ~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~ 122 (400)
.+.+++++|+ ..|++++|+|+++ .+++++.|++|+|||+.+++ +..|...|.+++|+|++ +
T Consensus 57 ~~~~~l~gH~------------~~V~~~~~sp~~~--~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g-~ 121 (380)
T 3iz6_a 57 VCCRTLQGHS------------GKVYSLDWTPEKN--WIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNG-Q 121 (380)
T ss_dssp EEEEEECCCS------------SCEEEEEECTTSS--CEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTS-S
T ss_pred EEeecccccc------------cEEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCC-C
Confidence 4567889997 4599999999874 78889999999999998876 34567789999999985 7
Q ss_pred EEEEEeCCCeEEEEecccccccccccceeccCccc--ceeceeccCchhhhhhcccC-cceeecCCCCCeEEEeeccccc
Q psy12356 123 LFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNC--NCQGLIVPESKREERQSSQN-RREKEDNRRKPAIRLCDMRAAA 199 (400)
Q Consensus 123 ~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~i~lWD~~~~~ 199 (400)
+||+++.|+++++||+.+.............+.++ .+.. +.+.++ ....++++.|++|++||++++.
T Consensus 122 ~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~----------~~~~~~~~~~l~s~s~D~~i~~wd~~~~~ 191 (380)
T 3iz6_a 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASS----------CQYVPDQETRLITGSGDQTCVLWDVTTGQ 191 (380)
T ss_dssp EEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCC----------CBCCSSSSSCEEEECTTSCEEEECTTTCC
T ss_pred EEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEE----------EEEecCCCCEEEEECCCCcEEEEEcCCCc
Confidence 99999999999999997642110000000001100 0111 112232 2335666789999999999865
Q ss_pred ccCcccccccCCCCCCCcccccccccCeEEEEECC-CCcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCC
Q psy12356 200 LCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN-SGRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEEN 270 (400)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp-dg~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~ 270 (400)
.. ..+.. ....+|...|.+++|+| ++++++++ .|++|+|||++....+++.+.+|. +.|+
T Consensus 192 ~~----~~~~~-------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~ 260 (380)
T 3iz6_a 192 RI----SIFGS-------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPD 260 (380)
T ss_dssp EE----EEECC-------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTT
T ss_pred EE----EEeec-------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecC
Confidence 42 12211 01236888999999987 88898875 699999999986666788999995 4678
Q ss_pred Cccc-CCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCE
Q psy12356 271 GQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQET 349 (400)
Q Consensus 271 g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~ 349 (400)
|+++ +++.++++++|++...+.. ..+. .+ ++ ....+...|.+++|||+|++
T Consensus 261 ~~~l~s~s~D~~i~lwd~~~~~~~------~~~~-~~----------~~-----------~~~~~~~~v~~~~~s~~g~~ 312 (380)
T 3iz6_a 261 GQRFGTGSDDGTCRLFDMRTGHQL------QVYN-RE----------PD-----------RNDNELPIVTSVAFSISGRL 312 (380)
T ss_dssp SSEEEEECSSSCEEEEETTTTEEE------EEEC-CC----------CS-----------SSCCSSCSCSEEEECSSSSE
T ss_pred CCeEEEEcCCCeEEEEECCCCcEE------EEec-cc----------cc-----------ccccccCceEEEEECCCCCE
Confidence 8764 5788999999987432110 0110 00 00 00234556899999999999
Q ss_pred EEEe-cCCeEEEEeCccCC
Q psy12356 350 YLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 350 las~-~D~~i~lW~~~~~~ 367 (400)
|+++ .|++|++||+...+
T Consensus 313 l~~g~~dg~i~vwd~~~~~ 331 (380)
T 3iz6_a 313 LFAGYSNGDCYVWDTLLAE 331 (380)
T ss_dssp EEEECTTSCEEEEETTTCC
T ss_pred EEEEECCCCEEEEECCCCc
Confidence 9998 69999999987654
No 67
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=99.96 E-value=1.6e-28 Score=237.92 Aligned_cols=233 Identities=16% Similarity=0.208 Sum_probs=170.0
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|.+++|+|+|++||+|+.|++|++|++...... ........+.+|+ ..|.+++|+|++. .
T Consensus 108 ~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~-----~~~~~~~~~~~h~------------~~v~~~~~~~~~~--~ 168 (354)
T 2pbi_B 108 WVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNE-----NMAAKKKSVAMHT------------NYLSACSFTNSDM--Q 168 (354)
T ss_dssp CCCEEEECTTSSEEEEESTTSEEEEEECCCCTTC-----CSGGGCEEEEECS------------SCEEEEEECSSSS--E
T ss_pred CEEEEEECCCCCEEEEeeCCCCEEEEEEeccccc-----cccccceeeeccC------------CcEEEEEEeCCCC--E
Confidence 4789999999999999999999999998653211 1112234566776 3489999999864 7
Q ss_pred EEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCC-CCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPID-CNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~-~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+++++.|++|+|||++++++ ..|...|.+++|+|+. +++|++++.|++|++||++++.....+..+ ...+
T Consensus 169 l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h-----~~~v 243 (354)
T 2pbi_B 169 ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETH-----ESDV 243 (354)
T ss_dssp EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCC-----SSCE
T ss_pred EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC-----CCCe
Confidence 88899999999999998873 4577889999998852 479999999999999999988432211100 0111
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
..+ ...|++...++++.|++|++||++..... ..+..+ .+...+.+++|+|+|++|
T Consensus 244 ~~v----------~~~p~~~~l~s~s~D~~v~lwd~~~~~~~----~~~~~~----------~~~~~~~~~~~s~~g~~l 299 (354)
T 2pbi_B 244 NSV----------RYYPSGDAFASGSDDATCRLYDLRADREV----AIYSKE----------SIIFGASSVDFSLSGRLL 299 (354)
T ss_dssp EEE----------EECTTSSEEEEEETTSCEEEEETTTTEEE----EEECCT----------TCCSCEEEEEECTTSSEE
T ss_pred EEE----------EEeCCCCEEEEEeCCCeEEEEECCCCcEE----EEEcCC----------CcccceeEEEEeCCCCEE
Confidence 222 23356666777788999999999875431 111110 223468999999999999
Q ss_pred EEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCc
Q psy12356 240 ISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQ 286 (400)
Q Consensus 240 as~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~ 286 (400)
+++ .|++|+|||+.++ .++..+.+|. ++|+|+++ +++.++++++|+
T Consensus 300 ~~g~~d~~i~vwd~~~~-~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 300 FAGYNDYTINVWDVLKG-SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp EEEETTSCEEEEETTTC-SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred EEEECCCcEEEEECCCC-ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 975 6899999999876 4678888885 45777754 466777777763
No 68
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.6e-29 Score=242.97 Aligned_cols=277 Identities=10% Similarity=0.129 Sum_probs=193.7
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|||++||+|+.||+|+|||+.+.. ...+.+..+.+|.. .|.+++|+|++ +.
T Consensus 68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~-------~~~~~~~~~~~h~~------------~v~~~~~~~~~-~~ 127 (416)
T 2pm9_A 68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEAN-------NAINSMARFSNHSS------------SVKTVKFNAKQ-DN 127 (416)
T ss_dssp SCEEEEEECSSSSCEEEEESSSCEEEECCSSTT-------SCCCEEEECCCSSS------------CCCEEEECSSS-TT
T ss_pred CceEEEEECCCCCeEEEEccCCeEEEeeccccc-------ccccchhhccCCcc------------ceEEEEEcCCC-CC
Confidence 468999999999999999999999999997521 01224567778873 49999999973 23
Q ss_pred eEEEeeCCCeEEEEEccCCC------c-------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN------M-------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKC 150 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~------~-------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~ 150 (400)
.+++++.|++|++||+.+++ . ..|...|.+++|+|+++.+|++++.|++|++||++++.........
T Consensus 128 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~ 207 (416)
T 2pm9_A 128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYT 207 (416)
T ss_dssp BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCC
T ss_pred EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEecc
Confidence 67778899999999998765 1 2356789999999986689999999999999999987542211100
Q ss_pred ecc-CcccceeceeccCchhhhhhcccCc-ceeecCCCCC---eEEEeecccccccCcccccccCCCCCCCccccc-ccc
Q psy12356 151 LIE-GTNCNCQGLIVPESKREERQSSQNR-REKEDNRRKP---AIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS-EII 224 (400)
Q Consensus 151 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg---~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~ 224 (400)
... .....+..+.+ .+++ ...++++.|+ .|++||++.+... .. .+. +|.
T Consensus 208 ~~~~~~~~~v~~~~~----------~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~---~~------------~~~~~~~ 262 (416)
T 2pm9_A 208 SPNSGIKQQLSVVEW----------HPKNSTRVATATGSDNDPSILIWDLRNANTP---LQ------------TLNQGHQ 262 (416)
T ss_dssp CCSSCCCCCEEEEEE----------CSSCTTEEEEEECCSSSCCCCEEETTSTTSC---SB------------CCCSCCS
T ss_pred ccccccCCceEEEEE----------CCCCCCEEEEEECCCCCceEEEEeCCCCCCC---cE------------EeecCcc
Confidence 000 00111222222 3443 3455556677 9999999875321 11 133 677
Q ss_pred cCeEEEEECC-CCcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCC-cc-cCCCCCceeecCccccccee
Q psy12356 225 SSISDVKISN-SGRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENG-QL-RDPSNITALRVPQIKPIELT 293 (400)
Q Consensus 225 ~~V~~v~fSp-dg~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g-~~-~~~~~~~~i~l~~~~~~~~~ 293 (400)
..|.+++|+| ++++|+++ .|++|+|||++++ .++..+.+|. +.+++ .+ ++++.++.+++|++......
T Consensus 263 ~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~ 341 (416)
T 2pm9_A 263 KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA-EQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNT 341 (416)
T ss_dssp SCEEEEEECSSCSSCEEEEESSSEEEEECSSSC-CEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCS
T ss_pred CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC-ccceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCC
Confidence 8999999999 89999875 6899999999986 4788888885 46787 44 46888999999998644321
Q ss_pred eccC---------cccee-------------------ccccccceEEEEEcCCCcEEeecc
Q psy12356 294 VEAS---------PRRIF-------------------ANAHTYHINSISVNSDQLTVEASP 326 (400)
Q Consensus 294 ~~~~---------~~~~~-------------------~~~~~~~i~~i~~s~dg~~~~~~~ 326 (400)
.... ....+ ...|...+..++|+|||+++++..
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~ 402 (416)
T 2pm9_A 342 LDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITP 402 (416)
T ss_dssp SCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCT
T ss_pred cccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeC
Confidence 1000 00000 001556678999999999998655
No 69
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.96 E-value=2.6e-29 Score=246.88 Aligned_cols=263 Identities=11% Similarity=0.003 Sum_probs=153.2
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe-------
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR------- 78 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp------- 78 (400)
+....+++++++||+|+.|++|+|||+.+++. ....++.++.+|+ +.|++|+|+|
T Consensus 92 ~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~------~~~~~~~~~~gH~------------~~v~~v~~~p~~~~~~~ 153 (393)
T 4gq1_A 92 GNVNSSPVYSLFLACVCQDNTVRLIITKNETI------ITQHVLGGKSGHH------------NFVNDIDIADVYSADNR 153 (393)
T ss_dssp -----CCEEEEEEEEEETTSCEEEEEEETTEE------EEEEEECTTTSCS------------SCEEEEEEEEEECTTCS
T ss_pred cceeecCCCCCEEEEEeCCCcEEEEECCCCcc------ceeeeecccCCCC------------CceEEEEEccccccccC
Confidence 34455677889999999999999999876421 1122345677887 4599999998
Q ss_pred -ccCCceEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceecc
Q psy12356 79 -RKNQAHFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIE 153 (400)
Q Consensus 79 -~~~~~~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~ 153 (400)
++ ..++++|.|++|||||+.++. +..|...|.+++|+|++.++|++++.|++|++||++++............
T Consensus 154 ~d~--~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~ 231 (393)
T 4gq1_A 154 LAE--QVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELV 231 (393)
T ss_dssp EEE--EEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------C
T ss_pred CCC--CEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCc
Confidence 33 255668899999999997765 24567789999999987678999999999999999988532211000000
Q ss_pred Ccc-------cceeceeccCchhhh---hh-cccCcceeecCCCCCeEEEeecccccccCcccccccCCC--------CC
Q psy12356 154 GTN-------CNCQGLIVPESKREE---RQ-SSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPE--------DP 214 (400)
Q Consensus 154 ~~~-------~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~--------~~ 214 (400)
... ..........++... +. ..+++...++++.|+++++||++.+.... .+..+. .+
T Consensus 232 ~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~----~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 232 KNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN----EISDSTMKLGPKNLLP 307 (393)
T ss_dssp SCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----------------------CCSC
T ss_pred ccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc----eEeeecCccccEEEcc
Confidence 000 000000000000011 11 12566666777899999999998754321 111000 00
Q ss_pred CCcccccccccCeEEEEECC--CCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccc
Q psy12356 215 TNKSFFSEIISSISDVKISN--SGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIE 291 (400)
Q Consensus 215 ~~~~~~~~h~~~V~~v~fSp--dg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~ 291 (400)
..+ ....+ .....+.|+| ++.+++++ .|++|+|||+.++. ++..+
T Consensus 308 ~~~-~~~~~-~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~-~~~~~----------------------------- 355 (393)
T 4gq1_A 308 NVQ-GISLF-PSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKD-SNSIP----------------------------- 355 (393)
T ss_dssp SEE-EECSS-CCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTT-CCEEE-----------------------------
T ss_pred ccc-ccccc-CcceeEEEccCCCCEEEEEECCCCEEEEEECCCCc-EEEEe-----------------------------
Confidence 000 00111 1222333443 33355554 57888888887642 21111
Q ss_pred eeeccCccceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEecCCeEEEEeCc
Q psy12356 292 LTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSADDLRINLWHLE 364 (400)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~~D~~i~lW~~~ 364 (400)
.+|...|.+|+|||||++||++.++.+.+|++.
T Consensus 356 ----------------------------------------~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 356 ----------------------------------------IQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp ----------------------------------------EECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred ----------------------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 145667999999999999999876677788765
No 70
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=99.96 E-value=3.5e-28 Score=231.89 Aligned_cols=232 Identities=12% Similarity=0.162 Sum_probs=171.1
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|||++||+|+.|++|+|||+.++ +.++.+.+|.. .|.+++|+|++.
T Consensus 66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~-----------~~~~~~~~h~~------------~v~~~~~~~~~~-- 120 (319)
T 3frx_A 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATG-----------ETYQRFVGHKS------------DVMSVDIDKKAS-- 120 (319)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----------EEEEEEECCSS------------CEEEEEECTTSC--
T ss_pred ccEEEEEECCCCCEEEEEeCCCEEEEEECCCC-----------CeeEEEccCCC------------cEEEEEEcCCCC--
Confidence 46899999999999999999999999999753 34667889974 499999999864
Q ss_pred eEEEeeCCCeEEEEEccCCC---cccccccEEEEEEecCC-----CCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN---MEELNEVITAAEFHPID-----CNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~---~~~~~~~V~sv~f~p~~-----~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
.+++++.|++|+|||++... +..|...|.+++|+|.. ..++++++.|++|++||+++......+..+
T Consensus 121 ~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h----- 195 (319)
T 3frx_A 121 MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGH----- 195 (319)
T ss_dssp EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCC-----
T ss_pred EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCC-----
Confidence 77788999999999997654 34567789999999853 347999999999999999887432211100
Q ss_pred ccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
...+..+ ..+|++...++++.||+|++||++.+... ..+ .+...|.+++|+|+
T Consensus 196 ~~~v~~~----------~~sp~g~~l~s~~~dg~i~iwd~~~~~~~----~~~-------------~~~~~v~~~~~sp~ 248 (319)
T 3frx_A 196 NSNINTL----------TASPDGTLIASAGKDGEIMLWNLAAKKAM----YTL-------------SAQDEVFSLAFSPN 248 (319)
T ss_dssp CSCEEEE----------EECTTSSEEEEEETTCEEEEEETTTTEEE----EEE-------------ECCSCEEEEEECSS
T ss_pred CCcEEEE----------EEcCCCCEEEEEeCCCeEEEEECCCCcEE----EEe-------------cCCCcEEEEEEcCC
Confidence 0112222 23467767777788999999999876532 111 12367999999999
Q ss_pred CcEEEEecCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEEE
Q psy12356 236 GRYMISRDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISV 315 (400)
Q Consensus 236 g~~las~~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~ 315 (400)
|++|+++.+..+++|++... ..+..+..+.. + ....|...+.+++|
T Consensus 249 ~~~la~~~~~~i~v~~~~~~-~~~~~~~~~~~----------------------------~-----~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 249 RYWLAAATATGIKVFSLDPQ-YLVDDLRPEFA----------------------------G-----YSKAAEPHAVSLAW 294 (319)
T ss_dssp SSEEEEEETTEEEEEEETTE-EEEEEECCCCT----------------------------T-----CCGGGCCCEEEEEE
T ss_pred CCEEEEEcCCCcEEEEeCcC-eeeeccCcccc----------------------------c-----cccCcCcceeEEEE
Confidence 99999887888999999864 23444432210 0 01235566889999
Q ss_pred cCCCcEEeecc
Q psy12356 316 NSDQLTVEASP 326 (400)
Q Consensus 316 s~dg~~~~~~~ 326 (400)
+|||++|++.+
T Consensus 295 spdg~~l~sg~ 305 (319)
T 3frx_A 295 SADGQTLFAGY 305 (319)
T ss_dssp CTTSSEEEEEE
T ss_pred CCCCCEEEEee
Confidence 99999987654
No 71
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=1.3e-28 Score=241.62 Aligned_cols=293 Identities=10% Similarity=0.074 Sum_probs=192.3
Q ss_pred EEEEEECCCCCe-EEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe-ccCCc
Q psy12356 6 REASQRFSDGEL-LATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR-RKNQA 83 (400)
Q Consensus 6 v~~v~fspdG~~-Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp-~~~~~ 83 (400)
...++++|+... +++++.||.|+||++...... .+.+..+.+|. ..|.+++|+| +++
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~-------~~~~~~~~~h~------------~~V~~~~~~p~~~~-- 95 (402)
T 2aq5_A 37 SGFCAVNPKFMALICEASGGGAFLVLPLGKTGRV-------DKNVPLVCGHT------------APVLDIAWCPHNDN-- 95 (402)
T ss_dssp SCSEEECSSEEEEEBCCSSSCCEEEEETTCCEEC-------CTTCCCBCCCS------------SCEEEEEECTTCTT--
T ss_pred CCcEEECCCeEEEEEEEcCCCEEEEEECccCCCC-------CCCCceEecCC------------CCEEEEEeCCCCCC--
Confidence 446888998754 446889999999998653210 01234567787 4599999999 543
Q ss_pred eEEEeeCCCeEEEEEccCCC-----------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceec
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-----------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLI 152 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-----------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~ 152 (400)
.+++++.|++|+|||+.++. +..|...|++++|+|++.++|++++.|++|++||++++........ .
T Consensus 96 ~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~ 173 (402)
T 2aq5_A 96 VIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP--D 173 (402)
T ss_dssp EEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECT--T
T ss_pred EEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEec--C
Confidence 77788999999999998763 2346778999999998667999999999999999998843221100 0
Q ss_pred cCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccC-eEEEE
Q psy12356 153 EGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISS-ISDVK 231 (400)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~v~ 231 (400)
.. ...+..+.+ .+++...++++.||.|++||++++... ..+ ..+|.+. +.+++
T Consensus 174 ~~-~~~v~~~~~----------~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~-----------~~~~~~~~~~~~~ 227 (402)
T 2aq5_A 174 VH-PDTIYSVDW----------SRDGALICTSCRDKRVRVIEPRKGTVV----AEK-----------DRPHEGTRPVHAV 227 (402)
T ss_dssp TC-CSCEEEEEE----------CTTSSCEEEEETTSEEEEEETTTTEEE----EEE-----------ECSSCSSSCCEEE
T ss_pred CC-CCceEEEEE----------CCCCCEEEEEecCCcEEEEeCCCCcee----eee-----------ccCCCCCcceEEE
Confidence 00 111222222 356656666778999999999976532 111 0245454 88999
Q ss_pred ECCCCcEEEEe----cCCeEEEEeCCCCCCceeeec-CCC-------cCCCCccc--CCCCCceeecCcccccceeeccC
Q psy12356 232 ISNSGRYMISR----DYLCVKVWDLHMESRPVETYP-THT-------KEENGQLR--DPSNITALRVPQIKPIELTVEAS 297 (400)
Q Consensus 232 fSpdg~~las~----~D~tIklWD~~~~~~~l~~~~-~h~-------~~~~g~~~--~~~~~~~i~l~~~~~~~~~~~~~ 297 (400)
|+|+|++|+++ .|++|++||++++..++..+. .|. +.++|+++ +++.++.|++|++...+..
T Consensus 228 ~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~---- 303 (402)
T 2aq5_A 228 FVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPF---- 303 (402)
T ss_dssp ECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTC----
T ss_pred EcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcc----
Confidence 99999999875 689999999998755444432 121 23444432 1233444444443211100
Q ss_pred ccceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEecCCeEEEEeCccCCeeEEEEeecC
Q psy12356 298 PRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSADDLRINLWHLEITDQSFNIVDIKP 377 (400)
Q Consensus 298 ~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~~D~~i~lW~~~~~~~~~~~~~~~~ 377 (400)
+..+ ....|...|.+++|+||++++++ .|+.+++|++.. ..+-++...-|
T Consensus 304 ------------~~~l----------------~~~~~~~~v~~~~~sp~~~~~~s-~~~~~~~~~l~~-~~~~~i~~~~p 353 (402)
T 2aq5_A 304 ------------LHYL----------------SMFSSKESQRGMGYMPKRGLEVN-KCEIARFYKLHE-RKCEPIAMTVP 353 (402)
T ss_dssp ------------EEEE----------------EEECCSSCCSEEEECCGGGSCGG-GTEEEEEEEEET-TEEEEEEEECC
T ss_pred ------------eEee----------------cccccCCcccceEEeccccccee-cceeEEEEEcCC-CcEEEEEEEcc
Confidence 0000 00125688999999999998876 455999999985 44556666666
Q ss_pred Cccc
Q psy12356 378 TNME 381 (400)
Q Consensus 378 ~~~~ 381 (400)
.+-+
T Consensus 354 r~~~ 357 (402)
T 2aq5_A 354 RKSD 357 (402)
T ss_dssp CCCS
T ss_pred cchh
Confidence 6543
No 72
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.96 E-value=3.5e-28 Score=238.83 Aligned_cols=267 Identities=12% Similarity=0.131 Sum_probs=181.0
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeec-cCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQS-HEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~-h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
+.+++|++ +.+++++.||+|+|||..++. ....+.. |. ..|.+++|+|++. .
T Consensus 96 ~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~-----------~~~~~~~~~~------------~~v~~v~~s~~~~--~ 148 (401)
T 4aez_A 96 LNLLDWSN--LNVVAVALERNVYVWNADSGS-----------VSALAETDES------------TYVASVKWSHDGS--F 148 (401)
T ss_dssp CBCEEECT--TSEEEEEETTEEEEEETTTCC-----------EEEEEECCTT------------CCEEEEEECTTSS--E
T ss_pred EEEEeecC--CCEEEEECCCeEEEeeCCCCc-----------EeEeeecCCC------------CCEEEEEECCCCC--E
Confidence 44567775 457788899999999998643 2233333 44 4599999999864 6
Q ss_pred EEEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc-cccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL-CDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~-~~~~~~~~~~~~~~~~ 159 (400)
+++++.|++|+|||+.+++ +..|...|.+++|++ ++|++++.|++|++||++.... ... +... ...+
T Consensus 149 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~----~~~~-~~~v 220 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGT----LQGH-SSEV 220 (401)
T ss_dssp EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEE----EECC-SSCE
T ss_pred EEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeE----EcCC-CCCe
Confidence 7778899999999998876 345778899999964 5899999999999999985421 111 0000 0111
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCc-E
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGR-Y 238 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~-~ 238 (400)
..+. ..+++...++++.||.|++||++++... .. +.+|...|.+++|+|++. +
T Consensus 221 ~~~~----------~~~~~~~l~s~~~d~~v~iwd~~~~~~~----~~------------~~~~~~~v~~~~~~p~~~~l 274 (401)
T 4aez_A 221 CGLA----------WRSDGLQLASGGNDNVVQIWDARSSIPK----FT------------KTNHNAAVKAVAWCPWQSNL 274 (401)
T ss_dssp EEEE----------ECTTSSEEEEEETTSCEEEEETTCSSEE----EE------------ECCCSSCCCEEEECTTSTTE
T ss_pred eEEE----------EcCCCCEEEEEeCCCeEEEccCCCCCcc----EE------------ecCCcceEEEEEECCCCCCE
Confidence 2222 2356666667778999999999875421 11 235778999999999876 5
Q ss_pred EEEe---cCCeEEEEeCCCCCCceeeecCCC------cCCCCccc-C--CCCCceeecCcccccceeeccCccceecccc
Q psy12356 239 MISR---DYLCVKVWDLHMESRPVETYPTHT------KEENGQLR-D--PSNITALRVPQIKPIELTVEASPRRIFANAH 306 (400)
Q Consensus 239 las~---~D~tIklWD~~~~~~~l~~~~~h~------~~~~g~~~-~--~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 306 (400)
++++ .|++|++||++++ .++..+..+. +.++|+++ + ++.++.+++|++...+.
T Consensus 275 l~~~~gs~d~~i~i~d~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~-------------- 339 (401)
T 4aez_A 275 LATGGGTMDKQIHFWNAATG-ARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGL-------------- 339 (401)
T ss_dssp EEEECCTTTCEEEEEETTTC-CEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEE--------------
T ss_pred EEEecCCCCCEEEEEECCCC-CEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccc--------------
Confidence 5554 3899999999986 4666665332 23444432 1 22445555544311000
Q ss_pred ccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 307 TYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 307 ~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
.... ...+|...|.+++|+|||++|+++ .|++|++|++..++
T Consensus 340 ---~~~~----------------~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~ 382 (401)
T 4aez_A 340 ---TKQV----------------DIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGD 382 (401)
T ss_dssp ---EEEE----------------EEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC--
T ss_pred ---eeEE----------------EecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCc
Confidence 0000 014799999999999999999997 69999999998655
No 73
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.96 E-value=1e-27 Score=238.44 Aligned_cols=284 Identities=10% Similarity=0.138 Sum_probs=204.7
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
+.+ ++++|++||+|+.||+|+|||+.++ +.+..+.+|.. .|.+++|++ ..+
T Consensus 122 ~~~--~~~~g~~l~sg~~dg~i~vwd~~~~-----------~~~~~~~~h~~------------~v~~~~~~~----~~l 172 (445)
T 2ovr_B 122 ITC--LQFCGNRIVSGSDDNTLKVWSAVTG-----------KCLRTLVGHTG------------GVWSSQMRD----NII 172 (445)
T ss_dssp EEE--EEEETTEEEEEETTSCEEEEETTTC-----------CEEEECCCCSS------------CEEEEEEET----TEE
T ss_pred EEE--EEEcCCEEEEEECCCcEEEEECCCC-----------cEEEEEcCCCC------------CEEEEEecC----CEE
Confidence 455 4557999999999999999999754 34567888874 489999973 278
Q ss_pred EEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceec
Q psy12356 86 LLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQG 161 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
++++.|++|++||+++++ +..|...|.+++|++ +.+++++.|++|++||++++........ .. ..+..
T Consensus 173 ~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~----~~-~~v~~ 244 (445)
T 2ovr_B 173 ISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMG----HV-AAVRC 244 (445)
T ss_dssp EEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEEC----CS-SCEEE
T ss_pred EEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcC----Cc-ccEEE
Confidence 888999999999998886 345778899999975 4799999999999999998743221110 00 01111
Q ss_pred eeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEE
Q psy12356 162 LIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMIS 241 (400)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las 241 (400)
+. .++...++++.||.|++||++++... .. +.+|...|.+++| +++++++
T Consensus 245 ~~------------~~~~~l~~~~~dg~i~iwd~~~~~~~----~~------------~~~~~~~v~~~~~--~~~~l~~ 294 (445)
T 2ovr_B 245 VQ------------YDGRRVVSGAYDFMVKVWDPETETCL----HT------------LQGHTNRVYSLQF--DGIHVVS 294 (445)
T ss_dssp EE------------ECSSCEEEEETTSCEEEEEGGGTEEE----EE------------ECCCSSCEEEEEE--CSSEEEE
T ss_pred EE------------ECCCEEEEEcCCCEEEEEECCCCcEe----EE------------ecCCCCceEEEEE--CCCEEEE
Confidence 11 12333455667999999999876432 11 2367789999999 8888886
Q ss_pred -ecCCeEEEEeCCCCCCceeeecCCCc-----CCCCcc-cCCCCCceeecCcccccceeeccCccceec--cccccceEE
Q psy12356 242 -RDYLCVKVWDLHMESRPVETYPTHTK-----EENGQL-RDPSNITALRVPQIKPIELTVEASPRRIFA--NAHTYHINS 312 (400)
Q Consensus 242 -~~D~tIklWD~~~~~~~l~~~~~h~~-----~~~g~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~--~~~~~~i~~ 312 (400)
+.|++|++||++++ .++..+.+|.. .+++.+ ++++.++.+++|++...+.. ..+. .+|...|.+
T Consensus 295 ~~~d~~i~i~d~~~~-~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~v~~ 367 (445)
T 2ovr_B 295 GSLDTSIRVWDVETG-NCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL------QTLQGPNKHQSAVTC 367 (445)
T ss_dssp EETTSCEEEEETTTC-CEEEEECCCCSCEEEEEEETTEEEEEETTSCEEEEETTTCCEE------EEECSTTSCSSCEEE
T ss_pred EeCCCeEEEEECCCC-CEEEEEcCCcccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEE------EEEccCCCCCCCEEE
Confidence 46999999999986 47888888852 234444 45678899999987543321 1221 237788999
Q ss_pred EEEcCCCcEEeeccc----ch-----------h----hcccccceeEEEEccCCCEEEEe-cCCe----EEEEeCcc
Q psy12356 313 ISVNSDQLTVEASPR----GI-----------F----ADAHTYHISSTSVNSDQETYLSA-DDLR----INLWHLEI 365 (400)
Q Consensus 313 i~~s~dg~~~~~~~~----~~-----------~----~~gh~~~V~~i~fspDg~~las~-~D~~----i~lW~~~~ 365 (400)
++|+ ++++++++. ++ + ..+|...|.+++|+|+|..||++ .|++ |.+||++.
T Consensus 368 ~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 368 LQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp EEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred EEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 9995 456654331 11 1 13788999999999999999997 6887 99999874
No 74
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=99.96 E-value=2.6e-28 Score=235.30 Aligned_cols=250 Identities=12% Similarity=0.175 Sum_probs=170.5
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+|+|+|||++||+|+.|++|+||+.... ..+.+.++.+|+. .|.+++|+|+++
T Consensus 62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~---------~~~~~~~~~~h~~------------~v~~v~~sp~~~-- 118 (345)
T 3fm0_A 62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQD---------DFECVTTLEGHEN------------EVKSVAWAPSGN-- 118 (345)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEECCC----------EEEEEEECCCSS------------CEEEEEECTTSS--
T ss_pred CcEEEEEECCCCCEEEEEECCCcEEEEEccCC---------CeEEEEEccCCCC------------CceEEEEeCCCC--
Confidence 46899999999999999999999999998753 2345667888874 499999999874
Q ss_pred eEEEeeCCCeEEEEEccCCC-------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
.+++++.|++|+|||++++. +..|...|.+++|+|++ .+|++++.|++|++||++++... +...+.+
T Consensus 119 ~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~~~-----~~~~~~~ 192 (345)
T 3fm0_A 119 LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDDWV-----CCATLEG 192 (345)
T ss_dssp EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTEEE-----EEEEECC
T ss_pred EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCCEE-----EEEEecC
Confidence 77788999999999998763 23567789999999985 78999999999999999876321 1111111
Q ss_pred --cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccc-ccccCeEEEEEC
Q psy12356 157 --CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS-EIISSISDVKIS 233 (400)
Q Consensus 157 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~fS 233 (400)
..+..+.+ .|++...++++.|++|++||.+........ ..............+. .|...|.+++|+
T Consensus 193 h~~~v~~l~~----------sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~~v~~~ 261 (345)
T 3fm0_A 193 HESTVWSLAF----------DPSGQRLASCSDDRTVRIWRQYLPGNEQGV-ACSGSDPSWKCICTLSGFHSRTIYDIAWC 261 (345)
T ss_dssp CSSCEEEEEE----------CTTSSEEEEEETTSCEEEEEEECTTCTTCC-CCC---CEEEEEEEECSSCSSCEEEEEEC
T ss_pred CCCceEEEEE----------CCCCCEEEEEeCCCeEEEeccccCCCCccc-eeeccCCccceeEEecCCCCCcEEEEEEe
Confidence 12223333 466666777788999999997643221100 0000000000000012 277899999999
Q ss_pred CCCcEEEE-ecCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEE
Q psy12356 234 NSGRYMIS-RDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINS 312 (400)
Q Consensus 234 pdg~~las-~~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 312 (400)
|++..|++ +.|++|++||......+... ...+. .....+|...|++
T Consensus 262 ~~~~~l~s~~~d~~i~vw~~~~~~~~~~~-----------------~~~~~----------------~~~~~~h~~~V~~ 308 (345)
T 3fm0_A 262 QLTGALATACGDDAIRVFQEDPNSDPQQP-----------------TFSLT----------------AHLHQAHSQDVNC 308 (345)
T ss_dssp TTTCCEEEEETTSCEEEEEECTTSCTTSC-----------------CEEEE----------------EEETTSSSSCEEE
T ss_pred cCCCEEEEEeCCCeEEEEEeCCCCCccee-----------------eEEEE----------------eeecccccCcEeE
Confidence 99999986 57999999998864321100 00000 0012468889999
Q ss_pred EEEcCCCc-EEeecc
Q psy12356 313 ISVNSDQL-TVEASP 326 (400)
Q Consensus 313 i~~s~dg~-~~~~~~ 326 (400)
++|+|++. +|++.+
T Consensus 309 v~~~p~~~~~laS~s 323 (345)
T 3fm0_A 309 VAWNPKEPGLLASCS 323 (345)
T ss_dssp EEECSSSTTEEEEEE
T ss_pred eEEeCCCceEEEEcC
Confidence 99999974 776543
No 75
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-28 Score=235.60 Aligned_cols=242 Identities=12% Similarity=0.114 Sum_probs=157.2
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++|+|+|+|++||+|+.|++|+|||+.+.... ....+++..+.+|+. .|.+|+|+|+++
T Consensus 59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~----~~~~~~~~~~~~h~~------------~V~~v~~sp~g~-- 120 (330)
T 2hes_X 59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR----TFEMDLLAIIEGHEN------------EVKGVAWSNDGY-- 120 (330)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEEC-----------CCCEEEEEEC----------------CEEEEEECTTSC--
T ss_pred CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc----cccceeEEEEcCCCC------------cEEEEEECCCCC--
Confidence 36899999999999999999999999998642100 012345667888873 499999999874
Q ss_pred eEEEeeCCCeEEEEEccC-CC-------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 84 HFLLSTNDQSFNIVDIKP-TN-------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~-~~-------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
.+++++.|++|+|||+.. +. +..|...|++++|+|++ .+|++++.|++|++||++++.. .++..+.
T Consensus 121 ~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~l~s~s~D~~i~iW~~~~~~~-----~~~~~~~ 194 (330)
T 2hes_X 121 YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSE-ALLASSSYDDTVRIWKDYDDDW-----ECVAVLN 194 (330)
T ss_dssp EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSS-SEEEEEETTSCEEEEEEETTEE-----EEEEEEC
T ss_pred EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCCe-----eEEEEcc
Confidence 677789999999999943 21 24577889999999985 7999999999999999876521 1111111
Q ss_pred c--cceeceeccCchhhhhhcccC--cceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccc-ccccCeEEE
Q psy12356 156 N--CNCQGLIVPESKREERQSSQN--RREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS-EIISSISDV 230 (400)
Q Consensus 156 ~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v 230 (400)
. ..++.+.++ ++ +...++++.|++|++||++.+..... ..+. ....+. .|...|.+|
T Consensus 195 ~h~~~v~~~~~~----------~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~--~~~~------~~~~~~~~h~~~v~~v 256 (330)
T 2hes_X 195 GHEGTVWSSDFD----------KTEGVFRLCSGSDDSTVRVWKYMGDDEDDQ--QEWV------CEAILPDVHKRQVYNV 256 (330)
T ss_dssp CCSSCEEEEEEC----------CSSSSCEEEEEETTSCEEEEEEEEECTTSC--EEEE------EEEECCSCCSSCEEEE
T ss_pred CCCCcEEEEEec----------CCCCeeEEEEEeCCCeEEEEEecCCCcccc--ceeE------EeeecccccccceEEE
Confidence 1 122233332 43 44566777899999999986532110 0000 000112 377899999
Q ss_pred EECCCCcEEEEecCCeEEEEeCCCCC-Ccee-eecCCC--------cCC--CCccc-CCCCCceeecCcc
Q psy12356 231 KISNSGRYMISRDYLCVKVWDLHMES-RPVE-TYPTHT--------KEE--NGQLR-DPSNITALRVPQI 287 (400)
Q Consensus 231 ~fSpdg~~las~~D~tIklWD~~~~~-~~l~-~~~~h~--------~~~--~g~~~-~~~~~~~i~l~~~ 287 (400)
+|+|++.+++++.|++|+|||..++. .++. .+.+|. +.+ ++.++ +++.+++|++|++
T Consensus 257 ~~s~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~ 326 (330)
T 2hes_X 257 AWGFNGLIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL 326 (330)
T ss_dssp EECTTSCEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred EEcCCCEEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence 99988754445689999999998652 1222 234553 234 45543 4677778877765
No 76
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.96 E-value=4.1e-28 Score=232.31 Aligned_cols=275 Identities=12% Similarity=0.083 Sum_probs=186.4
Q ss_pred eeEEEEEECCC---CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEecc
Q psy12356 4 YMREASQRFSD---GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRK 80 (400)
Q Consensus 4 ~~v~~v~fspd---G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~ 80 (400)
..|++++|+|+ |++||+|+.||+|+|||+.+.. ......+.+|. ..|.+++|+|++
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~h~------------~~v~~~~~~~~~ 98 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG---------QTIPKAQQMHT------------GPVLDVCWSDDG 98 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS---------CEEEEEEEECS------------SCEEEEEECTTS
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC---------ceeEEEecccc------------CCEEEEEECcCC
Confidence 57999999999 6999999999999999998521 12335677887 359999999976
Q ss_pred CCceEEEeeCCCeEEEEEccCCCc---ccccccEEEEEE--ecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 81 NQAHFLLSTNDQSFNIVDIKPTNM---EELNEVITAAEF--HPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 81 ~~~~~l~ss~D~tI~lWd~~~~~~---~~~~~~V~sv~f--~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
+ .+++++.|++|++||+++++. ..|...|++++| +|++ ++|++++.|++|++||++++......... .
T Consensus 99 ~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~----~ 171 (368)
T 3mmy_A 99 S--KVFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNY-SCVMTGSWDKTLKFWDTRSSNPMMVLQLP----E 171 (368)
T ss_dssp S--EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEEEECSSC-EEEEEEETTSEEEEECSSCSSCSEEEECS----S
T ss_pred C--EEEEEcCCCcEEEEEcCCCCceeeccccCceEEEEEEeCCCC-CEEEEccCCCcEEEEECCCCcEEEEEecC----C
Confidence 4 677889999999999998873 356788999999 8864 78999999999999999988543211100 0
Q ss_pred ccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
....... .... ...++.++.+++||++...... .... ..+...+..+++.++
T Consensus 172 --~~~~~~~----------~~~~--~~~~~~~~~i~~~~~~~~~~~~---~~~~-----------~~~~~~~~~~~~~~~ 223 (368)
T 3mmy_A 172 --RCYCADV----------IYPM--AVVATAERGLIVYQLENQPSEF---RRIE-----------SPLKHQHRCVAIFKD 223 (368)
T ss_dssp --CEEEEEE----------ETTE--EEEEEGGGCEEEEECSSSCEEE---EECC-----------CSCSSCEEEEEEEEC
T ss_pred --CceEEEe----------cCCe--eEEEeCCCcEEEEEeccccchh---hhcc-----------ccccCCCceEEEccc
Confidence 0000000 1112 2223358899999998643211 1111 012234555665554
Q ss_pred CcE----EEE-ecCCeEEEEeCCCCC--CceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceecccccc
Q psy12356 236 GRY----MIS-RDYLCVKVWDLHMES--RPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTY 308 (400)
Q Consensus 236 g~~----las-~~D~tIklWD~~~~~--~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~ 308 (400)
+.. +++ +.|+.|++||++... .++..+.+|..... .....+|.+
T Consensus 224 ~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~ 274 (368)
T 3mmy_A 224 KQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGT-----------------------------NTSAPQDIY 274 (368)
T ss_dssp TTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC---------------------------------CCCEEEC
T ss_pred CCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccc-----------------------------ccccccccc
Confidence 442 554 679999999999763 24556666631100 000135677
Q ss_pred ceEEEEEcCCCcEEeeccc----chh----------hcccccceeEEEEccCCCEEEEe-cCCeEEEEeC
Q psy12356 309 HINSISVNSDQLTVEASPR----GIF----------ADAHTYHISSTSVNSDQETYLSA-DDLRINLWHL 363 (400)
Q Consensus 309 ~i~~i~~s~dg~~~~~~~~----~~~----------~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~ 363 (400)
.|.+++|+|||+++++.+. ++| ..+|...|.+++|||||++||++ .|+..+.|++
T Consensus 275 ~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 275 AVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp CEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred ceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence 8999999999988876432 111 14899999999999999999996 5655444443
No 77
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=4.1e-28 Score=257.95 Aligned_cols=261 Identities=13% Similarity=0.164 Sum_probs=183.7
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
+.|++++|+|||++||+|+.||+|+|||+.++ ..+....+.+|. ..|.+++|+|+..+.
T Consensus 10 ~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~---------~~~~~~~l~~h~------------~~V~~l~~s~~~~~~ 68 (753)
T 3jro_A 10 ELIHDAVLDYYGKRLATCSSDKTIKIFEVEGE---------THKLIDTLTGHE------------GPVWRVDWAHPKFGT 68 (753)
T ss_dssp CCEEEECCCSSSCCEEEEETTTEEEEEEEETT---------EEEEEEEECCCS------------SCEEEEEECCTTSCS
T ss_pred ceeEEEEECCCCCeEEEEECCCcEEEEecCCC---------CCccceeccCCc------------CceEEEEecCCCCCC
Confidence 57999999999999999999999999998742 234566788887 359999999873234
Q ss_pred eEEEeeCCCeEEEEEccCCC------cccccccEEEEEEecCC-CCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN------MEELNEVITAAEFHPID-CNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~------~~~~~~~V~sv~f~p~~-~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
.+++++.|++|++||+.++. ...|...|++++|+|++ ++++++++.||+|++||++++...... ..... .
T Consensus 69 ~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~--~~~~~-~ 145 (753)
T 3jro_A 69 ILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPI--IIDAH-A 145 (753)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCE--EEECC-S
T ss_pred EEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCccee--EeecC-C
Confidence 77788999999999998875 23467789999999972 478999999999999999887321110 00000 1
Q ss_pred cceeceeccCch---hhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 157 CNCQGLIVPESK---REERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 157 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
..+..+.+.+.. .......+++...++++.||+|++||++.+....... ..+.+|...|.+++|+
T Consensus 146 ~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~------------~~~~~h~~~V~~l~~s 213 (753)
T 3jro_A 146 IGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLE------------STLEGHSDWVRDVAWS 213 (753)
T ss_dssp SCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEE------------EEECCCSSCEEEEEEC
T ss_pred CceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceee------------eeecCCCCcEEEEEec
Confidence 112222222100 0000011234556667789999999998753211111 1134788999999999
Q ss_pred CC---CcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccc
Q psy12356 234 NS---GRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYH 309 (400)
Q Consensus 234 pd---g~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
|+ |++|+++ .|++|++||++++..+.... + ..
T Consensus 214 p~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~-------------------~--------------------~~----- 249 (753)
T 3jro_A 214 PTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKT-------------------L--------------------LK----- 249 (753)
T ss_dssp CCCSSSEEEEEEESSSCEEEEEESSSSSCCBCC-------------------B--------------------SS-----
T ss_pred cCCCCCCEEEEEecCCEEEEecCCCCCCcceeE-------------------E--------------------ec-----
Confidence 99 8999875 69999999998753211000 0 00
Q ss_pred eEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCcc
Q psy12356 310 INSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEI 365 (400)
Q Consensus 310 i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~ 365 (400)
..+|...|.+++|+|||++|+++ .|++|++|++..
T Consensus 250 ---------------------~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~ 285 (753)
T 3jro_A 250 ---------------------EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (753)
T ss_dssp ---------------------SSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred ---------------------cCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence 02467788999999999999997 699999999874
No 78
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=99.96 E-value=1.2e-27 Score=230.18 Aligned_cols=226 Identities=11% Similarity=0.145 Sum_probs=161.6
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++++|+|+|.+||||+.|++|+|||+.++ +.+..+.+|.. .|.+++|+|++.
T Consensus 77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~-----------~~~~~~~~h~~------------~v~~v~~sp~~~-- 131 (343)
T 2xzm_R 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTG-----------TTYKRFVGHQS------------EVYSVAFSPDNR-- 131 (343)
T ss_dssp SCEEEEEECSSTTEEEEEETTSEEEEEETTSS-----------CEEEEEECCCS------------CEEEEEECSSTT--
T ss_pred CceEEEEECCCCCEEEEEcCCCcEEEEECCCC-----------cEEEEEcCCCC------------cEEEEEECCCCC--
Confidence 35899999999999999999999999999854 24567888874 499999999874
Q ss_pred eEEEeeCCCeEEEEEccCCCc------ccccccEEEEEEecCCC---------CEEEEEeCCCeEEEEeccccccccccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM------EELNEVITAAEFHPIDC---------NLFVYSSSKGTIRLCDMRAAALCDRHS 148 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~------~~~~~~V~sv~f~p~~~---------~~las~s~Dg~i~lWD~~~~~~~~~~~ 148 (400)
.+++++.|++|+|||+..... ..|...|.+++|+|++. .+|++++.|++|++||.... ....
T Consensus 132 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~-~~~~-- 208 (343)
T 2xzm_R 132 QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQ-IRYT-- 208 (343)
T ss_dssp EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTTE-EEEE--
T ss_pred EEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCCc-eeEE--
Confidence 777889999999999974321 24667899999999752 58999999999999995433 1110
Q ss_pred ceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeE
Q psy12356 149 KCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSIS 228 (400)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 228 (400)
+..+ ...+..+ ..+|++...++++.||+|++||++...... ..+ .+...|.
T Consensus 209 --~~~h-~~~v~~~----------~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~---~~~-------------~~~~~v~ 259 (343)
T 2xzm_R 209 --FKAH-ESNVNHL----------SISPNGKYIATGGKDKKLLIWDILNLTYPQ---REF-------------DAGSTIN 259 (343)
T ss_dssp --EECC-SSCEEEE----------EECTTSSEEEEEETTCEEEEEESSCCSSCS---EEE-------------ECSSCEE
T ss_pred --EcCc-cccceEE----------EECCCCCEEEEEcCCCeEEEEECCCCcccc---eee-------------cCCCcEE
Confidence 0000 0112222 234677677778899999999996432110 111 2335699
Q ss_pred EEEECCCCcEEEEecCCeEEEEeCCCCCCcee--eec-----------CCC-------cCCCCccc-CCCCCceeecCcc
Q psy12356 229 DVKISNSGRYMISRDYLCVKVWDLHMESRPVE--TYP-----------THT-------KEENGQLR-DPSNITALRVPQI 287 (400)
Q Consensus 229 ~v~fSpdg~~las~~D~tIklWD~~~~~~~l~--~~~-----------~h~-------~~~~g~~~-~~~~~~~i~l~~~ 287 (400)
+++|+|++++++++.|++|+|||+.++. ++. .+. +|. +.|+|+++ +++.+++|++|++
T Consensus 260 ~v~~sp~~~~la~~~d~~v~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~ 338 (343)
T 2xzm_R 260 QIAFNPKLQWVAVGTDQGVKIFNLMTQS-KAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338 (343)
T ss_dssp EEEECSSSCEEEEEESSCEEEEESSSCC-SCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEE
T ss_pred EEEECCCCCEEEEECCCCEEEEEeCCCC-CCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEE
Confidence 9999999999998889999999998753 222 333 342 45666654 3566677776654
No 79
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=1.4e-27 Score=231.47 Aligned_cols=298 Identities=9% Similarity=0.041 Sum_probs=184.1
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|++|+|||||++||+|+.|+ ++|||+.... .. +..+. ..+..+++.++++
T Consensus 20 ~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~-----------~~--~~~~~------------~~~~~~~~~~~~~-- 71 (355)
T 3vu4_A 20 NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVA-----------HI--MSQEM------------RHLSKVRMLHRTN-- 71 (355)
T ss_dssp CCCCEEEECTTSSEEEEECSSE-EEEEEETTEE-----------EE--EEEEC------------SCCCEEEECTTSS--
T ss_pred CceEEEEECCCCCEEEEEcCCE-EEEEecCCcc-----------ee--eeeec------------CCeEEEEEcCCCC--
Confidence 4688999999999999998775 8899987421 11 11111 1256678877653
Q ss_pred eE-EEeeCCCeEEEEEccCCCc---ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccc-cccccccceeccCcccc
Q psy12356 84 HF-LLSTNDQSFNIVDIKPTNM---EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA-ALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 84 ~~-l~ss~D~tI~lWd~~~~~~---~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~-~~~~~~~~~~~~~~~~~ 158 (400)
.+ ++++.|++|+|||+.+++. ..+...|.+++|+|+ .++.+ .|+.|++||+.++ +.+..... .
T Consensus 72 ~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~---~~~~~-~~~~i~i~d~~~~~~~~~~~~~--------~ 139 (355)
T 3vu4_A 72 YVAFVTGVKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE---FIVVS-YGDVISVFKFGNPWKRITDDIR--------F 139 (355)
T ss_dssp EEEEECSSTTEEEEEETTTTEEEEEEECSSCEEEEEECSS---EEEEE-ETTEEEEEESSTTCCBSSCCEE--------E
T ss_pred EEEEEECCccEEEEEECCCCcEEEEEECCCceEEEEEcCC---EEEEE-EcCEEEEEECCCCceeeEEecc--------C
Confidence 44 4567899999999988863 134568999999985 23333 5889999999887 43322111 0
Q ss_pred eeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcE
Q psy12356 159 CQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRY 238 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~ 238 (400)
.....+ ++...+.++++.||.|++||++++......-+.............+.+|.+.|.+++|||||++
T Consensus 140 ~~~~~~----------s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~ 209 (355)
T 3vu4_A 140 GGVCEF----------SNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDM 209 (355)
T ss_dssp EEEEEE----------ETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSE
T ss_pred CceEEE----------EccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCE
Confidence 000111 1223334446789999999998754211000000000000001225689999999999999999
Q ss_pred EEEe-cCCe-EEEEeCCCCCCceeeec-C-CC-------cCCCCccc-CCCCCceeecCcccccceeeccCccceeccc-
Q psy12356 239 MISR-DYLC-VKVWDLHMESRPVETYP-T-HT-------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANA- 305 (400)
Q Consensus 239 las~-~D~t-IklWD~~~~~~~l~~~~-~-h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~- 305 (400)
||++ .|++ |+|||++++ .++.+++ + |. +.|+|+++ +++.++++++|++......-.......+...
T Consensus 210 l~s~s~d~~~v~iwd~~~~-~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~ 288 (355)
T 3vu4_A 210 VATCSQDGTIIRVFKTEDG-VLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY 288 (355)
T ss_dssp EEEEETTCSEEEEEETTTC-CEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred EEEEeCCCCEEEEEECCCC-cEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence 9975 6898 999999986 4788887 5 74 57899875 5788999999988543210000000000000
Q ss_pred --cccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 306 --HTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 306 --~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
+.+.+....+ ..++......++|+|||++|+++ .|+++++|++...+
T Consensus 289 ~~~~~~~~~~~~---------------~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 289 FQSEWSLCNFKL---------------SVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp CCCSSCSEEEEC---------------CCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred cccccceeEEEe---------------ccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 0000111111 12233345679999999999997 69999999986533
No 80
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=99.96 E-value=4.4e-27 Score=222.65 Aligned_cols=257 Identities=12% Similarity=0.110 Sum_probs=186.9
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeee--ccCcchhhcccccccceeeEEEEEeccC
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQ--SHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
..|.+++|+|+|++||+++ ||+|+|||+.+... ...+..+. +|. ..|.+++|+|+++
T Consensus 52 ~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~--------~~~~~~~~~~~~~------------~~v~~~~~~~~~~ 110 (337)
T 1gxr_A 52 EVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGN--------KSPVSQLDCLNRD------------NYIRSCKLLPDGC 110 (337)
T ss_dssp SCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTC--------CSCSEEEECSCTT------------SBEEEEEECTTSS
T ss_pred CceEEEEEecCCcEEEEcC-CCeEEEEECCCCCc--------eeeeecccccCCC------------CcEEEEEEcCCCC
Confidence 3588999999999999999 99999999986431 11122333 444 4599999999864
Q ss_pred CceEEEeeCCCeEEEEEccCCCc------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPTNM------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~~~------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
.+++++.|++|++||+++++. ..+...|++++|+|++ +++++++.|+.|++||++++........ .
T Consensus 111 --~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~v~~~d~~~~~~~~~~~~----~- 182 (337)
T 1gxr_A 111 --TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDS-KVCFSCCSDGNIAVWDLHNQTLVRQFQG----H- 182 (337)
T ss_dssp --EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTEEEEEECC----C-
T ss_pred --EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCC-CEEEEEeCCCcEEEEeCCCCceeeeeec----c-
Confidence 677788999999999988762 3456779999999974 7899999999999999998743221110 0
Q ss_pred ccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
...+..+. ..+++...++++.||.|++||++++.... .+ .|...+.+++|+|+
T Consensus 183 ~~~i~~~~----------~~~~~~~l~~~~~dg~i~~~d~~~~~~~~----~~-------------~~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 183 TDGASCID----------ISNDGTKLWTGGLDNTVRSWDLREGRQLQ----QH-------------DFTSQIFSLGYCPT 235 (337)
T ss_dssp SSCEEEEE----------ECTTSSEEEEEETTSEEEEEETTTTEEEE----EE-------------ECSSCEEEEEECTT
T ss_pred cCceEEEE----------ECCCCCEEEEEecCCcEEEEECCCCceEe----ee-------------cCCCceEEEEECCC
Confidence 01122222 23555555666789999999998765321 11 34578999999999
Q ss_pred CcEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccccceeeccCccceecccc
Q psy12356 236 GRYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAH 306 (400)
Q Consensus 236 g~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~ 306 (400)
|++|+++ .|+.|++||++++. ...+.+|. +.++|+++ +++.++.+++|++...+.. ....|
T Consensus 236 ~~~l~~~~~~~~i~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~--------~~~~~ 305 (337)
T 1gxr_A 236 GEWLAVGMESSNVEVLHVNKPD--KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--------FQSKE 305 (337)
T ss_dssp SSEEEEEETTSCEEEEETTSSC--EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE--------EEEEC
T ss_pred CCEEEEEcCCCcEEEEECCCCC--eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEE--------EEecC
Confidence 9999864 68999999999763 34566664 56788864 5678899999987644332 12357
Q ss_pred ccceEEEEEcCCCcEEeecc
Q psy12356 307 TYHINSISVNSDQLTVEASP 326 (400)
Q Consensus 307 ~~~i~~i~~s~dg~~~~~~~ 326 (400)
...|.+++|+|||+++++.+
T Consensus 306 ~~~v~~~~~s~~~~~l~~~~ 325 (337)
T 1gxr_A 306 SSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp SSCEEEEEECTTSCEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEec
Confidence 78899999999999887544
No 81
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=8.7e-28 Score=231.03 Aligned_cols=269 Identities=14% Similarity=0.135 Sum_probs=178.6
Q ss_pred EEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEE
Q psy12356 8 ASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLL 87 (400)
Q Consensus 8 ~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ 87 (400)
...+.+|+++||+|+.||+|+|||+.+++ .+..+.. ..|.++.|+|. +++
T Consensus 41 ~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~-----------~~~~~~~--------------~~v~~~~~~~~-----~~s 90 (343)
T 3lrv_A 41 NKSMYYDKWVCMCRCEDGALHFTQLKDSK-----------TITTITT--------------PNPRTGGEHPA-----IIS 90 (343)
T ss_dssp CSSSSEEEEEEEEEEETTEEEEEEESSSS-----------CEEEEEE--------------ECCCTTCCCCS-----EEE
T ss_pred hhhhcCCCCEEEEECCCCcEEEEECCCCc-----------EEEEEec--------------CCceeeeeCCc-----eEE
Confidence 34556799999999999999999998643 2333331 23666778764 778
Q ss_pred eeCCCeEEEEEcc---------CCC-cc----cccccEEEEEEec--CCCCEEEEEeCCCeEEEEeccccccccccccee
Q psy12356 88 STNDQSFNIVDIK---------PTN-ME----ELNEVITAAEFHP--IDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCL 151 (400)
Q Consensus 88 ss~D~tI~lWd~~---------~~~-~~----~~~~~V~sv~f~p--~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~ 151 (400)
++.|++|++|+.. +++ ++ .+...|.+++|+| ++ ++|++++.|++|++||++++........
T Consensus 91 ~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~s~dg~i~~wd~~~~~~~~~~~~-- 167 (343)
T 3lrv_A 91 RGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNT-EYFIWADNRGTIGFQSYEDDSQYIVHSA-- 167 (343)
T ss_dssp ECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---C-CEEEEEETTCCEEEEESSSSCEEEEECC--
T ss_pred ecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCC-CEEEEEeCCCcEEEEECCCCcEEEEEec--
Confidence 8999999999765 333 22 2336799999999 85 7899999999999999998843211000
Q ss_pred ccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccc-cccCeEEE
Q psy12356 152 IEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSE-IISSISDV 230 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~v 230 (400)
.....+.. +...|++...++++.||.|++||++++.... .. +.+ |..+|.+|
T Consensus 168 --~~~~~i~~----------~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~---~~------------~~~~h~~~v~~l 220 (343)
T 3lrv_A 168 --KSDVEYSS----------GVLHKDSLLLALYSPDGILDVYNLSSPDQAS---SR------------FPVDEEAKIKEV 220 (343)
T ss_dssp --CSSCCCCE----------EEECTTSCEEEEECTTSCEEEEESSCTTSCC---EE------------CCCCTTSCEEEE
T ss_pred --CCCCceEE----------EEECCCCCEEEEEcCCCEEEEEECCCCCCCc---cE------------EeccCCCCEEEE
Confidence 00001112 2334677777888899999999999765320 11 224 88899999
Q ss_pred EECCCCcEEEEecCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccce
Q psy12356 231 KISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHI 310 (400)
Q Consensus 231 ~fSpdg~~las~~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i 310 (400)
+|+|+|++|++++|++|+|||++++. +++.+..+. .|...+
T Consensus 221 ~fs~~g~~l~s~~~~~v~iwd~~~~~-~~~~~~~~~--------------------------------------~~~~~~ 261 (343)
T 3lrv_A 221 KFADNGYWMVVECDQTVVCFDLRKDV-GTLAYPTYT--------------------------------------IPEFKT 261 (343)
T ss_dssp EECTTSSEEEEEESSBEEEEETTSST-TCBSSCCCB--------------------------------------C-----
T ss_pred EEeCCCCEEEEEeCCeEEEEEcCCCC-cceeecccc--------------------------------------cccccc
Confidence 99999999998767799999999864 344443221 011111
Q ss_pred --EEEEEcCCCcEEee--c-cc--chhh---c---ccccceeEEEEcc---CCCEEEEe-cCCeEEEEeCccCCeeEEEE
Q psy12356 311 --NSISVNSDQLTVEA--S-PR--GIFA---D---AHTYHISSTSVNS---DQETYLSA-DDLRINLWHLEITDQSFNIV 373 (400)
Q Consensus 311 --~~i~~s~dg~~~~~--~-~~--~~~~---~---gh~~~V~~i~fsp---Dg~~las~-~D~~i~lW~~~~~~~~~~~~ 373 (400)
.+++|+|+|+++++ . .. ++|. . -...++..++|+| +++.|+++ .|++++++-.. ...++++
T Consensus 262 ~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~--~~~~~i~ 339 (343)
T 3lrv_A 262 GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTKDEESALCLQSDTADFTDMDVVCGDGGIAAILKT--NDSFNIV 339 (343)
T ss_dssp CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEEEEEEECCC----CCCCEEEEEEETTEEEEEEEC--SSEEEEE
T ss_pred cceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEecCceeEecCccccccceeEEEecCCceEEEEec--CCeEeEE
Confidence 35777888877765 2 11 1221 0 0114566789999 99999886 69999888643 2357888
Q ss_pred eecC
Q psy12356 374 DIKP 377 (400)
Q Consensus 374 ~~~~ 377 (400)
.+-|
T Consensus 340 ~l~p 343 (343)
T 3lrv_A 340 ALTP 343 (343)
T ss_dssp EEEC
T ss_pred EcCC
Confidence 7766
No 82
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.95 E-value=3e-27 Score=234.73 Aligned_cols=257 Identities=16% Similarity=0.223 Sum_probs=183.0
Q ss_pred eeEEEEEECCC-CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFSD-GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fspd-G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
+.|++++|+|+ +++||+++.||+|+|||+....... ...+..+.+..+.+|.. .|.+++|+|++.
T Consensus 129 ~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~-~~~~~~~~~~~~~~h~~------------~v~~l~~~~~~~- 194 (430)
T 2xyi_A 129 GEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP-EPSGECQPDLRLRGHQK------------EGYGLSWNPNLN- 194 (430)
T ss_dssp SCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC-CTTCCCCCSEEEECCSS------------CCCCEEECTTST-
T ss_pred CcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc-CccccCCCcEEecCCCC------------CeEEEEeCCCCC-
Confidence 56899999997 7899999999999999987521100 00112344567788874 489999999863
Q ss_pred ceEEEeeCCCeEEEEEccCCC-----------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccccccccee
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTN-----------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCL 151 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~-----------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~ 151 (400)
..+++++.|++|+|||+.++. +..|...|.+++|+|+++.+|++++.|+.|++||++++.... .
T Consensus 195 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~----~- 269 (430)
T 2xyi_A 195 GYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSK----P- 269 (430)
T ss_dssp TEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSS----C-
T ss_pred CeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCc----c-
Confidence 367778899999999998732 124667899999999767899999999999999998761000 0
Q ss_pred ccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEE
Q psy12356 152 IEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVK 231 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 231 (400)
... +..|...|++++
T Consensus 270 -----------------------------------------------------~~~------------~~~~~~~v~~i~ 284 (430)
T 2xyi_A 270 -----------------------------------------------------SHT------------VDAHTAEVNCLS 284 (430)
T ss_dssp -----------------------------------------------------SEE------------EECCSSCEEEEE
T ss_pred -----------------------------------------------------eeE------------eecCCCCeEEEE
Confidence 000 124667899999
Q ss_pred ECCCCc-EEEE-ecCCeEEEEeCCCCCCceeeecCCC-------cCCCCc--ccCCCCCceeecCcccccceeeccCccc
Q psy12356 232 ISNSGR-YMIS-RDYLCVKVWDLHMESRPVETYPTHT-------KEENGQ--LRDPSNITALRVPQIKPIELTVEASPRR 300 (400)
Q Consensus 232 fSpdg~-~las-~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~--~~~~~~~~~i~l~~~~~~~~~~~~~~~~ 300 (400)
|+|+++ +|++ +.|++|+|||+++...++..+.+|. +.|+++ +++++.+++|++|++.........
T Consensus 285 ~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---- 360 (430)
T 2xyi_A 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST---- 360 (430)
T ss_dssp ECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH----
T ss_pred eCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc----
Confidence 999997 5665 4689999999998667888898885 467775 345677888888887532110000
Q ss_pred eeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCC-EEEEe-cCCeEEEEeCcc
Q psy12356 301 IFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQE-TYLSA-DDLRINLWHLEI 365 (400)
Q Consensus 301 ~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~-~las~-~D~~i~lW~~~~ 365 (400)
....+.. .+.+ ....+|...|.+++|+|+++ +|+++ .|++|+||++..
T Consensus 361 --~~~~~~~---------~~~~------~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 361 --EDAEDGP---------PELL------FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp --HHHHHCC---------TTEE------EECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred --cccccCC---------cceE------EEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 0000000 0000 01147999999999999999 78886 799999999874
No 83
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.95 E-value=5.2e-27 Score=232.90 Aligned_cols=269 Identities=12% Similarity=0.182 Sum_probs=183.4
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
|.+++| ||++||+|+.||+|+|||+.++ +....+.+|.. .|.+++| ++ ..+
T Consensus 136 v~~~~~--d~~~l~~g~~dg~i~iwd~~~~-----------~~~~~~~~h~~------------~v~~l~~--~~--~~l 186 (435)
T 1p22_A 136 VYCLQY--DDQKIVSGLRDNTIKIWDKNTL-----------ECKRILTGHTG------------SVLCLQY--DE--RVI 186 (435)
T ss_dssp EEEEEC--CSSEEEEEESSSCEEEEESSSC-----------CEEEEECCCSS------------CEEEEEC--CS--SEE
T ss_pred EEEEEE--CCCEEEEEeCCCeEEEEeCCCC-----------eEEEEEcCCCC------------cEEEEEE--CC--CEE
Confidence 666665 8999999999999999998753 24567888874 4888988 33 377
Q ss_pred EEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceec
Q psy12356 86 LLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQG 161 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
++++.|++|++||+.+++. ..|...|.+++|++ +.+++++.|++|++||++++...... ...... ...+..
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~s~dg~i~vwd~~~~~~~~~~-~~~~~~-~~~v~~ 261 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNN---GMMVTCSKDRSIAVWDMASPTDITLR-RVLVGH-RAAVNV 261 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCT---TEEEEEETTSCEEEEECSSSSCCEEE-EEECCC-SSCEEE
T ss_pred EEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcC---CEEEEeeCCCcEEEEeCCCCCCceee-eEecCC-CCcEEE
Confidence 7889999999999998873 45678899999975 48999999999999999887432100 000000 001111
Q ss_pred eeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEE
Q psy12356 162 LIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMIS 241 (400)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las 241 (400)
+. .++...++++.||+|++||++++... .. +.+|...|.+++| +++++++
T Consensus 262 ~~------------~~~~~l~s~~~dg~i~vwd~~~~~~~----~~------------~~~~~~~v~~~~~--~~~~l~~ 311 (435)
T 1p22_A 262 VD------------FDDKYIVSASGDRTIKVWNTSTCEFV----RT------------LNGHKRGIACLQY--RDRLVVS 311 (435)
T ss_dssp EE------------EETTEEEEEETTSEEEEEETTTCCEE----EE------------EECCSSCEEEEEE--ETTEEEE
T ss_pred EE------------eCCCEEEEEeCCCeEEEEECCcCcEE----EE------------EcCCCCcEEEEEe--CCCEEEE
Confidence 11 12334555667999999999876432 11 3467788999999 4678776
Q ss_pred -ecCCeEEEEeCCCCCCceeeecCCCcC-----CCCcc-cCCCCCceeecCcccccceeeccCccceeccccccceEEEE
Q psy12356 242 -RDYLCVKVWDLHMESRPVETYPTHTKE-----ENGQL-RDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSIS 314 (400)
Q Consensus 242 -~~D~tIklWD~~~~~~~l~~~~~h~~~-----~~g~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~ 314 (400)
+.|++|++||++++ .++..+.+|... .++.+ ++++.+++|++|++..... .. . . ...+..
T Consensus 312 g~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-----~~-~--~--~~~~~~-- 378 (435)
T 1p22_A 312 GSSDNTIRLWDIECG-ACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALD-----PR-A--P--AGTLCL-- 378 (435)
T ss_dssp EETTSCEEEEETTTC-CEEEEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHHTS-----TT-S--C--TTTTEE--
T ss_pred EeCCCeEEEEECCCC-CEEEEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCCCC-----cc-c--c--ccchhe--
Confidence 57999999999986 478889888521 25554 3467778888887632210 00 0 0 000000
Q ss_pred EcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 315 VNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 315 ~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
.. ..+|...|.+++| |+++|+++ .|++|++||+....
T Consensus 379 -------------~~-~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~ 416 (435)
T 1p22_A 379 -------------RT-LVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDP 416 (435)
T ss_dssp -------------EE-ECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-----
T ss_pred -------------ee-ccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCC
Confidence 00 1479999999999 88999997 69999999997643
No 84
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=99.95 E-value=2.5e-27 Score=239.32 Aligned_cols=246 Identities=9% Similarity=0.080 Sum_probs=171.0
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+|+|||||++||+++.||+|+|||.+. ++..+. |.... .+..|.+++||||++
T Consensus 86 ~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-------------~l~~l~-~~~~~-------~~~sv~svafSPDG~-- 142 (588)
T 2j04_A 86 CYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-------------MLTNLD-SKGNL-------SSRTYHCFEWNPIES-- 142 (588)
T ss_dssp CCEEEEEECSSSSCEEEEETTSCEEEEETTE-------------EEEECC-CSSCS-------TTTCEEEEEECSSSS--
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-------------eeeecc-CCCcc-------ccccEEEEEEcCCCC--
Confidence 3589999999999999999999999999641 345566 54210 013488999999985
Q ss_pred eEEEeeCCCeEEEEEccCCCc---------------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccccccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM---------------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHS 148 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~---------------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~ 148 (400)
.+++++.||+|+|||+.++.+ .+|...|.+++|+|++ +|+++.|++|++||+.++..... .
T Consensus 143 ~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~-~ 218 (588)
T 2j04_A 143 SIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPV-S 218 (588)
T ss_dssp CEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCC-E
T ss_pred EEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccc-e
Confidence 677789999999999988753 3345689999999974 78899999999999988742100 0
Q ss_pred ceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeE
Q psy12356 149 KCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSIS 228 (400)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 228 (400)
..+.......++.+.+ + +...++++ +++|++||+..+... .+ ..+|.+.|.
T Consensus 219 ~tL~~~h~~~V~svaF----------s--g~~LASa~-~~tIkLWd~~~~~~~-----~~-----------~~gh~~~V~ 269 (588)
T 2j04_A 219 RMIQNASRRKITDLKI----------V--DYKVVLTC-PGYVHKIDLKNYSIS-----SL-----------KTGSLENFH 269 (588)
T ss_dssp EEEECCCSSCCCCEEE----------E--TTEEEEEC-SSEEEEEETTTTEEE-----EE-----------ECSCCSCCC
T ss_pred eeecccccCcEEEEEE----------E--CCEEEEEe-CCeEEEEECCCCeEE-----EE-----------EcCCCceEE
Confidence 0010000011222222 2 12333443 699999999875431 11 126889999
Q ss_pred EEEE--CCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccc
Q psy12356 229 DVKI--SNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANA 305 (400)
Q Consensus 229 ~v~f--Spdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~ 305 (400)
+++| |||+..|+++ .||+ |||.... ++ +.+++.+.+ +.++++++|+....+ ... . .
T Consensus 270 ~va~~~s~d~~~La~a~edG~-klw~~d~----~~------~spd~~l~a-~~d~~v~lW~~~g~~-------l~~-~-~ 328 (588)
T 2j04_A 270 IIPLNHEKESTILLMSNKTSY-KVLLEDE----LH------VTADNIIAP-YLEKKFKKWSTIWNE-------FNN-Y-E 328 (588)
T ss_dssp EEEETTCSSCEEEEECSSCEE-EEEESSS----EE------EECCCSSHH-HHHHHHHHTTTTTTS-------SSS-S-C
T ss_pred EEEeeeCCCCCEEEEEcCCCC-EEEeecc----EE------ECCCceEEE-EcCCEEEEEECCCCc-------eee-e-c
Confidence 9999 9999999876 5899 9999871 32 355666543 237889999864332 111 1 2
Q ss_pred cccceEEEEEcCCCcEEeecc
Q psy12356 306 HTYHINSISVNSDQLTVEASP 326 (400)
Q Consensus 306 ~~~~i~~i~~s~dg~~~~~~~ 326 (400)
+...|.+++|||||+.+|.+.
T Consensus 329 ~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 329 TTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp CEEEEEEEEECTTSSEEEEEE
T ss_pred cceEEEEEEECCCCCEEEEEE
Confidence 367799999999999988654
No 85
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=99.95 E-value=3.4e-26 Score=216.26 Aligned_cols=226 Identities=17% Similarity=0.195 Sum_probs=163.2
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|||++||+|+.||+|+|||+.++ +.+..+.+|.. .|.+++|+|+++
T Consensus 66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~-----------~~~~~~~~~~~------------~v~~~~~~~~~~-- 120 (312)
T 4ery_A 66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSG-----------KCLKTLKGHSN------------YVFCCNFNPQSN-- 120 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTC-----------CEEEEEECCSS------------CEEEEEECSSSS--
T ss_pred CceEEEEEcCCCCEEEEECCCCEEEEEECCCC-----------cEEEEEcCCCC------------CEEEEEEcCCCC--
Confidence 45899999999999999999999999999753 24567888873 489999999874
Q ss_pred eEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+++++.|++|++||+++++. ..|...|.+++|+|++ ++|++++.|++|++||++++...... .......+
T Consensus 121 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~~wd~~~~~~~~~~----~~~~~~~~ 195 (312)
T 4ery_A 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTL----IDDDNPPV 195 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTCCEEEEE----CCSSCCCE
T ss_pred EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCC-CEEEEEeCCCcEEEEECCCCceeeEE----eccCCCce
Confidence 777889999999999988762 4566789999999975 78999999999999999987432210 00000111
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccC---eEEEEECCCC
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISS---ISDVKISNSG 236 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~---V~~v~fSpdg 236 (400)
..+ ...+++...++++.||.|++||++.+... +.+. +|... +......+++
T Consensus 196 ~~~----------~~~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~------------~~~~~~~~~~~~~~~~~~ 249 (312)
T 4ery_A 196 SFV----------KFSPNGKYILAATLDNTLKLWDYSKGKCL----KTYT------------GHKNEKYCIFANFSVTGG 249 (312)
T ss_dssp EEE----------EECTTSSEEEEEETTTEEEEEETTTTEEE----EEEC------------SSCCSSSCCCEEEECSSS
T ss_pred EEE----------EECCCCCEEEEEcCCCeEEEEECCCCcEE----EEEE------------ecCCceEEEEEEEEeCCC
Confidence 112 22356655666778999999999876532 2222 22222 3233344688
Q ss_pred cEEEEe-cCCeEEEEeCCCCCCceeeecCCC-------cCCCCcccC-C--CCCceeecCc
Q psy12356 237 RYMISR-DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLRD-P--SNITALRVPQ 286 (400)
Q Consensus 237 ~~las~-~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~~-~--~~~~~i~l~~ 286 (400)
++|+++ .|++|++||++++ .+++.+.+|. ++|++.+++ + +.++++++|.
T Consensus 250 ~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 250 KWIVSGSEDNLVYIWNLQTK-EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309 (312)
T ss_dssp CEEEECCTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred cEEEEECCCCEEEEEECCCc-hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence 888875 6899999999986 4688899885 356666542 2 3567777765
No 86
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.95 E-value=1.3e-26 Score=221.12 Aligned_cols=209 Identities=11% Similarity=0.073 Sum_probs=133.1
Q ss_pred eeEEEEEECCC----CCeEEEecC--------------------CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcch
Q psy12356 4 YMREASQRFSD----GELLATGDK--------------------GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEF 59 (400)
Q Consensus 4 ~~v~~v~fspd----G~~Las~s~--------------------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~ 59 (400)
..|++|+|||| ++++|+++. |++|++|++.+. .+.+.++.+|.+
T Consensus 112 ~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d----------G~~~~s~~~~~~-- 179 (356)
T 2w18_A 112 REIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED----------GGGKENQFLMPP-- 179 (356)
T ss_dssp EEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT----------SCEEEEEEECCC--
T ss_pred cceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC----------CceeeeeccCCC--
Confidence 47899999999 999988663 666666666431 123445556664
Q ss_pred hhcccccccceeeEEEEEe-ccCCceEEEeeCCCeEEEEEccCCCc-c---cc---cccEEEEEEecCCCCEEEEEeCCC
Q psy12356 60 DYLKSLEIEEKINKIRWLR-RKNQAHFLLSTNDQSFNIVDIKPTNM-E---EL---NEVITAAEFHPIDCNLFVYSSSKG 131 (400)
Q Consensus 60 ~~~~~~~~~~~V~~v~~sp-~~~~~~~l~ss~D~tI~lWd~~~~~~-~---~~---~~~V~sv~f~p~~~~~las~s~Dg 131 (400)
.+..++|+| ++.+..+++++.|++|||||+++|++ + .+ ...+.+++|+|++ .++++++.+.
T Consensus 180 ----------~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG-~~lvs~s~~~ 248 (356)
T 2w18_A 180 ----------EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMG-LLFIVLSHPC 248 (356)
T ss_dssp ----------SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETT-EEEEEEC---
T ss_pred ----------ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCC-CEEEEeccCC
Confidence 377889998 55444677789999999999999873 2 22 2357788999975 7777776554
Q ss_pred eEEEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCC
Q psy12356 132 TIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEP 211 (400)
Q Consensus 132 ~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~ 211 (400)
. +|++.++ +.|++|++||..++..... ..+..|
T Consensus 249 ~--~w~laSG-------------------------------------------s~D~tIklWd~~tgk~l~v--~~~~~p 281 (356)
T 2w18_A 249 A--KESESLR-------------------------------------------SPVFQLIVINPKTTLSVGV--MLYCLP 281 (356)
T ss_dssp ------------------------------------------------------CCEEEEEEETTTTEEEEE--EEECCC
T ss_pred C--cceeecc-------------------------------------------CCCcEEEEEECCCCEEEEE--EEeecc
Confidence 3 3665554 3477888888776643210 000001
Q ss_pred CCCCCcccccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCccccc
Q psy12356 212 EDPTNKSFFSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPI 290 (400)
Q Consensus 212 ~~~~~~~~~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~ 290 (400)
.+|...+.+..++ +.++|++ .|++|||||+.++ +++++|++|
T Consensus 282 ---------~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tG-k~l~tL~gH------------------------- 324 (356)
T 2w18_A 282 ---------PGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLG-QCTALLPPV------------------------- 324 (356)
T ss_dssp ---------TTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTC-SEEEEECCC-------------------------
T ss_pred ---------CCCcceeEccccC--CCEEEEEcCCCcEEEEECCCC-cEEEEecCC-------------------------
Confidence 2455555444444 7888875 6999999999986 466666544
Q ss_pred ceeeccCccceeccccccceEEEEEcCCCcEEeecccchhhcccccc-eeEEEEccCCCEEEEe-cCCeEEEEeC
Q psy12356 291 ELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYH-ISSTSVNSDQETYLSA-DDLRINLWHL 363 (400)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~-V~~i~fspDg~~las~-~D~~i~lW~~ 363 (400)
... +.+++|||||++|||+ .|++|||||+
T Consensus 325 --------------------------------------------~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 325 --------------------------------------------SDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ----------------------------------------------CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred --------------------------------------------CCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 222 2358999999999997 6999999985
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=99.95 E-value=9.4e-27 Score=244.84 Aligned_cols=203 Identities=15% Similarity=0.177 Sum_probs=154.1
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+|+|+|||++||||+.||+|+|||+.++ +..+.+.+|.. .|.+++|+|++.
T Consensus 431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~-----------~~~~~~~~h~~------------~v~~~~~s~~~~-- 485 (694)
T 3dm0_A 431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAG-----------VSTRRFVGHTK------------DVLSVAFSLDNR-- 485 (694)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTT-----------EEEEEEECCSS------------CEEEEEECTTSS--
T ss_pred CcEEEEEECCCCCEEEEEeCCCcEEEEECCCC-----------cceeEEeCCCC------------CEEEEEEeCCCC--
Confidence 35899999999999999999999999999753 34567888874 499999999874
Q ss_pred eEEEeeCCCeEEEEEccCCC-------cccccccEEEEEEecCCC-CEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-------MEELNEVITAAEFHPIDC-NLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-------~~~~~~~V~sv~f~p~~~-~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
.+++++.|++|+|||+.... ...|...|++++|+|++. .++++++.|++|++||++++.+...... +.
T Consensus 486 ~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~----h~ 561 (694)
T 3dm0_A 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG----HT 561 (694)
T ss_dssp CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC----CS
T ss_pred EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC----CC
Confidence 78889999999999986543 134667899999999752 5799999999999999998744221111 00
Q ss_pred ccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
..+..+. .++++...++++.||+|++||++++.... .+ .+...|.+++|||+
T Consensus 562 -~~v~~v~----------~spdg~~l~sg~~Dg~i~iwd~~~~~~~~----~~-------------~~~~~v~~~~~sp~ 613 (694)
T 3dm0_A 562 -GYVSTVA----------VSPDGSLCASGGKDGVVLLWDLAEGKKLY----SL-------------EANSVIHALCFSPN 613 (694)
T ss_dssp -SCEEEEE----------ECTTSSEEEEEETTSBCEEEETTTTEEEE----CC-------------BCSSCEEEEEECSS
T ss_pred -CCEEEEE----------EeCCCCEEEEEeCCCeEEEEECCCCceEE----Ee-------------cCCCcEEEEEEcCC
Confidence 1122222 34666667777889999999998765321 11 22357999999999
Q ss_pred CcEEEEecCCeEEEEeCCCCCCceeeecC
Q psy12356 236 GRYMISRDYLCVKVWDLHMESRPVETYPT 264 (400)
Q Consensus 236 g~~las~~D~tIklWD~~~~~~~l~~~~~ 264 (400)
+.+|+++.|+.|+|||++++ .+++.+..
T Consensus 614 ~~~l~~~~~~~i~iwd~~~~-~~~~~~~~ 641 (694)
T 3dm0_A 614 RYWLCAATEHGIKIWDLESK-SIVEDLKV 641 (694)
T ss_dssp SSEEEEEETTEEEEEETTTT-EEEEEECC
T ss_pred CcEEEEEcCCCEEEEECCCC-CChhhhcc
Confidence 99999888889999999986 34555543
No 88
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=99.95 E-value=2.1e-26 Score=224.17 Aligned_cols=196 Identities=12% Similarity=0.132 Sum_probs=138.8
Q ss_pred EEEEEECCCCCeEE--EecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 6 REASQRFSDGELLA--TGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 6 v~~v~fspdG~~La--s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
+.+|+|||||++|| +++.|++|+|||+.+. +.+..+. |. ..|.+|+|+|++
T Consensus 136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-----------~~~~~~~-~~------------~~V~~v~fspdg--- 188 (365)
T 4h5i_A 136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDL-----------TEKFEIE-TR------------GEVKDLHFSTDG--- 188 (365)
T ss_dssp EEEEEECTTSSCEEEEESCSSCEEEEEETTTT-----------EEEEEEE-CS------------SCCCEEEECTTS---
T ss_pred EEEEEEcCCCCEEEEEECCCCCEEEEeECCCC-----------cEEEEeC-CC------------CceEEEEEccCC---
Confidence 67899999999976 4557999999999853 2344454 43 348999999987
Q ss_pred eEEEeeCCCeEEEEEccCCCc------ccccccEEEEEEecCCCCEEEEEeCCC----eEEEEecccccccccccceecc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM------EELNEVITAAEFHPIDCNLFVYSSSKG----TIRLCDMRAAALCDRHSKCLIE 153 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~------~~~~~~V~sv~f~p~~~~~las~s~Dg----~i~lWD~~~~~~~~~~~~~~~~ 153 (400)
++++++.|+.+++|+..++.. ..+...|++++|+|++ +++++++.|+ ++++||+............+..
T Consensus 189 ~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg-~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~ 267 (365)
T 4h5i_A 189 KVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADD-TVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTN 267 (365)
T ss_dssp SEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETT-EEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEES
T ss_pred ceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCC-CEEEEEecCCcceeEEeecccccceecceeeeeecC
Confidence 455544456677777766652 2356679999999985 7889998887 6899998766321000000100
Q ss_pred CcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 154 GTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
. ...+..+ .++|++..+++++.|++|+|||+++++.. + .++.+|...|++|+||
T Consensus 268 ~-~~~V~~~----------~~Spdg~~lasgs~D~~V~iwd~~~~~~~----~-----------~~~~gH~~~V~~v~fS 321 (365)
T 4h5i_A 268 R-FKGITSM----------DVDMKGELAVLASNDNSIALVKLKDLSMS----K-----------IFKQAHSFAITEVTIS 321 (365)
T ss_dssp S-CSCEEEE----------EECTTSCEEEEEETTSCEEEEETTTTEEE----E-----------EETTSSSSCEEEEEEC
T ss_pred C-CCCeEeE----------EECCCCCceEEEcCCCEEEEEECCCCcEE----E-----------EecCcccCCEEEEEEC
Confidence 0 0112222 33578877888889999999999986542 1 1134789999999999
Q ss_pred CCCcEEEEe-cCCeEEEEeCCCC
Q psy12356 234 NSGRYMISR-DYLCVKVWDLHME 255 (400)
Q Consensus 234 pdg~~las~-~D~tIklWD~~~~ 255 (400)
|||++|||+ .|+||||||+...
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Confidence 999999975 6999999999754
No 89
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=99.95 E-value=1.8e-25 Score=212.28 Aligned_cols=235 Identities=16% Similarity=0.177 Sum_probs=160.1
Q ss_pred ceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCC---------cccccccEEEEEE
Q psy12356 46 YNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN---------MEELNEVITAAEF 116 (400)
Q Consensus 46 ~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~---------~~~~~~~V~sv~f 116 (400)
+.+..+|+||+. .|++|+|+|+.. ..++++|.|++|+|||+.+++ ++.|...|++++|
T Consensus 28 ~~l~~tL~GH~~------------~V~~v~~sp~~~-~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 28 MTLRGTLKGHNG------------WVTQIATTPQFP-DMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp EEEEEEECCCSS------------CEEEEEECTTCT-TEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEE
T ss_pred eEEEEEECCccC------------CEEEEEEeCCCC-CEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEE
Confidence 455678999984 599999999742 366778999999999997654 2356788999999
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecc
Q psy12356 117 HPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMR 196 (400)
Q Consensus 117 ~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~ 196 (400)
+|++ ++|++++.|+.|++|+........... .. ....... ...+.....++++.|+.+++||++
T Consensus 95 s~dg-~~l~s~~~d~~i~~~~~~~~~~~~~~~----~~-~~~~~~~----------~~~~~~~~l~s~s~d~~~~~~d~~ 158 (340)
T 4aow_A 95 SSDG-QFALSGSWDGTLRLWDLTTGTTTRRFV----GH-TKDVLSV----------AFSSDNRQIVSGSRDKTIKLWNTL 158 (340)
T ss_dssp CTTS-SEEEEEETTSEEEEEETTTTEEEEEEE----CC-SSCEEEE----------EECTTSSCEEEEETTSCEEEECTT
T ss_pred CCCC-CEEEEEcccccceEEeecccceeeeec----CC-CCceeEE----------EEeecCccceeecCCCeEEEEEeC
Confidence 9985 799999999999999998874321100 00 0000011 112334445566789999999987
Q ss_pred cccccCcccccccCCCCCCCcccccccccCeEEEEECCCCc--EEEE-ecCCeEEEEeCCCCCCceeeecCCCcCCCCcc
Q psy12356 197 AAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGR--YMIS-RDYLCVKVWDLHMESRPVETYPTHTKEENGQL 273 (400)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~--~las-~~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~ 273 (400)
...... . ...+|...+..++|++++. ++++ +.|++|++||++++ .++..+.+|.
T Consensus 159 ~~~~~~-----~----------~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~-~~~~~~~~h~------- 215 (340)
T 4aow_A 159 GVCKYT-----V----------QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANC-KLKTNHIGHT------- 215 (340)
T ss_dssp SCEEEE-----E----------CSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTT-EEEEEECCCS-------
T ss_pred CCceEE-----E----------EeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCC-ceeeEecCCC-------
Confidence 543210 0 1236778999999998754 5665 57999999999975 3556665553
Q ss_pred cCCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeeccc----chh---------hcccccceeE
Q psy12356 274 RDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPR----GIF---------ADAHTYHISS 340 (400)
Q Consensus 274 ~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~----~~~---------~~gh~~~V~~ 340 (400)
..|++++|+|||+++++.+. ++| ...+...|.+
T Consensus 216 ----------------------------------~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~ 261 (340)
T 4aow_A 216 ----------------------------------GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA 261 (340)
T ss_dssp ----------------------------------SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECSSCEEE
T ss_pred ----------------------------------CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCCceEEe
Confidence 33444555555554443221 000 1134567999
Q ss_pred EEEccCCCEEEEecCCeEEEEeCccC
Q psy12356 341 TSVNSDQETYLSADDLRINLWHLEIT 366 (400)
Q Consensus 341 i~fspDg~~las~~D~~i~lW~~~~~ 366 (400)
++|+|++.+++++.|++|++||++..
T Consensus 262 ~~~~~~~~~~~~~~d~~i~iwd~~~~ 287 (340)
T 4aow_A 262 LCFSPNRYWLCAATGPSIKIWDLEGK 287 (340)
T ss_dssp EEECSSSSEEEEEETTEEEEEETTTT
T ss_pred eecCCCCceeeccCCCEEEEEECCCC
Confidence 99999999887788999999999853
No 90
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=99.95 E-value=3.5e-26 Score=227.21 Aligned_cols=203 Identities=16% Similarity=0.218 Sum_probs=147.0
Q ss_pred ccceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCC------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccc
Q psy12356 67 IEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 67 ~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~ 140 (400)
++.+|++|+|+|..+ ..+++++.||+|+|||+.+++ +.+|...|++++|+|.++++|+|+|.|++|++||+++
T Consensus 118 ~~~~V~~l~~~P~~~-~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~ 196 (435)
T 4e54_B 118 FDRRATSLAWHPTHP-STVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKG 196 (435)
T ss_dssp CSSCEEEEEECSSCT-TCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTS
T ss_pred CCCCEEEEEEeCCCC-CEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccC
Confidence 346799999999642 367788999999999998765 2357789999999997678999999999999999987
Q ss_pred ccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccc
Q psy12356 141 AALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFF 220 (400)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (400)
+.... +........+. ..+...+++..+++++.||.|++||++.... .. +
T Consensus 197 ~~~~~-----~~~~~~~~~~~--------~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~-----~~------------~ 246 (435)
T 4e54_B 197 NILRV-----FASSDTINIWF--------CSLDVSASSRMVVTGDNVGNVILLNMDGKEL-----WN------------L 246 (435)
T ss_dssp CEEEE-----EECCSSCSCCC--------CCEEEETTTTEEEEECSSSBEEEEESSSCBC-----CC------------S
T ss_pred CceeE-----EeccCCCCccE--------EEEEECCCCCEEEEEeCCCcEeeeccCccee-----EE------------E
Confidence 63211 00000000000 0112235666677788999999999874321 11 3
Q ss_pred cccccCeEEEEECCCCc-EEEE-ecCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCc
Q psy12356 221 SEIISSISDVKISNSGR-YMIS-RDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASP 298 (400)
Q Consensus 221 ~~h~~~V~~v~fSpdg~-~las-~~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~ 298 (400)
.+|...|.+|+|+|+++ ++++ +.|++|+|||+++... ...+
T Consensus 247 ~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~-~~~~------------------------------------ 289 (435)
T 4e54_B 247 RMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRG-KASF------------------------------------ 289 (435)
T ss_dssp BCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCS-SSCC------------------------------------
T ss_pred ecccceEEeeeecCCCceEEEEecCcceeeEEecccccc-cceE------------------------------------
Confidence 47889999999999987 5665 4699999999986431 1110
Q ss_pred cceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 299 RRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 299 ~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
.. ..+|...|++|+|||||++|+++ .|++|+|||+...+
T Consensus 290 ----~~--------------------------~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~ 329 (435)
T 4e54_B 290 ----LY--------------------------SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWD 329 (435)
T ss_dssp ----SB--------------------------CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSS
T ss_pred ----EE--------------------------eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCc
Confidence 00 03688889999999999999997 69999999998654
No 91
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=99.94 E-value=4.4e-26 Score=222.41 Aligned_cols=260 Identities=13% Similarity=0.105 Sum_probs=186.0
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|++++|+|||++||+|+.||.|+|||... +.+..+.+|. ..|.+++|+|+++ .
T Consensus 110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~------------~~~~~~~~~~------------~~v~~~~~~~~~~--~ 163 (425)
T 1r5m_A 110 QVTCLAWSHDGNSIVTGVENGELRLWNKTG------------ALLNVLNFHR------------APIVSVKWNKDGT--H 163 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTS------------CEEEEECCCC------------SCEEEEEECTTSS--E
T ss_pred ceEEEEEcCCCCEEEEEeCCCeEEEEeCCC------------CeeeeccCCC------------ccEEEEEECCCCC--E
Confidence 799999999999999999999999999432 2355677776 3499999999874 6
Q ss_pred EEEeeCCCeEEEEEccCCCc----cccccc---------------EEEEEEecCCCCEEEEEeCCCeEEEEecccccccc
Q psy12356 85 FLLSTNDQSFNIVDIKPTNM----EELNEV---------------ITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCD 145 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~----~~~~~~---------------V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~ 145 (400)
+++++.|++|++||+.+++. ..+... +.+++|+|+ ..+++++.|+.|++||++++....
T Consensus 164 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~d~~~~~~~~ 241 (425)
T 1r5m_A 164 IISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD--DKFVIPGPKGAIFVYQITEKTPTG 241 (425)
T ss_dssp EEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEET--TEEEEECGGGCEEEEETTCSSCSE
T ss_pred EEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCC--CEEEEEcCCCeEEEEEcCCCceee
Confidence 77889999999999988762 222222 888999996 468999999999999999874322
Q ss_pred cccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccccccc
Q psy12356 146 RHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIIS 225 (400)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 225 (400)
... .. ...+..+. ..+++...++++.||.|++||++.+... .. +.+|..
T Consensus 242 ~~~----~~-~~~i~~~~----------~~~~~~~l~~~~~d~~i~i~d~~~~~~~----~~------------~~~~~~ 290 (425)
T 1r5m_A 242 KLI----GH-HGPISVLE----------FNDTNKLLLSASDDGTLRIWHGGNGNSQ----NC------------FYGHSQ 290 (425)
T ss_dssp EEC----CC-SSCEEEEE----------EETTTTEEEEEETTSCEEEECSSSBSCS----EE------------ECCCSS
T ss_pred eec----cC-CCceEEEE----------ECCCCCEEEEEcCCCEEEEEECCCCccc----eE------------ecCCCc
Confidence 110 00 01112222 2355555666678999999999875421 11 235778
Q ss_pred CeEEEEECCCCcEEEE-ecCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccccceee--
Q psy12356 226 SISDVKISNSGRYMIS-RDYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPIELTV-- 294 (400)
Q Consensus 226 ~V~~v~fSpdg~~las-~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~~~-- 294 (400)
.|.+++|+|++ ++++ +.|++|++||++++ .++..+.+|. +.++|+++ +++.++.+++|++...+...
T Consensus 291 ~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~ 368 (425)
T 1r5m_A 291 SIVSASWVGDD-KVISCSMDGSVRLWSLKQN-TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRS 368 (425)
T ss_dssp CEEEEEEETTT-EEEEEETTSEEEEEETTTT-EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC----
T ss_pred cEEEEEECCCC-EEEEEeCCCcEEEEECCCC-cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceee
Confidence 99999999999 6665 67999999999986 4677777774 46788865 46778999999886443000
Q ss_pred ------------ccCccceecccccc--ceEEEEEcCCCcEEeecc
Q psy12356 295 ------------EASPRRIFANAHTY--HINSISVNSDQLTVEASP 326 (400)
Q Consensus 295 ------------~~~~~~~~~~~~~~--~i~~i~~s~dg~~~~~~~ 326 (400)
....... ..+|.. .|.+++|+|||++|++..
T Consensus 369 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~ 413 (425)
T 1r5m_A 369 LYGNRDGILNPLPIPLYAS-YQSSQDNDYIFDLSWNCAGNKISVAY 413 (425)
T ss_dssp ----------CEECCEEEE-ECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred eecccccccCcccchhhhh-hcCcccCCceEEEEccCCCceEEEEe
Confidence 0001122 245755 899999999999886543
No 92
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=99.94 E-value=7.2e-26 Score=213.49 Aligned_cols=207 Identities=13% Similarity=0.159 Sum_probs=146.1
Q ss_pred eeEEEEEECCC--CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccC
Q psy12356 4 YMREASQRFSD--GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 4 ~~v~~v~fspd--G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
+.|++|+|+|+ |++||||+.||+|+|||+.++. ...+..+.+|.. .|.+++|+|+..
T Consensus 54 ~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~---------~~~~~~~~~h~~------------~v~~v~~~p~~~ 112 (297)
T 2pm7_B 54 GPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR---------WSQIAVHAVHSA------------SVNSVQWAPHEY 112 (297)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC---------BCCCEEECCCSS------------CEEEEEECCGGG
T ss_pred CCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc---------eEEEEEeecCCC------------ceeEEEeCcCCC
Confidence 46899999874 9999999999999999997532 223445677763 499999999732
Q ss_pred CceEEEeeCCCeEEEEEccCCC------cccccccEEEEEEecCC------------CCEEEEEeCCCeEEEEecccccc
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPTN------MEELNEVITAAEFHPID------------CNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~~------~~~~~~~V~sv~f~p~~------------~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
+..+++++.|++|+|||++++. +..|...|++++|+|+. +++||+++.|++|++||++++..
T Consensus 113 g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~ 192 (297)
T 2pm7_B 113 GPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (297)
T ss_dssp CSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTT
T ss_pred CcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCc
Confidence 3367788999999999998653 23567789999999963 36899999999999999987631
Q ss_pred cccccceeccCcc--cceeceeccCchhhhhhcccC---cceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcc
Q psy12356 144 CDRHSKCLIEGTN--CNCQGLIVPESKREERQSSQN---RREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKS 218 (400)
Q Consensus 144 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 218 (400)
.. .....+.. ..+..+.+ +|+ +...++++.|++|+|||++....... ...+.
T Consensus 193 ~~---~~~~~l~~H~~~V~~v~~----------sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~-~~~~~--------- 249 (297)
T 2pm7_B 193 TY---VLESTLEGHSDWVRDVAW----------SPTVLLRSYMASVSQDRTCIIWTQDNEQGPWK-KTLLK--------- 249 (297)
T ss_dssp EE---EEEEEECCCSSCEEEEEE----------CCCCSSSEEEEEEETTSCEEEEEESSTTSCCE-EEESS---------
T ss_pred eE---EEEEEecCCCCceEEEEE----------CCCCCCceEEEEEECCCcEEEEEeCCCCCccc-eeeee---------
Confidence 00 01111111 11222333 344 24566777899999999976321000 00110
Q ss_pred cccccccCeEEEEECCCCcEEEE-ecCCeEEEEeCCCC
Q psy12356 219 FFSEIISSISDVKISNSGRYMIS-RDYLCVKVWDLHME 255 (400)
Q Consensus 219 ~~~~h~~~V~~v~fSpdg~~las-~~D~tIklWD~~~~ 255 (400)
..+|...|.+++|+|+|++||+ +.|++|+||+....
T Consensus 250 -~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~ 286 (297)
T 2pm7_B 250 -EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (297)
T ss_dssp -SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred -cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence 1256678999999999999997 57999999998743
No 93
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.94 E-value=6.9e-26 Score=222.17 Aligned_cols=215 Identities=9% Similarity=0.081 Sum_probs=153.6
Q ss_pred eeEEEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
..|++++|+| ++++||+|+.||+|+|||+.++.... ...+.+..+.+|. ..|.+++|+|++.
T Consensus 82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~----~~~~~~~~~~~h~------------~~v~~~~~~p~~~- 144 (402)
T 2aq5_A 82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL----PLREPVITLEGHT------------KRVGIVAWHPTAQ- 144 (402)
T ss_dssp SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS----CBCSCSEEEECCS------------SCEEEEEECSSBT-
T ss_pred CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc----ccCCceEEecCCC------------CeEEEEEECcCCC-
Confidence 4689999999 99999999999999999998653110 0012355777887 4599999999862
Q ss_pred ceEEEeeCCCeEEEEEccCCC----c--ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTN----M--EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~----~--~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
..+++++.|++|+|||+.+++ + ..|...|.+++|+|++ ++|++++.|++|++||++++....... .....
T Consensus 145 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~---~~~~~ 220 (402)
T 2aq5_A 145 NVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG-ALICTSCRDKRVRVIEPRKGTVVAEKD---RPHEG 220 (402)
T ss_dssp TEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS-SCEEEEETTSEEEEEETTTTEEEEEEE---CSSCS
T ss_pred CEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC-CEEEEEecCCcEEEEeCCCCceeeeec---cCCCC
Confidence 367778999999999998876 2 3467789999999975 789999999999999999885432110 01101
Q ss_pred cceeceeccCchhhhhhcccCcceeecC---CCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 157 CNCQGLIVPESKREERQSSQNRREKEDN---RRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
.....+ ...+++...+++ +.|+.|++||++..... ..... ..|...|.+++|+
T Consensus 221 ~~~~~~----------~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~---~~~~~-----------~~~~~~v~~~~~s 276 (402)
T 2aq5_A 221 TRPVHA----------VFVSEGKILTTGFSRMSERQVALWDTKHLEEP---LSLQE-----------LDTSSGVLLPFFD 276 (402)
T ss_dssp SSCCEE----------EECSTTEEEEEEECTTCCEEEEEEETTBCSSC---SEEEE-----------CCCCSSCEEEEEE
T ss_pred CcceEE----------EEcCCCcEEEEeccCCCCceEEEEcCccccCC---ceEEe-----------ccCCCceeEEEEc
Confidence 001111 223555555555 68999999999875431 11110 1345679999999
Q ss_pred CCCcEEE-Ee-cCCeEEEEeCCCCCCceeeec
Q psy12356 234 NSGRYMI-SR-DYLCVKVWDLHMESRPVETYP 263 (400)
Q Consensus 234 pdg~~la-s~-~D~tIklWD~~~~~~~l~~~~ 263 (400)
|+|++|+ ++ .|++|++||+.++..++..+.
T Consensus 277 ~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~ 308 (402)
T 2aq5_A 277 PDTNIVYLCGKGDSSIRYFEITSEAPFLHYLS 308 (402)
T ss_dssp TTTTEEEEEETTCSCEEEEEECSSTTCEEEEE
T ss_pred CCCCEEEEEEcCCCeEEEEEecCCCcceEeec
Confidence 9999986 45 599999999998653355543
No 94
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=99.94 E-value=3.1e-25 Score=219.19 Aligned_cols=231 Identities=11% Similarity=0.135 Sum_probs=169.2
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|++|+|+|||++||+|+.||+|+|||+.++ +.++.+.+|.. .|.+++|++ . .
T Consensus 149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~-----------~~~~~~~~h~~------------~v~~~s~~~--~--~ 201 (420)
T 4gga_A 149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-----------KRLRNMTSHSA------------RVGSLSWNS--Y--I 201 (420)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTT-----------EEEEEECCCSS------------CEEEEEEET--T--E
T ss_pred cEEEEEECCCCCEEEEEECCCeEEEEEcCCC-----------cEEEEEeCCCC------------ceEEEeeCC--C--E
Confidence 5999999999999999999999999999853 35678888874 477777753 2 5
Q ss_pred EEEeeCCCeEEEEEccCCC-----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTN-----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~-----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+++++.|+++++||..... +..|...+..+.|+|++ +++++++.|+.+++||++.+............. ...+
T Consensus 202 l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g-~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~-~~~V 279 (420)
T 4gga_A 202 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAV 279 (420)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCCSSCSCCSEEECCC-SSCE
T ss_pred EEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCC-CeeeeeeccccceEEeeccccccceeeeeeccc-CCce
Confidence 6678999999999987654 24567789999999985 789999999999999998874211000000000 0111
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
..+.+.+ ......++++++.|++|++||++++.... .+ .+...+.++.|+|+++.+
T Consensus 280 ~~~~~~p-------~~~~~la~~~gs~D~~I~iwd~~t~~~~~----~~-------------~~~~~v~~~~~~~~~~~l 335 (420)
T 4gga_A 280 KAVAWCP-------WQSNVLATGGGTSDRHIRIWNVCSGACLS----AV-------------DAHSQVCSILWSPHYKEL 335 (420)
T ss_dssp EEEEECT-------TCTTEEEEEECTTTCEEEEEETTTTEEEE----EE-------------ECSSCEEEEEEETTTTEE
T ss_pred eeeeeCC-------CcccEEEEEeecCCCEEEEEeCCccccce----ee-------------ccccceeeeeecCCCCeE
Confidence 1111110 01123456677899999999999876431 11 122578899999999988
Q ss_pred EE-e--cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccc
Q psy12356 240 IS-R--DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKP 289 (400)
Q Consensus 240 as-~--~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~ 289 (400)
++ + .|++|+|||+.++ .++.++.+|. ++|+|.++ +++.|++|++|++..
T Consensus 336 v~~sg~~d~~I~iwd~~~~-~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~ 395 (420)
T 4gga_A 336 ISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395 (420)
T ss_dssp EEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEecCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 74 3 4899999999986 5789999996 57899865 578999999998754
No 95
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=5.9e-25 Score=219.19 Aligned_cols=309 Identities=11% Similarity=0.099 Sum_probs=189.1
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcc-----h-------hh----------
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPE-----F-------DY---------- 61 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~-----~-------~~---------- 61 (400)
.-+.+++|+|||++|++++ ++.|++||+.+++. .+.+..+..+... . ..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~-~~~i~v~d~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAII-KNCILSFKYQSPNH--------WEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK 75 (450)
T ss_dssp CCCCEEEECSSSSEEEEEE-TTEEEEEEEETTTE--------EEEEEEEECCC---------------------------
T ss_pred ccEEEEEecCCCCEEEEEe-CCeEEEEECCCCCc--------ceeeeecCCccccccccccccchhhccccccccccccc
Confidence 4578999999999877764 78999999876540 1122333322210 0 00
Q ss_pred --------------------cccccccceeeEEEEEeccCCceE-EEeeCCCeEEEEEcc--CCCc----c--cccccEE
Q psy12356 62 --------------------LKSLEIEEKINKIRWLRRKNQAHF-LLSTNDQSFNIVDIK--PTNM----E--ELNEVIT 112 (400)
Q Consensus 62 --------------------~~~~~~~~~V~~v~~sp~~~~~~~-l~ss~D~tI~lWd~~--~~~~----~--~~~~~V~ 112 (400)
.....+...|.+++|+|+++ .+ ++++.|++|+|||+. ++.. . .+...|+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~ 153 (450)
T 2vdu_B 76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPN 153 (450)
T ss_dssp ------------------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEE
T ss_pred cccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCce
Confidence 00001233599999999874 54 567789999999998 6652 1 3446799
Q ss_pred EEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc--cceeceeccCchhhhhhcccC---cceeecCCCC
Q psy12356 113 AAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN--CNCQGLIVPESKREERQSSQN---RREKEDNRRK 187 (400)
Q Consensus 113 sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~d 187 (400)
+++|+|++ ++|++++.|+.|++||+.++..... +...+.. ..+..+ ...++ +..+++++.|
T Consensus 154 ~~~~sp~~-~~l~~~~~~g~v~~~~~~~~~~~~~---~~~~~~~h~~~v~~~----------~~sp~~~~~~~l~s~~~d 219 (450)
T 2vdu_B 154 AISIAEDD-TTVIIADKFGDVYSIDINSIPEEKF---TQEPILGHVSMLTDV----------HLIKDSDGHQFIITSDRD 219 (450)
T ss_dssp EEEECTTS-SEEEEEETTSEEEEEETTSCCCSSC---CCCCSEECSSCEEEE----------EEEECTTSCEEEEEEETT
T ss_pred EEEEcCCC-CEEEEEeCCCcEEEEecCCcccccc---cceeeecccCceEEE----------EEcCCCCCCcEEEEEcCC
Confidence 99999985 7899999999999999988743210 0001110 111222 23355 6566677789
Q ss_pred CeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCC
Q psy12356 188 PAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHT 266 (400)
Q Consensus 188 g~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~ 266 (400)
++|++||++++... .. .+.+|...|.+++|+ +|++|+++ .|++|+|||++++ .+++.+..|.
T Consensus 220 ~~i~vwd~~~~~~~----~~-----------~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~-~~~~~~~~~~ 282 (450)
T 2vdu_B 220 EHIKISHYPQCFIV----DK-----------WLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG-KNLSTFDYNS 282 (450)
T ss_dssp SCEEEEEESCTTCE----EE-----------ECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC-CEEEEEECHH
T ss_pred CcEEEEECCCCcee----ee-----------eecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC-cEeeeecchh
Confidence 99999999875432 11 123688899999999 99999975 6899999999986 4677775442
Q ss_pred cCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecc-c----chh-----------
Q psy12356 267 KEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASP-R----GIF----------- 330 (400)
Q Consensus 267 ~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~-~----~~~----------- 330 (400)
... .+. ..+...+.. +.... .......|..+.++|||+++++.+ . ++|
T Consensus 283 ~~~--~~~--------~~~~~~~~~--~~~~~----~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~ 346 (450)
T 2vdu_B 283 LIK--PYL--------NDQHLAPPR--FQNEN----NDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLA 346 (450)
T ss_dssp HHG--GGC--------CTTSBC----------------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEE
T ss_pred hhh--hhh--------hhccccccc--ccccc----cccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCcee
Confidence 100 000 000000000 00000 012334577788888887765432 1 000
Q ss_pred ----hcccccceeEEEEccCCCEEEEec-------CCeEEEEeCccCCeeEE
Q psy12356 331 ----ADAHTYHISSTSVNSDQETYLSAD-------DLRINLWHLEITDQSFN 371 (400)
Q Consensus 331 ----~~gh~~~V~~i~fspDg~~las~~-------D~~i~lW~~~~~~~~~~ 371 (400)
..+| ..|.+++|+|++.+++.+. ++.|++|.++...+.+.
T Consensus 347 ~~~~~~~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 347 LKQIITFP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp EEEEEECS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred eccEeccC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 1355 7899999999654444332 44589999876544443
No 96
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=99.94 E-value=1.4e-25 Score=214.80 Aligned_cols=252 Identities=14% Similarity=0.115 Sum_probs=167.7
Q ss_pred eeEEEEEECCC----CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe-
Q psy12356 4 YMREASQRFSD----GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR- 78 (400)
Q Consensus 4 ~~v~~v~fspd----G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp- 78 (400)
..|.+++|+|+ |++||+|+.||+|+|||+.++ +.+..+.+|. ..|.+++|+|
T Consensus 70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~-----------~~~~~~~~~~------------~~i~~~~~~~~ 126 (366)
T 3k26_A 70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM-----------QCIKHYVGHG------------NAINELKFHPR 126 (366)
T ss_dssp CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC-----------CEEEEEESCC------------SCEEEEEECSS
T ss_pred CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc-----------eEeeeecCCC------------CcEEEEEECCC
Confidence 45899999999 779999999999999999753 2456778887 3599999999
Q ss_pred ccCCceEEEeeCCCeEEEEEccCCCc-------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccccccccee
Q psy12356 79 RKNQAHFLLSTNDQSFNIVDIKPTNM-------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCL 151 (400)
Q Consensus 79 ~~~~~~~l~ss~D~tI~lWd~~~~~~-------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~ 151 (400)
++. .+++++.|++|++||+++++. ..|...|.+++|+|++ ++|++++.|+.|++||++++..........
T Consensus 127 ~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 203 (366)
T 3k26_A 127 DPN--LLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLG-EKIMSCGMDHSLKLWRINSKRMMNAIKESY 203 (366)
T ss_dssp CTT--EEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTS-SEEEEEETTSCEEEEESCSHHHHHHHHHHH
T ss_pred CCC--EEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCC-CEEEEecCCCCEEEEECCCCccccccceeE
Confidence 543 677788999999999988762 3567789999999975 789999999999999999875322110000
Q ss_pred c--------cCcccce--eceec---cCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCC-CCc
Q psy12356 152 I--------EGTNCNC--QGLIV---PESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDP-TNK 217 (400)
Q Consensus 152 ~--------~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~-~~~ 217 (400)
. ....... ..... .......+... +...++++.||.|++||++...... ..+...... ...
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~---~~~~~~~~~~~~~ 278 (366)
T 3k26_A 204 DYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDI---DKIKPSESNVTIL 278 (366)
T ss_dssp TCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCG---GGCCTTCCCEEEE
T ss_pred EecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccc---cccccCCcchhee
Confidence 0 0000000 00000 00000001111 2345566789999999998764321 111111000 011
Q ss_pred ccccccccCeEEEEECCC--CcEEEEe-cCCeEEEEeCCCCCCcee----eecCCCcCCCCcccCCCCCceeecCccccc
Q psy12356 218 SFFSEIISSISDVKISNS--GRYMISR-DYLCVKVWDLHMESRPVE----TYPTHTKEENGQLRDPSNITALRVPQIKPI 290 (400)
Q Consensus 218 ~~~~~h~~~V~~v~fSpd--g~~las~-~D~tIklWD~~~~~~~l~----~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~ 290 (400)
..+.+|...|.+++|+|+ |++|+++ .|++|++||+.++. ++. .+.+|
T Consensus 279 ~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~~~~~~~~------------------------- 332 (366)
T 3k26_A 279 GRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED-PHKAKCTTLTHH------------------------- 332 (366)
T ss_dssp EEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS-GGGCEEEEECCT-------------------------
T ss_pred ccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC-CccccceEEccc-------------------------
Confidence 124567888999999999 9999975 68999999999753 222 22111
Q ss_pred ceeeccCccceeccccccceEEEEEcCCCcEEeecc
Q psy12356 291 ELTVEASPRRIFANAHTYHINSISVNSDQLTVEASP 326 (400)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~ 326 (400)
.|...|++++|+|||++|++.+
T Consensus 333 --------------~~~~~v~~~~~s~~~~~l~s~~ 354 (366)
T 3k26_A 333 --------------KCGAAIRQTSFSRDSSILIAVC 354 (366)
T ss_dssp --------------TCCSCEEEEEECTTSSEEEEEE
T ss_pred --------------ccCCceEEEEeCCCCCeEEEEe
Confidence 1356788999999998887554
No 97
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.94 E-value=3.1e-25 Score=219.14 Aligned_cols=261 Identities=10% Similarity=0.112 Sum_probs=164.6
Q ss_pred ccceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCC---------------ccccc------------ccEEEEEEecC
Q psy12356 67 IEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN---------------MEELN------------EVITAAEFHPI 119 (400)
Q Consensus 67 ~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~---------------~~~~~------------~~V~sv~f~p~ 119 (400)
+.+.|.+|+|+|+++ .+++++.|++|+|||+.++. +..|. ..|++++|+|+
T Consensus 27 ~~~~V~~v~~s~~g~--~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 27 EADIISTVEFNHSGE--LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp GGGSEEEEEECSSSS--EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred ccCcEEEEEECCCCC--EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 346799999999874 67778999999999998654 23455 66999999998
Q ss_pred CC-CEEEEEeCCCeEEEEeccccccccc------ccceecc---Ccccce------------e-ceeccCchh---hhhh
Q psy12356 120 DC-NLFVYSSSKGTIRLCDMRAAALCDR------HSKCLIE---GTNCNC------------Q-GLIVPESKR---EERQ 173 (400)
Q Consensus 120 ~~-~~las~s~Dg~i~lWD~~~~~~~~~------~~~~~~~---~~~~~~------------~-~~~~~~~~~---~~~~ 173 (400)
+. ..|++++.|++|++||+.++..... +...+.. ...... . ...+..++. ..+.
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 53 5899999999999999987532100 0000000 000000 0 000001111 1123
Q ss_pred cccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC-cEEEE-ecCCeEEEEe
Q psy12356 174 SSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG-RYMIS-RDYLCVKVWD 251 (400)
Q Consensus 174 ~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg-~~las-~~D~tIklWD 251 (400)
..+++...+++ .|++|++||++.....- ..+... ...+.+|...|.+++|+|+| ++|++ +.|++|+|||
T Consensus 185 ~~~~~~~l~s~-~d~~i~iwd~~~~~~~~---~~~~~~-----~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd 255 (447)
T 3dw8_B 185 INSDYETYLSA-DDLRINLWHLEITDRSF---NIVDIK-----PANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCD 255 (447)
T ss_dssp ECTTSSEEEEE-CSSEEEEEETTEEEEEE---EEEECC-----CSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEE
T ss_pred EcCCCCEEEEe-CCCeEEEEECCCCCcee---eeeecc-----cccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEE
Confidence 34566555666 69999999998543221 111100 01145788899999999998 88886 4699999999
Q ss_pred CCCCCCc---eeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccc
Q psy12356 252 LHMESRP---VETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRG 328 (400)
Q Consensus 252 ~~~~~~~---l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~ 328 (400)
++++..+ ++.+.+|..... .. ...+|...|.+++|+|||++|++....
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~----------------------------~~-~~~~~~~~v~~~~~s~~g~~l~~~~~~ 306 (447)
T 3dw8_B 256 MRASALCDRHSKLFEEPEDPSN----------------------------RS-FFSEIISSISDVKFSHSGRYMMTRDYL 306 (447)
T ss_dssp TTTCSSSCTTCEEECCC---------------------------------CC-HHHHHTTCEEEEEECTTSSEEEEEESS
T ss_pred CcCCccccceeeEeccCCCccc----------------------------cc-cccccCceEEEEEECCCCCEEEEeeCC
Confidence 9986421 566666531100 00 113466678888899888887753321
Q ss_pred ---hh-----------hcccccc---------------eeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 329 ---IF-----------ADAHTYH---------------ISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 329 ---~~-----------~~gh~~~---------------V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
+| ..+|... +.+++|+|||++||++ .|++|++||+...+
T Consensus 307 ~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~ 375 (447)
T 3dw8_B 307 SVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR 375 (447)
T ss_dssp EEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC
T ss_pred eEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc
Confidence 11 1355432 3349999999999997 69999999998654
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.94 E-value=2e-24 Score=203.11 Aligned_cols=230 Identities=10% Similarity=0.111 Sum_probs=165.5
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|++|+|+|+|++||+|+.||+|+|||+.++ +.++.+.+|... +.++ ++++. .
T Consensus 69 ~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~-----------~~~~~~~~h~~~------------~~~~--~~~~~--~ 121 (318)
T 4ggc_A 69 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ-----------KRLRNMTSHSAR------------VGSL--SWNSY--I 121 (318)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEETTTT-----------EEEEEEECCSSC------------EEEE--EEETT--E
T ss_pred eEEEEEECCCCCEEEEEECCCcEEEeecCCc-----------eeEEEecCccce------------EEEe--ecCCC--E
Confidence 5899999999999999999999999999853 356788888742 4444 44432 6
Q ss_pred EEEeeCCCeEEEEEccCCC-----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTN-----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~-----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+++++.++.+++|+...+. +..|...+..+.|++++ +++++++.|++|++||+++++............ ...+
T Consensus 122 l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~v 199 (318)
T 4ggc_A 122 LSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDG-RHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQH-QGAV 199 (318)
T ss_dssp EEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTS-SEEEEEETTSCEEEEESSCBTTBSCCSEEECCC-CSCE
T ss_pred EEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCC-CEEEEEecCcceeEEECCCCcccccceeeeccc-CCce
Confidence 6678899999999987764 23567789999999985 789999999999999999874321110000000 0011
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
....+.+ ........++++.+++|++||.+...... ...+...+..+.|+|+++.+
T Consensus 200 ~~~~~~~-------~~~~~~~~~~~~~~~~i~lwd~~~~~~~~-----------------~~~~~~~v~~~~~~~~~~~~ 255 (318)
T 4ggc_A 200 KAVAWCP-------WQSNVLATGGGTSDRHIRIWNVCSGACLS-----------------AVDAHSQVCSILWSPHYKEL 255 (318)
T ss_dssp EEEEECT-------TSTTEEEEEECTTTCEEEEEETTTCCEEE-----------------EEECSSCEEEEEEETTTTEE
T ss_pred EEEEecC-------CCCcEEEEEecCCCCEEEEEecccccccc-----------------cccceeeeeeeeecccccce
Confidence 1111110 01222345677889999999988654311 11345679999999999987
Q ss_pred EE-e--cCCeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCccc
Q psy12356 240 IS-R--DYLCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIK 288 (400)
Q Consensus 240 as-~--~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~ 288 (400)
++ + .|++|+|||++++ .+++++++|. ++|+|+++ +++.|++|++|++.
T Consensus 256 ~~~sg~~d~~i~iwd~~~~-~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 256 ISGHGFAQNQLVIWKYPTM-AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCF 314 (318)
T ss_dssp EEEECTTTCCEEEEETTTC-CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred EEEEEcCCCEEEEEECCCC-cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECC
Confidence 64 3 4899999999986 5789999995 56888865 57899999999874
No 99
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=99.94 E-value=1.6e-25 Score=217.58 Aligned_cols=241 Identities=10% Similarity=0.027 Sum_probs=161.2
Q ss_pred eeEEEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
..|.+++|+| ++++||+|+.|++|+|||+.+. ....+..|.. +...|.+++|+|+++
T Consensus 119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~------------~~~~~~~~~~---------~~~~v~~~~~~~~~~- 176 (383)
T 3ei3_B 119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS------------VIQVFAKTDS---------WDYWYCCVDVSVSRQ- 176 (383)
T ss_dssp CBEEEEEEETTEEEEEEEEETTTEEEEEETTSC------------EEEEEECCCC---------SSCCEEEEEEETTTT-
T ss_pred CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC------------ceEEEeccCC---------CCCCeEEEEECCCCC-
Confidence 5789999999 7899999999999999999742 2334444431 124599999999874
Q ss_pred ceEEEeeCCCeEEEEEccCCC---cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc-ccc
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTN---MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT-NCN 158 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~---~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~-~~~ 158 (400)
.+++++.|++|++||++... +..|...|.+++|+|++..+|++++.|++|++||+++..... .++.... ...
T Consensus 177 -~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~ 252 (383)
T 3ei3_B 177 -MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKN---SYIAEMPHEKP 252 (383)
T ss_dssp -EEEEEETTSEEEEEETTSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTT---CEEEEEECSSC
T ss_pred -EEEEECCCCCEEEEECCCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCccc---ceEEEecCCCc
Confidence 77788999999999995433 345678899999999865489999999999999999842110 1111110 111
Q ss_pred eeceeccCchhhhhhccc-CcceeecCCCCCeEEEeecccccccCcccccccCCCCCC------CcccccccccCeEEEE
Q psy12356 159 CQGLIVPESKREERQSSQ-NRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPT------NKSFFSEIISSISDVK 231 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~------~~~~~~~h~~~V~~v~ 231 (400)
+..+ ...+ ++...++++.|+.|++||++++... ..+..+.... ....+ .....+..++
T Consensus 253 v~~~----------~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~~ 317 (383)
T 3ei3_B 253 VNAA----------YFNPTDSTKLLTTDQRNEIRVYSSYDWSKP----DQIIIHPHRQFQHLTPIKATW-HPMYDLIVAG 317 (383)
T ss_dssp EEEE----------EECTTTSCEEEEEESSSEEEEEETTBTTSC----SEEEECCBCCCTTSCCCCCEE-CSSSSEEEEE
T ss_pred eEEE----------EEcCCCCCEEEEEcCCCcEEEEECCCCccc----cccccccccccccccceEEec-cCCCCceEEE
Confidence 2222 2335 6666667778999999999976542 1221111000 00000 0113455678
Q ss_pred ECCCCcEEEEecCCeEEEEeCCCCCCceeeecCCC---------cCCCCcccCCCCCceeecCcc
Q psy12356 232 ISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHT---------KEENGQLRDPSNITALRVPQI 287 (400)
Q Consensus 232 fSpdg~~las~~D~tIklWD~~~~~~~l~~~~~h~---------~~~~g~~~~~~~~~~i~l~~~ 287 (400)
|+|||++ .++.|++|+|||+.++. +++.+.+|. +.++|++++.+.++.|++|++
T Consensus 318 ~s~dg~~-s~s~d~~i~iwd~~~~~-~~~~l~~~~~~~~~~~~~~s~~g~~l~s~sd~~i~iw~~ 380 (383)
T 3ei3_B 318 RYPDDQL-LLNDKRTIDIYDANSGG-LVHQLRDPNAAGIISLNKFSPTGDVLASGMGFNILIWNR 380 (383)
T ss_dssp CBCCTTT-CTTCCCCEEEEETTTCC-EEEEECBTTBCSCCCEEEECTTSSEEEEEETTEEEEEEC
T ss_pred ecCCccc-ccCCCCeEEEEecCCCc-eeeeecCCCCCceEEEEEEecCccEEEEecCCcEEEEec
Confidence 8888887 44578999999999864 678887642 456777654223677777765
No 100
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=8.5e-25 Score=210.28 Aligned_cols=208 Identities=13% Similarity=0.161 Sum_probs=149.6
Q ss_pred eeEEEEEECCC--CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccC
Q psy12356 4 YMREASQRFSD--GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 4 ~~v~~v~fspd--G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
..|++++|+|+ |++||+|+.||+|+|||+.++ .......+.+|. ..|.+++|+|+..
T Consensus 56 ~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---------~~~~~~~~~~~~------------~~v~~~~~~~~~~ 114 (379)
T 3jrp_A 56 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG---------RWSQIAVHAVHS------------ASVNSVQWAPHEY 114 (379)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEEETT---------EEEEEEEECCCS------------SCEEEEEECCGGG
T ss_pred CcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCC---------ceeEeeeecCCC------------cceEEEEeCCCCC
Confidence 46899999988 999999999999999999753 222455666776 3599999999832
Q ss_pred CceEEEeeCCCeEEEEEccCCC------cccccccEEEEEEecC------------CCCEEEEEeCCCeEEEEecccccc
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPTN------MEELNEVITAAEFHPI------------DCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~~------~~~~~~~V~sv~f~p~------------~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
+..+++++.|++|++||+.++. +..+...|++++|+|. ++.+|++++.|++|++||++++..
T Consensus 115 ~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~ 194 (379)
T 3jrp_A 115 GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 194 (379)
T ss_dssp CSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTT
T ss_pred CCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCc
Confidence 2377788999999999998774 2346678999999994 357999999999999999987632
Q ss_pred cccccceeccCc--ccceeceeccCchhhhhhcccC---cceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcc
Q psy12356 144 CDRHSKCLIEGT--NCNCQGLIVPESKREERQSSQN---RREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKS 218 (400)
Q Consensus 144 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 218 (400)
... ....+. ...+..+. ..|+ +...++++.||.|++||++.+..... ...+.
T Consensus 195 ~~~---~~~~~~~h~~~v~~~~----------~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~--------- 251 (379)
T 3jrp_A 195 TYV---LESTLEGHSDWVRDVA----------WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK-KTLLK--------- 251 (379)
T ss_dssp EEE---EEEEECCCSSCEEEEE----------ECCCCSSSEEEEEEETTSCEEEEEESSTTSCCE-EEESS---------
T ss_pred cee---eEEEEecccCcEeEEE----------ECCCCCCCCeEEEEeCCCEEEEEeCCCCCccce-eeeec---------
Confidence 110 111111 01122222 3355 55667777899999999987532100 00000
Q ss_pred cccccccCeEEEEECCCCcEEEE-ecCCeEEEEeCCCCC
Q psy12356 219 FFSEIISSISDVKISNSGRYMIS-RDYLCVKVWDLHMES 256 (400)
Q Consensus 219 ~~~~h~~~V~~v~fSpdg~~las-~~D~tIklWD~~~~~ 256 (400)
...|...|.+++|+|+|++|++ +.|++|++||+..+.
T Consensus 252 -~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 252 -EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp -SSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred -cccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 1246788999999999999986 578999999998653
No 101
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1e-24 Score=204.45 Aligned_cols=229 Identities=14% Similarity=0.097 Sum_probs=165.7
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|+|++||+|+.||.|++|++.... ..+....+.+|.. .|.+++|. + .
T Consensus 60 ~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~--------~~~~~~~~~~~~~------------~i~~~~~~--~--~ 115 (313)
T 3odt_A 60 GFLNSVCYDSEKELLLFGGKDTMINGVPLFATS--------GEDPLYTLIGHQG------------NVCSLSFQ--D--G 115 (313)
T ss_dssp SCEEEEEEETTTTEEEEEETTSCEEEEETTCCT--------TSCC-CEECCCSS------------CEEEEEEE--T--T
T ss_pred ccEEEEEECCCCCEEEEecCCCeEEEEEeeecC--------CCCcccchhhccc------------CEEEEEec--C--C
Confidence 468999999999999999999999999987642 1233456777763 48899993 2 2
Q ss_pred eEEEeeCCCeEEEEEccCCC--cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceec
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN--MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQG 161 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~--~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
.+++++.|++|++||..... +..+...|.+++|+|.+++++++++.|+.|++||....... ........+..
T Consensus 116 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~------~~~~~~~~i~~ 189 (313)
T 3odt_A 116 VVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKT------FSGIHNDVVRH 189 (313)
T ss_dssp EEEEEETTSEEEEEETTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEE------ECSSCSSCEEE
T ss_pred EEEEEeCCCCEEEEcCCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCceEEE------EeccCcccEEE
Confidence 78888999999999922111 34567789999999944689999999999999995443110 00000111112
Q ss_pred eeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEE
Q psy12356 162 LIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMIS 241 (400)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las 241 (400)
+. ..+++. .++++.||.|++||++++... .. +.+|...|.+++|+|+|+++++
T Consensus 190 ~~----------~~~~~~-~~~~~~dg~i~i~d~~~~~~~----~~------------~~~~~~~i~~~~~~~~~~l~~~ 242 (313)
T 3odt_A 190 LA----------VVDDGH-FISCSNDGLIKLVDMHTGDVL----RT------------YEGHESFVYCIKLLPNGDIVSC 242 (313)
T ss_dssp EE----------EEETTE-EEEEETTSEEEEEETTTCCEE----EE------------EECCSSCEEEEEECTTSCEEEE
T ss_pred EE----------EcCCCe-EEEccCCCeEEEEECCchhhh----hh------------hhcCCceEEEEEEecCCCEEEE
Confidence 22 224444 555668999999999876432 11 3467789999999999975556
Q ss_pred ecCCeEEEEeCCCCCCceeeecCCC-------cCCCCcccCCCCCceeecCccccc
Q psy12356 242 RDYLCVKVWDLHMESRPVETYPTHT-------KEENGQLRDPSNITALRVPQIKPI 290 (400)
Q Consensus 242 ~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~~~~~~~~i~l~~~~~~ 290 (400)
+.|++|++||++++ .+++.+..|. +.++|++++++.++.+++|++...
T Consensus 243 ~~dg~v~iwd~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 243 GEDRTVRIWSKENG-SLKQVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp ETTSEEEEECTTTC-CEEEEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGG
T ss_pred ecCCEEEEEECCCC-ceeEEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCC
Confidence 78999999999986 4677888775 467888877788889999987543
No 102
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.93 E-value=1.1e-25 Score=214.39 Aligned_cols=205 Identities=10% Similarity=0.089 Sum_probs=145.3
Q ss_pred eeEEEEEECC--CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccC
Q psy12356 4 YMREASQRFS--DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 4 ~~v~~v~fsp--dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
+.|++|+|+| +|++||||+.|++|+|||+.++ ..+....+.+|.. .|++|+|+|+..
T Consensus 58 ~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~---------~~~~~~~~~~h~~------------~V~~v~~~p~~~ 116 (316)
T 3bg1_A 58 GPVWQVAWAHPMYGNILASCSYDRKVIIWREENG---------TWEKSHEHAGHDS------------SVNSVCWAPHDY 116 (316)
T ss_dssp SCEEEEEECCGGGSSCEEEEETTSCEEEECCSSS---------CCCEEEEECCCSS------------CCCEEEECCTTT
T ss_pred ccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCC---------cceEEEEccCCCC------------ceEEEEECCCCC
Confidence 4689999986 4999999999999999998753 1233456778873 499999999843
Q ss_pred CceEEEeeCCCeEEEEEccCCC-------cccccccEEEEEEecCC----------------CCEEEEEeCCCeEEEEec
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPTN-------MEELNEVITAAEFHPID----------------CNLFVYSSSKGTIRLCDM 138 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~~-------~~~~~~~V~sv~f~p~~----------------~~~las~s~Dg~i~lWD~ 138 (400)
+..+++++.|++|+|||++++. +..|...|.+++|+|+. +.+||+++.|++|++||+
T Consensus 117 g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~ 196 (316)
T 3bg1_A 117 GLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKE 196 (316)
T ss_dssp CSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEE
T ss_pred CcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEe
Confidence 3467778999999999997652 23456678999999973 258999999999999999
Q ss_pred ccccccccccceeccCccc--ceeceeccCchhhhhhcccCc----ceeecCCCCCeEEEeecccccccCcccccccCCC
Q psy12356 139 RAAALCDRHSKCLIEGTNC--NCQGLIVPESKREERQSSQNR----REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPE 212 (400)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~ 212 (400)
+.+... .++..+..+ .+..+.+ +|++ ..+++++.|++|++||++........
T Consensus 197 ~~~~~~----~~~~~l~~h~~~V~~v~~----------sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~-------- 254 (316)
T 3bg1_A 197 EEDGQW----KEEQKLEAHSDWVRDVAW----------APSIGLPTSTIASCSQDGRVFIWTCDDASSNTWS-------- 254 (316)
T ss_dssp CTTSCE----EEEECCBCCSSCEEEEEC----------CCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCB--------
T ss_pred CCCCcc----ceeeecccCCCceEEEEe----------cCCCCCCCceEEEEcCCCeEEEEEccCccccchh--------
Confidence 754110 011111111 1222223 2432 44667778999999998763211000
Q ss_pred CCCCcccccccccCeEEEEECCCCcEEEE-ecCCeEEEEeCCCC
Q psy12356 213 DPTNKSFFSEIISSISDVKISNSGRYMIS-RDYLCVKVWDLHME 255 (400)
Q Consensus 213 ~~~~~~~~~~h~~~V~~v~fSpdg~~las-~~D~tIklWD~~~~ 255 (400)
...+.+|...|.+++|+|+|++||+ +.|++|+||+....
T Consensus 255 ----~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~ 294 (316)
T 3bg1_A 255 ----PKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVD 294 (316)
T ss_dssp ----CCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred ----hhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence 0113367789999999999999997 57999999998744
No 103
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.93 E-value=1.6e-24 Score=212.69 Aligned_cols=227 Identities=11% Similarity=0.173 Sum_probs=164.8
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|||++||+|+.||.|+|||+.++ +.++.+.+|.. .|.+++|++ .
T Consensus 135 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~------------~v~~~~~~~----~ 187 (401)
T 4aez_A 135 TYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ-----------TKLRTMAGHQA------------RVGCLSWNR----H 187 (401)
T ss_dssp CCEEEEEECTTSSEEEEEETTSCEEEEETTTC-----------CEEEEECCCSS------------CEEEEEEET----T
T ss_pred CCEEEEEECCCCCEEEEECCCCeEEEEECcCC-----------eEEEEecCCCC------------ceEEEEECC----C
Confidence 46899999999999999999999999999753 24567778873 489999953 2
Q ss_pred eEEEeeCCCeEEEEEccCCC-----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
.+++++.|++|++||++... +..|...|.+++|+|+ +++|++++.|++|++||++++........+ ...
T Consensus 188 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~-----~~~ 261 (401)
T 4aez_A 188 VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD-GLQLASGGNDNVVQIWDARSSIPKFTKTNH-----NAA 261 (401)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTCSSEEEEECCC-----SSC
T ss_pred EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCC-CCEEEEEeCCCeEEEccCCCCCccEEecCC-----cce
Confidence 67788999999999998433 3457788999999997 479999999999999999987432211000 011
Q ss_pred eeceeccCchhhhhhcccCc-ce--eecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 159 CQGLIVPESKREERQSSQNR-RE--KEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
+..+.+ .+++ .. +++++.|+.|++||++++... ..+ .|...|.+++|+|+
T Consensus 262 v~~~~~----------~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~----~~~-------------~~~~~v~~~~~s~~ 314 (401)
T 4aez_A 262 VKAVAW----------CPWQSNLLATGGGTMDKQIHFWNAATGARV----NTV-------------DAGSQVTSLIWSPH 314 (401)
T ss_dssp CCEEEE----------CTTSTTEEEEECCTTTCEEEEEETTTCCEE----EEE-------------ECSSCEEEEEECSS
T ss_pred EEEEEE----------CCCCCCEEEEecCCCCCEEEEEECCCCCEE----EEE-------------eCCCcEEEEEECCC
Confidence 112222 2322 22 333558999999999876432 111 24467999999999
Q ss_pred CcEEEE--e-cCCeEEEEeCCCCC-CceeeecCCC-------cCCCCccc-CCCCCceeecCccccc
Q psy12356 236 GRYMIS--R-DYLCVKVWDLHMES-RPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPI 290 (400)
Q Consensus 236 g~~las--~-~D~tIklWD~~~~~-~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~ 290 (400)
|++|++ + .|++|+|||+.++. .++..+.+|. +.++|+++ +++.++++++|++...
T Consensus 315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 999986 3 48999999999753 2233456774 46788864 5778899999987543
No 104
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=99.93 E-value=7.4e-25 Score=209.23 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=162.2
Q ss_pred eeEEEEEECCC---CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE---
Q psy12356 4 YMREASQRFSD---GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--- 77 (400)
Q Consensus 4 ~~v~~v~fspd---G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s--- 77 (400)
..|.+++|+|+ |++||+|+.||+|++||+.+.+ ..+..+.+|.. .|.+++|.
T Consensus 66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~~~~~~~~------------~v~~~~~~~~~ 123 (357)
T 3i2n_A 66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE----------MPVYSVKGHKE------------IINAIDGIGGL 123 (357)
T ss_dssp SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS----------SCSEEECCCSS------------CEEEEEEESGG
T ss_pred CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC----------ccEEEEEeccc------------ceEEEeecccc
Confidence 36899999999 7999999999999999998542 13456778873 48888664
Q ss_pred ---eccCCceEEEeeCCCeEEEEEccCCC-c----ccc----cccEEEEE----EecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 78 ---RRKNQAHFLLSTNDQSFNIVDIKPTN-M----EEL----NEVITAAE----FHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 78 ---p~~~~~~~l~ss~D~tI~lWd~~~~~-~----~~~----~~~V~sv~----f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
|+++ .+++++.|++|++||+.++. . ..+ ...|++++ |+|+ +++|++++.|+.|++||++++
T Consensus 124 ~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~ 200 (357)
T 3i2n_A 124 GIGEGAP--EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQE-ERVVCAGYDNGDIKLFDLRNM 200 (357)
T ss_dssp GCC-CCC--EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-C-CCEEEEEETTSEEEEEETTTT
T ss_pred ccCCCcc--EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCC-CCEEEEEccCCeEEEEECccC
Confidence 5543 67778999999999998765 1 122 23688888 6787 479999999999999999988
Q ss_pred cccccccceeccCcccceeceeccCchhhhhhccc---CcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcc
Q psy12356 142 ALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQ---NRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKS 218 (400)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 218 (400)
..... ... ...+..+.+ .+ ++...++++.||.|++||++.+.... .+.. .
T Consensus 201 ~~~~~-----~~~-~~~v~~~~~----------~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~~-------~ 253 (357)
T 3i2n_A 201 ALRWE-----TNI-KNGVCSLEF----------DRKDISMNKLVATSLEGKFHVFDMRTQHPTK----GFAS-------V 253 (357)
T ss_dssp EEEEE-----EEC-SSCEEEEEE----------SCSSSSCCEEEEEESTTEEEEEEEEEEETTT----EEEE-------E
T ss_pred ceeee-----cCC-CCceEEEEc----------CCCCCCCCEEEEECCCCeEEEEeCcCCCccc----ceee-------e
Confidence 53211 000 011222222 24 45455566789999999999764321 1100 0
Q ss_pred cccccccCeEEEEECCCCc-EEEE-ecCCeEEEEeCCCCCC------------------ceeeecCCC-------cCCCC
Q psy12356 219 FFSEIISSISDVKISNSGR-YMIS-RDYLCVKVWDLHMESR------------------PVETYPTHT-------KEENG 271 (400)
Q Consensus 219 ~~~~h~~~V~~v~fSpdg~-~las-~~D~tIklWD~~~~~~------------------~l~~~~~h~-------~~~~g 271 (400)
.+.+|...|.+++|+|+++ +|++ +.|++|+|||++++.. ++..+.+|. +.++|
T Consensus 254 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 333 (357)
T 3i2n_A 254 SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK 333 (357)
T ss_dssp EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSS
T ss_pred ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCC
Confidence 1236788999999999999 6776 4689999999987532 355666774 45777
Q ss_pred ccc--CCCCCceeecCccc
Q psy12356 272 QLR--DPSNITALRVPQIK 288 (400)
Q Consensus 272 ~~~--~~~~~~~i~l~~~~ 288 (400)
+++ +++.++.+++|++.
T Consensus 334 ~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 334 RGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp TTEEEEEETTSEEEEEEEC
T ss_pred CeEEEEecCCCcEEEEECC
Confidence 754 46677788887763
No 105
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=99.93 E-value=5.5e-24 Score=212.03 Aligned_cols=246 Identities=14% Similarity=0.141 Sum_probs=173.7
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
+.|.+++|+|++ +||+|+.||+|+|||+.++ +.+..+.+|.. .|.+++|+|..+..
T Consensus 163 ~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~-----------~~~~~~~~h~~------------~v~~l~~~~~~~~~ 218 (464)
T 3v7d_B 163 GGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG-----------CCTHVFEGHNS------------TVRCLDIVEYKNIK 218 (464)
T ss_dssp SCEEEEEECSTT-EEEEEETTSCEEEEETTTT-----------EEEEEECCCSS------------CEEEEEEEESSSCE
T ss_pred cCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC-----------cEEEEECCCCC------------ccEEEEEecCCCCC
Confidence 468999999999 9999999999999999753 34667888873 49999999754334
Q ss_pred eEEEeeCCCeEEEEEccCCCc---------------------------ccccccEEEEEEecCCCCEEEEEeCCCeEEEE
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM---------------------------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLC 136 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~---------------------------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lW 136 (400)
.+++++.|++|++||+.++.. ..|...|.++ +|+ ++++++++.|++|++|
T Consensus 219 ~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~-~~~l~~~~~d~~i~vw 295 (464)
T 3v7d_B 219 YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTV--SGH-GNIVVSGSYDNTLIVW 295 (464)
T ss_dssp EEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEE--EEE-TTEEEEEETTSCEEEE
T ss_pred EEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEE--cCC-CCEEEEEeCCCeEEEE
Confidence 677789999999999987641 1234456665 454 3689999999999999
Q ss_pred ecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCC
Q psy12356 137 DMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTN 216 (400)
Q Consensus 137 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 216 (400)
|++++........+ ...+..+. ..+++...++++.||+|++||++++... ..
T Consensus 296 d~~~~~~~~~~~~~-----~~~v~~~~----------~~~~~~~l~sg~~dg~i~vwd~~~~~~~----~~--------- 347 (464)
T 3v7d_B 296 DVAQMKCLYILSGH-----TDRIYSTI----------YDHERKRCISASMDTTIRIWDLENGELM----YT--------- 347 (464)
T ss_dssp ETTTTEEEEEECCC-----SSCEEEEE----------EETTTTEEEEEETTSCEEEEETTTTEEE----EE---------
T ss_pred ECCCCcEEEEecCC-----CCCEEEEE----------EcCCCCEEEEEeCCCcEEEEECCCCcEE----EE---------
Confidence 99988433211100 01122222 2355556667778999999999876532 11
Q ss_pred cccccccccCeEEEEECCCCcEEEE-ecCCeEEEEeCCCCCCceeeec-CC-----CcCCCCcccCCCCCceeecCcccc
Q psy12356 217 KSFFSEIISSISDVKISNSGRYMIS-RDYLCVKVWDLHMESRPVETYP-TH-----TKEENGQLRDPSNITALRVPQIKP 289 (400)
Q Consensus 217 ~~~~~~h~~~V~~v~fSpdg~~las-~~D~tIklWD~~~~~~~l~~~~-~h-----~~~~~g~~~~~~~~~~i~l~~~~~ 289 (400)
+.+|...|.+++|+ +++|++ +.|++|++||++++.. ...+. .+ .+.+++.+++.+.++.+++|++..
T Consensus 348 ---~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~ 421 (464)
T 3v7d_B 348 ---LQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR-KFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRS 421 (464)
T ss_dssp ---ECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE-EEEEECTTCCCEEEEEECSSEEEEEETTEEEEEETTT
T ss_pred ---EeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCce-eeeecCCCCccEEEEEeCCCEEEEecCCeEEEEECCC
Confidence 34678899999998 467776 5799999999998643 33332 11 145678876544488999999865
Q ss_pred cceeeccCccceeccccccceEEEEEc
Q psy12356 290 IELTVEASPRRIFANAHTYHINSISVN 316 (400)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~i~~i~~s 316 (400)
.+.. +....+|...|++++|+
T Consensus 422 g~~~------~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 422 GKLV------HANILKDADQIWSVNFK 442 (464)
T ss_dssp CCEE------ESCTTTTCSEEEEEEEE
T ss_pred CcEE------ehhhccCCCcEEEEEec
Confidence 4332 11234678889999997
No 106
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=99.93 E-value=2.3e-24 Score=207.23 Aligned_cols=245 Identities=9% Similarity=0.087 Sum_probs=166.4
Q ss_pred ceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCC------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccc
Q psy12356 69 EKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAA 142 (400)
Q Consensus 69 ~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~ 142 (400)
+.|.+++|+|+++ .+++++.|++|+|||+++++ +..|...|++++|+|++ ++|++++.|++|++||++++.
T Consensus 9 ~~i~~~~~s~~~~--~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~ 85 (372)
T 1k8k_C 9 EPISCHAWNKDRT--QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDS-NRIVTCGTDRNAYVWTLKGRT 85 (372)
T ss_dssp SCCCEEEECTTSS--EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTT-TEEEEEETTSCEEEEEEETTE
T ss_pred CCeEEEEECCCCC--EEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCC-CEEEEEcCCCeEEEEECCCCe
Confidence 4599999999874 66677899999999998874 23567889999999975 799999999999999998874
Q ss_pred ccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccc
Q psy12356 143 LCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSE 222 (400)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (400)
..... ..... ...+..+. ..+++...++++.|+.|++||++....... .. ....+
T Consensus 86 ~~~~~--~~~~~-~~~v~~~~----------~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~-~~-----------~~~~~ 140 (372)
T 1k8k_C 86 WKPTL--VILRI-NRAARCVR----------WAPNEKKFAVGSGSRVISICYFEQENDWWV-CK-----------HIKKP 140 (372)
T ss_dssp EEEEE--ECCCC-SSCEEEEE----------ECTTSSEEEEEETTSSEEEEEEETTTTEEE-EE-----------EECTT
T ss_pred eeeeE--EeecC-CCceeEEE----------ECCCCCEEEEEeCCCEEEEEEecCCCccee-ee-----------eeecc
Confidence 21110 00000 11122222 235555566667899999999987542100 00 11235
Q ss_pred cccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccce
Q psy12356 223 IISSISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRI 301 (400)
Q Consensus 223 h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~ 301 (400)
|...|.+++|+|++++|+++ .|++|++||++.....-... . ..|... ...+.....
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~---~----------------~~~~~~----~~~~~~~~~ 197 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA---P----------------TPWGSK----MPFGELMFE 197 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCC---C----------------BTTBSC----CCTTCEEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEccccccccccc---c----------------cccccc----cchhhheEe
Confidence 67899999999999999875 68999999997542110000 0 000000 000111111
Q ss_pred eccccccceEEEEEcCCCcEEeecccc----hh----------hcccccceeEEEEccCCCEEEEecCCeEEEEeCcc
Q psy12356 302 FANAHTYHINSISVNSDQLTVEASPRG----IF----------ADAHTYHISSTSVNSDQETYLSADDLRINLWHLEI 365 (400)
Q Consensus 302 ~~~~~~~~i~~i~~s~dg~~~~~~~~~----~~----------~~gh~~~V~~i~fspDg~~las~~D~~i~lW~~~~ 365 (400)
+ .+|...|.+++|+|||+++++.+.. +| ..+|...|.+++|+|||++|+++.|+.|++|++..
T Consensus 198 ~-~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 198 S-SSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp C-CCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEET
T ss_pred c-CCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccC
Confidence 2 3678889999999999887754321 11 14788899999999999999999999999999986
No 107
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=99.93 E-value=2.1e-25 Score=215.92 Aligned_cols=206 Identities=8% Similarity=0.085 Sum_probs=140.1
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|+|++||+|+.||+|+|||+.++. ..+....+.+|. ..|.+++|+|+++
T Consensus 56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~--------~~~~~~~~~~~~------------~~v~~~~~~~~~~-- 113 (377)
T 3dwl_C 56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG--------TWKQTLVLLRLN------------RAATFVRWSPNED-- 113 (377)
T ss_dssp SCEEEEEECTTTCCEEEEETTSSEEEC--------------CCCCEEECCCCS------------SCEEEEECCTTSS--
T ss_pred ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC--------ceeeeeEecccC------------CceEEEEECCCCC--
Confidence 468999999999999999999999999998642 122344566776 3599999999864
Q ss_pred eEEEeeCCCeEEEEEccCCC-------ccc-ccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccccc---------
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-------MEE-LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDR--------- 146 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-------~~~-~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~--------- 146 (400)
.+++++.|++|++||+++++ +.. |...|++++|+|++ ++|++++.|++|++||++.......
T Consensus 114 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 192 (377)
T 3dwl_C 114 KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN-VLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSR 192 (377)
T ss_dssp CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS-SEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSC
T ss_pred EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEEEecccCCCccccccccc
Confidence 78888999999999998764 233 67789999999975 7999999999999999975422110
Q ss_pred --ccceeccCc-ccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccccc
Q psy12356 147 --HSKCLIEGT-NCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEI 223 (400)
Q Consensus 147 --~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 223 (400)
...++..+. ...+.. +..+|++...++++.||+|++||++++....... ..+.+|
T Consensus 193 ~~~~~~~~~~~~~~~v~~----------~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~------------~~~~~~ 250 (377)
T 3dwl_C 193 LPFNTVCAEYPSGGWVHA----------VGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRAL------------ITVKLS 250 (377)
T ss_dssp CCEEEEEECCCCSSSEEE----------EEECTTSSCEEEEETTTEEC-CEECSTTSCEEEC------------CCEECS
T ss_pred cchhhhhhcccCCceEEE----------EEECCCCCEEEEEeCCCcEEEEECCCCCCcceee------------EeecCC
Confidence 001111110 001112 2334666666777789999999999765311001 113477
Q ss_pred ccCeEEEEECCCCcEEEEecCCeEEEEeCCC
Q psy12356 224 ISSISDVKISNSGRYMISRDYLCVKVWDLHM 254 (400)
Q Consensus 224 ~~~V~~v~fSpdg~~las~~D~tIklWD~~~ 254 (400)
...|.+++|+|+|++|+++.++.+.+|+...
T Consensus 251 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 281 (377)
T 3dwl_C 251 QLPLRSLLWANESAIVAAGYNYSPILLQGNE 281 (377)
T ss_dssp SSCEEEEEEEETTEEEEEESSSSEEEECCCC
T ss_pred CCceEEEEEcCCCCEEEEEcCCcEEEEEeCC
Confidence 8899999999999999987665555777764
No 108
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.93 E-value=3.7e-24 Score=210.98 Aligned_cols=198 Identities=11% Similarity=0.108 Sum_probs=135.9
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeee-----eeeccCcchhhcccccccceeeEEEEEecc
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYS-----TFQSHEPEFDYLKSLEIEEKINKIRWLRRK 80 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-----~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~ 80 (400)
+.+++|+|++.++++++.|++|++||+.+++ ..+ .+.+|. ..|.+++|+|++
T Consensus 125 ~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~-----------~~~~~~~~~~~~~~------------~~v~~~~~~~~~ 181 (433)
T 3bws_A 125 PKSVRFIDNTRLAIPLLEDEGMDVLDINSGQ-----------TVRLSPPEKYKKKL------------GFVETISIPEHN 181 (433)
T ss_dssp BCCCEESSSSEEEEEBTTSSSEEEEETTTCC-----------EEEECCCHHHHTTC------------CEEEEEEEGGGT
T ss_pred ceEEEEeCCCeEEEEeCCCCeEEEEECCCCe-----------EeeecCcccccccC------------CceeEEEEcCCC
Confidence 5689999988999999999999999998643 122 233444 458999998875
Q ss_pred CCceEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 81 NQAHFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 81 ~~~~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
. .+++++.|++|++||+++++. ..+...+.+++|+|++..++++++.|++|++||++++........ .
T Consensus 182 ~--~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~------~ 253 (433)
T 3bws_A 182 E--LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK------I 253 (433)
T ss_dssp E--EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC------C
T ss_pred E--EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC------C
Confidence 3 555677899999999988763 235567999999998754556666899999999998743221110 0
Q ss_pred cceeceeccCchhhhhhcccCcceeecCC--------CCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeE
Q psy12356 157 CNCQGLIVPESKREERQSSQNRREKEDNR--------RKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSIS 228 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 228 (400)
.....+.+ .+++...+.++ .||.|++||+++++... . ..|...+.
T Consensus 254 ~~~~~~~~----------~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~----~-------------~~~~~~~~ 306 (433)
T 3bws_A 254 GLPRGLLL----------SKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLID----T-------------IGPPGNKR 306 (433)
T ss_dssp SEEEEEEE----------CTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEE----E-------------EEEEECEE
T ss_pred CCceEEEE----------cCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEe----e-------------ccCCCCcc
Confidence 11222222 24442222211 48899999998764321 1 13445788
Q ss_pred EEEECCCCcEE-EE-ecCCeEEEEeCCCCCCceeee
Q psy12356 229 DVKISNSGRYM-IS-RDYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 229 ~v~fSpdg~~l-as-~~D~tIklWD~~~~~~~l~~~ 262 (400)
+++|+|+|+.| ++ +.|++|++||+.++ .++..+
T Consensus 307 ~~~~~~~g~~l~~~~~~~~~v~v~d~~~~-~~~~~~ 341 (433)
T 3bws_A 307 HIVSGNTENKIYVSDMCCSKIEVYDLKEK-KVQKSI 341 (433)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred eEEECCCCCEEEEEecCCCEEEEEECCCC-cEEEEe
Confidence 99999999865 45 46899999999975 345554
No 109
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=99.93 E-value=3e-23 Score=198.48 Aligned_cols=247 Identities=11% Similarity=0.118 Sum_probs=161.7
Q ss_pred CcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCC----cccccccEEEEEEecC
Q psy12356 44 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPI 119 (400)
Q Consensus 44 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~ 119 (400)
|.......+.+|. ..|++++|+|++. .+++++.|++|+|||+.+++ +..|...|++++|+|+
T Consensus 20 G~~~~~~~l~~h~------------~~v~~~~~s~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~ 85 (369)
T 3zwl_B 20 GSHMKAIKLTGHE------------RPLTQVKYNKEGD--LLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCF 85 (369)
T ss_dssp CCSEEEEEEECCS------------SCEEEEEECTTSC--EEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred ccccccEEEEEee------------ceEEEEEEcCCCC--EEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCC
Confidence 3333345678887 4599999999874 67778899999999998877 3457788999999997
Q ss_pred CCCEEEEEeCCCeEEEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCC-----CeEEEee
Q psy12356 120 DCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRK-----PAIRLCD 194 (400)
Q Consensus 120 ~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----g~i~lWD 194 (400)
+ ++|++++.|++|++||++++....... ....+..+.+ .+++...+.++.+ |.|++||
T Consensus 86 ~-~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~v~~~~~----------~~~~~~l~~~~~~~~~~~g~i~~~d 148 (369)
T 3zwl_B 86 T-KYCVTGSADYSIKLWDVSNGQCVATWK------SPVPVKRVEF----------SPCGNYFLAILDNVMKNPGSINIYE 148 (369)
T ss_dssp S-SEEEEEETTTEEEEEETTTCCEEEEEE------CSSCEEEEEE----------CTTSSEEEEEECCBTTBCCEEEEEE
T ss_pred C-CEEEEEeCCCeEEEEECCCCcEEEEee------cCCCeEEEEE----------ccCCCEEEEecCCccCCCCEEEEEE
Confidence 5 799999999999999999885432111 0111222222 3455444444455 9999999
Q ss_pred cccccccCcccccccCCCCCCCccccccccc--CeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeecCCCcCCCC
Q psy12356 195 MRAAALCDRHSKFFEEPEDPTNKSFFSEIIS--SISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETYPTHTKEENG 271 (400)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g 271 (400)
++........ .... . . ....+..|.. .+.+++|+|++++|+++ .|+.|++||+++...++..+.+|.
T Consensus 149 ~~~~~~~~~~-~~~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----- 218 (369)
T 3zwl_B 149 IERDSATHEL-TKVS--E-E-PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHE----- 218 (369)
T ss_dssp EEECTTTCCE-EEEC--S-S-CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCS-----
T ss_pred ecCCccceee-cccc--c-c-eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCC-----
Confidence 9875432110 0000 0 0 0011234444 89999999999999864 689999999998545566665553
Q ss_pred cccCCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccc----hh---------hcccccce
Q psy12356 272 QLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRG----IF---------ADAHTYHI 338 (400)
Q Consensus 272 ~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~----~~---------~~gh~~~V 338 (400)
..|.+++|+|||+++++.... +| ...|...+
T Consensus 219 ------------------------------------~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~ 262 (369)
T 3zwl_B 219 ------------------------------------KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPL 262 (369)
T ss_dssp ------------------------------------SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCE
T ss_pred ------------------------------------CceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeecCCCCc
Confidence 223344444444443322110 00 01356678
Q ss_pred eEEEEccCCCEEEEe-cCC--------------eEEEEeCccCC
Q psy12356 339 SSTSVNSDQETYLSA-DDL--------------RINLWHLEITD 367 (400)
Q Consensus 339 ~~i~fspDg~~las~-~D~--------------~i~lW~~~~~~ 367 (400)
.+++|+|++++++++ .++ .|++|++...+
T Consensus 263 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 306 (369)
T 3zwl_B 263 NTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE 306 (369)
T ss_dssp EEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC
T ss_pred eeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc
Confidence 899999999999886 565 78888887544
No 110
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=99.92 E-value=1.5e-24 Score=210.93 Aligned_cols=227 Identities=11% Similarity=0.140 Sum_probs=150.5
Q ss_pred eeEEEEEECCC----C---CeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEE
Q psy12356 4 YMREASQRFSD----G---ELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 76 (400)
Q Consensus 4 ~~v~~v~fspd----G---~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~ 76 (400)
..|.+++|+|+ | ++||+++.||+|++||+.+.... ....+..+.+|.... ....|.+++|
T Consensus 63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~------~~~~~~~~~~~~~~~-------~~~~v~~~~~ 129 (397)
T 1sq9_A 63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDET------KKVIFEKLDLLDSDM-------KKHSFWALKW 129 (397)
T ss_dssp TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTT------CCEEEEEECCSCTTG-------GGSCEEEEEE
T ss_pred CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccc------ccccceeeccccccc-------CCCcEEEEEE
Confidence 35899999999 9 99999999999999998754310 011145666663100 0135999999
Q ss_pred E----eccCCce-EEEeeCCCeEEEEEccC------CCc-c---------------cccccEEEEEEecCCCCEEEEEeC
Q psy12356 77 L----RRKNQAH-FLLSTNDQSFNIVDIKP------TNM-E---------------ELNEVITAAEFHPIDCNLFVYSSS 129 (400)
Q Consensus 77 s----p~~~~~~-~l~ss~D~tI~lWd~~~------~~~-~---------------~~~~~V~sv~f~p~~~~~las~s~ 129 (400)
+ |+++ . +++++.|+.|++||+.+ +.. . .+...|++++|+|++ +|++++.
T Consensus 130 ~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~ 205 (397)
T 1sq9_A 130 GASNDRLLS--HRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFN 205 (397)
T ss_dssp ECCC----C--EEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--EEEEECT
T ss_pred eeccCCCCc--eEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--eEEEEeC
Confidence 9 8764 6 77788999999999987 442 2 135678999999975 8999999
Q ss_pred CCeEEEEecccccccccccceeccC--cccceeceeccCchhhhhhcccCcceeecCCCC---CeEEEeecccccccCcc
Q psy12356 130 KGTIRLCDMRAAALCDRHSKCLIEG--TNCNCQGLIVPESKREERQSSQNRREKEDNRRK---PAIRLCDMRAAALCDRH 204 (400)
Q Consensus 130 Dg~i~lWD~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---g~i~lWD~~~~~~~~~~ 204 (400)
|+.|++||++++........ .... ....+..+. ..+++...++++.| |.|++||++++...
T Consensus 206 dg~i~i~d~~~~~~~~~~~~-~~~h~~~~~~i~~i~----------~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~--- 271 (397)
T 1sq9_A 206 NGTVQISELSTLRPLYNFES-QHSMINNSNSIRSVK----------FSPQGSLLAIAHDSNSFGCITLYETEFGERI--- 271 (397)
T ss_dssp TSEEEEEETTTTEEEEEEEC-CC---CCCCCEEEEE----------ECSSTTEEEEEEEETTEEEEEEEETTTCCEE---
T ss_pred CCcEEEEECCCCceeEEEec-cccccccCCccceEE----------ECCCCCEEEEEecCCCCceEEEEECCCCccc---
Confidence 99999999998743322111 0000 011122222 23555556666678 99999999876432
Q ss_pred cccccCCCCCCCccc-ccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeeec
Q psy12356 205 SKFFEEPEDPTNKSF-FSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETYP 263 (400)
Q Consensus 205 ~~~~~~~~~~~~~~~-~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~~ 263 (400)
..+..+..+..... ...|...|.+++|+|++++|+++ .|++|+|||++++ .++..+.
T Consensus 272 -~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~ 330 (397)
T 1sq9_A 272 -GSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK-ERITTLN 330 (397)
T ss_dssp -EEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT-EEEEEEE
T ss_pred -ceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC-ceeEEEe
Confidence 22221100000000 00177899999999999999975 6899999999986 4678887
No 111
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=99.92 E-value=4.9e-23 Score=204.50 Aligned_cols=271 Identities=11% Similarity=0.136 Sum_probs=187.4
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+ +++|++|+.||+|++||+.++ +.+.++.+|.. .|.+++|++ .
T Consensus 160 ~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~-----------~~~~~~~~h~~------------~v~~~~~~~----~ 210 (445)
T 2ovr_B 160 GGVWSSQMR--DNIIISGSTDRTLKVWNAETG-----------ECIHTLYGHTS------------TVRCMHLHE----K 210 (445)
T ss_dssp SCEEEEEEE--TTEEEEEETTSCEEEEETTTT-----------EEEEEECCCSS------------CEEEEEEET----T
T ss_pred CCEEEEEec--CCEEEEEeCCCeEEEEECCcC-----------cEEEEECCCCC------------cEEEEEecC----C
Confidence 457899997 679999999999999999753 34567888874 488999963 2
Q ss_pred eEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+++++.|++|++||+.+++. ..|...|.+++| + ++++++++.|++|++||++++........+ ...+
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~v 282 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--D-GRRVVSGAYDFMVKVWDPETETCLHTLQGH-----TNRV 282 (445)
T ss_dssp EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--C-SSCEEEEETTSCEEEEEGGGTEEEEEECCC-----SSCE
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--C-CCEEEEEcCCCEEEEEECCCCcEeEEecCC-----CCce
Confidence 688899999999999998763 456778999999 3 367999999999999999988433211100 0011
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
..+.+ ++...++++.||.|++||++++... .. +.+|...+.++.+ ++++|
T Consensus 283 ~~~~~------------~~~~l~~~~~d~~i~i~d~~~~~~~----~~------------~~~~~~~v~~~~~--~~~~l 332 (445)
T 2ovr_B 283 YSLQF------------DGIHVVSGSLDTSIRVWDVETGNCI----HT------------LTGHQSLTSGMEL--KDNIL 332 (445)
T ss_dssp EEEEE------------CSSEEEEEETTSCEEEEETTTCCEE----EE------------ECCCCSCEEEEEE--ETTEE
T ss_pred EEEEE------------CCCEEEEEeCCCeEEEEECCCCCEE----EE------------EcCCcccEEEEEE--eCCEE
Confidence 11111 3334556668999999999876532 11 2356678887777 45677
Q ss_pred EE-ecCCeEEEEeCCCCCCceeeecC---CCc-----CCCCcc-cCCCCCceeecCcccccceeeccCccceeccccccc
Q psy12356 240 IS-RDYLCVKVWDLHMESRPVETYPT---HTK-----EENGQL-RDPSNITALRVPQIKPIELTVEASPRRIFANAHTYH 309 (400)
Q Consensus 240 as-~~D~tIklWD~~~~~~~l~~~~~---h~~-----~~~g~~-~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
++ +.|++|++||++++ .++..+.+ |.. ..++.+ ++++.++.+++|++...+....- ......+|...
T Consensus 333 ~~~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~~~~~~~ 409 (445)
T 2ovr_B 333 VSGNADSTVKIWDIKTG-QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNL--VTLESGGSGGV 409 (445)
T ss_dssp EEEETTSCEEEEETTTC-CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEE--EECTTGGGTCE
T ss_pred EEEeCCCeEEEEECCCC-cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceeeee--eccccCCCCce
Confidence 76 56999999999986 46788876 431 124554 45788999999998654332100 00001367888
Q ss_pred eEEEEEcCCCcEEeecccchhhccc-ccceeEEEEccCCC
Q psy12356 310 INSISVNSDQLTVEASPRGIFADAH-TYHISSTSVNSDQE 348 (400)
Q Consensus 310 i~~i~~s~dg~~~~~~~~~~~~~gh-~~~V~~i~fspDg~ 348 (400)
|++++|+|+|.++++++.. |. ...|.-+.|++|.+
T Consensus 410 v~~~~~s~~~~~la~~~~d----g~~~~~l~v~df~~~~~ 445 (445)
T 2ovr_B 410 VWRIRASNTKLVCAVGSRN----GTEETKLLVLDFDVDMK 445 (445)
T ss_dssp EEEEEECSSEEEEEEECSS----SSSCCEEEEEECCCCC-
T ss_pred EEEEEecCCEEEEEEcccC----CCCccEEEEEECCCCCC
Confidence 9999999999998866542 21 23465677777653
No 112
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.92 E-value=3.1e-23 Score=197.26 Aligned_cols=242 Identities=14% Similarity=0.131 Sum_probs=155.2
Q ss_pred ceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCC----c---ccccccEEEEEEecCCCC-EEEEEeCCCeEEEEec-c
Q psy12356 69 EKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN----M---EELNEVITAAEFHPIDCN-LFVYSSSKGTIRLCDM-R 139 (400)
Q Consensus 69 ~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~----~---~~~~~~V~sv~f~p~~~~-~las~s~Dg~i~lWD~-~ 139 (400)
+.|.+++|+|+++ .+++++.|++|+|||+.++. . ..|...|++++|+|+ ++ +|++++.|+.|++||+ .
T Consensus 12 ~~v~~~~~s~~~~--~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~~wd~~~ 88 (342)
T 1yfq_A 12 DYISDIKIIPSKS--LLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN-TDLQIYVGTVQGEILKVDLIG 88 (342)
T ss_dssp SCEEEEEEEGGGT--EEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEES-SSEEEEEEETTSCEEEECSSS
T ss_pred CcEEEEEEcCCCC--EEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCC-CCcEEEEEcCCCeEEEEEecc
Confidence 4599999999874 67788999999999998776 2 346678999999998 47 8999999999999999 7
Q ss_pred cccccccccceeccC-cccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeeccc---------ccccCccccccc
Q psy12356 140 AAALCDRHSKCLIEG-TNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRA---------AALCDRHSKFFE 209 (400)
Q Consensus 140 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~---------~~~~~~~~~~~~ 209 (400)
++.... +... -...+..+.+ .+ +...++++.|+.|++||++. +... ..
T Consensus 89 ~~~~~~-----~~~~~~~~~v~~l~~----------~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~----~~-- 146 (342)
T 1yfq_A 89 SPSFQA-----LTNNEANLGICRICK----------YG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNS----NN-- 146 (342)
T ss_dssp SSSEEE-----CBSCCCCSCEEEEEE----------ET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCS----SS--
T ss_pred CCceEe-----ccccCCCCceEEEEe----------CC-CCEEEEEcCCCeEEEEcccccccccccccCCee----eE--
Confidence 763210 1110 0011222222 23 44455566899999999986 3211 11
Q ss_pred CCCCCCCcccccccccCeEEEEECCCCcEEEEecCCeEEEEeCCC-CCCceee-ecCCC-------cCC-CCccc-CCCC
Q psy12356 210 EPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLHM-ESRPVET-YPTHT-------KEE-NGQLR-DPSN 278 (400)
Q Consensus 210 ~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~~D~tIklWD~~~-~~~~l~~-~~~h~-------~~~-~g~~~-~~~~ 278 (400)
+ .|...|.+++|+|++ +++++.|++|++||+++ +..+... ...|. +.+ +|+++ +++.
T Consensus 147 ----------~-~~~~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~ 214 (342)
T 1yfq_A 147 ----------T-KVKNKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI 214 (342)
T ss_dssp ----------S-SSCCCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET
T ss_pred ----------E-eeCCceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec
Confidence 1 256789999999998 44456799999999997 5432222 22232 344 55543 3455
Q ss_pred CceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEe-cCCe
Q psy12356 279 ITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLR 357 (400)
Q Consensus 279 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~ 357 (400)
++.+++|++..............+ .+|.. .....+|...|++++|+|||++|+++ .|++
T Consensus 215 dg~i~i~~~~~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 274 (342)
T 1yfq_A 215 DGRVAVEFFDDQGDDYNSSKRFAF-RCHRL-------------------NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI 274 (342)
T ss_dssp TSEEEEEECCTTCCSTTCTTCEEE-ECCCC-------------------CTTCCSSCCCEEEEEECTTTCCEEEEETTSC
T ss_pred CCcEEEEEEcCCCcccccccceee-ecccc-------------------cccccccceeEEEEEEcCCCCEEEEecCCce
Confidence 566666655322000000000000 01100 00012466799999999999999997 6999
Q ss_pred EEEEeCccCC
Q psy12356 358 INLWHLEITD 367 (400)
Q Consensus 358 i~lW~~~~~~ 367 (400)
|++||+...+
T Consensus 275 i~vwd~~~~~ 284 (342)
T 1yfq_A 275 ISCWNLQTRK 284 (342)
T ss_dssp EEEEETTTTE
T ss_pred EEEEcCccHh
Confidence 9999998644
No 113
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.92 E-value=1.7e-22 Score=196.29 Aligned_cols=265 Identities=9% Similarity=0.089 Sum_probs=166.5
Q ss_pred CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEE-EeeCCCe
Q psy12356 15 GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFL-LSTNDQS 93 (400)
Q Consensus 15 G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l-~ss~D~t 93 (400)
+.++++++.|++|++||+.++ +++..+.+|. .+.+++|+|++. .++ +++.|++
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~-----------~~~~~~~~~~-------------~~~~~~~s~dg~--~l~~~~~~d~~ 55 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSN-----------KVTATIPVGS-------------NPMGAVISPDGT--KVYVANAHSND 55 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTT-----------EEEEEEECSS-------------SEEEEEECTTSS--EEEEEEGGGTE
T ss_pred CEEEEEcCCCCEEEEEECCCC-----------eEEEEeecCC-------------CcceEEECCCCC--EEEEECCCCCe
Confidence 357889999999999999753 3455666664 378999999874 454 4568999
Q ss_pred EEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceeceeccCchhh
Q psy12356 94 FNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKRE 170 (400)
Q Consensus 94 I~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (400)
|++||+.++++. .+...+.+++|+|++..++++++.|++|++||+.+++...... . ......+.+
T Consensus 56 i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~----~--~~~~~~~~~------ 123 (391)
T 1l0q_A 56 VSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVK----T--GKSPLGLAL------ 123 (391)
T ss_dssp EEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----C--SSSEEEEEE------
T ss_pred EEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEe----C--CCCcceEEE------
Confidence 999999888732 2234789999999875455666678999999999885422110 0 011122222
Q ss_pred hhhcccCcc-eeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE-Ee-cCCeE
Q psy12356 171 ERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI-SR-DYLCV 247 (400)
Q Consensus 171 ~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la-s~-~D~tI 247 (400)
.+++. ..++++.++.|++||+++++.. ..+ ..| ..+.+++|+|+|++|+ ++ .|++|
T Consensus 124 ----s~dg~~l~~~~~~~~~v~~~d~~~~~~~----~~~------------~~~-~~~~~~~~~~dg~~l~~~~~~~~~v 182 (391)
T 1l0q_A 124 ----SPDGKKLYVTNNGDKTVSVINTVTKAVI----NTV------------SVG-RSPKGIAVTPDGTKVYVANFDSMSI 182 (391)
T ss_dssp ----CTTSSEEEEEETTTTEEEEEETTTTEEE----EEE------------ECC-SSEEEEEECTTSSEEEEEETTTTEE
T ss_pred ----CCCCCEEEEEeCCCCEEEEEECCCCcEE----EEE------------ecC-CCcceEEECCCCCEEEEEeCCCCEE
Confidence 34543 3355677999999999876532 111 112 4578999999999874 54 57999
Q ss_pred EEEeCCCCCCceeeecCCC------cCCCCccc-CCC---CCceeecCcccccceeeccCccceeccccccceEEEEEcC
Q psy12356 248 KVWDLHMESRPVETYPTHT------KEENGQLR-DPS---NITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNS 317 (400)
Q Consensus 248 klWD~~~~~~~l~~~~~h~------~~~~g~~~-~~~---~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~ 317 (400)
++||++++ .++..+..+. +.++|+++ .++ .++.+++|++..
T Consensus 183 ~~~d~~~~-~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~---------------------------- 233 (391)
T 1l0q_A 183 SVIDTVTN-SVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---------------------------- 233 (391)
T ss_dssp EEEETTTT-EEEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT----------------------------
T ss_pred EEEECCCC-eEEEEEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCC----------------------------
Confidence 99999975 3444443221 12222211 100 122222222110
Q ss_pred CCcEEeecccchhhcccccceeEEEEccCCCEE-EEe-cCCeEEEEeCccCCeeEEEEeec
Q psy12356 318 DQLTVEASPRGIFADAHTYHISSTSVNSDQETY-LSA-DDLRINLWHLEITDQSFNIVDIK 376 (400)
Q Consensus 318 dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~l-as~-~D~~i~lW~~~~~~~~~~~~~~~ 376 (400)
++.+ ..+ ..|. .+.+++|+|||++| +++ .|++|++||+.+.+ ....+...
T Consensus 234 -~~~~-----~~~-~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~-~~~~~~~~ 285 (391)
T 1l0q_A 234 -NKIT-----ARI-PVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT-ITATMAVG 285 (391)
T ss_dssp -TEEE-----EEE-ECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEEEECS
T ss_pred -CeEE-----EEE-ecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCCc-EEEEEECC
Confidence 0000 000 1333 47899999999987 565 69999999998643 45555443
No 114
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=99.92 E-value=7.9e-24 Score=205.57 Aligned_cols=236 Identities=17% Similarity=0.187 Sum_probs=163.5
Q ss_pred CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe-ccCCceEEEeeCCCeEEEEEccCC
Q psy12356 24 GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR-RKNQAHFLLSTNDQSFNIVDIKPT 102 (400)
Q Consensus 24 Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp-~~~~~~~l~ss~D~tI~lWd~~~~ 102 (400)
+++++||+.+... ....+.+|. +.|++++|+| +++ .+++++.|++|+|||+.++
T Consensus 22 ~~~~~v~~~~~~~-----------~~~~~~~h~------------~~v~~~~~s~~~~~--~l~~~~~dg~i~iw~~~~~ 76 (408)
T 4a11_B 22 ESTRRVLGLELNK-----------DRDVERIHG------------GGINTLDIEPVEGR--YMLSGGSDGVIVLYDLENS 76 (408)
T ss_dssp HHHHHHHTEEECT-----------TEEECCCCS------------SCEEEEEECTTTCC--EEEEEETTSCEEEEECCCC
T ss_pred cCcceeeccccCc-----------ceeeeeccC------------CcEEEEEEecCCCC--EEEEEcCCCeEEEEECCCC
Confidence 4557777765321 234566786 4599999999 764 6777899999999999877
Q ss_pred Cc----c-------------cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceeceecc
Q psy12356 103 NM----E-------------ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVP 165 (400)
Q Consensus 103 ~~----~-------------~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (400)
.. . .|...|.+++|+|+++++|++++.|++|++||++++....... . ......+.+.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~-~~~~~~~~~~ 150 (408)
T 4a11_B 77 SRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----F-EETVYSHHMS 150 (408)
T ss_dssp SSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----C-SSCEEEEEEC
T ss_pred cccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----C-CCceeeeEee
Confidence 52 1 2667899999999667899999999999999999885322110 0 0011111111
Q ss_pred CchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCc-EEEE-ec
Q psy12356 166 ESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGR-YMIS-RD 243 (400)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~-~las-~~ 243 (400)
+ ..++....+.++.||.|++||++++... .. +.+|...|.+++|+|+++ ++++ +.
T Consensus 151 ~-------~~~~~~~~~~~~~~~~v~~~d~~~~~~~----~~------------~~~~~~~v~~~~~~~~~~~ll~~~~~ 207 (408)
T 4a11_B 151 P-------VSTKHCLVAVGTRGPKVQLCDLKSGSCS----HI------------LQGHRQEILAVSWSPRYDYILATASA 207 (408)
T ss_dssp S-------SCSSCCEEEEEESSSSEEEEESSSSCCC----EE------------ECCCCSCEEEEEECSSCTTEEEEEET
T ss_pred c-------CCCCCcEEEEEcCCCeEEEEeCCCccee----ee------------ecCCCCcEEEEEECCCCCcEEEEEcC
Confidence 0 1123334556678999999999875431 11 346778999999999998 4665 57
Q ss_pred CCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEe
Q psy12356 244 YLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVE 323 (400)
Q Consensus 244 D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~ 323 (400)
|++|++||++++..++..+..|..... . . .
T Consensus 208 dg~i~i~d~~~~~~~~~~~~~~~~~~~-----------~--------------~------~------------------- 237 (408)
T 4a11_B 208 DSRVKLWDVRRASGCLITLDQHNGKKS-----------Q--------------A------V------------------- 237 (408)
T ss_dssp TSCEEEEETTCSSCCSEECCTTTTCSC-----------C--------------C------T-------------------
T ss_pred CCcEEEEECCCCCcccccccccccccc-----------e--------------e------e-------------------
Confidence 899999999987656666544321000 0 0 0
Q ss_pred ecccchhhcccccceeEEEEccCCCEEEEe-cCCeEEEEeCccCC
Q psy12356 324 ASPRGIFADAHTYHISSTSVNSDQETYLSA-DDLRINLWHLEITD 367 (400)
Q Consensus 324 ~~~~~~~~~gh~~~V~~i~fspDg~~las~-~D~~i~lW~~~~~~ 367 (400)
.....+|...|.+++|+|||++|+++ .|+.|++||+...+
T Consensus 238 ----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 278 (408)
T 4a11_B 238 ----ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGE 278 (408)
T ss_dssp ----TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC
T ss_pred ----ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCc
Confidence 00113688899999999999999997 69999999998644
No 115
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.91 E-value=6.3e-24 Score=208.47 Aligned_cols=210 Identities=10% Similarity=-0.001 Sum_probs=134.8
Q ss_pred eeEEEEEECC--------CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEE
Q psy12356 4 YMREASQRFS--------DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 75 (400)
Q Consensus 4 ~~v~~v~fsp--------dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 75 (400)
+.|++|+|+| ||++|||||.|++|+|||+.+.. ....+.+|. ..|.+|+
T Consensus 137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~-----------~~~~~~~~~------------~~v~~v~ 193 (393)
T 4gq1_A 137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEG-----------PILAGYPLS------------SPGISVQ 193 (393)
T ss_dssp SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTE-----------EEEEEEECS------------SCEEEEE
T ss_pred CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCc-----------eeeeecCCC------------CCcEEEE
Confidence 4699999998 99999999999999999987531 233445555 3489999
Q ss_pred EEeccCCceEEEeeCCCeEEEEEccCCCcc-----------------------------cccccEEEEEEecCCCCEEEE
Q psy12356 76 WLRRKNQAHFLLSTNDQSFNIVDIKPTNME-----------------------------ELNEVITAAEFHPIDCNLFVY 126 (400)
Q Consensus 76 ~sp~~~~~~~l~ss~D~tI~lWd~~~~~~~-----------------------------~~~~~V~sv~f~p~~~~~las 126 (400)
|+|++. ..+++++.|++|+|||+.+++.. .+...|.++.|++.++..+++
T Consensus 194 ~~p~~~-~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s 272 (393)
T 4gq1_A 194 FRPSNP-NQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILA 272 (393)
T ss_dssp EETTEE-EEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEE
T ss_pred ECCCCC-ceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEE
Confidence 999752 35667889999999999876410 123457788987434588999
Q ss_pred EeCCCeEEEEecccccccccccce---eccCcc-cceeceeccCchhhhhh-cccCcceeecCCCCCeEEEeeccccccc
Q psy12356 127 SSSKGTIRLCDMRAAALCDRHSKC---LIEGTN-CNCQGLIVPESKREERQ-SSQNRREKEDNRRKPAIRLCDMRAAALC 201 (400)
Q Consensus 127 ~s~Dg~i~lWD~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~dg~i~lWD~~~~~~~ 201 (400)
++.|+++++||++.+........+ +..... ................. ...++...++++.||+|+|||+.++...
T Consensus 273 ~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~ 352 (393)
T 4gq1_A 273 MCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN 352 (393)
T ss_dssp ECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC
T ss_pred EeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE
Confidence 999999999999887432211100 000000 00000000000000001 1124455677789999999999876432
Q ss_pred CcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEEecCCeEEEEeCC
Q psy12356 202 DRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLH 253 (400)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~~D~tIklWD~~ 253 (400)
. . +.+|..+|.+|+|||||++||++.++.+.||.+.
T Consensus 353 ~----~------------~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~ 388 (393)
T 4gq1_A 353 S----I------------PIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM 388 (393)
T ss_dssp E----E------------EEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred E----E------------ecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence 1 1 2356789999999999999998877778888765
No 116
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.91 E-value=1.1e-22 Score=191.97 Aligned_cols=224 Identities=12% Similarity=0.071 Sum_probs=150.0
Q ss_pred eeEEEEEECC--CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccC
Q psy12356 4 YMREASQRFS--DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 4 ~~v~~v~fsp--dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
..|.+++|+| ||++||+|+.||+|+|||+..+.... .....+....+.+|. ..|.+++|+|+.+
T Consensus 58 ~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~--~~~~~~~~~~~~~~~------------~~v~~~~~~~~~~ 123 (351)
T 3f3f_A 58 SSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEEC--SGRRWNKLCTLNDSK------------GSLYSVKFAPAHL 123 (351)
T ss_dssp SCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTT--SSCSEEEEEEECCCS------------SCEEEEEECCGGG
T ss_pred CcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccc--cccCcceeeeecccC------------CceeEEEEcCCCC
Confidence 4689999999 69999999999999999998643110 001123455677776 4599999999822
Q ss_pred CceEEEeeCCCeEEEEEccCCCcc-----------------cccccEEEEEEecC--CCCEEEEEeCCCeEEEEeccccc
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPTNME-----------------ELNEVITAAEFHPI--DCNLFVYSSSKGTIRLCDMRAAA 142 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~~~~-----------------~~~~~V~sv~f~p~--~~~~las~s~Dg~i~lWD~~~~~ 142 (400)
+..+++++.|++|++||+++++.. .+...+.+++|+|+ ++.++++++.|+.+.+|+...+.
T Consensus 124 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 203 (351)
T 3f3f_A 124 GLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGK 203 (351)
T ss_dssp CSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSC
T ss_pred CcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCc
Confidence 236778899999999999876521 23456899999997 35789999999999888877763
Q ss_pred ccccccceeccCcc--cceeceeccCchhhhhhcccCc----ceeecCCCCCeEEEeecccccccCcccccc--------
Q psy12356 143 LCDRHSKCLIEGTN--CNCQGLIVPESKREERQSSQNR----REKEDNRRKPAIRLCDMRAAALCDRHSKFF-------- 208 (400)
Q Consensus 143 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~-------- 208 (400)
.. .+..+.. ..+..+.+ .+++ ...++++.||.|++||++.+..........
T Consensus 204 ~~-----~~~~~~~h~~~i~~~~~----------~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 268 (351)
T 3f3f_A 204 LH-----VAAKLPGHKSLIRSISW----------APSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDN 268 (351)
T ss_dssp EE-----EEEECCCCCSCEEEEEE----------CCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------
T ss_pred ee-----eeeecCCCCcceeEEEE----------CCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCC
Confidence 21 1111111 11222222 3554 456677789999999998742210000000
Q ss_pred --------------------cCCC--CCCCcccccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCC
Q psy12356 209 --------------------EEPE--DPTNKSFFSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHMES 256 (400)
Q Consensus 209 --------------------~~~~--~~~~~~~~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~ 256 (400)
.... .......+.+|...|.+++|+|+|++|+++ .|++|+|||+.++.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 339 (351)
T 3f3f_A 269 SADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSN 339 (351)
T ss_dssp ----------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTS
T ss_pred CcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCc
Confidence 0000 000011145788999999999999999975 69999999999864
No 117
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.91 E-value=1.7e-22 Score=193.19 Aligned_cols=245 Identities=9% Similarity=0.088 Sum_probs=155.3
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|+|++||+|+.||+|+|||+.+.+ .. .+.+|. ..|.+++|+|..++.
T Consensus 87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-----------~~-~~~~~~------------~~v~~~~~~~~~~~~ 142 (368)
T 3mmy_A 87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQ-----------AI-QIAQHD------------APVKTIHWIKAPNYS 142 (368)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-----------EE-EEEECS------------SCEEEEEEEECSSCE
T ss_pred CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCC-----------ce-eecccc------------CceEEEEEEeCCCCC
Confidence 468999999999999999999999999998532 22 345565 459999994433233
Q ss_pred eEEEeeCCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccccee
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQ 160 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
.+++++.|++|++||+++++.. .....+.++.+.+ ..++.++.|+.+++||++....... ...........
T Consensus 143 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~ 216 (368)
T 3mmy_A 143 CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFR---RIESPLKHQHR 216 (368)
T ss_dssp EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEE---ECCCSCSSCEE
T ss_pred EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecC---CeeEEEeCCCcEEEEEeccccchhh---hccccccCCCc
Confidence 5777889999999999887632 1234566777765 3678889999999999987632110 00000000000
Q ss_pred ceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE
Q psy12356 161 GLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI 240 (400)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la 240 (400)
...+... ....+++ .++++.||.|++||++..... .....+..+..........+|...|.+++|+|+|++|+
T Consensus 217 ~~~~~~~----~~~~~~~--~~~~~~dg~i~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~ 289 (368)
T 3mmy_A 217 CVAIFKD----KQNKPTG--FALGSIEGRVAIHYINPPNPA-KDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLA 289 (368)
T ss_dssp EEEEEEC----TTSCEEE--EEEEETTSEEEEEESSCSCHH-HHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEE
T ss_pred eEEEccc----CCCCCCe--EEEecCCCcEEEEecCCCCcc-ccceeeeeeecccccccccccccceEEEEEecCCCEEE
Confidence 0000000 0001112 445567999999999875320 11112221110000001123445899999999999998
Q ss_pred Ee-cCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCC
Q psy12356 241 SR-DYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQ 319 (400)
Q Consensus 241 s~-~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg 319 (400)
++ .|++|+|||++++ .++..+.+ |...|.+++|+|||
T Consensus 290 s~~~dg~i~iwd~~~~-~~~~~~~~-----------------------------------------~~~~v~~~~~s~~g 327 (368)
T 3mmy_A 290 TVGSDGRFSFWDKDAR-TKLKTSEQ-----------------------------------------LDQPISACCFNHNG 327 (368)
T ss_dssp EEETTSCEEEEETTTT-EEEEECCC-----------------------------------------CSSCEEEEEECTTS
T ss_pred EEccCCeEEEEECCCC-cEEEEecC-----------------------------------------CCCCceEEEECCCC
Confidence 75 6999999999975 34554433 44457899999999
Q ss_pred cEEeeccc
Q psy12356 320 LTVEASPR 327 (400)
Q Consensus 320 ~~~~~~~~ 327 (400)
++|++++.
T Consensus 328 ~~l~~~s~ 335 (368)
T 3mmy_A 328 NIFAYASS 335 (368)
T ss_dssp SCEEEEEC
T ss_pred CeEEEEec
Confidence 98876553
No 118
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.7e-22 Score=198.13 Aligned_cols=206 Identities=12% Similarity=0.096 Sum_probs=140.9
Q ss_pred eEEEEEECCCCCeE-EEecCCCeEEEEEcC--CCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccC
Q psy12356 5 MREASQRFSDGELL-ATGDKGGRVVIFQRD--PLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 5 ~v~~v~fspdG~~L-as~s~Dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
.|++++|+|||++| |+|+.||+|+|||+. ++. .++.+..|.. ...|.+++|+|++.
T Consensus 104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~-----------~~~~~~~~~~----------~~~v~~~~~sp~~~ 162 (450)
T 2vdu_B 104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKN-----------VLKLRKRFCF----------SKRPNAISIAEDDT 162 (450)
T ss_dssp CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSS-----------CEEEEEEEEC----------SSCEEEEEECTTSS
T ss_pred ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCc-----------eeeeeecccC----------CCCceEEEEcCCCC
Confidence 59999999999996 999999999999997 432 2445543321 14589999999874
Q ss_pred CceEEEeeCCCeEEEEEccCCCc--------ccccccEEEEEEecC--CCCEEEEEeCCCeEEEEeccccccccccccee
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPTNM--------EELNEVITAAEFHPI--DCNLFVYSSSKGTIRLCDMRAAALCDRHSKCL 151 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~~~--------~~~~~~V~sv~f~p~--~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~ 151 (400)
.+++++.|+.|++||+.++.. ..|...|++++|+|+ ++.+|++++.|++|++||++++...... .
T Consensus 163 --~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~---~ 237 (450)
T 2vdu_B 163 --TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKW---L 237 (450)
T ss_dssp --EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEE---C
T ss_pred --EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeee---e
Confidence 777788999999999976652 346678999999997 1378999999999999999987432210 0
Q ss_pred ccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCC---------C-CC---Ccc
Q psy12356 152 IEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPE---------D-PT---NKS 218 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~---------~-~~---~~~ 218 (400)
... ...+..+ .++ ++...++++.|++|++||++++.... .+..+. . +. ...
T Consensus 238 ~~h-~~~v~~~----------~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (450)
T 2vdu_B 238 FGH-KHFVSSI----------CCG-KDYLLLSAGGDDKIFAWDWKTGKNLS----TFDYNSLIKPYLNDQHLAPPRFQNE 301 (450)
T ss_dssp CCC-SSCEEEE----------EEC-STTEEEEEESSSEEEEEETTTCCEEE----EEECHHHHGGGCCTTSBC-------
T ss_pred cCC-CCceEEE----------EEC-CCCEEEEEeCCCeEEEEECCCCcEee----eecchhhhhhhhhhccccccccccc
Confidence 000 0111122 223 44455666789999999998865421 111000 0 00 000
Q ss_pred cccccccCeEEEEECCCCcEEEE-e-cCCeEEEEeC
Q psy12356 219 FFSEIISSISDVKISNSGRYMIS-R-DYLCVKVWDL 252 (400)
Q Consensus 219 ~~~~h~~~V~~v~fSpdg~~las-~-~D~tIklWD~ 252 (400)
.-..+...|.+++|+|++++|++ + .|++|+|||+
T Consensus 302 ~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 302 NNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ---CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred ccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence 00012356899999999999986 4 6899999999
No 119
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.4e-23 Score=219.21 Aligned_cols=208 Identities=13% Similarity=0.151 Sum_probs=150.4
Q ss_pred eeEEEEEECCC--CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccC
Q psy12356 4 YMREASQRFSD--GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 4 ~~v~~v~fspd--G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
..|++++|+|+ |++||+|+.||+|+|||+.++ .......+.+|. ..|.+++|+|+..
T Consensus 54 ~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~---------~~~~~~~~~~h~------------~~V~~v~~sp~~~ 112 (753)
T 3jro_A 54 GPVWRVDWAHPKFGTILASCSYDGKVLIWKEENG---------RWSQIAVHAVHS------------ASVNSVQWAPHEY 112 (753)
T ss_dssp SCEEEEEECCTTSCSEEEEEETTSCEEEEEEETT---------EEEEEEEECCCS------------SCEEEEEECCGGG
T ss_pred CceEEEEecCCCCCCEEEEEeCCCeEEEEECCCC---------cccccccccCCC------------CCeEEEEECCCCC
Confidence 46899999998 999999999999999999753 222455667776 4599999999832
Q ss_pred CceEEEeeCCCeEEEEEccCCC------cccccccEEEEEEecC------------CCCEEEEEeCCCeEEEEecccccc
Q psy12356 82 QAHFLLSTNDQSFNIVDIKPTN------MEELNEVITAAEFHPI------------DCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 82 ~~~~l~ss~D~tI~lWd~~~~~------~~~~~~~V~sv~f~p~------------~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
+..+++++.|++|++||+.++. ...|...|++++|+|. ++.++++++.||+|++||++++..
T Consensus 113 ~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~ 192 (753)
T 3jro_A 113 GPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQ 192 (753)
T ss_dssp CSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTT
T ss_pred CCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcc
Confidence 2377888999999999998773 2346678999999994 257899999999999999988732
Q ss_pred cccccceeccCc--ccceeceeccCchhhhhhcccC---cceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcc
Q psy12356 144 CDRHSKCLIEGT--NCNCQGLIVPESKREERQSSQN---RREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKS 218 (400)
Q Consensus 144 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 218 (400)
.. ....... ...+..+. .+|+ +...++++.||.|++||++.+..... ... .
T Consensus 193 ~~---~~~~~~~~h~~~V~~l~----------~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~--~~~---------~ 248 (753)
T 3jro_A 193 TY---VLESTLEGHSDWVRDVA----------WSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWK--KTL---------L 248 (753)
T ss_dssp EE---EEEEEECCCSSCEEEEE----------ECCCCSSSEEEEEEESSSCEEEEEESSSSSCCB--CCB---------S
T ss_pred cc---eeeeeecCCCCcEEEEE----------eccCCCCCCEEEEEecCCEEEEecCCCCCCcce--eEE---------e
Confidence 10 0111111 01122222 2355 56667777899999999987532100 000 0
Q ss_pred cccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCC
Q psy12356 219 FFSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHMES 256 (400)
Q Consensus 219 ~~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~ 256 (400)
...+|...|.+++|+|+|++|+++ .|++|++||+..+.
T Consensus 249 ~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 249 KEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp SSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 022577889999999999999874 69999999999654
No 120
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.90 E-value=8.1e-22 Score=201.90 Aligned_cols=314 Identities=10% Similarity=0.046 Sum_probs=200.1
Q ss_pred EECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeee-ccCcchhhcccccccceeeEEEEEeccCCceEEEe
Q psy12356 10 QRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLS 88 (400)
Q Consensus 10 ~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~s 88 (400)
+|+|+|.++++++.|++|.+||..++ +++.++. +|. +..++|+|++. .++++
T Consensus 144 ~~~p~~~~~vs~~~d~~V~v~D~~t~-----------~~~~~i~~g~~--------------~~~v~~spdg~--~l~v~ 196 (543)
T 1nir_A 144 DLDLPNLFSVTLRDAGQIALVDGDSK-----------KIVKVIDTGYA--------------VHISRMSASGR--YLLVI 196 (543)
T ss_dssp CCCGGGEEEEEEGGGTEEEEEETTTC-----------CEEEEEECSTT--------------EEEEEECTTSC--EEEEE
T ss_pred ccCCCCEEEEEEcCCCeEEEEECCCc-----------eEEEEEecCcc--------------cceEEECCCCC--EEEEE
Confidence 48999999999999999999998754 3455666 332 66899999874 66678
Q ss_pred eCCCeEEEEEc--cCCCcc---cccccEEEEEEec----CCCCEEEEEe-CCCeEEEEecccccccccccceeccCcccc
Q psy12356 89 TNDQSFNIVDI--KPTNME---ELNEVITAAEFHP----IDCNLFVYSS-SKGTIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 89 s~D~tI~lWd~--~~~~~~---~~~~~V~sv~f~p----~~~~~las~s-~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
+.|++|++||+ .++++. .+.....+++|+| ++ +++++++ .+++|++||..+.+.+.... .. ...
T Consensus 197 ~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg-~~l~v~~~~~~~v~v~D~~t~~~~~~i~----~~-g~~ 270 (543)
T 1nir_A 197 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYED-RYTIAGAYWPPQFAIMDGETLEPKQIVS----TR-GMT 270 (543)
T ss_dssp ETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTT-TEEEEEEEESSEEEEEETTTCCEEEEEE----CC-EEC
T ss_pred CCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCC-CEEEEEEccCCeEEEEeccccccceeec----cc-Ccc
Confidence 88999999999 666531 1234578999999 86 5666666 48999999998875432110 00 000
Q ss_pred eeceec-cCchhhhhhcccC-cceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC
Q psy12356 159 CQGLIV-PESKREERQSSQN-RREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG 236 (400)
Q Consensus 159 ~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg 236 (400)
.....+ ++.....+..+++ ...+++...++.|.+||+.+.+... ... + .+...+..++|+|||
T Consensus 271 ~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~--~~~------------i-~~~~~~~~~~~spdg 335 (543)
T 1nir_A 271 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT--VTS------------I-GAAPFLHDGGWDSSH 335 (543)
T ss_dssp SSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE--EEE------------E-ECCSSCCCEEECTTS
T ss_pred cCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce--eEE------------e-ccCcCccCceECCCC
Confidence 000000 0000011222333 3445566689999999998653211 000 1 233457789999999
Q ss_pred cEEE-Ee-cCCeEEEEeCCCCCCceeeecC----CC------cCCC-Cccc-CC-CCCceeecCccccccee-eccCccc
Q psy12356 237 RYMI-SR-DYLCVKVWDLHMESRPVETYPT----HT------KEEN-GQLR-DP-SNITALRVPQIKPIELT-VEASPRR 300 (400)
Q Consensus 237 ~~la-s~-~D~tIklWD~~~~~~~l~~~~~----h~------~~~~-g~~~-~~-~~~~~i~l~~~~~~~~~-~~~~~~~ 300 (400)
++++ +. .+++|++||+.++ ++++.+.. |. ..++ |++. ++ ..+.+|++|+..+...- ......+
T Consensus 336 ~~l~va~~~~~~v~v~D~~tg-~l~~~i~~g~~ph~g~g~~~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~ 414 (543)
T 1nir_A 336 RYFMTAANNSNKVAVIDSKDR-RLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 414 (543)
T ss_dssp CEEEEEEGGGTEEEEEETTTT-EEEEEEECSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEE
T ss_pred CEEEEEecCCCeEEEEECCCC-eEEEeeccCCCCCCCCCcccCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEE
Confidence 9765 44 4799999999986 46666653 52 1355 4443 33 35688999987651100 0011112
Q ss_pred eeccccccceEEEEEcCCCcEEeecc--------c------------chhh----------cccccceeEEEEccCCCEE
Q psy12356 301 IFANAHTYHINSISVNSDQLTVEASP--------R------------GIFA----------DAHTYHISSTSVNSDQETY 350 (400)
Q Consensus 301 ~~~~~~~~~i~~i~~s~dg~~~~~~~--------~------------~~~~----------~gh~~~V~~i~fspDg~~l 350 (400)
.+ .+|......+.|+|||++|.... . ..+. ..|...|.++.|+|||+.|
T Consensus 415 ~l-~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~ 493 (543)
T 1nir_A 415 EL-QGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEV 493 (543)
T ss_dssp EE-ECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEE
T ss_pred EE-EcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEE
Confidence 22 34556678899999998876532 0 0100 2456789999999999988
Q ss_pred EEe------cCCeEEEEeCccCCeeEEEEe
Q psy12356 351 LSA------DDLRINLWHLEITDQSFNIVD 374 (400)
Q Consensus 351 as~------~D~~i~lW~~~~~~~~~~~~~ 374 (400)
+.+ .|++|.|||.++.+ +.+++.
T Consensus 494 ~~s~~~~~~~~~~i~v~D~~t~~-~~~~i~ 522 (543)
T 1nir_A 494 WFSVWNGKNDSSALVVVDDKTLK-LKAVVK 522 (543)
T ss_dssp EEEEECCTTSCCEEEEEETTTTE-EEEEEC
T ss_pred EEEeecCCCCCCeEEEEECCCce-EEEeec
Confidence 853 27899999998754 555544
No 121
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.90 E-value=2.3e-21 Score=188.33 Aligned_cols=226 Identities=12% Similarity=0.126 Sum_probs=159.4
Q ss_pred eEEEEEECCCCCeE-EEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELL-ATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~L-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+.+++|+|||++| ++++.|++|++||+.++ +.+..+..|. .|.+++|+|+++
T Consensus 33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~-----------~~~~~~~~~~-------------~v~~~~~spdg~-- 86 (391)
T 1l0q_A 33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATN-----------NVIATVPAGS-------------SPQGVAVSPDGK-- 86 (391)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEETTTT-----------EEEEEEECSS-------------SEEEEEECTTSS--
T ss_pred CcceEEECCCCCEEEEECCCCCeEEEEECCCC-----------eEEEEEECCC-------------CccceEECCCCC--
Confidence 47899999999987 68889999999999753 2344555443 388999999874
Q ss_pred eEEEe-eCCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLS-TNDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~s-s~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.++++ +.|++|++||+.+++.. .+...+.+++|+|++..++++++.|+.|++||+++++...... . ....
T Consensus 87 ~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~----~--~~~~ 160 (391)
T 1l0q_A 87 QVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS----V--GRSP 160 (391)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----C--CSSE
T ss_pred EEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe----c--CCCc
Confidence 55554 56899999999987632 2334689999999864455788889999999998874322110 0 0011
Q ss_pred eceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcE
Q psy12356 160 QGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRY 238 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~ 238 (400)
..+ ...+++. ..+++..++.|++||++++... ..+ .+...+.+++|+|+|++
T Consensus 161 ~~~----------~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~----~~~-------------~~~~~~~~~~~~~~g~~ 213 (391)
T 1l0q_A 161 KGI----------AVTPDGTKVYVANFDSMSISVIDTVTNSVI----DTV-------------KVEAAPSGIAVNPEGTK 213 (391)
T ss_dssp EEE----------EECTTSSEEEEEETTTTEEEEEETTTTEEE----EEE-------------ECSSEEEEEEECTTSSE
T ss_pred ceE----------EECCCCCEEEEEeCCCCEEEEEECCCCeEE----EEE-------------ecCCCccceEECCCCCE
Confidence 122 2234543 3355667899999999876432 111 23357889999999998
Q ss_pred EEE-e---cCCeEEEEeCCCCCCceeeecCCC------cCCCCccc--CCCCCceeecCccccc
Q psy12356 239 MIS-R---DYLCVKVWDLHMESRPVETYPTHT------KEENGQLR--DPSNITALRVPQIKPI 290 (400)
Q Consensus 239 las-~---~D~tIklWD~~~~~~~l~~~~~h~------~~~~g~~~--~~~~~~~i~l~~~~~~ 290 (400)
|+. + .++.|++||++++ .++..+..|. +.++|+++ +.+.++.+++|++...
T Consensus 214 l~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~ 276 (391)
T 1l0q_A 214 AYVTNVDKYFNTVSMIDTGTN-KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATN 276 (391)
T ss_dssp EEEEEECSSCCEEEEEETTTT-EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEEecCcCCCcEEEEECCCC-eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence 874 3 4799999999976 4667776663 46788743 4577889999987644
No 122
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.89 E-value=1.8e-22 Score=200.09 Aligned_cols=220 Identities=15% Similarity=0.157 Sum_probs=157.1
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++| +|++||+|+.||+|+|||+.++ +.+.++.+|.. .|.+++|++ .
T Consensus 174 ~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~-----------~~~~~~~~h~~------------~v~~l~~~~----~ 224 (435)
T 1p22_A 174 GSVLCLQY--DERVIITGSSDSTVRVWDVNTG-----------EMLNTLIHHCE------------AVLHLRFNN----G 224 (435)
T ss_dssp SCEEEEEC--CSSEEEEEETTSCEEEEESSSC-----------CEEEEECCCCS------------CEEEEECCT----T
T ss_pred CcEEEEEE--CCCEEEEEcCCCeEEEEECCCC-----------cEEEEEcCCCC------------cEEEEEEcC----C
Confidence 35788888 8999999999999999999864 24567778863 489999964 2
Q ss_pred eEEEeeCCCeEEEEEccCCCc-------ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM-------EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~-------~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
.+++++.|++|++||+.++.. ..|...|.+++|+ ++++++++.|++|++||++++........+.
T Consensus 225 ~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~----- 296 (435)
T 1p22_A 225 MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCEFVRTLNGHK----- 296 (435)
T ss_dssp EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCCEEEEEECCS-----
T ss_pred EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCcEEEEEcCCC-----
Confidence 788899999999999987652 3466789999993 3689999999999999999885432211100
Q ss_pred cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC
Q psy12356 157 CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG 236 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg 236 (400)
..+..+. .++...++++.||.|++||++++... .. +.+|...|.+++| ++
T Consensus 297 ~~v~~~~------------~~~~~l~~g~~dg~i~iwd~~~~~~~----~~------------~~~h~~~v~~~~~--~~ 346 (435)
T 1p22_A 297 RGIACLQ------------YRDRLVVSGSSDNTIRLWDIECGACL----RV------------LEGHEELVRCIRF--DN 346 (435)
T ss_dssp SCEEEEE------------EETTEEEEEETTSCEEEEETTTCCEE----EE------------ECCCSSCEEEEEC--CS
T ss_pred CcEEEEE------------eCCCEEEEEeCCCeEEEEECCCCCEE----EE------------EeCCcCcEEEEEe--cC
Confidence 0011111 12234555668999999999976532 11 3467789999999 78
Q ss_pred cEEEEe-cCCeEEEEeCCCCCC--------ceeeecCCCcC-----CCCcc-cCCCCCceeecCccccc
Q psy12356 237 RYMISR-DYLCVKVWDLHMESR--------PVETYPTHTKE-----ENGQL-RDPSNITALRVPQIKPI 290 (400)
Q Consensus 237 ~~las~-~D~tIklWD~~~~~~--------~l~~~~~h~~~-----~~g~~-~~~~~~~~i~l~~~~~~ 290 (400)
++|+++ .|++|++||++++.. ++..+.+|... .++.+ ++++.+++|++|++...
T Consensus 347 ~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 347 KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEECSSCEEECCSSSEEEEEC----
T ss_pred CEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeCCCEEEEEeCCCEEEEEECCCC
Confidence 888864 699999999976531 57778888521 24554 45788899999987543
No 123
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.89 E-value=3.6e-22 Score=191.68 Aligned_cols=215 Identities=9% Similarity=0.106 Sum_probs=150.1
Q ss_pred eEEEeeCCCeEEEEEccCCCcc-cc-cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceec
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNME-EL-NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQG 161 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~-~~-~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~ 161 (400)
.+++++.|++|+|||+++++.. .. ...|.++.|+|. +++++.|++|++|+....
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~~~~~----~~s~s~D~~i~~w~~~~~-------------------- 105 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPA----IISRGPCNRLLLLYPGNQ-------------------- 105 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEEEECCCTTCCCCS----EEEECSTTEEEEEETTTE--------------------
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEecCCceeeeeCCc----eEEecCCCeEEEEEccCc--------------------
Confidence 6777899999999999888732 11 345777888885 899999999999997543
Q ss_pred eeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC--CCcEE
Q psy12356 162 LIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN--SGRYM 239 (400)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp--dg~~l 239 (400)
+.+||+.++... +.+ ..+|...|.+++|+| +++++
T Consensus 106 ----------------------------~~~~~~~~~~~~----~~~-----------~~~~~~~v~~~~~~~~~~~~~l 142 (343)
T 3lrv_A 106 ----------------------------ITILDSKTNKVL----REI-----------EVDSANEIIYMYGHNEVNTEYF 142 (343)
T ss_dssp ----------------------------EEEEETTTCCEE----EEE-----------ECCCSSCEEEEECCC---CCEE
T ss_pred ----------------------------eEEeecCCccee----EEe-----------ecCCCCCEEEEEcCCCCCCCEE
Confidence 345555543311 000 114567899999999 99999
Q ss_pred EE-ecCCeEEEEeCCCCCCceeeecCC-C-------cCCCCcccC-CCCCceeecCcccccceeeccCccceeccccccc
Q psy12356 240 IS-RDYLCVKVWDLHMESRPVETYPTH-T-------KEENGQLRD-PSNITALRVPQIKPIELTVEASPRRIFANAHTYH 309 (400)
Q Consensus 240 as-~~D~tIklWD~~~~~~~l~~~~~h-~-------~~~~g~~~~-~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (400)
++ +.|++|++||++++. ++..+..| . +.|+|.+++ ++.+++|++|++...+.. ...+..+|...
T Consensus 143 ~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-----~~~~~~~h~~~ 216 (343)
T 3lrv_A 143 IWADNRGTIGFQSYEDDS-QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-----SSRFPVDEEAK 216 (343)
T ss_dssp EEEETTCCEEEEESSSSC-EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-----CEECCCCTTSC
T ss_pred EEEeCCCcEEEEECCCCc-EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-----ccEEeccCCCC
Confidence 96 469999999999864 45555333 1 568898764 688999999998543321 02232349999
Q ss_pred eEEEEEcCCCcEEeecccc---hh-----------h--ccccccee--EEEEccCCCEEEEe-c-CCeEEEEeCccCCee
Q psy12356 310 INSISVNSDQLTVEASPRG---IF-----------A--DAHTYHIS--STSVNSDQETYLSA-D-DLRINLWHLEITDQS 369 (400)
Q Consensus 310 i~~i~~s~dg~~~~~~~~~---~~-----------~--~gh~~~V~--~i~fspDg~~las~-~-D~~i~lW~~~~~~~~ 369 (400)
|.+++|+|||++|++.+.. +| . .+|...+. +++|+|+|++||++ . |+.|+||+++...+.
T Consensus 217 v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~ 296 (343)
T 3lrv_A 217 IKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKN 296 (343)
T ss_dssp EEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCS
T ss_pred EEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccc
Confidence 9999999999998765431 11 0 12445555 59999999999995 5 999999999765544
Q ss_pred EE
Q psy12356 370 FN 371 (400)
Q Consensus 370 ~~ 371 (400)
++
T Consensus 297 ~~ 298 (343)
T 3lrv_A 297 WT 298 (343)
T ss_dssp EE
T ss_pred eE
Confidence 44
No 124
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.89 E-value=9.9e-22 Score=194.87 Aligned_cols=216 Identities=13% Similarity=0.180 Sum_probs=146.8
Q ss_pred eEEEEEECCCCC-eEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGE-LLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~-~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.|.+++|+|++. +|++|+.||+|+||++....... ........+.+|. ..|.+++|+|++ ..
T Consensus 183 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~h~------------~~v~~v~~~p~~-~~ 245 (430)
T 2xyi_A 183 EGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEH----RVIDAKNIFTGHT------------AVVEDVAWHLLH-ES 245 (430)
T ss_dssp CCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGG----GEEECSEEECCCS------------SCEEEEEECSSC-TT
T ss_pred CeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCC----ceeccceeecCCC------------CCEeeeEEeCCC-CC
Confidence 578999999998 99999999999999998642110 0111234566776 359999999954 23
Q ss_pred eEEEeeCCCeEEEEEccCCC-------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc-cccccceeccCc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTN-------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL-CDRHSKCLIEGT 155 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~-------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~-~~~~~~~~~~~~ 155 (400)
.+++++.|+.|++||++++. +..|...|++++|+|++..+|++++.||+|++||++.... +.... ..
T Consensus 246 ~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~----~h- 320 (430)
T 2xyi_A 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFE----SH- 320 (430)
T ss_dssp EEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEE----CC-
T ss_pred EEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEee----cC-
Confidence 66678899999999998762 2356678999999998766899999999999999998421 11100 00
Q ss_pred ccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC
Q psy12356 156 NCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN 234 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp 234 (400)
...+..+.+ +|++ ..+++++.||.|++||++...........-.++ +.+...+.+|...|.+++|+|
T Consensus 321 ~~~v~~i~~----------sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~p 388 (430)
T 2xyi_A 321 KDEIFQVQW----------SPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP--PELLFIHGGHTAKISDFSWNP 388 (430)
T ss_dssp SSCEEEEEE----------CSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC--TTEEEECCCCSSCEEEEEECS
T ss_pred CCCEEEEEE----------CCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCC--cceEEEcCCCCCCceEEEECC
Confidence 111222222 3444 346666789999999998632110000000000 001112347888999999999
Q ss_pred CCc-EEEE-ecCCeEEEEeCCC
Q psy12356 235 SGR-YMIS-RDYLCVKVWDLHM 254 (400)
Q Consensus 235 dg~-~las-~~D~tIklWD~~~ 254 (400)
+++ +|++ +.|++|+||++..
T Consensus 389 ~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 389 NEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp SSTTEEEEEETTSEEEEEEECH
T ss_pred CCCCEEEEEECCCCEEEeEccc
Confidence 999 7776 5689999999985
No 125
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.88 E-value=1.3e-21 Score=189.32 Aligned_cols=214 Identities=11% Similarity=0.098 Sum_probs=134.0
Q ss_pred ceeeEEEEEeccCCceEEEeeCCCeEEEEEccCCCcc--cccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccccc
Q psy12356 69 EKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNME--ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDR 146 (400)
Q Consensus 69 ~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~~~--~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~ 146 (400)
..|.+|+|+|++. +++++.+..++|||++++... .....+..+++.+++..++++++.|++|++||+++++....
T Consensus 20 ~~V~~v~fs~dg~---~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~ 96 (355)
T 3vu4_A 20 NPVTDYEFNQDQS---CLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSR 96 (355)
T ss_dssp CCCCEEEECTTSS---EEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEE
T ss_pred CceEEEEECCCCC---EEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEE
Confidence 4599999999873 555444556899999876531 11224667888887544446677899999999998854321
Q ss_pred ccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccc-cccCcccccccCCCCCCCccccccccc
Q psy12356 147 HSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAA-ALCDRHSKFFEEPEDPTNKSFFSEIIS 225 (400)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~ 225 (400)
.. . ...+..+. ..++....+ .|+.|++||+++. +.. ..+ ..
T Consensus 97 ~~-----~-~~~v~~v~----------~~~~~~~~~---~~~~i~i~d~~~~~~~~----~~~------------~~--- 138 (355)
T 3vu4_A 97 IK-----V-DAPVKDLF----------LSREFIVVS---YGDVISVFKFGNPWKRI----TDD------------IR--- 138 (355)
T ss_dssp EE-----C-SSCEEEEE----------ECSSEEEEE---ETTEEEEEESSTTCCBS----SCC------------EE---
T ss_pred EE-----C-CCceEEEE----------EcCCEEEEE---EcCEEEEEECCCCceee----EEe------------cc---
Confidence 10 0 00111111 223443333 3789999999875 221 111 11
Q ss_pred CeEEEEECCCCcEEE-E-e-cCCeEEEEeCCCCCCc---------------eeeecCCCcCCCCcccCCCCCceeecCcc
Q psy12356 226 SISDVKISNSGRYMI-S-R-DYLCVKVWDLHMESRP---------------VETYPTHTKEENGQLRDPSNITALRVPQI 287 (400)
Q Consensus 226 ~V~~v~fSpdg~~la-s-~-~D~tIklWD~~~~~~~---------------l~~~~~h~~~~~g~~~~~~~~~~i~l~~~ 287 (400)
+...++++| .+++ + + .|++|+|||++++..+ +..+.+
T Consensus 139 ~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~----------------------- 193 (355)
T 3vu4_A 139 FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA----------------------- 193 (355)
T ss_dssp EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECC-----------------------
T ss_pred CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-----------------------
Confidence 344577888 5555 3 3 5899999999975311 233333
Q ss_pred cccceeeccCccceeccccccceEEEEEcCCCcEEeeccc-----ch-----------hhcc-cccceeEEEEccCCCEE
Q psy12356 288 KPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPR-----GI-----------FADA-HTYHISSTSVNSDQETY 350 (400)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~-----~~-----------~~~g-h~~~V~~i~fspDg~~l 350 (400)
|...|++++|+|||+++++++. ++ +..| |...|++++|||||++|
T Consensus 194 ------------------h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l 255 (355)
T 3vu4_A 194 ------------------HTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKL 255 (355)
T ss_dssp ------------------CSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEE
T ss_pred ------------------cCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEE
Confidence 5555566666666665554221 11 1125 99999999999999999
Q ss_pred EEe-cCCeEEEEeCccC
Q psy12356 351 LSA-DDLRINLWHLEIT 366 (400)
Q Consensus 351 as~-~D~~i~lW~~~~~ 366 (400)
|++ .|++|+|||+...
T Consensus 256 ~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 256 AVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EEEETTCEEEEEESSCC
T ss_pred EEEECCCEEEEEEccCC
Confidence 997 7999999999754
No 126
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.87 E-value=2.2e-21 Score=185.02 Aligned_cols=111 Identities=11% Similarity=0.034 Sum_probs=73.0
Q ss_pred EEEEEECC---CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 6 REASQRFS---DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 6 v~~v~fsp---dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
++.++|+| ||.+|||||.|++|||||+.++ +.+++|.+|... ...|.+++|+|++.
T Consensus 181 v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG-----------k~l~tL~g~~~~---------v~~v~~vafSpdG~- 239 (356)
T 2w18_A 181 ETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG-----------QLLKKMHIDDSY---------QASVCHKAYSEMGL- 239 (356)
T ss_dssp SCEEEEEEEETSTTEEEEEETTSEEEEEETTTC-----------CEEEEEECCC------------CCCEEEEEEETTE-
T ss_pred eeeEEeeccCCCCceEEEecCCCcEEEEECCCC-----------cEEEEEcCCCcc---------eeeeEEEEECCCCC-
Confidence 44566666 5677999999999999999864 356788765421 02477889999873
Q ss_pred ceE------------EEeeCCCeEEEEEccCCCcc---------cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 83 AHF------------LLSTNDQSFNIVDIKPTNME---------ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 83 ~~~------------l~ss~D~tI~lWd~~~~~~~---------~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+ ++++.|++|++||.+++.+. +|...+.+..++ +.++|+++.|++|||||++++
T Consensus 240 -~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s---g~~lASgS~DgTIkIWDl~tG 315 (356)
T 2w18_A 240 -LFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK---DHCAAAILTSGTIAIWDLLLG 315 (356)
T ss_dssp -EEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE---TTEEEEEETTSCEEEEETTTC
T ss_pred -EEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC---CCEEEEEcCCCcEEEEECCCC
Confidence 33 33567899999998877631 222223333333 246788888888888888777
No 127
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.86 E-value=5.5e-20 Score=194.00 Aligned_cols=322 Identities=9% Similarity=0.043 Sum_probs=187.0
Q ss_pred eEEEEEECCCCCeEEEecC-CC-----eEEEEEcCCCCccccCCCCcceeeeeeeccCc--chhhcc----------ccc
Q psy12356 5 MREASQRFSDGELLATGDK-GG-----RVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEP--EFDYLK----------SLE 66 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~-Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~--~~~~~~----------~~~ 66 (400)
.|.+++|||||++||+++. |+ +|++||+.+++ ....+..|.. ....+. ...
T Consensus 38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (741)
T 2ecf_A 38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQ-----------TRLLVDSKVVLPGTETLSDEEKARRERQRIA 106 (741)
T ss_dssp CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCC-----------EEEEECGGGTC--------------------
T ss_pred CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCc-----------eeEccchhhcccccccccchhhhhhhhhhhc
Confidence 4889999999999999998 88 99999998643 1122222210 000000 000
Q ss_pred ccceeeEEEEEeccCCceEEEeeCCCeEEEEEccCC---Ccc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEeccc
Q psy12356 67 IEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPT---NME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 67 ~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~---~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~ 140 (400)
....|.+++|+||++ .+++++. ++|++||+.++ ... .+...+.+++|+||| +.||+++ ++.|++||+.+
T Consensus 107 ~~~~v~~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG-~~la~~~-~~~i~~~d~~~ 181 (741)
T 2ecf_A 107 AMTGIVDYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKG-GFVSFIR-GRNLWVIDLAS 181 (741)
T ss_dssp CCEESCCCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTS-SEEEEEE-TTEEEEEETTT
T ss_pred cccCcceeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCC-CEEEEEe-CCcEEEEecCC
Confidence 002377899999974 5555554 99999999988 533 344679999999986 6788876 56899999988
Q ss_pred ccccccccceeccCc-ccceeceeccCchhhhhhcccCcceeecCCCCC-------------------------------
Q psy12356 141 AALCDRHSKCLIEGT-NCNCQGLIVPESKREERQSSQNRREKEDNRRKP------------------------------- 188 (400)
Q Consensus 141 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg------------------------------- 188 (400)
+.............. +...+-..-.......+..+|++..++..+.|+
T Consensus 182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 743211000000000 000000000000001112235543322222222
Q ss_pred --eEEEeeccc-ccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEE-e-----cCCeEEEEeCCCCCCce
Q psy12356 189 --AIRLCDMRA-AALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMIS-R-----DYLCVKVWDLHMESRPV 259 (400)
Q Consensus 189 --~i~lWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las-~-----~D~tIklWD~~~~~~~l 259 (400)
.|.+||+.+ +... ..... ..|...+.+++| |||++|+. + .+..|++||+.++. +.
T Consensus 262 ~~~l~~~d~~~~~~~~----~~~~~----------~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~-~~ 325 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQ----WIDLG----------KEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQ-QR 325 (741)
T ss_dssp EEEEEEECSSTTCCCE----EECCC----------SCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCC-EE
T ss_pred eeEEEEEECCCCCceE----EecCC----------CCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCc-eE
Confidence 778888876 5421 11000 135567999999 99999884 2 15789999999864 33
Q ss_pred eeecCC-----------CcCCCCccc-CCCCCceeecCcccccceeeccCccceeccccccceEEE-EEcCCCcEEeec-
Q psy12356 260 ETYPTH-----------TKEENGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSI-SVNSDQLTVEAS- 325 (400)
Q Consensus 260 ~~~~~h-----------~~~~~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i-~~s~dg~~~~~~- 325 (400)
..+..| .++++|+++ +++.++.++||.+.... . .+.+ ..|...+.++ .|+|||+.++..
T Consensus 326 ~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~-----~-~~~l-~~~~~~v~~~~~~s~dg~~l~~~~ 398 (741)
T 2ecf_A 326 VLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKG-----K-AAAL-THGNWSVDELLAVDEKAGLAYFRA 398 (741)
T ss_dssp EEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSS-----C-EEES-CCSSSCEEEEEEEETTTTEEEEEE
T ss_pred EEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCC-----C-eeee-eecceEEEeEeEEeCCCCEEEEEE
Confidence 333221 256888864 35566777777654221 1 1222 3567778787 599999876532
Q ss_pred c------cchhh---c-------ccccceeEEEEccCCCEEEEe--cC---CeEEEEeCcc
Q psy12356 326 P------RGIFA---D-------AHTYHISSTSVNSDQETYLSA--DD---LRINLWHLEI 365 (400)
Q Consensus 326 ~------~~~~~---~-------gh~~~V~~i~fspDg~~las~--~D---~~i~lW~~~~ 365 (400)
. .++|. . .+...+.+++|||||++|+.. +. ..+.+|+.+.
T Consensus 399 ~~~~~~~~~l~~~~~~g~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~~ 459 (741)
T 2ecf_A 399 GIESARESQIYAVPLQGGQPQRLSKAPGMHSASFARNASVYVDSWSNNSTPPQIELFRANG 459 (741)
T ss_dssp CSSCTTCBEEEEEETTCCCCEECCCSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETTS
T ss_pred eCCCCceEEEEEEEcCCCCeeecccCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcCC
Confidence 1 11221 0 124567899999999998863 33 3588888753
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.85 E-value=2.8e-20 Score=184.01 Aligned_cols=262 Identities=8% Similarity=0.030 Sum_probs=158.8
Q ss_pred eEEEEEECCCCC-eEEEec----CCC----eEEEEEc--CCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeE
Q psy12356 5 MREASQRFSDGE-LLATGD----KGG----RVVIFQR--DPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK 73 (400)
Q Consensus 5 ~v~~v~fspdG~-~Las~s----~Dg----~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~ 73 (400)
.|+..+|++.|. ++|+|+ .|| +|+|||+ .+++ ......+.+|..... .
T Consensus 64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~---------~~~~~~~~~~~~~~~------------~ 122 (415)
T 2hqs_A 64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGT---------VLAQNSYKVNKQWLR------------Y 122 (415)
T ss_dssp GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTC---------EEEEEEEEECGGGHH------------H
T ss_pred CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCC---------EEeeeEEEcChhHHH------------H
Confidence 345667788774 666876 568 9999999 6542 111245777764322 1
Q ss_pred EEEEe--------cc----CCceEEEeeC---C---CeEEEEEccCCCc---ccccccEEEEEEecCCCCEEEEEeCCC-
Q psy12356 74 IRWLR--------RK----NQAHFLLSTN---D---QSFNIVDIKPTNM---EELNEVITAAEFHPIDCNLFVYSSSKG- 131 (400)
Q Consensus 74 v~~sp--------~~----~~~~~l~ss~---D---~tI~lWd~~~~~~---~~~~~~V~sv~f~p~~~~~las~s~Dg- 131 (400)
+++++ .+ .+.+++.++. + ++|++||++++.. ..+...|.+++|+|++ +.||+++.|+
T Consensus 123 ~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg-~~la~~s~~~~ 201 (415)
T 2hqs_A 123 AGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDG-SKLAYVTFESG 201 (415)
T ss_dssp HHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTS-SEEEEEECTTS
T ss_pred HHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCC-CEEEEEEecCC
Confidence 11211 00 0235665443 3 7999999986553 3456789999999985 7899999875
Q ss_pred --eEEEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceee-cCCCC--CeEEEeecccccccCcccc
Q psy12356 132 --TIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKE-DNRRK--PAIRLCDMRAAALCDRHSK 206 (400)
Q Consensus 132 --~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~d--g~i~lWD~~~~~~~~~~~~ 206 (400)
+|++||+++++... +.... .....+ ..+|++..++ +++.+ ..|++||++++...
T Consensus 202 ~~~i~~~d~~tg~~~~-----l~~~~-~~~~~~----------~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~----- 260 (415)
T 2hqs_A 202 RSALVIQTLANGAVRQ-----VASFP-RHNGAP----------AFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----- 260 (415)
T ss_dssp SCEEEEEETTTCCEEE-----EECCS-SCEEEE----------EECTTSSEEEEEECTTSSCEEEEEETTTCCEE-----
T ss_pred CcEEEEEECCCCcEEE-----eecCC-CcccCE----------EEcCCCCEEEEEEecCCCceEEEEECCCCCEE-----
Confidence 99999999874311 11110 011122 2346664322 33344 45999999875421
Q ss_pred cccCCCCCCCcccccccccCeEEEEECCCCcEEEE-ec-CC--eEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCcee
Q psy12356 207 FFEEPEDPTNKSFFSEIISSISDVKISNSGRYMIS-RD-YL--CVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITAL 282 (400)
Q Consensus 207 ~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las-~~-D~--tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i 282 (400)
. +..|...+.+++|||||++|+. +. ++ .|.+||+.++. +..+..|
T Consensus 261 ~------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~--~~~l~~~----------------- 309 (415)
T 2hqs_A 261 Q------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA--PQRITWE----------------- 309 (415)
T ss_dssp E------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC--CEECCCS-----------------
T ss_pred e------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCC--EEEEecC-----------------
Confidence 1 2245678999999999998885 43 44 67777887653 2233212
Q ss_pred ecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeeccc-----ch-----------hhcccccceeEEEEccC
Q psy12356 283 RVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPR-----GI-----------FADAHTYHISSTSVNSD 346 (400)
Q Consensus 283 ~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~-----~~-----------~~~gh~~~V~~i~fspD 346 (400)
...+.+++|+|||++|+.... .+ ...+|. .+.+++||||
T Consensus 310 ------------------------~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spd 364 (415)
T 2hqs_A 310 ------------------------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPN 364 (415)
T ss_dssp ------------------------SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTT
T ss_pred ------------------------CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCC
Confidence 112344555666655543211 00 012343 7889999999
Q ss_pred CCEEEEe-cCC---eEEEEeCcc
Q psy12356 347 QETYLSA-DDL---RINLWHLEI 365 (400)
Q Consensus 347 g~~las~-~D~---~i~lW~~~~ 365 (400)
|++|+++ .|+ .|.+||++.
T Consensus 365 g~~l~~~s~~~~~~~l~~~d~~g 387 (415)
T 2hqs_A 365 GTMVIYSSSQGMGSVLNLVSTDG 387 (415)
T ss_dssp SSEEEEEEEETTEEEEEEEETTS
T ss_pred CCEEEEEEcCCCccEEEEEECCC
Confidence 9999885 444 789999874
No 129
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.84 E-value=2.1e-19 Score=176.86 Aligned_cols=224 Identities=13% Similarity=0.073 Sum_probs=153.9
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|+|+++++++.|++|++||+.++ +.+..+..|.. .+.+++|+|++.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~-----------~~~~~~~~~~~------------~~~~~~~~~~~~-- 224 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQANAVHVFDLKTL-----------AYKATVDLTGK------------WSKILLYDPIRD-- 224 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC-----------CEEEEEECSSS------------SEEEEEEETTTT--
T ss_pred CceeEEEEcCCCEEEEEECCCCEEEEEECCCc-----------eEEEEEcCCCC------------CeeEEEEcCCCC--
Confidence 37899999999999999999999999999753 23456666653 488999999874
Q ss_pred eEEEe-eCCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEe--------CCCeEEEEeccccccccccccee
Q psy12356 84 HFLLS-TNDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSS--------SKGTIRLCDMRAAALCDRHSKCL 151 (400)
Q Consensus 84 ~~l~s-s~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s--------~Dg~i~lWD~~~~~~~~~~~~~~ 151 (400)
.++++ +.|++|++||+++++.. .....+.+++|+|++ +.+++++ .|+.|++||+++++.....
T Consensus 225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g-~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~---- 299 (433)
T 3bws_A 225 LVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDG-KELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI---- 299 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTS-SEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE----
T ss_pred EEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCC-CEEEEEECCCCccccCCCeEEEEECCCCcEEeec----
Confidence 55454 57999999999887631 223458999999986 5777776 5899999999987432210
Q ss_pred ccCcccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEE
Q psy12356 152 IEGTNCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDV 230 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v 230 (400)
.. ......+ ...+++ ...++++.|+.|++||+++++.. ..+ .+...+.++
T Consensus 300 -~~-~~~~~~~----------~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~----~~~-------------~~~~~~~~~ 350 (433)
T 3bws_A 300 -GP-PGNKRHI----------VSGNTENKIYVSDMCCSKIEVYDLKEKKVQ----KSI-------------PVFDKPNTI 350 (433)
T ss_dssp -EE-EECEEEE----------EECSSTTEEEEEETTTTEEEEEETTTTEEE----EEE-------------ECSSSEEEE
T ss_pred -cC-CCCcceE----------EECCCCCEEEEEecCCCEEEEEECCCCcEE----EEe-------------cCCCCCCeE
Confidence 00 0011122 223554 34555678999999999865432 111 234678999
Q ss_pred EECCCCcEEEEe-c---------------CCeEEEEeCCCCCCceeeecCCC------cCCCCccc-C-CCCCceeecCc
Q psy12356 231 KISNSGRYMISR-D---------------YLCVKVWDLHMESRPVETYPTHT------KEENGQLR-D-PSNITALRVPQ 286 (400)
Q Consensus 231 ~fSpdg~~las~-~---------------D~tIklWD~~~~~~~l~~~~~h~------~~~~g~~~-~-~~~~~~i~l~~ 286 (400)
+|+|+|++|+.+ . |+.|++||+.++ .++..+.++. +.++|+++ + .+.++++++|+
T Consensus 351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~ 429 (433)
T 3bws_A 351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD-TVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQIRVYR 429 (433)
T ss_dssp EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT-EEEEEEECSSSEEEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC-cEEEEecCCCCCceEEEcCCCCEEEEEECCCCeEEEEE
Confidence 999999988743 3 469999999876 3566666543 34666643 2 23356666655
Q ss_pred c
Q psy12356 287 I 287 (400)
Q Consensus 287 ~ 287 (400)
+
T Consensus 430 ~ 430 (433)
T 3bws_A 430 R 430 (433)
T ss_dssp E
T ss_pred e
Confidence 4
No 130
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.84 E-value=1.4e-19 Score=198.86 Aligned_cols=309 Identities=12% Similarity=0.061 Sum_probs=190.8
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE-eccCCce
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL-RRKNQAH 84 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s-p~~~~~~ 84 (400)
+.+++|||||++||.++ ++.|++||..... +..+.++.... ......+...+.+++|+ |++. .
T Consensus 247 ~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~------------l~~l~~~~~~~-~~~~~~~~~~v~~~~~S~pdG~--~ 310 (1045)
T 1k32_A 247 YYPRHLNTDGRRILFSK-GGSIYIFNPDTEK------------IEKIEIGDLES-PEDRIISIPSKFAEDFSPLDGD--L 310 (1045)
T ss_dssp SCEEEEEESSSCEEEEE-TTEEEEECTTTCC------------EEECCCCCCCB-CCSEEEECGGGGEEEEEECGGG--C
T ss_pred cceeeEcCCCCEEEEEe-CCEEEEecCCceE------------eeeeccCcccc-cccccccccccceeeecCCCCC--E
Confidence 34679999999999985 8999999984321 11233321000 00001122347889999 9874 4
Q ss_pred EEEeeCCCeEEEEEccCCCc---ccccc-cEEEEEEecCCCCEEEEEeCCCeEE-EEecccccccccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTNM---EELNE-VITAAEFHPIDCNLFVYSSSKGTIR-LCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~---~~~~~-~V~sv~f~p~~~~~las~s~Dg~i~-lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+++++ ++.|.+|++.++.. ..+.. .+.+++|+ ++ +.|++++.++.+. +||+.++.... +.. .....
T Consensus 311 la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg-~~l~~~s~~~~l~~~~d~~~~~~~~-----l~~-~~~~~ 381 (1045)
T 1k32_A 311 IAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TK-VAFIHGTREGDFLGIYDYRTGKAEK-----FEE-NLGNV 381 (1045)
T ss_dssp EEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SE-EEEEEEETTEEEEEEEETTTCCEEE-----CCC-CCCSE
T ss_pred EEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CC-CeEEEEECCCceEEEEECCCCCceE-----ecC-Cccce
Confidence 55555 88999999987763 23344 78999999 75 7888888888888 99988763211 100 00111
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
..+ ..+|++..++.++.++.|++||+.+++.. . .+.+|...+.+++|||||++|
T Consensus 382 ~~~----------~~SpDG~~la~~~~~~~v~~~d~~tg~~~----~------------~~~~~~~~v~~~~~SpDG~~l 435 (1045)
T 1k32_A 382 FAM----------GVDRNGKFAVVANDRFEIMTVDLETGKPT----V------------IERSREAMITDFTISDNSRFI 435 (1045)
T ss_dssp EEE----------EECTTSSEEEEEETTSEEEEEETTTCCEE----E------------EEECSSSCCCCEEECTTSCEE
T ss_pred eee----------EECCCCCEEEEECCCCeEEEEECCCCceE----E------------eccCCCCCccceEECCCCCeE
Confidence 222 23467665555567899999999876431 1 122566778999999999999
Q ss_pred EEe-cC----------CeEEEEeCCCCCCceeeecCCC-------cCCCCccc-CCCCCceeecCcccccce--------
Q psy12356 240 ISR-DY----------LCVKVWDLHMESRPVETYPTHT-------KEENGQLR-DPSNITALRVPQIKPIEL-------- 292 (400)
Q Consensus 240 as~-~D----------~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~-~~~~~~~i~l~~~~~~~~-------- 292 (400)
+.+ .+ ++|++||+.++. +..+..|. +.++|+++ ..+.....+.|+....+.
T Consensus 436 a~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~ 513 (1045)
T 1k32_A 436 AYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKP 513 (1045)
T ss_dssp EEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEE
T ss_pred EEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccccccCcee
Confidence 853 32 499999999753 45555553 57888854 222222222222110000
Q ss_pred --------------e-------------eccCc-cceeccccccceEEEEEcCCCcEEeec---------------ccch
Q psy12356 293 --------------T-------------VEASP-RRIFANAHTYHINSISVNSDQLTVEAS---------------PRGI 329 (400)
Q Consensus 293 --------------~-------------~~~~~-~~~~~~~~~~~i~~i~~s~dg~~~~~~---------------~~~~ 329 (400)
. +.+.. +......|...+..++++|||++++.. ...+
T Consensus 514 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l 593 (1045)
T 1k32_A 514 FVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVL 593 (1045)
T ss_dssp EEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEE
T ss_pred EEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceE
Confidence 0 00100 111123466778999999999866630 1111
Q ss_pred hh----ccc----ccceeEEEEccCCCEEEEecCCeEEEEeCccCC
Q psy12356 330 FA----DAH----TYHISSTSVNSDQETYLSADDLRINLWHLEITD 367 (400)
Q Consensus 330 ~~----~gh----~~~V~~i~fspDg~~las~~D~~i~lW~~~~~~ 367 (400)
+. .+. ...|.+++|||||++|+++.+++|++||+.+.+
T Consensus 594 ~~~d~~~~~~~~l~~~v~~~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 594 LKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp EEEETTTCCEEEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred EEEECCCCcEEEeecCcceEEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 11 111 145789999999999999755589999997654
No 131
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=2.8e-19 Score=178.07 Aligned_cols=165 Identities=11% Similarity=0.088 Sum_probs=114.6
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.++.+++++++.+||+++.|+ |+||+................ +..+ .. .....+...|.+++|+|+++ .
T Consensus 38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~-~~~~---~~----~~~~~~~~~v~~l~~spdg~--~ 106 (434)
T 2oit_A 38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNK-IVDK---VQ----GLLVPMKFPIHHLALSCDNL--T 106 (434)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTC-EEEC---CC----CEEECCSSCEEEEEECTTSC--E
T ss_pred CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCccc-cccc---Cc----cccccCCCcccEEEEcCCCC--E
Confidence 367899999999999999888 999986421100000000000 0000 00 00111234599999999874 6
Q ss_pred EE----EeeCCCeEEEEEccCC--------C-------cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccc
Q psy12356 85 FL----LSTNDQSFNIVDIKPT--------N-------MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCD 145 (400)
Q Consensus 85 ~l----~ss~D~tI~lWd~~~~--------~-------~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~ 145 (400)
++ +++.|++|+|||+.++ + +..|...|++++|+|+++++||+++.||+|++||++++..
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-- 184 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-- 184 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE--
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc--
Confidence 66 4567999999998654 1 1236778999999998668999999999999999987611
Q ss_pred cccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccccccc
Q psy12356 146 RHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIIS 225 (400)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 225 (400)
.. . ..+|..
T Consensus 185 -----~~----------------------------------------------~--------------------~~~~~~ 193 (434)
T 2oit_A 185 -----VC----------------------------------------------A--------------------TLPSTV 193 (434)
T ss_dssp -----EE----------------------------------------------E--------------------EECGGG
T ss_pred -----ee----------------------------------------------e--------------------ccCCCC
Confidence 00 0 013556
Q ss_pred CeEEEEECCCCcEEEEe-cCCeEEEEeCC
Q psy12356 226 SISDVKISNSGRYMISR-DYLCVKVWDLH 253 (400)
Q Consensus 226 ~V~~v~fSpdg~~las~-~D~tIklWD~~ 253 (400)
.|.+++|||+|++|+++ .|++|++||++
T Consensus 194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred ceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 89999999999999975 68999999998
No 132
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.82 E-value=1.4e-19 Score=190.15 Aligned_cols=113 Identities=13% Similarity=0.181 Sum_probs=83.2
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+.+++|||||+++++ +.||+|++||+.+++ ....+.+|... ...|.+++||||++ .
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~-----------~~~~~~~~~~~---------~~~v~~~~~SpDg~--~ 74 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNT-----------STVLIEGKKIE---------SLRAIRYEISPDRE--Y 74 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCC-----------CEEEECTTTTT---------TTTCSEEEECTTSS--E
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCc-----------EEEEecccccc---------ccccceEEECCCCC--E
Confidence 4678999999998887 789999999998643 22344555410 01378899999984 5
Q ss_pred EEEeeCC---------CeEEEEEccCCCccc------ccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccc
Q psy12356 85 FLLSTND---------QSFNIVDIKPTNMEE------LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAA 142 (400)
Q Consensus 85 ~l~ss~D---------~tI~lWd~~~~~~~~------~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~ 142 (400)
+++++.+ +++++||+++++.+. +...+.+++|+||| +.||+++. +.|++||+.++.
T Consensus 75 l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG-~~la~~~~-~~i~~~~~~~g~ 145 (723)
T 1xfd_A 75 ALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKG-QQLIFIFE-NNIYYCAHVGKQ 145 (723)
T ss_dssp EEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSST-TCEEEEET-TEEEEESSSSSC
T ss_pred EEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCC-CEEEEEEC-CeEEEEECCCCc
Confidence 6666553 789999999887422 22237889999986 67888776 799999998874
No 133
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.81 E-value=4.8e-18 Score=162.55 Aligned_cols=205 Identities=11% Similarity=0.113 Sum_probs=124.5
Q ss_pred eEEEEEECCCCCeEEEecC---CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccC
Q psy12356 5 MREASQRFSDGELLATGDK---GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~---Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
.+..++|||||+ |++++. ++.|++|++.++ ..+.+..+..|. ..+..++|+|++.
T Consensus 41 ~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g---------~~~~~~~~~~~~------------~~p~~~a~spdg~ 98 (347)
T 3hfq_A 41 NPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQ---------TAHKLNTVVAPG------------TPPAYVAVDEARQ 98 (347)
T ss_dssp CCCCEEECTTCE-EEEEEEETTEEEEEEEEEETT---------EEEEEEEEEEES------------CCCSEEEEETTTT
T ss_pred CcceEEEccCCe-EEEEEecCCCceEEEEEecCC---------cEEEeeeeecCC------------CCCEEEEECCCCC
Confidence 356799999999 554443 689999999643 223344433343 3477899999874
Q ss_pred CceEEEee-CCCeEEEEEcc-CCCccc---c------------cccEEEEEEecCCCCEEEEEeCCCeEEEEecc-cccc
Q psy12356 82 QAHFLLST-NDQSFNIVDIK-PTNMEE---L------------NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMR-AAAL 143 (400)
Q Consensus 82 ~~~~l~ss-~D~tI~lWd~~-~~~~~~---~------------~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~-~~~~ 143 (400)
.+++++ .+++|++||+. ++.... . ...+.+++|+|++. ++++...++.|++||+. ++.+
T Consensus 99 --~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~ 175 (347)
T 3hfq_A 99 --LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQL 175 (347)
T ss_dssp --EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCE
T ss_pred --EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcE
Confidence 566665 68999999995 333211 1 12377899999875 77877789999999998 4422
Q ss_pred cccccceeccCcccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeeccc--ccccCcccccccCCCCCCCcccc
Q psy12356 144 CDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRA--AALCDRHSKFFEEPEDPTNKSFF 220 (400)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~--~~~~~~~~~~~~~~~~~~~~~~~ 220 (400)
... ............. +.+.|++. +.+++..++.|++||+.. +... ....+.... ..+
T Consensus 176 ~~~--~~~~~~~g~~p~~----------~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~--~~~~~~~~~-----~~~ 236 (347)
T 3hfq_A 176 SEQ--SVLTMEAGFGPRH----------LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT--QLGIVKTIP-----ADY 236 (347)
T ss_dssp EEE--EEEECCTTCCEEE----------EEECTTSSEEEEEETTTTEEEEEEEETTTTEEE--EEEEEESSC-----TTC
T ss_pred EEe--eeEEcCCCCCCce----------EEECCCCCEEEEEeCCCCEEEEEEecCCCCceE--EeeeeeecC-----CCC
Confidence 110 0000000011111 23346654 455556789999999874 2210 001111000 000
Q ss_pred cccccCeEEEEECCCCcEEE-Ee-cCCeEEEEeCCC
Q psy12356 221 SEIISSISDVKISNSGRYMI-SR-DYLCVKVWDLHM 254 (400)
Q Consensus 221 ~~h~~~V~~v~fSpdg~~la-s~-~D~tIklWD~~~ 254 (400)
.....+..++|||||++|+ +. .+++|++||+..
T Consensus 237 -~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 237 -TAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp -CSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred -CCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 0113578899999999874 43 579999999873
No 134
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.81 E-value=4.7e-18 Score=160.96 Aligned_cols=210 Identities=12% Similarity=0.135 Sum_probs=125.5
Q ss_pred eEEEEEECCCCCeEEEecCC-CeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELLATGDKG-GRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~D-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+.+++|+|||++|++++.+ +.|++|+++... +..+.+..+..+. .+..++|+|+++
T Consensus 39 ~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~-------~~~~~~~~~~~~~-------------~~~~~~~s~dg~-- 96 (343)
T 1ri6_A 39 QVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-------GALTFAAESALPG-------------SLTHISTDHQGQ-- 96 (343)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEEECTTT-------CCEEEEEEEECSS-------------CCSEEEECTTSS--
T ss_pred CCceEEECCCCCEEEEeecCCCeEEEEEecCCC-------CceeeccccccCC-------------CCcEEEEcCCCC--
Confidence 46789999999999988876 999999997211 2223333443332 367899999874
Q ss_pred eEEEee-CCCeEEEEEccCCC---c-c--cccccEEEEEEecCCCCEEEEEe-CCCeEEEEeccc-ccccccccceeccC
Q psy12356 84 HFLLST-NDQSFNIVDIKPTN---M-E--ELNEVITAAEFHPIDCNLFVYSS-SKGTIRLCDMRA-AALCDRHSKCLIEG 154 (400)
Q Consensus 84 ~~l~ss-~D~tI~lWd~~~~~---~-~--~~~~~V~sv~f~p~~~~~las~s-~Dg~i~lWD~~~-~~~~~~~~~~~~~~ 154 (400)
.+++++ .++.|++||+..+. . . .....+.+++|+|++ +.+++++ .|+.|++||+.+ +.+...........
T Consensus 97 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~ 175 (343)
T 1ri6_A 97 FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDN-RTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTV 175 (343)
T ss_dssp EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTS-SEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECS
T ss_pred EEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCC-CEEEEecCCCCEEEEEEecCCCceeeecccccccC
Confidence 555554 58999999995332 1 1 112347789999986 4555555 899999999987 43211000000000
Q ss_pred cccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccccCccccccc-CCCCCCCcccccccccCeEEEEE
Q psy12356 155 TNCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFE-EPEDPTNKSFFSEIISSISDVKI 232 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~f 232 (400)
.......+ ...+++. ..+++..++.|++||+......-.....+. .+. . + .....+..++|
T Consensus 176 ~~~~~~~~----------~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~-----~-~-~~~~~~~~i~~ 238 (343)
T 1ri6_A 176 EGAGPRHM----------VFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPE-----N-F-SDTRWAADIHI 238 (343)
T ss_dssp TTCCEEEE----------EECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCT-----T-C-CSCCCEEEEEE
T ss_pred CCCCcceE----------EECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCc-----c-c-cccCCccceEE
Confidence 01111112 2235553 444455789999999964211000001110 000 0 0 11235778999
Q ss_pred CCCCcEEE-Ee-cCCeEEEEeCCC
Q psy12356 233 SNSGRYMI-SR-DYLCVKVWDLHM 254 (400)
Q Consensus 233 Spdg~~la-s~-~D~tIklWD~~~ 254 (400)
+|||++|+ +. .++.|++||+..
T Consensus 239 s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 239 TPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEEECT
T ss_pred CCCCCEEEEEecCCCEEEEEEEcC
Confidence 99999876 44 589999999974
No 135
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.80 E-value=3.3e-18 Score=179.52 Aligned_cols=316 Identities=9% Similarity=0.008 Sum_probs=181.0
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceee-eeeeccCcchhhcccc-----cccceeeEEEEEec
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVY-STFQSHEPEFDYLKSL-----EIEEKINKIRWLRR 79 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~-~~~~~h~~~~~~~~~~-----~~~~~V~~v~~sp~ 79 (400)
+..+.|+ |+.+++++.|+ | +||+.+++. . +.+..|......+... .....|.+++|+|+
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~-----------~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd 92 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKS-----------AQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR 92 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC------------------CEEEEHHHHHTTC-----------CCCEEEEETTT
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcE-----------eeEEeechhHhhhhccchhccccccccCceeEEECCC
Confidence 4557788 67777787788 8 999986531 0 1222332100000000 00124889999998
Q ss_pred cCCceEEEeeCCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEeccc-----cccccccccee
Q psy12356 80 KNQAHFLLSTNDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA-----AALCDRHSKCL 151 (400)
Q Consensus 80 ~~~~~~l~ss~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~-----~~~~~~~~~~~ 151 (400)
. .++.+ .|++|++||+.+++.. .+...+.+++|+|+| +.||++ .|+.|++||+.+ +..........
T Consensus 93 -~--~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG-~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~ 166 (706)
T 2z3z_A 93 -G--LVVLF-TQGGLVGFDMLARKVTYLFDTNEETASLDFSPVG-DRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGT 166 (706)
T ss_dssp -T--EEEEE-ETTEEEEEETTTTEEEEEECCTTCCTTCEECTTS-SEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCB
T ss_pred -C--eEEEE-ECCEEEEEECCCCceEEccCCcccccCCcCCCCC-CEEEEE-ECCeEEEEecCcccccCCCcEEeccCCC
Confidence 3 55555 4699999999887642 234557789999986 677874 789999999988 64321100000
Q ss_pred ccCcccceeceeccC---chhhhhhcccCcceeecC---------------------------------CCCCeEEEeec
Q psy12356 152 IEGTNCNCQGLIVPE---SKREERQSSQNRREKEDN---------------------------------RRKPAIRLCDM 195 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---------------------------------~~dg~i~lWD~ 195 (400)
....++..+.+ +....+..+|++..++.. ..+..|++||+
T Consensus 167 ----~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~ 242 (706)
T 2z3z_A 167 ----ETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHL 242 (706)
T ss_dssp ----TTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEET
T ss_pred ----CCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEEC
Confidence 00000000000 000111223444322221 14578999999
Q ss_pred ccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEE-ecCC-----eEEEEeCCCCCCceeeec--C---
Q psy12356 196 RAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMIS-RDYL-----CVKVWDLHMESRPVETYP--T--- 264 (400)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las-~~D~-----tIklWD~~~~~~~l~~~~--~--- 264 (400)
.++... .... ...|...+.+++|||||++|+. +.++ +|++||+.++.. ++.+. .
T Consensus 243 ~~~~~~----~~~~----------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~-~~~~~~~~~~~ 307 (706)
T 2z3z_A 243 ATGKTV----YLQT----------GEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRF-VRTLFVETDKH 307 (706)
T ss_dssp TTTEEE----ECCC----------CSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCE-EEEEEEEECSS
T ss_pred CCCceE----eecc----------CCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCce-eeEEEEccCCC
Confidence 875431 1110 0134567899999999998885 3443 899999998622 22211 1
Q ss_pred -------CCcCC--CCccc-CCCCCceeecCcccccceeeccCccceeccccccceEE-EEEcCCCcEEeeccc------
Q psy12356 265 -------HTKEE--NGQLR-DPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINS-ISVNSDQLTVEASPR------ 327 (400)
Q Consensus 265 -------h~~~~--~g~~~-~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~-i~~s~dg~~~~~~~~------ 327 (400)
-.+++ +|+++ +++.++.+++|.+... +...+.+ ..|...+.. ++|+|||+.++....
T Consensus 308 ~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-----~~~~~~l-~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~ 381 (706)
T 2z3z_A 308 YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-----GRLIRQV-TKGEWEVTNFAGFDPKGTRLYFESTEASPLE 381 (706)
T ss_dssp CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-----SCEEEEC-CCSSSCEEEEEEECTTSSEEEEEESSSCTTC
T ss_pred eECccCCceeecCCCCEEEEEEccCCccEEEEEECC-----CCEEEec-CCCCeEEEeeeEEcCCCCEEEEEecCCCCce
Confidence 13567 88865 3556677888876422 1111222 346666776 799999987653211
Q ss_pred -chhh----------cccccceeEEEEccCCCEEEEe--cC---CeEEEEeCccCC
Q psy12356 328 -GIFA----------DAHTYHISSTSVNSDQETYLSA--DD---LRINLWHLEITD 367 (400)
Q Consensus 328 -~~~~----------~gh~~~V~~i~fspDg~~las~--~D---~~i~lW~~~~~~ 367 (400)
.++. -.|...+.+++|||||++|+.+ ++ ..|.+||+++.+
T Consensus 382 ~~l~~~d~~~~~~~~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 382 RHFYCIDIKGGKTKDLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKGS 437 (706)
T ss_dssp BEEEEEETTCCCCEESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSCE
T ss_pred EEEEEEEcCCCCceeccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCCe
Confidence 1110 1366779999999999998864 32 569999987643
No 136
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.80 E-value=9.6e-18 Score=165.76 Aligned_cols=183 Identities=11% Similarity=0.115 Sum_probs=120.1
Q ss_pred CCCeEEEecCC------CeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEE
Q psy12356 14 DGELLATGDKG------GRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLL 87 (400)
Q Consensus 14 dG~~Las~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ 87 (400)
.+.+||.++.+ ++|++||+++.. .+.+.+|. ..|.+++|+|+++ .+++
T Consensus 142 ~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------~~~l~~~~------------~~v~~~~~Spdg~--~la~ 195 (415)
T 2hqs_A 142 FRTRIAYVVQTNGGQFPYELRVSDYDGYN------------QFVVHRSP------------QPLMSPAWSPDGS--KLAY 195 (415)
T ss_dssp TTCEEEEEEECSSSSCCEEEEEEETTSCS------------CEEEEEES------------SCEEEEEECTTSS--EEEE
T ss_pred CCCEEEEEEecCCCCccceEEEEcCCCCC------------CEEEeCCC------------CcceeeEEcCCCC--EEEE
Confidence 47788877765 799999997421 34566776 3489999999975 6777
Q ss_pred eeCCC---eEEEEEccCCCc---ccccccEEEEEEecCCCCEEE-EEeCCCe--EEEEecccccccccccceeccCcccc
Q psy12356 88 STNDQ---SFNIVDIKPTNM---EELNEVITAAEFHPIDCNLFV-YSSSKGT--IRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 88 ss~D~---tI~lWd~~~~~~---~~~~~~V~sv~f~p~~~~~la-s~s~Dg~--i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
++.|+ +|++||+++++. ..+...+.+++|+|++ +.|+ +++.|+. |++||++++.... +... ...
T Consensus 196 ~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~~~~~spdg-~~la~~~~~~g~~~i~~~d~~~~~~~~-----l~~~-~~~ 268 (415)
T 2hqs_A 196 VTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG-SKLAFALSKTGSLNLYVMDLASGQIRQ-----VTDG-RSN 268 (415)
T ss_dssp EECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTS-SEEEEEECTTSSCEEEEEETTTCCEEE-----CCCC-SSC
T ss_pred EEecCCCcEEEEEECCCCcEEEeecCCCcccCEEEcCCC-CEEEEEEecCCCceEEEEECCCCCEEe-----CcCC-CCc
Confidence 77664 999999998874 3345678999999986 5555 6666654 9999998874311 1000 011
Q ss_pred eeceeccCchhhhhhcccCcceee-cCCCCC--eEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 159 CQGLIVPESKREERQSSQNRREKE-DNRRKP--AIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~dg--~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
...+ ..+|++...+ ....++ .|.+||+.++.. .. +..|...+.+++||||
T Consensus 269 ~~~~----------~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~-----~~------------l~~~~~~~~~~~~spd 321 (415)
T 2hqs_A 269 NTEP----------TWFPDSQNLAFTSDQAGRPQVYKVNINGGAP-----QR------------ITWEGSQNQDADVSSD 321 (415)
T ss_dssp EEEE----------EECTTSSEEEEEECTTSSCEEEEEETTSSCC-----EE------------CCCSSSEEEEEEECTT
T ss_pred ccce----------EECCCCCEEEEEECCCCCcEEEEEECCCCCE-----EE------------EecCCCcccCeEECCC
Confidence 1122 2335654322 222345 566678776432 11 1134457889999999
Q ss_pred CcEEEEe-c---CCeEEEEeCCCCC
Q psy12356 236 GRYMISR-D---YLCVKVWDLHMES 256 (400)
Q Consensus 236 g~~las~-~---D~tIklWD~~~~~ 256 (400)
|++|+.+ . +..|++||+.++.
T Consensus 322 G~~l~~~~~~~g~~~i~~~d~~~~~ 346 (415)
T 2hqs_A 322 GKFMVMVSSNGGQQHIAKQDLATGG 346 (415)
T ss_dssp SSEEEEEEECSSCEEEEEEETTTCC
T ss_pred CCEEEEEECcCCceEEEEEECCCCC
Confidence 9999853 3 3589999999753
No 137
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.80 E-value=1.3e-17 Score=170.73 Aligned_cols=264 Identities=8% Similarity=0.011 Sum_probs=172.4
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe----cc
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR----RK 80 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp----~~ 80 (400)
.+..++|||||++|++++.|++|++||+... ..+++.++..+ ..+..++|+| ++
T Consensus 180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~---------t~~~~~~i~~g-------------~~p~~va~sp~~~~dg 237 (543)
T 1nir_A 180 AVHISRMSASGRYLLVIGRDARIDMIDLWAK---------EPTKVAEIKIG-------------IEARSVESSKFKGYED 237 (543)
T ss_dssp TEEEEEECTTSCEEEEEETTSEEEEEETTSS---------SCEEEEEEECC-------------SEEEEEEECCSTTCTT
T ss_pred ccceEEECCCCCEEEEECCCCeEEEEECcCC---------CCcEEEEEecC-------------CCcceEEeCCCcCCCC
Confidence 3678999999999999999999999999311 12345555533 2378899999 87
Q ss_pred CCceEEEee-CCCeEEEEEccCCCc-c---c----------c-cccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccc
Q psy12356 81 NQAHFLLST-NDQSFNIVDIKPTNM-E---E----------L-NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALC 144 (400)
Q Consensus 81 ~~~~~l~ss-~D~tI~lWd~~~~~~-~---~----------~-~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~ 144 (400)
. .+++++ .+++|+|||..++++ + . | ...+.++.|+|++..++++...+++|.+||+.+...+
T Consensus 238 ~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l 315 (543)
T 1nir_A 238 R--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL 315 (543)
T ss_dssp T--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC
T ss_pred C--EEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc
Confidence 4 555665 589999999988763 1 1 1 1258899999988778888888999999999876322
Q ss_pred ccccceeccCcccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccccc
Q psy12356 145 DRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEI 223 (400)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 223 (400)
.. ..+.. .....++ .+.|++. ..+++..+++|++||+.++++.. .+.... ..|
T Consensus 316 ~~--~~i~~--~~~~~~~----------~~spdg~~l~va~~~~~~v~v~D~~tg~l~~----~i~~g~--------~ph 369 (543)
T 1nir_A 316 TV--TSIGA--APFLHDG----------GWDSSHRYFMTAANNSNKVAVIDSKDRRLSA----LVDVGK--------TPH 369 (543)
T ss_dssp EE--EEEEC--CSSCCCE----------EECTTSCEEEEEEGGGTEEEEEETTTTEEEE----EEECSS--------SBC
T ss_pred ee--EEecc--CcCccCc----------eECCCCCEEEEEecCCCeEEEEECCCCeEEE----eeccCC--------CCC
Confidence 10 00000 0111122 2235553 44455568999999999876431 111000 124
Q ss_pred ccCeEEEEECCC-CcEEEEe--cCCeEEEEeCCCC------CCceeeecCCC-------cCCCCccc-CCC-------CC
Q psy12356 224 ISSISDVKISNS-GRYMISR--DYLCVKVWDLHME------SRPVETYPTHT-------KEENGQLR-DPS-------NI 279 (400)
Q Consensus 224 ~~~V~~v~fSpd-g~~las~--~D~tIklWD~~~~------~~~l~~~~~h~-------~~~~g~~~-~~~-------~~ 279 (400)
.+....+ ++|+ |++++++ +|++|+|||+.+. .++++++.+|. ++|+|+.+ +.+ .+
T Consensus 370 ~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~ 448 (543)
T 1nir_A 370 PGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARIS 448 (543)
T ss_dssp CTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHH
T ss_pred CCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccC
Confidence 4433333 5787 6666764 5799999999872 35688888773 46898865 222 15
Q ss_pred ceeecCcccccceeeccCcccee-------ccccccceEEEEEcCCCcEEee
Q psy12356 280 TALRVPQIKPIELTVEASPRRIF-------ANAHTYHINSISVNSDQLTVEA 324 (400)
Q Consensus 280 ~~i~l~~~~~~~~~~~~~~~~~~-------~~~~~~~i~~i~~s~dg~~~~~ 324 (400)
.+|++|+....+... +.+ +..+...+.++.|+|||+.+..
T Consensus 449 ~~v~v~d~~~~~~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~ 495 (543)
T 1nir_A 449 QSVAVFDLKNLDAKY-----QVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF 495 (543)
T ss_dssp TCEEEEETTCTTSCC-----EEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred ceEEEEECCCCCCCe-----EEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence 689999876543210 111 1234567899999999987653
No 138
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=3.7e-18 Score=179.63 Aligned_cols=321 Identities=10% Similarity=0.045 Sum_probs=182.2
Q ss_pred EEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEE
Q psy12356 7 EASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFL 86 (400)
Q Consensus 7 ~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l 86 (400)
.+++|+|||++++++ .|++|++||+.+++ ....+.+|... ...|.+++||||++ .++
T Consensus 19 ~~~~~s~dg~~~~~~-~d~~i~~~~~~~g~-----------~~~~~~~~~~~---------~~~~~~~~~SpDg~--~la 75 (719)
T 1z68_A 19 FFPNWISGQEYLHQS-ADNNIVLYNIETGQ-----------SYTILSNRTMK---------SVNASNYGLSPDRQ--FVY 75 (719)
T ss_dssp CCCEESSSSEEEEEC-TTSCEEEEESSSCC-----------EEEEECHHHHH---------TTTCSEEEECTTSS--EEE
T ss_pred CccEECCCCeEEEEc-CCCCEEEEEcCCCc-----------EEEEEcccccc---------ccceeeEEECCCCC--eEE
Confidence 478999999777765 59999999998642 22334444210 01277899999985 566
Q ss_pred EeeC---------CCeEEEEEccCCCc---ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccc-cce---
Q psy12356 87 LSTN---------DQSFNIVDIKPTNM---EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRH-SKC--- 150 (400)
Q Consensus 87 ~ss~---------D~tI~lWd~~~~~~---~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~-~~~--- 150 (400)
+++. |++|++||+++++. ..+...+.+++|+||| +.||+++ |+.|++||+.++...+.. ...
T Consensus 76 ~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~~~~~~~SPDG-~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~ 153 (719)
T 1z68_A 76 LESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRPIQYLCWSPVG-SKLAYVY-QNNIYLKQRPGDPPFQITFNGRENK 153 (719)
T ss_dssp EEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSSBCCEEECSST-TCEEEEE-TTEEEEESSTTSCCEECCCCCBTTT
T ss_pred EEecCceeEEeecceEEEEEECCCCccccceecCcccccceECCCC-CEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCC
Confidence 6654 78999999998886 5555678899999986 6778875 789999999887432100 000
Q ss_pred eccCcccceece--eccCchhhhhhcccCcceeecCCC----------------------------------CCeEEEee
Q psy12356 151 LIEGTNCNCQGL--IVPESKREERQSSQNRREKEDNRR----------------------------------KPAIRLCD 194 (400)
Q Consensus 151 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------dg~i~lWD 194 (400)
+.. +...+-. .+ .+....+..+|++..++.++. ...|++||
T Consensus 154 v~~--g~~~~v~~ee~-~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 154 IFN--GIPDWVYEEEM-LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp EEE--SSCCHHHHHHT-TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred eEc--ccccceeeeec-ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 000 0000000 00 000001233455533222211 22888999
Q ss_pred cccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEEe-c--C--CeEEEEe----CCCCCCceeee---
Q psy12356 195 MRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISR-D--Y--LCVKVWD----LHMESRPVETY--- 262 (400)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~-~--D--~tIklWD----~~~~~~~l~~~--- 262 (400)
+.++.... ..+ +..| ..+.+|...+.+++|||||+++++. + + ..|.+|| +.++. +...+
T Consensus 231 ~~~~~~~~-~~~-~~~~------~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~-~~~~~~~~ 301 (719)
T 1z68_A 231 TTYPAYVG-PQE-VPVP------AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWD-CPKTQEHI 301 (719)
T ss_dssp SSCHHHHC-CEE-CCCC------HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEE-CCGGGEEE
T ss_pred CCCCCccc-eeE-ccCC------ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCc-eEEEEecc
Confidence 98765310 000 0000 0123566789999999999887753 2 2 3588899 76653 22223
Q ss_pred -cCC------------CcCCCCccc---CCCCC--ceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEee
Q psy12356 263 -PTH------------TKEENGQLR---DPSNI--TALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEA 324 (400)
Q Consensus 263 -~~h------------~~~~~g~~~---~~~~~--~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~ 324 (400)
.+| .+++||+.+ ....+ ..+.+|++... . .+.+ ..+...+..+.++ ||+.+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~------~-~~~l-t~~~~~v~~~~~~-d~~~i~~ 372 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE------N-AIQI-TSGKWEAINIFRV-TQDSLFY 372 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST------T-CEEC-SCSSSCEEEEEEE-CSSEEEE
T ss_pred cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC------c-eEec-ccCceEEEEEEEE-eCCEEEE
Confidence 222 245777732 22223 34444443221 1 1122 2345567777777 7765542
Q ss_pred ccc---------chhh-----------------cccccceeEEEEccCCCEEEE-e-cC--CeEEEEeCccCCeeEEEEe
Q psy12356 325 SPR---------GIFA-----------------DAHTYHISSTSVNSDQETYLS-A-DD--LRINLWHLEITDQSFNIVD 374 (400)
Q Consensus 325 ~~~---------~~~~-----------------~gh~~~V~~i~fspDg~~las-~-~D--~~i~lW~~~~~~~~~~~~~ 374 (400)
... ++|. .+|...+..++|||||++|+. + .+ ..+.+|++.+++ +.+++.
T Consensus 373 ~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~-~~~~~~ 451 (719)
T 1z68_A 373 SSNEFEEYPGRRNIYRISIGSYPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQ-EIKILE 451 (719)
T ss_dssp EESCGGGCTTCBEEEEEECSSSSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCC-EEEEEE
T ss_pred EEecCCCCCceEEEEEEeCCCCCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCC-EEEEee
Confidence 211 1110 125567789999999998874 3 32 468999987544 455554
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.79 E-value=3.3e-17 Score=155.21 Aligned_cols=198 Identities=8% Similarity=-0.007 Sum_probs=123.9
Q ss_pred EEEECCCCCeEEEecC-CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeE-EEEEeccCCceE
Q psy12356 8 ASQRFSDGELLATGDK-GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINK-IRWLRRKNQAHF 85 (400)
Q Consensus 8 ~v~fspdG~~Las~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~-v~~sp~~~~~~~ 85 (400)
+++|+|||++|++++. +++|++||..+++ . ....+..+.. ... ++|+|+++ .+
T Consensus 44 ~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~---------~-~~~~~~~~~~-------------~~~~~~~s~dg~--~l 98 (331)
T 3u4y_A 44 DTAITSDCSNVVVTSDFCQTLVQIETQLEP---------P-KVVAIQEGQS-------------SMADVDITPDDQ--FA 98 (331)
T ss_dssp EEEECSSSCEEEEEESTTCEEEEEECSSSS---------C-EEEEEEECSS-------------CCCCEEECTTSS--EE
T ss_pred eEEEcCCCCEEEEEeCCCCeEEEEECCCCc---------e-eEEecccCCC-------------CccceEECCCCC--EE
Confidence 8999999997666655 8999999997542 1 1334444432 334 89999874 45
Q ss_pred EEeeCC-C--eEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCe-EEEEecccccccccccceeccCcccc
Q psy12356 86 LLSTND-Q--SFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGT-IRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 86 l~ss~D-~--tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~-i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
+++..+ + +|++||+++++.. .......+++|+|++..++++...++. |++|++.............. .....
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~ 177 (331)
T 3u4y_A 99 VTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTR 177 (331)
T ss_dssp EECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSS
T ss_pred EEecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCC
Confidence 544333 3 9999999887632 123446899999997556677677788 99999876422110000000 00011
Q ss_pred eeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCc
Q psy12356 159 CQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGR 237 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~ 237 (400)
...+ ...+++. ..++...++.|++||+.++.... ....+ .....+..++|+|||+
T Consensus 178 ~~~~----------~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~-~~~~~-------------~~~~~~~~~~~spdg~ 233 (331)
T 3u4y_A 178 PFNI----------TFTPDGNFAFVANLIGNSIGILETQNPENIT-LLNAV-------------GTNNLPGTIVVSRDGS 233 (331)
T ss_dssp EEEE----------EECTTSSEEEEEETTTTEEEEEECSSTTSCE-EEEEE-------------ECSSCCCCEEECTTSS
T ss_pred ccce----------EECCCCCEEEEEeCCCCeEEEEECCCCcccc-eeeec-------------cCCCCCceEEECCCCC
Confidence 1122 2335553 45555678999999998754300 01111 1124567899999999
Q ss_pred EEE-Ee-cCCeEEEEeCCCC
Q psy12356 238 YMI-SR-DYLCVKVWDLHME 255 (400)
Q Consensus 238 ~la-s~-~D~tIklWD~~~~ 255 (400)
+|+ +. .++.|.+||+.++
T Consensus 234 ~l~v~~~~~~~i~~~d~~~~ 253 (331)
T 3u4y_A 234 TVYVLTESTVDVFNFNQLSG 253 (331)
T ss_dssp EEEEECSSEEEEEEEETTTT
T ss_pred EEEEEEcCCCEEEEEECCCC
Confidence 775 43 4688999999875
No 140
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.79 E-value=1.5e-17 Score=153.34 Aligned_cols=113 Identities=12% Similarity=-0.048 Sum_probs=78.0
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCC-CCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDP-LSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
..|.+++|||||++||+++ ++.|++||+.+ ++ ....+.+|.. ..|.+++|+|++.
T Consensus 42 ~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~-----------~~~~~~~~~~-----------~~~~~~~~spdg~- 97 (297)
T 2ojh_A 42 ELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPS-----------PEKVDTGFAT-----------ICNNDHGISPDGA- 97 (297)
T ss_dssp SCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCS-----------CEECCCTTCC-----------CBCSCCEECTTSS-
T ss_pred cceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCC-----------ceEecccccc-----------ccccceEECCCCC-
Confidence 3578999999999999987 88999999986 42 1223334421 2477899999874
Q ss_pred ceEEEee--CCCeEEEEEc--cCCCccc--ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 83 AHFLLST--NDQSFNIVDI--KPTNMEE--LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 83 ~~~l~ss--~D~tI~lWd~--~~~~~~~--~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+++++ .++.++||.+ .++.... ....+..++|+|++..++++++.|+.++||+++..
T Consensus 98 -~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 98 -LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp -EEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred -EEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECC
Confidence 566666 3456666655 4444322 22348889999986444447778999999997543
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.78 E-value=1.6e-17 Score=182.45 Aligned_cols=250 Identities=13% Similarity=0.138 Sum_probs=158.2
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
+.+.++.|++| .++++++.|++++||.++... +. .+.+..|. .+..++|+|++.
T Consensus 204 ~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g-------~~---~~~l~~~~-------------~~~~~~~SpDG~-- 257 (1045)
T 1k32_A 204 THVSSPVIVGH-RIYFITDIDGFGQIYSTDLDG-------KD---LRKHTSFT-------------DYYPRHLNTDGR-- 257 (1045)
T ss_dssp SCCEEEEEETT-EEEEEECTTSSCEEEEEETTS-------CS---CEECCCCC-------------SSCEEEEEESSS--
T ss_pred CcccceEEeCC-EEEEEEeccCceEEEEEeCCC-------Cc---ceEecCCC-------------CcceeeEcCCCC--
Confidence 35678899998 677788889999999875321 11 22344443 145679999874
Q ss_pred eEEEeeCCCeEEEEEccCCCcccc--------------cccEEEEEEe-cCCCCEEEEEeCCCeEEEEeccccccccccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEEL--------------NEVITAAEFH-PIDCNLFVYSSSKGTIRLCDMRAAALCDRHS 148 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~~--------------~~~V~sv~f~-p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~ 148 (400)
.++.+ .|+.|++||+.++.+..+ ...+.+++|+ |++ +.+|+++ ++.|.+||+.++....
T Consensus 258 ~la~~-~~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG-~~la~~~-~~~i~~~~~~~~~~~~--- 331 (1045)
T 1k32_A 258 RILFS-KGGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDG-DLIAFVS-RGQAFIQDVSGTYVLK--- 331 (1045)
T ss_dssp CEEEE-ETTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGG-GCEEEEE-TTEEEEECTTSSBEEE---
T ss_pred EEEEE-eCCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCC-CEEEEEE-cCEEEEEcCCCCceEE---
Confidence 45444 689999999855443222 2257899999 986 6677776 8899999998763211
Q ss_pred ceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEE-EeecccccccCcccccccCCCCCCCcccccccccCe
Q psy12356 149 KCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIR-LCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSI 227 (400)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~-lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 227 (400)
+..........+ ..+ ++...+..+.++.+. +||+..+... . +.+|...+
T Consensus 332 --~~~~~~~~~~~~----------~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-----~------------l~~~~~~~ 381 (1045)
T 1k32_A 332 --VPEPLRIRYVRR----------GGD-TKVAFIHGTREGDFLGIYDYRTGKAE-----K------------FEENLGNV 381 (1045)
T ss_dssp --CSCCSCEEEEEE----------CSS-SEEEEEEEETTEEEEEEEETTTCCEE-----E------------CCCCCCSE
T ss_pred --ccCCCcceEEee----------eEc-CCCeEEEEECCCceEEEEECCCCCce-----E------------ecCCccce
Confidence 000000011111 122 332222222366777 8887654321 1 12455679
Q ss_pred EEEEECCCCcEEEE-ecCCeEEEEeCCCCCCceeeecCCC-------cCCCCcccC-CC----------CCceeecCccc
Q psy12356 228 SDVKISNSGRYMIS-RDYLCVKVWDLHMESRPVETYPTHT-------KEENGQLRD-PS----------NITALRVPQIK 288 (400)
Q Consensus 228 ~~v~fSpdg~~las-~~D~tIklWD~~~~~~~l~~~~~h~-------~~~~g~~~~-~~----------~~~~i~l~~~~ 288 (400)
..++|||||++|++ +.+++|++||+.++. ....+.+|. ++|||++++ .+ ....+++|++.
T Consensus 382 ~~~~~SpDG~~la~~~~~~~v~~~d~~tg~-~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~ 460 (1045)
T 1k32_A 382 FAMGVDRNGKFAVVANDRFEIMTVDLETGK-PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDME 460 (1045)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTCC-EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETT
T ss_pred eeeEECCCCCEEEEECCCCeEEEEECCCCc-eEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECC
Confidence 99999999999986 467999999999764 344444552 578999652 22 23588888765
Q ss_pred ccceeeccCccceeccccccceEEEEEcCCCcEEee
Q psy12356 289 PIELTVEASPRRIFANAHTYHINSISVNSDQLTVEA 324 (400)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~ 324 (400)
..+. . ....|...+..++|+|||++|+.
T Consensus 461 ~g~~-------~-~l~~~~~~~~~~~~spdG~~l~~ 488 (1045)
T 1k32_A 461 GRKI-------F-AATTENSHDYAPAFDADSKNLYY 488 (1045)
T ss_dssp TTEE-------E-ECSCSSSBEEEEEECTTSCEEEE
T ss_pred CCcE-------E-EeeCCCcccCCceEcCCCCEEEE
Confidence 3221 1 12356677888999999997763
No 142
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.77 E-value=4.8e-18 Score=174.59 Aligned_cols=191 Identities=12% Similarity=0.033 Sum_probs=118.5
Q ss_pred eEEEEEECCCCCeEEEecC-CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELLATGDK-GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.|++|+|||||++||+++. ||+++||+++++ +. +.+..|.. ..|..++|+|| .
T Consensus 23 ~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g-----------~~-~~lt~~~~-----------~~~~~~~~spd-~-- 76 (582)
T 3o4h_A 23 EKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG-----------ET-VKLNREPI-----------NSVLDPHYGVG-R-- 76 (582)
T ss_dssp CEEEEEEEETTTEEEEEEEETTEEEEEEEETT-----------EE-EECCSSCC-----------SEECEECTTCS-E--
T ss_pred chheeecCCCCCeEEEEEccCCceeEEEEcCC-----------Cc-Eeeecccc-----------cccccccCCCC-e--
Confidence 4889999999999999987 999999998542 11 23333321 24788999987 2
Q ss_pred eEEEeeC---CCeEEEEEccC---CCcccc--cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc
Q psy12356 84 HFLLSTN---DQSFNIVDIKP---TNMEEL--NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT 155 (400)
Q Consensus 84 ~~l~ss~---D~tI~lWd~~~---~~~~~~--~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~ 155 (400)
.+++++. +...+||.++. +....+ ...+...+|+|++..++++++.++.+.+||+.+++... +..
T Consensus 77 ~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~-----l~~-- 149 (582)
T 3o4h_A 77 VILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRE-----LAR-- 149 (582)
T ss_dssp EEEEEECSTTSCCEEEEEEETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEE-----EEE--
T ss_pred EEEEeccCCCCcceEEEEEeccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEE-----eec--
Confidence 4444443 56677766643 221111 12244567888765544444444445599998874311 100
Q ss_pred ccceeceeccCchhhhhhcccCcceeecCCCC----CeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEE
Q psy12356 156 NCNCQGLIVPESKREERQSSQNRREKEDNRRK----PAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVK 231 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----g~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~ 231 (400)
...+. ...+|++...+..+.+ +.|++||+.++... . +.+|...+.+++
T Consensus 150 -~~~~~----------~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~-----~------------l~~~~~~~~~~~ 201 (582)
T 3o4h_A 150 -LPGFG----------FVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-----V------------FDSGEGSFSSAS 201 (582)
T ss_dssp -ESSCE----------EEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-----E------------ECCSSCEEEEEE
T ss_pred -CCCce----------EEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-----E------------eecCCCccccce
Confidence 00011 1234666544432233 68999998865421 1 235667789999
Q ss_pred ECCCCcEEEEe-cCC--eEEEEeCCCCC
Q psy12356 232 ISNSGRYMISR-DYL--CVKVWDLHMES 256 (400)
Q Consensus 232 fSpdg~~las~-~D~--tIklWD~~~~~ 256 (400)
|||||++|+++ .++ +|++||+.++.
T Consensus 202 ~SpDG~~l~~~~~~~~~~i~~~d~~~~~ 229 (582)
T 3o4h_A 202 ISPGMKVTAGLETAREARLVTVDPRDGS 229 (582)
T ss_dssp ECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred ECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence 99999999964 466 89999998763
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.75 E-value=3.4e-16 Score=147.63 Aligned_cols=253 Identities=12% Similarity=0.068 Sum_probs=153.3
Q ss_pred CeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccc-eeeEEEEEeccCCceEEE-eeCCCe
Q psy12356 16 ELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEE-KINKIRWLRRKNQAHFLL-STNDQS 93 (400)
Q Consensus 16 ~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~-~V~~v~~sp~~~~~~~l~-ss~D~t 93 (400)
++|++++.+++|++||..++ +.++.+..... . .+..++|+|++. .+++ ++.++.
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~-----------~~~~~~~~~~~-----------~~~~~~~~~s~dg~--~l~v~~~~~~~ 57 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKM-----------AVDKVITIADA-----------GPTPMVPMVAPGGR--IAYATVNKSES 57 (337)
T ss_dssp EEEEEEETTTEEEEEETTTT-----------EEEEEEECTTC-----------TTCCCCEEECTTSS--EEEEEETTTTE
T ss_pred cEEEEcCCCCeEEEEECCCC-----------cEEEEEEcCCC-----------CCCccceEEcCCCC--EEEEEeCCCCe
Confidence 57899999999999998753 23344432110 0 256799999874 4444 456899
Q ss_pred EEEEEccCCCcc-c--ccc------cEEEEEEecCCCCEEEEEe------------CCCeEEEEecccccccccccceec
Q psy12356 94 FNIVDIKPTNME-E--LNE------VITAAEFHPIDCNLFVYSS------------SKGTIRLCDMRAAALCDRHSKCLI 152 (400)
Q Consensus 94 I~lWd~~~~~~~-~--~~~------~V~sv~f~p~~~~~las~s------------~Dg~i~lWD~~~~~~~~~~~~~~~ 152 (400)
|.+||+.+++.. . ... .+.+++|+|++ +.+++++ .++.|.+||+.+++...
T Consensus 58 v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~------- 129 (337)
T 1pby_B 58 LVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDG-KTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK------- 129 (337)
T ss_dssp EEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTS-SEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE-------
T ss_pred EEEEECCCCCeEeeEEcCCcccccccccceEECCCC-CEEEEEecccccccccccccCceEEEEECCCCcEEE-------
Confidence 999999887732 1 111 45678999986 5566654 45677777765542100
Q ss_pred cCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEE
Q psy12356 153 EGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKI 232 (400)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~f 232 (400)
.+ .....+.+++|
T Consensus 130 ------------------------------------------------------~~-------------~~~~~~~~~~~ 142 (337)
T 1pby_B 130 ------------------------------------------------------AF-------------EAPRQITMLAW 142 (337)
T ss_dssp ------------------------------------------------------EE-------------ECCSSCCCEEE
T ss_pred ------------------------------------------------------EE-------------eCCCCcceeEE
Confidence 00 00123556889
Q ss_pred CCCCcEEEEecCCeEEEEeCCCCCCceeeecCC------CcCCCCccc--CCCCCc-----------------------e
Q psy12356 233 SNSGRYMISRDYLCVKVWDLHMESRPVETYPTH------TKEENGQLR--DPSNIT-----------------------A 281 (400)
Q Consensus 233 Spdg~~las~~D~tIklWD~~~~~~~l~~~~~h------~~~~~g~~~--~~~~~~-----------------------~ 281 (400)
+|||++|+.+ ++.|++||+.++. .+..+..+ .+.++|+.+ +..... .
T Consensus 143 s~dg~~l~~~-~~~i~~~d~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 143 ARDGSKLYGL-GRDLHVMDPEAGT-LVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp CTTSSCEEEE-SSSEEEEETTTTE-EEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred CCCCCEEEEe-CCeEEEEECCCCc-EeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccc
Confidence 9999977765 6789999998753 44444432 234566533 111111 2
Q ss_pred eecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccch--h---------hcccccceeEEEEccCCCEE
Q psy12356 282 LRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRGI--F---------ADAHTYHISSTSVNSDQETY 350 (400)
Q Consensus 282 i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~--~---------~~gh~~~V~~i~fspDg~~l 350 (400)
+.+|+....+. ...-...+...+..++|+|||+++......+ + .......+.+++|+|||++|
T Consensus 221 v~~~d~~~~~~------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 221 LLTMDLETGEM------AMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTV 294 (337)
T ss_dssp EEEEETTTCCE------EEEEEEECSSCEEEEEECTTSSEEEEEESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEE
T ss_pred eEEEeCCCCCc------eEeecCCCCCceeeEEECCCCCEEEEeCCeEEEEECCCCcCcceecCCCceeeEEECCCCCEE
Confidence 33343322211 0111123445677899999998765432111 0 01123467899999999988
Q ss_pred EEe-cCCeEEEEeCccCCeeEEEEeec
Q psy12356 351 LSA-DDLRINLWHLEITDQSFNIVDIK 376 (400)
Q Consensus 351 as~-~D~~i~lW~~~~~~~~~~~~~~~ 376 (400)
+++ .|+.|++||+.+.+ ....+...
T Consensus 295 ~~~~~~~~i~v~d~~~~~-~~~~~~~~ 320 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLE-KKGQVDLP 320 (337)
T ss_dssp EEESBSSEEEEEETTTCC-EEEEEECG
T ss_pred EEEcCCCcEEEEECcCCc-EEEEEEcC
Confidence 886 68999999998655 34444443
No 144
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.74 E-value=5.4e-16 Score=147.63 Aligned_cols=206 Identities=10% Similarity=0.017 Sum_probs=131.6
Q ss_pred eeEEEEEECCCCCeEEEecC-------CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEE
Q psy12356 4 YMREASQRFSDGELLATGDK-------GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW 76 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~-------Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~ 76 (400)
..+..++|+|||++|++++. +++|.+||..+++ ....+... ..+..++|
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~-----------~~~~~~~~-------------~~~~~~~~ 96 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLE-----------VTQAIHND-------------LKPFGATI 96 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCC-----------EEEEEEES-------------SCCCSEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCe-----------EEEEEecC-------------CCcceEEE
Confidence 34678999999999988774 5689999987642 23334322 22567899
Q ss_pred EeccCCceEEE-eeCCCeEEEEEccCCCcc-cc---cc---------cEEEEEEecCCCCEEEEE-eCCCeEEEEecccc
Q psy12356 77 LRRKNQAHFLL-STNDQSFNIVDIKPTNME-EL---NE---------VITAAEFHPIDCNLFVYS-SSKGTIRLCDMRAA 141 (400)
Q Consensus 77 sp~~~~~~~l~-ss~D~tI~lWd~~~~~~~-~~---~~---------~V~sv~f~p~~~~~las~-s~Dg~i~lWD~~~~ 141 (400)
+|+++ .+++ ...+++|.+||+++++.. .. .. .+.+++|+|++..+++++ +.++.|.+||+.++
T Consensus 97 s~dg~--~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 97 NNTTQ--TLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp ETTTT--EEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred CCCCC--EEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 99874 4555 456899999999888731 11 11 268899999875455554 35899999999887
Q ss_pred cccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccc
Q psy12356 142 ALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS 221 (400)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (400)
+...... ........ +...+++......+.++.|.+||+.+++... .+.... .
T Consensus 175 ~~~~~~~-----~~~~~~~~----------~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~----~~~~~~--------~ 227 (353)
T 3vgz_A 175 KLKTAIQ-----NTGKMSTG----------LALDSEGKRLYTTNADGELITIDTADNKILS----RKKLLD--------D 227 (353)
T ss_dssp EEEEEEC-----CCCTTCCC----------CEEETTTTEEEEECTTSEEEEEETTTTEEEE----EEECCC--------S
T ss_pred ceEEEec-----CCCCccce----------EEECCCCCEEEEEcCCCeEEEEECCCCeEEE----EEEcCC--------C
Confidence 5422110 00011111 2223555433334468999999998765421 111100 1
Q ss_pred ccccCeEEEEECCCCcEEEE-e-cCCeEEEEeCCCCCCceeeec
Q psy12356 222 EIISSISDVKISNSGRYMIS-R-DYLCVKVWDLHMESRPVETYP 263 (400)
Q Consensus 222 ~h~~~V~~v~fSpdg~~las-~-~D~tIklWD~~~~~~~l~~~~ 263 (400)
++...+..++|+|||++|+. . .++.|.+||..++. .+..+.
T Consensus 228 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~ 270 (353)
T 3vgz_A 228 GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGN-ILAKVA 270 (353)
T ss_dssp SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCC-EEEEEE
T ss_pred CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCc-EEEEEE
Confidence 23356788999999997764 3 46999999998764 455554
No 145
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.74 E-value=2.3e-16 Score=149.81 Aligned_cols=98 Identities=6% Similarity=0.010 Sum_probs=68.6
Q ss_pred EEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEE
Q psy12356 8 ASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLL 87 (400)
Q Consensus 8 ~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ 87 (400)
.++++++++++++++.+++|++||..++ +.++.+..+.. ..+..++|+|++. .+++
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~-----------~~~~~~~~~~~-----------~~~~~~~~s~dg~--~~~v 59 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASD-----------TVYKSCVMPDK-----------FGPGTAMMAPDNR--TAYV 59 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTT-----------EEEEEEECSSC-----------CSSCEEEECTTSS--EEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCC-----------cEEEEEecCCC-----------CCCceeEECCCCC--EEEE
Confidence 4678999999999999999999998753 23444443320 1256789999873 4444
Q ss_pred -eeCCCeEEEEEccCCCcc-c--c-------cccEEEEEEecCCCCEEEEEeCC
Q psy12356 88 -STNDQSFNIVDIKPTNME-E--L-------NEVITAAEFHPIDCNLFVYSSSK 130 (400)
Q Consensus 88 -ss~D~tI~lWd~~~~~~~-~--~-------~~~V~sv~f~p~~~~~las~s~D 130 (400)
+..+++|.+||+++++.. . . ...+.+++|+|++ +++++++.+
T Consensus 60 ~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~ 112 (349)
T 1jmx_B 60 LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDG-KEVYATVNP 112 (349)
T ss_dssp EETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTS-SEEEEEEEE
T ss_pred EeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCC-CEEEEEccc
Confidence 456899999999887632 1 1 1126789999986 567776654
No 146
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.74 E-value=1.9e-17 Score=164.72 Aligned_cols=121 Identities=11% Similarity=0.151 Sum_probs=91.8
Q ss_pred eEEEEEECCCCCeEE----EecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEecc
Q psy12356 5 MREASQRFSDGELLA----TGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRK 80 (400)
Q Consensus 5 ~v~~v~fspdG~~La----s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~ 80 (400)
.|++++|+|||++|| +|+.|++|+|||+.+..............++.+.+|. ..|.+|+|+|+.
T Consensus 94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V~~v~~~p~~ 161 (434)
T 2oit_A 94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAG------------GMVIDMKWNPTV 161 (434)
T ss_dssp CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGG------------GSEEEEEECSSC
T ss_pred cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCC------------CceEEEEECCCC
Confidence 599999999999999 8999999999998642000000000111234556676 459999999973
Q ss_pred CCceEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecc
Q psy12356 81 NQAHFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMR 139 (400)
Q Consensus 81 ~~~~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~ 139 (400)
+..+++++.|++|+|||++++.. ..|...|++++|+|++ ++|++|+.||+|++||++
T Consensus 162 -~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg-~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 162 -PSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKG-KQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp -TTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTS-SCEEEEETTSCEEEECTT
T ss_pred -CCEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCC-CEEEEEcCCCcEEEEccC
Confidence 23677789999999999988752 2356789999999985 789999999999999998
No 147
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.74 E-value=2.3e-15 Score=144.80 Aligned_cols=206 Identities=10% Similarity=0.058 Sum_probs=121.0
Q ss_pred eEEEEEECCCCCeEEEecCC----CeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEecc
Q psy12356 5 MREASQRFSDGELLATGDKG----GRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRK 80 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~D----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~ 80 (400)
.+..++|||||++|++++.+ +.|++|+++... +..+.+..+..+. ..+..+++ ++
T Consensus 51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~-------g~~~~~~~~~~~~------------~~p~~~~~--dg 109 (361)
T 3scy_A 51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK-------GTLHLLNTQKTMG------------ADPCYLTT--NG 109 (361)
T ss_dssp CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT-------TEEEEEEEEECSS------------SCEEEEEE--CS
T ss_pred CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC-------CcEEEeeEeccCC------------CCcEEEEE--CC
Confidence 35678999999999999886 899999987421 2223333333222 12455666 44
Q ss_pred CCceEEEee-CCCeEEEEEccCCC-cccc-----------------cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 81 NQAHFLLST-NDQSFNIVDIKPTN-MEEL-----------------NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 81 ~~~~~l~ss-~D~tI~lWd~~~~~-~~~~-----------------~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
. .+++++ .+++|.+|++.... +... ...+.+++|+|++..++++...++.|++|++...
T Consensus 110 ~--~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~ 187 (361)
T 3scy_A 110 K--NIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPN 187 (361)
T ss_dssp S--EEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred C--EEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCC
Confidence 2 555554 68999999997432 2111 1235789999987445565556899999998765
Q ss_pred cc------cccc-c-ceeccCcccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccccCcccccccCCC
Q psy12356 142 AL------CDRH-S-KCLIEGTNCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPE 212 (400)
Q Consensus 142 ~~------~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~ 212 (400)
.. +... . ............. +.++|++. +......++.|++||+.++.... ...+..
T Consensus 188 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~----------~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~--~~~~~~-- 253 (361)
T 3scy_A 188 ANADNKEKFLTKGTPEAFKVAPGSGPRH----------LIFNSDGKFAYLINEIGGTVIAFRYADGMLDE--IQTVAA-- 253 (361)
T ss_dssp CCTTTCCCCEEEEEEEEEECCTTCCEEE----------EEECTTSSEEEEEETTTCEEEEEEEETTEEEE--EEEEES--
T ss_pred CCcccccceeecccccceecCCCCCCeE----------EEEcCCCCEEEEEcCCCCeEEEEEecCCceEE--eEEEec--
Confidence 21 0000 0 0000000111112 22346654 44444468999999998543210 011100
Q ss_pred CCCCcccccccccCeEEEEECCCCcEEEE-e-c-CCeEEEEeCCC
Q psy12356 213 DPTNKSFFSEIISSISDVKISNSGRYMIS-R-D-YLCVKVWDLHM 254 (400)
Q Consensus 213 ~~~~~~~~~~h~~~V~~v~fSpdg~~las-~-~-D~tIklWD~~~ 254 (400)
...+......++|||||++|+. . . +++|++|++..
T Consensus 254 -------~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~ 291 (361)
T 3scy_A 254 -------DTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDE 291 (361)
T ss_dssp -------CSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECT
T ss_pred -------CCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcC
Confidence 1122345689999999998864 3 4 58999999863
No 148
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.72 E-value=7.4e-17 Score=170.00 Aligned_cols=256 Identities=8% Similarity=0.051 Sum_probs=156.5
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|.+++|||||++||+++. ++|++||+.++... . ...+..|. ..+..++|+||++ .
T Consensus 110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~------~---~~~l~~~~------------~~~~~~~~SPDG~--~ 165 (741)
T 2ecf_A 110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKA------A---VRQLTHGE------------GFATDAKLSPKGG--F 165 (741)
T ss_dssp ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTT------S---CCBCCCSS------------SCEEEEEECTTSS--E
T ss_pred CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcc------e---EEEcccCC------------cccccccCCCCCC--E
Confidence 4789999999999999986 99999999864100 0 12344443 3488999999984 4
Q ss_pred EEEeeCCCeEEEEEccCCCcccc----ccc----------------EEEEEEecCCCCEEEEEeCCC-------------
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEEL----NEV----------------ITAAEFHPIDCNLFVYSSSKG------------- 131 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~~----~~~----------------V~sv~f~p~~~~~las~s~Dg------------- 131 (400)
++.++ +++|++||+.+++.... ... +.+++|+||+ +.|++++.|+
T Consensus 166 la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg-~~l~~~~~d~~~~~~~~~~~~~p 243 (741)
T 2ecf_A 166 VSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDD-SAIAYARIDESPVPVQKRYEVYA 243 (741)
T ss_dssp EEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTS-SCEEEEEEECTTSCEEEEEEECS
T ss_pred EEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCC-CEEEEEEEcCCCCceEecCCCCC
Confidence 55544 67999999988763221 111 4679999986 6778887765
Q ss_pred --------------------eEEEEeccc-ccccccccceeccCcccceeceeccCchhhhhhcccCcceee-----cCC
Q psy12356 132 --------------------TIRLCDMRA-AALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKE-----DNR 185 (400)
Q Consensus 132 --------------------~i~lWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 185 (400)
.|.+||+.+ +........ ......+.. +.. +++..++ .+.
T Consensus 244 ~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~---~~~~~~~~~----------~~~-pDg~~l~~~~~~~~~ 309 (741)
T 2ecf_A 244 DRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLG---KEQDIYLAR----------VNW-RDPQHLSFQRQSRDQ 309 (741)
T ss_dssp SCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCC---SCSSEEEEE----------EEE-EETTEEEEEEEETTS
T ss_pred CcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCC---CCcceEEEE----------EEe-CCCCEEEEEEecccC
Confidence 788999988 642110000 000001111 122 4443222 223
Q ss_pred CCCeEEEeecccccccCcccccccCCCCCCCccccccccc----CeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCcee
Q psy12356 186 RKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIIS----SISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVE 260 (400)
Q Consensus 186 ~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~----~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~ 260 (400)
.+..|++||+.++... ..+. .+.. .+.+++|||||++++++ .|++++||.+...+. +.
T Consensus 310 ~~~~i~~~d~~~g~~~----~~~~------------~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~ 372 (741)
T 2ecf_A 310 KKLDLVEVTLASNQQR----VLAH------------ETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AA 372 (741)
T ss_dssp SEEEEEEEETTTCCEE----EEEE------------EECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EE
T ss_pred CeEEEEEEECCCCceE----EEEE------------cCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-ee
Confidence 5678999999876431 1111 1111 34689999999987765 578888887663333 55
Q ss_pred eecCCC--------cCCCCccc--CCCCCc--eeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEee
Q psy12356 261 TYPTHT--------KEENGQLR--DPSNIT--ALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEA 324 (400)
Q Consensus 261 ~~~~h~--------~~~~g~~~--~~~~~~--~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~ 324 (400)
.+..|. +.++|+.+ +++.++ .+++|.+... +...+.+. ....+.+++|||||++++.
T Consensus 373 ~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~-----g~~~~~l~--~~~~~~~~~~spdg~~l~~ 441 (741)
T 2ecf_A 373 ALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ-----GGQPQRLS--KAPGMHSASFARNASVYVD 441 (741)
T ss_dssp ESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT-----CCCCEECC--CSCSEEEEEECTTSSEEEE
T ss_pred eeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC-----CCCeeecc--cCCCceEEEECCCCCEEEE
Confidence 565553 45788743 233333 7788876422 11112221 2445789999999998874
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.71 E-value=7.2e-16 Score=141.96 Aligned_cols=93 Identities=13% Similarity=0.171 Sum_probs=65.2
Q ss_pred EecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCCCeEEEEEc
Q psy12356 20 TGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDI 99 (400)
Q Consensus 20 s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~ 99 (400)
+++.|++|++||+.+++ . ..+..|. ..|.+++|+|++. .++++ .++.|++||+
T Consensus 17 ~~~~~~~i~~~d~~~~~-----------~-~~~~~~~------------~~v~~~~~spdg~--~l~~~-~~~~i~~~d~ 69 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRK-----------M-RVVWQTP------------ELFEAPNWSPDGK--YLLLN-SEGLLYRLSL 69 (297)
T ss_dssp -CCCCEEEEEEETTTTE-----------E-EEEEEES------------SCCEEEEECTTSS--EEEEE-ETTEEEEEES
T ss_pred CCCcceeEEEEeCCCCc-----------e-eeeccCC------------cceEeeEECCCCC--EEEEE-cCCeEEEEeC
Confidence 45689999999997532 1 2344554 3488999999874 44444 5889999999
Q ss_pred cC-CCcc----cc-cccEEEEEEecCCCCEEEEEe--CCCeEEEEeccc
Q psy12356 100 KP-TNME----EL-NEVITAAEFHPIDCNLFVYSS--SKGTIRLCDMRA 140 (400)
Q Consensus 100 ~~-~~~~----~~-~~~V~sv~f~p~~~~~las~s--~Dg~i~lWD~~~ 140 (400)
++ ++.. .+ ...+.+++|+|++ +.|++++ .++..+||+++.
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~spdg-~~l~~~~~~~~~~~~l~~~~~ 117 (297)
T 2ojh_A 70 AGDPSPEKVDTGFATICNNDHGISPDG-ALYAISDKVEFGKSAIYLLPS 117 (297)
T ss_dssp SSCCSCEECCCTTCCCBCSCCEECTTS-SEEEEEECTTTSSCEEEEEET
T ss_pred CCCCCceEeccccccccccceEECCCC-CEEEEEEeCCCCcceEEEEEC
Confidence 88 7632 22 2567889999985 6788888 446677776643
No 150
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.71 E-value=1.4e-15 Score=143.83 Aligned_cols=190 Identities=11% Similarity=0.076 Sum_probs=112.3
Q ss_pred CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCC-Ce
Q psy12356 15 GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND-QS 93 (400)
Q Consensus 15 G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D-~t 93 (400)
..++++++.|++|++|+++.. +..+.+..+ .|. ..+..++|+|+++ .+++++.+ +.
T Consensus 5 ~~l~~~~~~~~~v~~~~~~~~--------~~~~~~~~~-~~~------------~~~~~~~~spdg~--~l~~~~~~~~~ 61 (343)
T 1ri6_A 5 QTVYIASPESQQIHVWNLNHE--------GALTLTQVV-DVP------------GQVQPMVVSPDKR--YLYVGVRPEFR 61 (343)
T ss_dssp EEEEEEEGGGTEEEEEEECTT--------SCEEEEEEE-ECS------------SCCCCEEECTTSS--EEEEEETTTTE
T ss_pred EEEEEeCCCCCeEEEEEECCC--------CcEEEeeeE-ecC------------CCCceEEECCCCC--EEEEeecCCCe
Confidence 344555588999999999642 122223222 232 3477899999874 56666654 99
Q ss_pred EEEEEcc--CCCccc-----ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc-ccceeceecc
Q psy12356 94 FNIVDIK--PTNMEE-----LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT-NCNCQGLIVP 165 (400)
Q Consensus 94 I~lWd~~--~~~~~~-----~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 165 (400)
|++|+++ ++.... ....+..++|+|++..+++++..++.|++||+..+... ....... ......+
T Consensus 62 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~--- 134 (343)
T 1ri6_A 62 VLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV----GVVDVVEGLDGCHSA--- 134 (343)
T ss_dssp EEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE----EEEEEECCCTTBCCC---
T ss_pred EEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc----cccccccCCCCceEE---
Confidence 9999997 555321 12357889999986434444455899999999422110 0010000 0011112
Q ss_pred CchhhhhhcccCcc-eeecCCCCCeEEEeeccc-ccccCcccc--cccCCCCCCCcccccccccCeEEEEECCCCcEEE-
Q psy12356 166 ESKREERQSSQNRR-EKEDNRRKPAIRLCDMRA-AALCDRHSK--FFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI- 240 (400)
Q Consensus 166 ~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la- 240 (400)
...+++. ...++..++.|++||+.. +.... .. .+.. .....+..++|+|+|++|+
T Consensus 135 -------~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~~~-----------~~~~~~~~~~~~pdg~~l~~ 194 (343)
T 1ri6_A 135 -------NISPDNRTLWVPALKQDRICLFTVSDDGHLVA--QDPAEVTT-----------VEGAGPRHMVFHPNEQYAYC 194 (343)
T ss_dssp -------EECTTSSEEEEEEGGGTEEEEEEECTTSCEEE--EEEEEEEC-----------STTCCEEEEEECTTSSEEEE
T ss_pred -------EECCCCCEEEEecCCCCEEEEEEecCCCceee--eccccccc-----------CCCCCcceEEECCCCCEEEE
Confidence 2235543 333333689999999986 32210 00 0110 1123678899999999775
Q ss_pred Ee-cCCeEEEEeCCC
Q psy12356 241 SR-DYLCVKVWDLHM 254 (400)
Q Consensus 241 s~-~D~tIklWD~~~ 254 (400)
++ .+++|++||+..
T Consensus 195 ~~~~~~~i~~~~~~~ 209 (343)
T 1ri6_A 195 VNELNSSVDVWELKD 209 (343)
T ss_dssp EETTTTEEEEEESSC
T ss_pred EeCCCCEEEEEEecC
Confidence 44 579999999964
No 151
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.71 E-value=2.1e-16 Score=166.00 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=70.5
Q ss_pred eEEEEEECCCCCeEEEecCC---------CeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEE
Q psy12356 5 MREASQRFSDGELLATGDKG---------GRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 75 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 75 (400)
.|.+++|||||++||+++.+ +.|+|||+.+++ .+.+....+|. ..+..++
T Consensus 62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~------------~~~~~~~ 120 (723)
T 1xfd_A 62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGD---------PQSLDPPEVSN------------AKLQYAG 120 (723)
T ss_dssp TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCC---------CEECCCTTCCS------------CCCSBCC
T ss_pred ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCc---------eEeccCCcccc------------ccccccE
Confidence 37899999999999999864 788899998643 11122222332 2367889
Q ss_pred EEeccCCceEEEeeCCCeEEEEEccCCCcccc----cc------------------cEEEEEEecCCCCEEEEEeCC
Q psy12356 76 WLRRKNQAHFLLSTNDQSFNIVDIKPTNMEEL----NE------------------VITAAEFHPIDCNLFVYSSSK 130 (400)
Q Consensus 76 ~sp~~~~~~~l~ss~D~tI~lWd~~~~~~~~~----~~------------------~V~sv~f~p~~~~~las~s~D 130 (400)
||||++ .++.++ +++|++||+.+++.... .. .+.+++|+||+ +.||+++.|
T Consensus 121 ~SPdG~--~la~~~-~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg-~~la~~~~~ 193 (723)
T 1xfd_A 121 WGPKGQ--QLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDG-TRLAYAAIN 193 (723)
T ss_dssp BCSSTT--CEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTS-SEEEEEEEE
T ss_pred ECCCCC--EEEEEE-CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCC-CEEEEEEEC
Confidence 999984 555555 48999999988763211 11 12789999986 678888765
No 152
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.71 E-value=2.7e-16 Score=166.52 Aligned_cols=113 Identities=14% Similarity=0.157 Sum_probs=82.8
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
...+++|+|||++|+++ ||+|++||+.+++ ....+.+|+.. . .......++||||++ .
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~-----------~~~~~~~~~~~-----~--~~~~~~~~~~Spdg~--~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGN-----------SSVFLENSTFD-----E--FGHSINDYSISPDGQ--F 75 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCC-----------EEEEECTTTTT-----T--CCSCCCEEEECTTSS--E
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCc-----------eEEEEechhhh-----h--hcccccceEECCCCC--E
Confidence 45689999999999997 9999999998653 23345666521 0 001134589999984 6
Q ss_pred EEEeeCC---------CeEEEEEccCCCccc---ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 85 FLLSTND---------QSFNIVDIKPTNMEE---LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 85 ~l~ss~D---------~tI~lWd~~~~~~~~---~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
+++++.+ +.+.|||++++++.. +...+..++||||| +.||++ .|+.|.+||+.++
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~SPdG-~~la~~-~~~~i~~~~~~~~ 142 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVG-HKLAYV-WNNDIYVKIEPNL 142 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSST-TCEEEE-ETTEEEEESSTTS
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcceeeEECCCC-CEEEEE-ECCeEEEEECCCC
Confidence 6666665 566799999987533 34578999999986 677887 5789999999887
No 153
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.68 E-value=9.3e-15 Score=138.22 Aligned_cols=191 Identities=8% Similarity=0.087 Sum_probs=115.4
Q ss_pred EEECCCCCe-EEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEE
Q psy12356 9 SQRFSDGEL-LATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLL 87 (400)
Q Consensus 9 v~fspdG~~-Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ 87 (400)
..|++++++ +++++.+++|++||..+++ ....+..+. ..+ .++|+|+++ .+++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~-----------~~~~~~~~~------------~~~-~~~~s~dg~--~l~~ 56 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLE-----------ILNQITLGY------------DFV-DTAITSDCS--NVVV 56 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCC-----------EEEEEECCC------------CEE-EEEECSSSC--EEEE
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccc-----------eeeeEEccC------------Ccc-eEEEcCCCC--EEEE
Confidence 457776665 7788899999999987642 233333332 235 899999874 4555
Q ss_pred ee-CCCeEEEEEccCCCc-cc----ccccEEEEEEecCCCCEEEEEeCC-C--eEEEEecccccccccccceeccCcccc
Q psy12356 88 ST-NDQSFNIVDIKPTNM-EE----LNEVITAAEFHPIDCNLFVYSSSK-G--TIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 88 ss-~D~tI~lWd~~~~~~-~~----~~~~V~sv~f~p~~~~~las~s~D-g--~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
++ .++.|.+||+++++. .. ......+++|+|++ ++++++..+ + .|++||+.++....... . ...
T Consensus 57 ~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----~--~~~ 129 (331)
T 3u4y_A 57 TSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDD-QFAVTVTGLNHPFNMQSYSFLKNKFISTIP----I--PYD 129 (331)
T ss_dssp EESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTS-SEEEECCCSSSSCEEEEEETTTTEEEEEEE----C--CTT
T ss_pred EeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCC-CEEEEecCCCCcccEEEEECCCCCeEEEEE----C--CCC
Confidence 54 589999999988874 21 12233348999986 566644444 3 99999998875422110 0 001
Q ss_pred eeceeccCchhhhhhcccCcc-eeecCCCCCe-EEEeecccccccCcc-cccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 159 CQGLIVPESKREERQSSQNRR-EKEDNRRKPA-IRLCDMRAAALCDRH-SKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~-i~lWD~~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
...+ ...|++. ..+++..++. |++||+......... .+. + ........++|+||
T Consensus 130 ~~~~----------~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~------------~-~~~~~~~~~~~spd 186 (331)
T 3u4y_A 130 AVGI----------AISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEF------------I-SGGTRPFNITFTPD 186 (331)
T ss_dssp EEEE----------EECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEE------------E-CSSSSEEEEEECTT
T ss_pred ccce----------EECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCcc------------c-cCCCCccceEECCC
Confidence 1122 2235553 4444445677 999998753211000 000 0 11245789999999
Q ss_pred CcEEE-Ee-cCCeEEEEeCCCC
Q psy12356 236 GRYMI-SR-DYLCVKVWDLHME 255 (400)
Q Consensus 236 g~~la-s~-~D~tIklWD~~~~ 255 (400)
|++|+ +. .+++|++||+.++
T Consensus 187 g~~l~v~~~~~~~v~v~d~~~~ 208 (331)
T 3u4y_A 187 GNFAFVANLIGNSIGILETQNP 208 (331)
T ss_dssp SSEEEEEETTTTEEEEEECSST
T ss_pred CCEEEEEeCCCCeEEEEECCCC
Confidence 99665 44 5799999999865
No 154
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.66 E-value=2.2e-15 Score=157.96 Aligned_cols=261 Identities=8% Similarity=0.057 Sum_probs=152.5
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|||| ++|+.+. |++|++||+.+++ . ..+..|. ..+.+++|+||++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~-----------~-~~l~~~~------------~~~~~~~~SpdG~-- 133 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARK-----------V-TYLFDTN------------EETASLDFSPVGD-- 133 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTE-----------E-EEEECCT------------TCCTTCEECTTSS--
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCc-----------e-EEccCCc------------ccccCCcCCCCCC--
Confidence 35899999999 5555543 5999999997532 1 2233333 2367789999874
Q ss_pred eEEEeeCCCeEEEEEccC-----CCccc----cccc--------------EEEEEEecCCCCEEEEEe------------
Q psy12356 84 HFLLSTNDQSFNIVDIKP-----TNMEE----LNEV--------------ITAAEFHPIDCNLFVYSS------------ 128 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~-----~~~~~----~~~~--------------V~sv~f~p~~~~~las~s------------ 128 (400)
.+++ +.|++|++||+.+ ++... .... +.+++|+||+ +.|++++
T Consensus 134 ~la~-~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg-~~la~~~~d~~~~~~~~~~ 211 (706)
T 2z3z_A 134 RVAY-VRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKG-SCLAFYRMDQSMVKPTPIV 211 (706)
T ss_dssp EEEE-EETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTS-SEEEEEEEECTTSCCEEEE
T ss_pred EEEE-EECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCC-CEEEEEEECCCCCceEEee
Confidence 4444 5789999999988 76321 1121 4789999985 7788887
Q ss_pred ---------------------CCCeEEEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCC
Q psy12356 129 ---------------------SKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRK 187 (400)
Q Consensus 129 ---------------------~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (400)
.+..|++||+.++........ ......+..+ ..+|++..++..+.+
T Consensus 212 ~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~----------~~spdg~~l~~~~~~ 278 (706)
T 2z3z_A 212 DYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG---EPKEKFLTNL----------SWSPDENILYVAEVN 278 (706)
T ss_dssp ECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC---SCTTCEEEEE----------EECTTSSEEEEEEEC
T ss_pred ccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC---CCCceeEeeE----------EEECCCCEEEEEEeC
Confidence 457899999988743111000 0000111122 223555432222223
Q ss_pred -----CeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC--CCcEEEEe-cCCeEEEEeCCCCCCce
Q psy12356 188 -----PAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN--SGRYMISR-DYLCVKVWDLHMESRPV 259 (400)
Q Consensus 188 -----g~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp--dg~~las~-~D~tIklWD~~~~~~~l 259 (400)
..|++||+.++.... ..+.... ......+.+++||| ||++|+++ .|++++||++...+..+
T Consensus 279 ~~~~~~~v~~~d~~~g~~~~---~~~~~~~--------~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~ 347 (706)
T 2z3z_A 279 RAQNECKVNAYDAETGRFVR---TLFVETD--------KHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI 347 (706)
T ss_dssp TTSCEEEEEEEETTTCCEEE---EEEEEEC--------SSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE
T ss_pred CCCCeeEEEEEECCCCceee---EEEEccC--------CCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE
Confidence 489999998762211 0110000 00112346789999 99988865 57899999887333455
Q ss_pred eeecCCC--------cCCCCccc--CCCCCc--eeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeec
Q psy12356 260 ETYPTHT--------KEENGQLR--DPSNIT--ALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEAS 325 (400)
Q Consensus 260 ~~~~~h~--------~~~~g~~~--~~~~~~--~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~ 325 (400)
+.+..|. +.++|+.+ +++.++ ..++|.+.... +.. +.+ .|...+.+++|||||++++..
T Consensus 348 ~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~----~~~-~~l--~~~~~~~~~~~spdg~~l~~~ 418 (706)
T 2z3z_A 348 RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKG----GKT-KDL--TPESGMHRTQLSPDGSAIIDI 418 (706)
T ss_dssp EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTC----CCC-EES--CCSSSEEEEEECTTSSEEEEE
T ss_pred EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCC----CCc-eec--cCCCceEEEEECCCCCEEEEE
Confidence 6665553 45677643 222222 24444332111 111 111 255668899999999987643
No 155
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.64 E-value=8e-15 Score=141.83 Aligned_cols=204 Identities=11% Similarity=0.009 Sum_probs=117.4
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcC-CCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRD-PLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..++|+|||++|++++.+ +|.+|++. ++ . +..... |... ..+.+++|+|++.
T Consensus 41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g---------~--~~~~~~-~~~~----------g~~~~~~~spdg~-- 95 (365)
T 1jof_A 41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPT---------E--IVHEAS-HPIG----------GHPRANDADTNTR-- 95 (365)
T ss_dssp CCSEEEECTTSSEEEEEEBT-EEEEEEEEETT---------E--EEEEEE-EECC----------SSGGGGCTTSCCE--
T ss_pred CCcEEEECCCCCEEEEEccc-eEEEEEECCCC---------C--EEEeeE-eecC----------CCCccEEECCCCC--
Confidence 46789999999999999888 99999986 32 1 111111 1100 0133467888762
Q ss_pred e-EE-Eee-------------CCCeEEEEEcc-CCCcc----c----ccccEEEEEEecCCCCEEEEEe-CCCeEEEEec
Q psy12356 84 H-FL-LST-------------NDQSFNIVDIK-PTNME----E----LNEVITAAEFHPIDCNLFVYSS-SKGTIRLCDM 138 (400)
Q Consensus 84 ~-~l-~ss-------------~D~tI~lWd~~-~~~~~----~----~~~~V~sv~f~p~~~~~las~s-~Dg~i~lWD~ 138 (400)
. ++ ++. .++++++|+++ ++++. . ....+.+++|+|++ ++++++. .++.|++||+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG-~~l~~~~~~~~~v~~~~~ 174 (365)
T 1jof_A 96 AIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE-TYLYSADLTANKLWTHRK 174 (365)
T ss_dssp EEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS-SEEEEEETTTTEEEEEEE
T ss_pred EEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC-CEEEEEcCCCCEEEEEEE
Confidence 2 33 332 68999999997 45531 1 23468899999986 5555554 4789999999
Q ss_pred c-cccccccccceeccCc-ccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeeccc--ccccCccccccc-CCC
Q psy12356 139 R-AAALCDRHSKCLIEGT-NCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRA--AALCDRHSKFFE-EPE 212 (400)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~--~~~~~~~~~~~~-~~~ 212 (400)
. ++++... ..+.... ......+. +++++. +......++.|++|++.. ++.... .+.+. .+.
T Consensus 175 ~~~g~~~~~--~~~~~~~~g~~p~~~~----------~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~-~~~~~~~~~ 241 (365)
T 1jof_A 175 LASGEVELV--GSVDAPDPGDHPRWVA----------MHPTGNYLYALMEAGNRICEYVIDPATHMPVYT-HHSFPLIPP 241 (365)
T ss_dssp CTTSCEEEE--EEEECSSTTCCEEEEE----------ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-EEEEESSCT
T ss_pred CCCCCEEEe--eeEecCCCCCCCCEeE----------ECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc-cceEEcCCC
Confidence 8 6633110 0010000 11122222 335653 333444578999998753 321000 00010 010
Q ss_pred CCCCccccccccc------CeEEEE-ECCCCcEEEEe--cCC-----eEEEEeCC
Q psy12356 213 DPTNKSFFSEIIS------SISDVK-ISNSGRYMISR--DYL-----CVKVWDLH 253 (400)
Q Consensus 213 ~~~~~~~~~~h~~------~V~~v~-fSpdg~~las~--~D~-----tIklWD~~ 253 (400)
.+.+|.. .+..++ |||||++|+.+ ++. +|++||+.
T Consensus 242 ------~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~ 290 (365)
T 1jof_A 242 ------GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLR 290 (365)
T ss_dssp ------TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEEC
T ss_pred ------CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEEC
Confidence 0112322 578999 99999988743 233 89999986
No 156
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.62 E-value=1.6e-14 Score=139.72 Aligned_cols=189 Identities=8% Similarity=-0.037 Sum_probs=109.3
Q ss_pred EEECCCCCeEEEecC-CCe--EEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 9 SQRFSDGELLATGDK-GGR--VVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 9 v~fspdG~~Las~s~-Dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
.+|||||++||.++. +|. |++||+.+++ ......+|.. .+..++|+||+. .+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~-----------~~~lt~~~~~------------~~~~~~~spdg~--~l 95 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQV-----------ATQLTEGRGD------------NTFGGFLSPDDD--AL 95 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCE-----------EEECCCSSCB------------CSSSCEECTTSS--EE
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCc-----------eEEeeeCCCC------------CccceEEcCCCC--EE
Confidence 789999999999887 674 7778877532 2222333331 133568999875 67
Q ss_pred EEeeCCCeEEEEEccCCCcc----cccccEEEE--EEecCCCCEEEEE----------------------eCCCeEEEEe
Q psy12356 86 LLSTNDQSFNIVDIKPTNME----ELNEVITAA--EFHPIDCNLFVYS----------------------SSKGTIRLCD 137 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~~~----~~~~~V~sv--~f~p~~~~~las~----------------------s~Dg~i~lWD 137 (400)
+.++.++.|++||+.+++.. .+...+... .++|++ .+++.. ..+..|.+||
T Consensus 96 ~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d 174 (388)
T 3pe7_A 96 FYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDC-TKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVD 174 (388)
T ss_dssp EEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTS-SEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEE
T ss_pred EEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCC-CeeccccccCcccccccccchhhhhhccCCcceEEEEE
Confidence 77788899999999988732 122333333 348875 565532 2457899999
Q ss_pred cccccccccccceeccCcccceeceeccCchhhhhhccc-Ccce--eecCC----CCCeEEEeecccccccCcccccccC
Q psy12356 138 MRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQ-NRRE--KEDNR----RKPAIRLCDMRAAALCDRHSKFFEE 210 (400)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~----~dg~i~lWD~~~~~~~~~~~~~~~~ 210 (400)
+.++.... +... ....... ..+| ++.. ..... ....|.++|+..+.. +.+
T Consensus 175 ~~~g~~~~-----l~~~-~~~~~~~----------~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-----~~l-- 231 (388)
T 3pe7_A 175 LKTGESTV-----ILQE-NQWLGHP----------IYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-----RKV-- 231 (388)
T ss_dssp TTTCCEEE-----EEEE-SSCEEEE----------EEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-----EES--
T ss_pred CCCCceEE-----eecC-Ccccccc----------EECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-----EEe--
Confidence 98874311 0000 0011111 2234 4422 22211 133666666654321 111
Q ss_pred CCCCCCcccccccc--cCeEEEEECCCCcEEEE-ec--C---CeEEEEeCCCCC
Q psy12356 211 PEDPTNKSFFSEII--SSISDVKISNSGRYMIS-RD--Y---LCVKVWDLHMES 256 (400)
Q Consensus 211 ~~~~~~~~~~~~h~--~~V~~v~fSpdg~~las-~~--D---~tIklWD~~~~~ 256 (400)
..+. ..+..++|||||+.|+. +. + ..|.+||+.++.
T Consensus 232 ----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~ 275 (388)
T 3pe7_A 232 ----------KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE 275 (388)
T ss_dssp ----------CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC
T ss_pred ----------eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc
Confidence 1111 24778999999997763 32 2 249999999864
No 157
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.60 E-value=1.2e-13 Score=131.77 Aligned_cols=211 Identities=9% Similarity=0.025 Sum_probs=125.2
Q ss_pred eEEEEEECCCCCeEEEec-CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELLATGD-KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..++|+|||++|++++ .+++|++|++... +..+.+..+...... .........+.+++|+|++.
T Consensus 87 ~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~--------g~~~~~~~~~~~~~~---p~~~~~~~~~~~~~~spdg~-- 153 (347)
T 3hfq_A 87 PPAYVAVDEARQLVYSANYHKGTAEVMKIAAD--------GALTLTDTVQHSGHG---PRPEQDGSHIHYTDLTPDNR-- 153 (347)
T ss_dssp CCSEEEEETTTTEEEEEETTTTEEEEEEECTT--------SCEEEEEEEECCCCC---SSTTCSSCCEEEEEECTTSC--
T ss_pred CCEEEEECCCCCEEEEEeCCCCEEEEEEeCCC--------CCeeecceeecCCCC---CCccccCCCceEEEECCCCc--
Confidence 467899999999998887 7899999999642 122223222211100 00000112377899999873
Q ss_pred eEEEeeCCCeEEEEEcc-CCCccc-------ccccEEEEEEecCCCCEEEEEeCCCeEEEEeccc--ccccccccceecc
Q psy12356 84 HFLLSTNDQSFNIVDIK-PTNMEE-------LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA--AALCDRHSKCLIE 153 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~-~~~~~~-------~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~--~~~~~~~~~~~~~ 153 (400)
.+++...++.|++||++ ++.+.. .......++|+|++..+++++..++.|++||++. +.+... ..+..
T Consensus 154 l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~--~~~~~ 231 (347)
T 3hfq_A 154 LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQL--GIVKT 231 (347)
T ss_dssp EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEE--EEEES
T ss_pred EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEe--eeeee
Confidence 44444568999999998 554321 1225678999998744556666789999999885 321100 00101
Q ss_pred Ccc-----cceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCe
Q psy12356 154 GTN-----CNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSI 227 (400)
Q Consensus 154 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 227 (400)
... ..... +..++++. +.++...++.|++||+...... ..+.. +..+...+
T Consensus 232 ~~~~~~~~~~~~~----------i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~-~~~~~------------~~~~~~~~ 288 (347)
T 3hfq_A 232 IPADYTAHNGAAA----------IRLSHDGHFLYVSNRGYNTLAVFAVTADGHL-TLIQQ------------ISTEGDFP 288 (347)
T ss_dssp SCTTCCSCCEEEE----------EEECTTSCEEEEEEETTTEEEEEEECGGGCE-EEEEE------------EECSSSCC
T ss_pred cCCCCCCCCccee----------EEECCCCCEEEEEeCCCCEEEEEEECCCCcE-EEeEE------------EecCCCCc
Confidence 000 01111 23346664 3445556899999998742110 00011 11233457
Q ss_pred EEEEECCCCcEEEEe--cCCeEEEEeCC
Q psy12356 228 SDVKISNSGRYMISR--DYLCVKVWDLH 253 (400)
Q Consensus 228 ~~v~fSpdg~~las~--~D~tIklWD~~ 253 (400)
..++|||||++|+.+ ++++|++|++.
T Consensus 289 ~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 289 RDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp CEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 899999999988754 35899999554
No 158
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.59 E-value=7.8e-14 Score=131.35 Aligned_cols=227 Identities=11% Similarity=0.074 Sum_probs=135.0
Q ss_pred eEEEEEECCCCCeE-EEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELL-ATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~L-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..++|+|||++| ++++.++.|++||+.+++ .+..+...... .+...+..++|+|++.
T Consensus 35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-----------~~~~~~~~~~~-------~~~~~~~~~~~s~dg~-- 94 (337)
T 1pby_B 35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-----------TLGRIDLSTPE-------ERVKSLFGAALSPDGK-- 94 (337)
T ss_dssp CCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-----------EEEEEECCBTT-------EEEECTTCEEECTTSS--
T ss_pred CccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-----------eEeeEEcCCcc-------cccccccceEECCCCC--
Confidence 47789999999865 566678999999987642 22233211000 0012356789999874
Q ss_pred eEEEee------------CCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccccccc
Q psy12356 84 HFLLST------------NDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHS 148 (400)
Q Consensus 84 ~~l~ss------------~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~ 148 (400)
.+++++ .++.|++||+++++.. .....+.+++|+|++ +.++++ ++.|.+||+.+++......
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg-~~l~~~--~~~i~~~d~~~~~~~~~~~ 171 (337)
T 1pby_B 95 TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDG-SKLYGL--GRDLHVMDPEAGTLVEDKP 171 (337)
T ss_dssp EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTS-SCEEEE--SSSEEEEETTTTEEEEEEC
T ss_pred EEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCC-CEEEEe--CCeEEEEECCCCcEeeeee
Confidence 555554 5799999999877632 123356788999986 445555 6899999999885422110
Q ss_pred ceeccCcccceeceeccCchhhhhhcccCcc-eeecCCCCC-----------------------eEEEeecccccccCcc
Q psy12356 149 KCLIEGTNCNCQGLIVPESKREERQSSQNRR-EKEDNRRKP-----------------------AIRLCDMRAAALCDRH 204 (400)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg-----------------------~i~lWD~~~~~~~~~~ 204 (400)
. ... .......+++. ....+..++ .|.+||+.+++..
T Consensus 172 ~----~~~------------~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--- 232 (337)
T 1pby_B 172 I----QSW------------EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--- 232 (337)
T ss_dssp S----TTT------------TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE---
T ss_pred c----ccc------------CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce---
Confidence 0 000 00011122221 111111222 5788998875431
Q ss_pred cccccCCCCCCCcccccccccCeEEEEECCCCcEEEEecCCeEEEEeCCCCCCceeeecCCC------cCCCCccc-CCC
Q psy12356 205 SKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHT------KEENGQLR-DPS 277 (400)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~~D~tIklWD~~~~~~~l~~~~~h~------~~~~g~~~-~~~ 277 (400)
... +..+...+.+++|+|||++|+.+ ++.|++||+.++ ..++.+..+. +.++|+++ .++
T Consensus 233 --~~~----------~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~-~~~~~~~~~~~~~~~~~s~dg~~l~~~~ 298 (337)
T 1pby_B 233 --MRE----------VRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN-ASIKRVPLPHSYYSVNVSTDGSTVWLGG 298 (337)
T ss_dssp --EEE----------EEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT-EEEEEEECSSCCCEEEECTTSCEEEEES
T ss_pred --Eee----------cCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC-cCcceecCCCceeeEEECCCCCEEEEEc
Confidence 000 11334567889999999998877 789999999875 3455554321 34566632 234
Q ss_pred CCceeecCcc
Q psy12356 278 NITALRVPQI 287 (400)
Q Consensus 278 ~~~~i~l~~~ 287 (400)
.++.+++|++
T Consensus 299 ~~~~i~v~d~ 308 (337)
T 1pby_B 299 ALGDLAAYDA 308 (337)
T ss_dssp BSSEEEEEET
T ss_pred CCCcEEEEEC
Confidence 4556666654
No 159
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.59 E-value=3.9e-13 Score=128.16 Aligned_cols=246 Identities=8% Similarity=0.012 Sum_probs=151.2
Q ss_pred eeeEEEEEECCCCCeEEEecCC------------------------CeEEEEEcCCCCccccCCCCcceeeeeeeccCcc
Q psy12356 3 VYMREASQRFSDGELLATGDKG------------------------GRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPE 58 (400)
Q Consensus 3 ~~~v~~v~fspdG~~Las~s~D------------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~ 58 (400)
.+.|.+|+|+|+|+++++.+.+ ++|.+||..+++ +++.+....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~-----------~~~~~~~~~-- 89 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAE-----------ILQSSGKNL-- 89 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCC-----------EEEEECTTT--
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCe-----------EEeccCCCc--
Confidence 4578999999999999998877 478889886532 222232110
Q ss_pred hhhcccccccceeeEEEEEeccCCceEEEeeCCCeEEEEEccCC--Cccc------------ccccEEEEEEecCCCCEE
Q psy12356 59 FDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPT--NMEE------------LNEVITAAEFHPIDCNLF 124 (400)
Q Consensus 59 ~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~--~~~~------------~~~~V~sv~f~p~~~~~l 124 (400)
-..+..|++.|+++ .+++...++.|++||.+.. .+.. .....++++|+|++++++
T Consensus 90 ---------~~~p~gia~d~~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~ly 158 (329)
T 3fvz_A 90 ---------FYLPHGLSIDTDGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVF 158 (329)
T ss_dssp ---------CSSEEEEEECTTSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEE
T ss_pred ---------cCCceEEEECCCCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEE
Confidence 02367899998763 5555567899999998654 2211 112478999999546888
Q ss_pred EEEe-CCCeEEEEecccccccccccceecc-----CcccceeceeccCchhhhhhcccC-cceeecCCCCCeEEEeeccc
Q psy12356 125 VYSS-SKGTIRLCDMRAAALCDRHSKCLIE-----GTNCNCQGLIVPESKREERQSSQN-RREKEDNRRKPAIRLCDMRA 197 (400)
Q Consensus 125 as~s-~Dg~i~lWD~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~dg~i~lWD~~~ 197 (400)
++.+ .++.|++||.. +.........-.. .......++.+ .++ +...+++..++.|++||..+
T Consensus 159 v~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~----------d~~~g~l~v~d~~~~~I~~~~~~~ 227 (329)
T 3fvz_A 159 VSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLAL----------VPHLDQLCVADRENGRIQCFKTDT 227 (329)
T ss_dssp EEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEE----------ETTTTEEEEEETTTTEEEEEETTT
T ss_pred EEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEE----------ECCCCEEEEEECCCCEEEEEECCC
Confidence 8887 69999999944 4322111000000 00001122222 244 55666667789999999885
Q ss_pred ccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEEe--------cCCeEEEEeCCCCCCceeeecCCCcCC
Q psy12356 198 AALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISR--------DYLCVKVWDLHMESRPVETYPTHTKEE 269 (400)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~--------~D~tIklWD~~~~~~~l~~~~~h~~~~ 269 (400)
++.. +.+..+ .+...+..++|+| |..+++. .+.+|++||..++. .+..+..
T Consensus 228 G~~~----~~~~~~----------~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~-~~~~~~~----- 286 (329)
T 3fvz_A 228 KEFV----REIKHA----------SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGE-IIDVFKP----- 286 (329)
T ss_dssp CCEE----EEECCT----------TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCC-EEEEECC-----
T ss_pred CcEE----EEEecc----------ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCe-EEEEEcC-----
Confidence 5432 222111 2345688999999 4433321 23477788776542 3333210
Q ss_pred CCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecccchhhcccccceeEEEEccCCCE
Q psy12356 270 NGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQET 349 (400)
Q Consensus 270 ~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~ 349 (400)
..+|...+..|+|+|||..
T Consensus 287 -------------------------------------------------------------~~~~~~~p~~ia~~~dG~l 305 (329)
T 3fvz_A 287 -------------------------------------------------------------VRKHFDMPHDIVASEDGTV 305 (329)
T ss_dssp -------------------------------------------------------------SSSCCSSEEEEEECTTSEE
T ss_pred -------------------------------------------------------------CCCccCCeeEEEECCCCCE
Confidence 0123445668999999987
Q ss_pred EEEe-cCCeEEEEeCcc
Q psy12356 350 YLSA-DDLRINLWHLEI 365 (400)
Q Consensus 350 las~-~D~~i~lW~~~~ 365 (400)
+++. .+++|++|+++.
T Consensus 306 yvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 306 YIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEESSSCCEEEEEEEE
T ss_pred EEEECCCCEEEEEeCCc
Confidence 8875 688999999864
No 160
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.57 E-value=1.9e-13 Score=129.87 Aligned_cols=165 Identities=8% Similarity=0.035 Sum_probs=102.2
Q ss_pred ceeeEEEEEeccCCceEEEee-C------CCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEec
Q psy12356 69 EKINKIRWLRRKNQAHFLLST-N------DQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDM 138 (400)
Q Consensus 69 ~~V~~v~~sp~~~~~~~l~ss-~------D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~ 138 (400)
..+..++|+|+++ .+++++ . +++|.+||..+++.. .....+.+++|+|++..++++...++.|.+||+
T Consensus 41 ~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 41 KGAYEMAYSQQEN--ALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp SSEEEEEEETTTT--EEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cCccceEECCCCC--EEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 3477899999874 555543 2 679999999888732 123346788999987556677777899999999
Q ss_pred ccccccccccceeccC----cccceeceeccCchhhhhhcccCcc-e-eecCCCCCeEEEeecccccccCcccccccCCC
Q psy12356 139 RAAALCDRHSKCLIEG----TNCNCQGLIVPESKREERQSSQNRR-E-KEDNRRKPAIRLCDMRAAALCDRHSKFFEEPE 212 (400)
Q Consensus 139 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~ 212 (400)
.+++............ .......+. ..+++. . ++....++.|.+||+.+++.. ..+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~----~~~---- 180 (353)
T 3vgz_A 119 KTGEVKGRLVLDDRKRTEEVRPLQPRELV----------ADDATNTVYISGIGKESVIWVVDGGNIKLK----TAI---- 180 (353)
T ss_dssp TTCCEEEEEESCCCCCCSSCCCCEEEEEE----------EETTTTEEEEEEESSSCEEEEEETTTTEEE----EEE----
T ss_pred CCCeeEEEEecCCCccccccCCCCCceEE----------ECCCCCEEEEEecCCCceEEEEcCCCCceE----EEe----
Confidence 9885432111000000 000011222 234432 2 222245889999999876532 111
Q ss_pred CCCCcccccccccCeEEEEECCCCcEEEE-ecCCeEEEEeCCCCCCceeee
Q psy12356 213 DPTNKSFFSEIISSISDVKISNSGRYMIS-RDYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 213 ~~~~~~~~~~h~~~V~~v~fSpdg~~las-~~D~tIklWD~~~~~~~l~~~ 262 (400)
..+...+..++|+|||++|+. ..++.|.+||+.++. .+..+
T Consensus 181 --------~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~-~~~~~ 222 (353)
T 3vgz_A 181 --------QNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNK-ILSRK 222 (353)
T ss_dssp --------CCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTE-EEEEE
T ss_pred --------cCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCe-EEEEE
Confidence 112234678999999998875 468999999999763 44444
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.56 E-value=1.3e-14 Score=152.45 Aligned_cols=106 Identities=11% Similarity=0.132 Sum_probs=76.7
Q ss_pred EEEEEeccCCceEEEeeCCCeEEEEEccCCCcccc----cc---cEEEEEEecCCCCEEEEEeC---------CCeEEEE
Q psy12356 73 KIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNMEEL----NE---VITAAEFHPIDCNLFVYSSS---------KGTIRLC 136 (400)
Q Consensus 73 ~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~~~~~----~~---~V~sv~f~p~~~~~las~s~---------Dg~i~lW 136 (400)
+++|+|++ +++.++.|++|++||+++++.... .. .+.+++||||| ++||+++. |++|++|
T Consensus 20 ~~~~s~dg---~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg-~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 20 FPNWISGQ---EYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDR-QFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCEESSSS---EEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTS-SEEEEEEEEEECSSSCEEEEEEEE
T ss_pred ccEECCCC---eEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCC-CeEEEEecCceeEEeecceEEEEE
Confidence 57899987 677777799999999998874321 11 28899999986 77888765 5666666
Q ss_pred ecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCC
Q psy12356 137 DMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTN 216 (400)
Q Consensus 137 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 216 (400)
|+.++ +.... .
T Consensus 96 d~~~g---------------------------------------------------------~~~~~--~---------- 106 (719)
T 1z68_A 96 DLSNG---------------------------------------------------------EFVRG--N---------- 106 (719)
T ss_dssp ETTTT---------------------------------------------------------EECCS--S----------
T ss_pred ECCCC---------------------------------------------------------ccccc--e----------
Confidence 66555 11000 0
Q ss_pred cccccccccCeEEEEECCCCcEEEEecCCeEEEEeCCCCC
Q psy12356 217 KSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLHMES 256 (400)
Q Consensus 217 ~~~~~~h~~~V~~v~fSpdg~~las~~D~tIklWD~~~~~ 256 (400)
.....+..++|||||+.||.+.+++|++||+.++.
T Consensus 107 -----~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~ 141 (719)
T 1z68_A 107 -----ELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDP 141 (719)
T ss_dssp -----CCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSC
T ss_pred -----ecCcccccceECCCCCEEEEEECCeEEEEeCCCCC
Confidence 00134678999999999998788999999998764
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.54 E-value=6.4e-13 Score=140.57 Aligned_cols=192 Identities=10% Similarity=0.072 Sum_probs=115.8
Q ss_pred EEEEECCCCCeEEEecCC---------CeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 7 EASQRFSDGELLATGDKG---------GRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 7 ~~v~fspdG~~Las~s~D---------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
..++|||||++||.++.+ +.+.|||+.+++ ...+..|. ..+..++||
T Consensus 65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~------------~~~l~~~~------------~~~~~~~~S 120 (740)
T 4a5s_A 65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ------------LITEERIP------------NNTQWVTWS 120 (740)
T ss_dssp CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTE------------ECCSSCCC------------TTEEEEEEC
T ss_pred cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCc------------EEEcccCC------------CcceeeEEC
Confidence 348899999999999876 556799998642 12344443 237889999
Q ss_pred eccCCceEEEeeCCCeEEEEEccCCCcccc-----cccE-----------------EEEEEecCCCCEEEEEeCCCe-EE
Q psy12356 78 RRKNQAHFLLSTNDQSFNIVDIKPTNMEEL-----NEVI-----------------TAAEFHPIDCNLFVYSSSKGT-IR 134 (400)
Q Consensus 78 p~~~~~~~l~ss~D~tI~lWd~~~~~~~~~-----~~~V-----------------~sv~f~p~~~~~las~s~Dg~-i~ 134 (400)
||++ .++.+ .|+.|++||+.++....+ ...+ .++.||||| +.||+++.|.+ ++
T Consensus 121 PdG~--~la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg-~~la~~~~d~~~v~ 196 (740)
T 4a5s_A 121 PVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG-TFLAYAQFNDTEVP 196 (740)
T ss_dssp SSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS-SEEEEEEEECTTCC
T ss_pred CCCC--EEEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC-CEEEEEEEcccCCc
Confidence 9984 45544 578999999988763221 1112 348899986 68888887654 99
Q ss_pred EEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeeccc---ccccCcccccccCC
Q psy12356 135 LCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRA---AALCDRHSKFFEEP 211 (400)
Q Consensus 135 lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~---~~~~~~~~~~~~~~ 211 (400)
+|++....... ... .....+..+ .. +......+|++||+.+ +... . ...+..+
T Consensus 197 ~~~~~~~~~~~-------~~~-~~~~~~~yp----------~~----G~~~~~~~l~v~d~~~~~~~~~~-~-~~~l~~~ 252 (740)
T 4a5s_A 197 LIEYSFYSDES-------LQY-PKTVRVPYP----------KA----GAVNPTVKFFVVNTDSLSSVTNA-T-SIQITAP 252 (740)
T ss_dssp EEEEEECCSTT-------CSS-CEEEEEECC----------BT----TSCCCEEEEEEEETTSCCSSSCC-C-EEEECCC
T ss_pred eEEEEeecCCC-------CCC-CcceeecCC----------CC----cCcCCeeEEEEEECCCCCCCCcc-e-EEEecCC
Confidence 99875431100 000 000001111 00 1111234788899987 5210 0 0111100
Q ss_pred CCCCCcccccccccCeEEEEECCCCcEEEE-ec----CCeEEEEeCCCCC
Q psy12356 212 EDPTNKSFFSEIISSISDVKISNSGRYMIS-RD----YLCVKVWDLHMES 256 (400)
Q Consensus 212 ~~~~~~~~~~~h~~~V~~v~fSpdg~~las-~~----D~tIklWD~~~~~ 256 (400)
. .+.+|...+..++|||||++++. .. +..|++||+.++.
T Consensus 253 ~------~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 253 A------SMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp H------HHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred c------cCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 0 01135677999999999997763 22 3589999998864
No 163
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.53 E-value=2.2e-12 Score=123.86 Aligned_cols=206 Identities=9% Similarity=-0.023 Sum_probs=110.6
Q ss_pred CCCCCeEEEe----cCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEE
Q psy12356 12 FSDGELLATG----DKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLL 87 (400)
Q Consensus 12 spdG~~Las~----s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ 87 (400)
.+...++..| +.++.|++|.++... +..+.+..+ +. ..+..++|+|++. .+++
T Consensus 10 ~~~~~~~~vg~y~~~~~~~i~~~~~d~~~-------g~~~~~~~~--~~------------~~p~~l~~spdg~--~l~~ 66 (361)
T 3scy_A 10 TDSELTMLVGTYTSGNSKGIYTFRFNEET-------GESLPLSDA--EV------------ANPSYLIPSADGK--FVYS 66 (361)
T ss_dssp GGGEEEEEEEECCSSSCCEEEEEEEETTT-------CCEEEEEEE--EC------------SCCCSEEECTTSS--EEEE
T ss_pred CCCceEEEEEeccCCCCCCEEEEEEeCCC-------CCEEEeecc--cC------------CCCceEEECCCCC--EEEE
Confidence 3444455555 356789999876421 233333333 22 2366799999874 5566
Q ss_pred eeCC----CeEEEEEccC--CCccc------ccccEEEEEEecCCCCEEEEEe-CCCeEEEEecccccccccccceeccC
Q psy12356 88 STND----QSFNIVDIKP--TNMEE------LNEVITAAEFHPIDCNLFVYSS-SKGTIRLCDMRAAALCDRHSKCLIEG 154 (400)
Q Consensus 88 ss~D----~tI~lWd~~~--~~~~~------~~~~V~sv~f~p~~~~~las~s-~Dg~i~lWD~~~~~~~~~~~~~~~~~ 154 (400)
++.+ +.|++|+++. +.++. .......+++ ++ +++++++ .+++|.+||+.....+....... ..
T Consensus 67 ~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg-~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~-~~ 142 (361)
T 3scy_A 67 VNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NG-KNIVTANYSGGSITVFPIGQDGALLPASDVI-EF 142 (361)
T ss_dssp EECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CS-SEEEEEETTTTEEEEEEBCTTSCBCSCSEEE-EC
T ss_pred EEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CC-CEEEEEECCCCEEEEEEeCCCCcCcccceeE-Ec
Confidence 6554 7999999876 44321 2234566777 54 4444444 68999999997643221110000 00
Q ss_pred cccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccc------cCc--ccccccCCCCCCCccccccccc
Q psy12356 155 TNCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAAL------CDR--HSKFFEEPEDPTNKSFFSEIIS 225 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~h~~ 225 (400)
.............+...+...|++. ..+++..++.|++|++..... ... ...... ..+..
T Consensus 143 ~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~-----------~~~~~ 211 (361)
T 3scy_A 143 KGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFK-----------VAPGS 211 (361)
T ss_dssp CCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEE-----------CCTTC
T ss_pred cCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccccccee-----------cCCCC
Confidence 0000000000000001123346664 445555688999999875331 000 000000 01224
Q ss_pred CeEEEEECCCCcEEEE-e-cCCeEEEEeCCCC
Q psy12356 226 SISDVKISNSGRYMIS-R-DYLCVKVWDLHME 255 (400)
Q Consensus 226 ~V~~v~fSpdg~~las-~-~D~tIklWD~~~~ 255 (400)
....++|||||++|+. . .+++|++||+.++
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g 243 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADG 243 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETT
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCC
Confidence 5678999999998764 4 4799999999854
No 164
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.53 E-value=1.1e-11 Score=114.87 Aligned_cols=237 Identities=11% Similarity=0.139 Sum_probs=139.0
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE-eccCCc
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL-RRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s-p~~~~~ 83 (400)
.+.+++++|+|+++++...++.|++||.+.. .+..+...... ..+...+..+++. +++
T Consensus 31 ~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~------------~~~~~~~~~~~------~~~~~~p~~i~~~~~~g--- 89 (286)
T 1q7f_A 31 EPSGVAVNAQNDIIVADTNNHRIQIFDKEGR------------FKFQFGECGKR------DSQLLYPNRVAVVRNSG--- 89 (286)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTTSC------------EEEEECCBSSS------TTCBSSEEEEEEETTTT---
T ss_pred CCceEEECCCCCEEEEECCCCEEEEECCCCc------------EEEEecccCCC------cccccCceEEEEEcCCC---
Confidence 5789999999999999888999999997631 12233211100 0011236788885 433
Q ss_pred eEEEee--CCCeEEEEEccCCC-ccc----ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcc
Q psy12356 84 HFLLST--NDQSFNIVDIKPTN-MEE----LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 84 ~~l~ss--~D~tI~lWd~~~~~-~~~----~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
.++++. .++.|++||. +++ ... ....+.+++++|++ +++++...++.|.+||.... ..
T Consensus 90 ~l~v~~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~-~~------------ 154 (286)
T 1q7f_A 90 DIIVTERSPTHQIQIYNQ-YGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVIIFDQNGN-VL------------ 154 (286)
T ss_dssp EEEEEECGGGCEEEEECT-TSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEEECTTSC-EE------------
T ss_pred eEEEEcCCCCCEEEEECC-CCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEEEcCCCC-EE------------
Confidence 555554 3889999994 444 221 12457899999985 68888878899999996432 00
Q ss_pred cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC
Q psy12356 157 CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG 236 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg 236 (400)
+.+... ++...+..|+++|+|
T Consensus 155 ----------------------------------~~~~~~-------------------------~~~~~p~~i~~~~~g 175 (286)
T 1q7f_A 155 ----------------------------------HKFGCS-------------------------KHLEFPNGVVVNDKQ 175 (286)
T ss_dssp ----------------------------------EEEECT-------------------------TTCSSEEEEEECSSS
T ss_pred ----------------------------------EEeCCC-------------------------CccCCcEEEEECCCC
Confidence 000000 111347889999999
Q ss_pred cEEEEe-cCCeEEEEeCCCCCCceeeecCCC--cCCCCcccCCCCCceeecCcccccceeeccCccceeccc-ccc-ceE
Q psy12356 237 RYMISR-DYLCVKVWDLHMESRPVETYPTHT--KEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANA-HTY-HIN 311 (400)
Q Consensus 237 ~~las~-~D~tIklWD~~~~~~~l~~~~~h~--~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~-~~~-~i~ 311 (400)
+++++. .++.|++||... ..+..+..+. ..|.+ + .+.++. .++... ... .|.
T Consensus 176 ~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~----------i---~~d~~G--------~l~v~~~~~~~~i~ 232 (286)
T 1q7f_A 176 EIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIG----------V---GINSNG--------EILIADNHNNFNLT 232 (286)
T ss_dssp EEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEE----------E---EECTTC--------CEEEEECSSSCEEE
T ss_pred CEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcE----------E---EECCCC--------CEEEEeCCCCEEEE
Confidence 988774 579999999853 3455553321 11110 1 001110 111110 010 121
Q ss_pred EEEEcCCCcEEeecccchhhcccccceeEEEEccCCCEEEEecCCeEEEEeCcc
Q psy12356 312 SISVNSDQLTVEASPRGIFADAHTYHISSTSVNSDQETYLSADDLRINLWHLEI 365 (400)
Q Consensus 312 ~i~~s~dg~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~~D~~i~lW~~~~ 365 (400)
.|.++|+.+..-. ...+...+..++|+|||+++++..|++|++|+...
T Consensus 233 --~~~~~g~~~~~~~----~~~~~~~~~~i~~~~~g~l~vs~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 233 --IFTQDGQLISALE----SKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYVQ 280 (286)
T ss_dssp --EECTTSCEEEEEE----ESSCCSCEEEEEEETTTEEEEEETTTEEEEEECSC
T ss_pred --EECCCCCEEEEEc----ccCCCCcceeEEECCCCcEEEECCCCeEEEEEccc
Confidence 2334554332110 01122347789999999988886789999999764
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.52 E-value=3.1e-13 Score=138.68 Aligned_cols=147 Identities=7% Similarity=-0.024 Sum_probs=91.1
Q ss_pred ceeeEEEEEeccCCceEEEeeC-CCeEEEEEccCCCcc---ccc-ccEEEEEEecCCCCEEEEEeC---CCeEEEEeccc
Q psy12356 69 EKINKIRWLRRKNQAHFLLSTN-DQSFNIVDIKPTNME---ELN-EVITAAEFHPIDCNLFVYSSS---KGTIRLCDMRA 140 (400)
Q Consensus 69 ~~V~~v~~sp~~~~~~~l~ss~-D~tI~lWd~~~~~~~---~~~-~~V~sv~f~p~~~~~las~s~---Dg~i~lWD~~~ 140 (400)
..|.+++|+||+. ++++++. |++++||++++++.+ .+. ..+.+++|+|+ +++++++. +...+||.+..
T Consensus 22 ~~~~~~~~~~DG~--~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~~ 97 (582)
T 3o4h_A 22 VEKYSLQGVVDGD--KLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVNT 97 (582)
T ss_dssp SCEEEEEEEETTT--EEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEET
T ss_pred cchheeecCCCCC--eEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEec
Confidence 3589999999985 6777665 999999999877643 233 46889999996 56666664 56677777654
Q ss_pred --ccccccccceeccCcccceeceeccCchhhhhhcccCc--ceeecCCCCCeEEEeecccccccCcccccccCCCCCCC
Q psy12356 141 --AALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNR--REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTN 216 (400)
Q Consensus 141 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 216 (400)
.... ..+....... ... .++++ .+.++++.++.+ |||+.+++.. .
T Consensus 98 ~~~g~~----~~l~~~~~~~--~~~----------~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~-----~--------- 146 (582)
T 3o4h_A 98 SRPGEE----QRLEAVKPMR--ILS----------GVDTGEAVVFTGATEDRVA-LYALDGGGLR-----E--------- 146 (582)
T ss_dssp TSTTCC----EECTTSCSBE--EEE----------EEECSSCEEEEEECSSCEE-EEEEETTEEE-----E---------
T ss_pred cCCCcc----ccccCCCCce--eee----------eCCCCCeEEEEecCCCCce-EEEccCCcEE-----E---------
Confidence 2100 0111110101 011 12333 344444455554 9999876431 1
Q ss_pred cccccccccCeEEEEECCCCcEEEE-ecC----CeEEEEeCCCC
Q psy12356 217 KSFFSEIISSISDVKISNSGRYMIS-RDY----LCVKVWDLHME 255 (400)
Q Consensus 217 ~~~~~~h~~~V~~v~fSpdg~~las-~~D----~tIklWD~~~~ 255 (400)
+..+.. .+++|||||++||+ +.+ .+|++||+.++
T Consensus 147 ---l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g 185 (582)
T 3o4h_A 147 ---LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSG 185 (582)
T ss_dssp ---EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTC
T ss_pred ---eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCC
Confidence 112222 78999999999994 444 68999998865
No 166
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.47 E-value=3.9e-12 Score=132.22 Aligned_cols=110 Identities=7% Similarity=-0.044 Sum_probs=65.2
Q ss_pred eeEEEEEECCCCCeEEEe--cCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE--ec
Q psy12356 4 YMREASQRFSDGELLATG--DKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL--RR 79 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~--s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s--p~ 79 (400)
..|..++||+++.++++. +.++...||....+. . .+.+..|... +....++..-....|+ ||
T Consensus 24 ~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~--------~---~~~l~~~~~~---~~~~~~~~~~~~~~~~~SPD 89 (662)
T 3azo_A 24 GRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG--------A---EESALPAPWN---VRNRVFEYSGFPWAGVPRPA 89 (662)
T ss_dssp SCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS--------C---EEESSCTTCC---BCCCGGGTCCCCEEEECCSS
T ss_pred CccceeEEcCCeEEEEecCcccCCcEEEEEECCCC--------C---cceeCCCCcc---ccccccccCCccceeeeecC
Confidence 357889999998888887 678999999974321 1 1233334311 0000000001145566 88
Q ss_pred cCCce-EEEee-CCCeEEEEEcc--C-CCc---cc-----ccccEEEEEEecCCCCEEEEEeCC
Q psy12356 80 KNQAH-FLLST-NDQSFNIVDIK--P-TNM---EE-----LNEVITAAEFHPIDCNLFVYSSSK 130 (400)
Q Consensus 80 ~~~~~-~l~ss-~D~tI~lWd~~--~-~~~---~~-----~~~~V~sv~f~p~~~~~las~s~D 130 (400)
++ . ++.++ .+..|.+|++. + +.. .. +...+.+++|+||| +.|++++.|
T Consensus 90 g~--~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg-~~l~~~~~~ 150 (662)
T 3azo_A 90 GG--PLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPER-GEVWCMAEE 150 (662)
T ss_dssp SS--CEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTT-TEEEEEEEE
T ss_pred CC--eEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCC-CEEEEEEec
Confidence 74 5 45444 35667777776 3 442 22 34467899999986 678888765
No 167
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.44 E-value=2e-12 Score=122.35 Aligned_cols=115 Identities=10% Similarity=0.053 Sum_probs=75.8
Q ss_pred eEEEEEECCCCCeE-EEecCCCeEEEEEcCCCCccccCCCCcceeeeeee-ccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 5 MREASQRFSDGELL-ATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 5 ~v~~v~fspdG~~L-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
.+..++|+|||+++ +++..++.|++||+.+++ ....+. ++.+. .....+..++|+|++.
T Consensus 44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~-----------~~~~~~~~~~~~-------~~~~~~~~~~~spdg~- 104 (349)
T 1jmx_B 44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK-----------NTFHANLSSVPG-------EVGRSMYSFAISPDGK- 104 (349)
T ss_dssp SSCEEEECTTSSEEEEEETTTTEEEEEETTTTE-----------EEEEEESCCSTT-------EEEECSSCEEECTTSS-
T ss_pred CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCc-----------EEEEEEcccccc-------cccccccceEECCCCC-
Confidence 46789999999865 466678999999987532 223333 12100 0002266789999874
Q ss_pred ceEEEeeCC------------CeEEEEEccCCCcc------cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 83 AHFLLSTND------------QSFNIVDIKPTNME------ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 83 ~~~l~ss~D------------~tI~lWd~~~~~~~------~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
.+++++.+ ++|.+||+++++.. .....+.+++|+|++ ++++ ++ +.|++||+.+++.
T Consensus 105 -~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg-~l~~-~~--~~i~~~d~~~~~~ 178 (349)
T 1jmx_B 105 -EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDG-SLYV-AG--PDIYKMDVKTGKY 178 (349)
T ss_dssp -EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTS-CEEE-ES--SSEEEECTTTCCE
T ss_pred -EEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCC-cEEE-cc--CcEEEEeCCCCce
Confidence 56666544 89999999875421 122347788999986 4544 43 3499999988754
No 168
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.40 E-value=1.2e-11 Score=129.97 Aligned_cols=194 Identities=10% Similarity=0.006 Sum_probs=112.3
Q ss_pred eeEEEEEECCCCCeEE-----EecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe
Q psy12356 4 YMREASQRFSDGELLA-----TGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR 78 (400)
Q Consensus 4 ~~v~~v~fspdG~~La-----s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp 78 (400)
+.+.+++|||||++|| +|+.+.+|++||+.+++. +. ..+-.. .+...++|+|
T Consensus 121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~-----------~~--~~~~~~----------~~~~~~~wsp 177 (695)
T 2bkl_A 121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEW-----------SK--VDVIEG----------GKYATPKWTP 177 (695)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCB-----------CS--SCCBSC----------CTTCCCEECT
T ss_pred EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCC-----------cC--CcccCc----------ccccceEEec
Confidence 3688999999999999 667778999999987531 10 011100 0014688999
Q ss_pred ccCCceEEEeeCCCe-------------EEEEEccCCCcc--------cccccEEEEEEecCCCCEEEEEeCCC----eE
Q psy12356 79 RKNQAHFLLSTNDQS-------------FNIVDIKPTNME--------ELNEVITAAEFHPIDCNLFVYSSSKG----TI 133 (400)
Q Consensus 79 ~~~~~~~l~ss~D~t-------------I~lWd~~~~~~~--------~~~~~V~sv~f~p~~~~~las~s~Dg----~i 133 (400)
|+. .++.++.|.+ |++|++.++... .+...+.+++|+|+| +.++.++.++ .|
T Consensus 178 Dg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~l 254 (695)
T 2bkl_A 178 DSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDG-KYLFVYILRGWSENDV 254 (695)
T ss_dssp TSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTS-CCEEEEEEETTTEEEE
T ss_pred CCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCC-CEEEEEEeCCCCceEE
Confidence 974 6777777665 999999876521 122467899999997 5566655544 56
Q ss_pred EEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeec--CCCCCeEEEeecccccccCcccccccCC
Q psy12356 134 RLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKED--NRRKPAIRLCDMRAAALCDRHSKFFEEP 211 (400)
Q Consensus 134 ~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~dg~i~lWD~~~~~~~~~~~~~~~~~ 211 (400)
.+||..++... .+..... .......+ .......+ +..++.|.+||+.++... ..+.+
T Consensus 255 ~~~~~~~~~~~-----~l~~~~~-~~~~~~~~----------~g~l~~~s~~~~~~~~l~~~d~~~~~~~--~~~~l--- 313 (695)
T 2bkl_A 255 YWKRPGEKDFR-----LLVKGVG-AKYEVHAW----------KDRFYVLTDEGAPRQRVFEVDPAKPARA--SWKEI--- 313 (695)
T ss_dssp EEECTTCSSCE-----EEEECSS-CCEEEEEE----------TTEEEEEECTTCTTCEEEEEBTTBCSGG--GCEEE---
T ss_pred EEEcCCCCceE-----EeecCCC-ceEEEEec----------CCcEEEEECCCCCCCEEEEEeCCCCCcc--CCeEE---
Confidence 66655443211 1111000 00000001 11111111 124689999998764310 00111
Q ss_pred CCCCCccccccc-ccCeEEEEECCCCcEEEE-ecCCeEEEEeCC
Q psy12356 212 EDPTNKSFFSEI-ISSISDVKISNSGRYMIS-RDYLCVKVWDLH 253 (400)
Q Consensus 212 ~~~~~~~~~~~h-~~~V~~v~fSpdg~~las-~~D~tIklWD~~ 253 (400)
+..+ ...+.+++|+ +++++++ ..|+..+||.+.
T Consensus 314 --------~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~ 348 (695)
T 2bkl_A 314 --------VPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT 348 (695)
T ss_dssp --------ECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred --------ecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence 1112 2457888998 6677776 468888888665
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.39 E-value=1.5e-12 Score=125.71 Aligned_cols=270 Identities=7% Similarity=-0.023 Sum_probs=151.5
Q ss_pred EEEEEECCCCCeEEEecCC---CeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 6 REASQRFSDGELLATGDKG---GRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~D---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
+.+++|||||++||.+... ..|++||+.+++ ......++.. ....+.|+|++.
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~-----------~~~l~~~~~~------------~~~~~~~spdg~- 93 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQ-----------AVQLTEGKGD------------NTFGGFISTDER- 93 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTE-----------EEECCCSSCB------------CTTTCEECTTSS-
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCc-----------EEEeecCCCC------------ccccceECCCCC-
Confidence 5678899999999877543 468888887532 1111112211 122367999874
Q ss_pred ceEEEeeCCCeEEEEEccCCCcccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceece
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTNMEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGL 162 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
.++.++.++.|++||+.+++....... ...|+|++ +.|+..+.+....+|+....
T Consensus 94 -~l~~~~~~~~l~~~d~~~~~~~~~~~~--~~~~~~~g-~~l~~~~~~~~~~~~~~~~~--------------------- 148 (396)
T 3c5m_A 94 -AFFYVKNELNLMKVDLETLEEQVIYTV--DEEWKGYG-TWVANSDCTKLVGIEILKRD--------------------- 148 (396)
T ss_dssp -EEEEEETTTEEEEEETTTCCEEEEEEC--CTTEEEEE-EEEECTTSSEEEEEEEEGGG---------------------
T ss_pred -EEEEEEcCCcEEEEECCCCCcEEEEec--ccccCCCC-CEEEeccCCccccccccccc---------------------
Confidence 666778888999999988763211100 00155654 56777777777776653111
Q ss_pred eccCchhhhhhcccCcce--ee---cCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECC-CC
Q psy12356 163 IVPESKREERQSSQNRRE--KE---DNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN-SG 236 (400)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~--~~---~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp-dg 236 (400)
.+|++.. .. ....+..|.+||+.++... . +..+...+..+.||| ||
T Consensus 149 -----------~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~----~-------------~~~~~~~~~~~~~sp~dg 200 (396)
T 3c5m_A 149 -----------WQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE----V-------------IHQDTAWLGHPIYRPFDD 200 (396)
T ss_dssp -----------CCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE----E-------------EEEESSCEEEEEEETTEE
T ss_pred -----------cCCCCcceeeeeeccCCCcceEEEEECCCCcEE----e-------------eccCCcccccceECCCCC
Confidence 0111111 11 1134678999998765421 0 113345688999999 88
Q ss_pred cEEEE-ecC------CeEEEEeCCCCCCceeeecCC---------CcCCCCcccC-C---CC--CceeecCcccccceee
Q psy12356 237 RYMIS-RDY------LCVKVWDLHMESRPVETYPTH---------TKEENGQLRD-P---SN--ITALRVPQIKPIELTV 294 (400)
Q Consensus 237 ~~las-~~D------~tIklWD~~~~~~~l~~~~~h---------~~~~~g~~~~-~---~~--~~~i~l~~~~~~~~~~ 294 (400)
+.|+. +.+ ..|.+||+..+. ++.+..+ .++|+|+.+. . .. ...+.+|++...+.
T Consensus 201 ~~l~~~~~~~~~~~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~-- 276 (396)
T 3c5m_A 201 STVGFCHEGPHDLVDARMWLVNEDGSN--VRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN-- 276 (396)
T ss_dssp EEEEEEECSCSSSCSCCCEEEETTSCC--CEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE--
T ss_pred CEEEEEecCCCCCCCceEEEEECCCCc--eeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe--
Confidence 87763 322 468888987542 2222211 2568888531 1 11 13477776543221
Q ss_pred ccCccceeccccccceEEEEEcC-CCcEEeecc------------------cchh-----------hccccc--------
Q psy12356 295 EASPRRIFANAHTYHINSISVNS-DQLTVEASP------------------RGIF-----------ADAHTY-------- 336 (400)
Q Consensus 295 ~~~~~~~~~~~~~~~i~~i~~s~-dg~~~~~~~------------------~~~~-----------~~gh~~-------- 336 (400)
..+. . ... .. ..|+| ||++++... ..++ ...|..
T Consensus 277 ----~~l~-~-~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~ 348 (396)
T 3c5m_A 277 ----EEVM-V-MPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGD 348 (396)
T ss_dssp ----EEEE-E-CCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTB
T ss_pred ----EEee-e-CCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccc
Confidence 1111 0 111 22 78999 999876421 1111 013333
Q ss_pred ---ceeEEEEccCCCEEEEe--cCCeEEEEeCc
Q psy12356 337 ---HISSTSVNSDQETYLSA--DDLRINLWHLE 364 (400)
Q Consensus 337 ---~V~~i~fspDg~~las~--~D~~i~lW~~~ 364 (400)
.+..++|||||+.|+.+ .++...||.++
T Consensus 349 ~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~ 381 (396)
T 3c5m_A 349 RQITHPHPSFTPNDDGVLFTSDFEGVPAIYIAD 381 (396)
T ss_dssp SSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCCCCceEccCCCeEEEEecCCCCceEEEEE
Confidence 25678999999988874 36667777655
No 170
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.36 E-value=8.9e-11 Score=113.55 Aligned_cols=114 Identities=15% Similarity=0.131 Sum_probs=76.2
Q ss_pred EEEECCCCCeEEEec----------CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 8 ASQRFSDGELLATGD----------KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 8 ~v~fspdG~~Las~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
.++|||||++|.++. .+++|.+||..+.+ .+.++...... .........++++
T Consensus 54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~-----------~~~~i~~~~~~------~~~g~~p~~i~~s 116 (361)
T 2oiz_A 54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLT-----------FEKEISLPPKR------VQGLNYDGLFRQT 116 (361)
T ss_dssp EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCC-----------EEEEEEECTTB------CCBCCCGGGEEEC
T ss_pred ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCc-----------EEEEEEcCccc------cccCCCcceEEEC
Confidence 789999999999886 36789999987532 33333321100 0000124568999
Q ss_pred eccCCceEEEee-C-CCeEEEEEccCCCc-cc-cc-ccEEEEEEecCCCCEEEEEeCCCeEEEEeccc
Q psy12356 78 RRKNQAHFLLST-N-DQSFNIVDIKPTNM-EE-LN-EVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 78 p~~~~~~~l~ss-~-D~tI~lWd~~~~~~-~~-~~-~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~ 140 (400)
|++. .++++. . +++|.+||+++++. .. .. .....+.+.|++...+++.+.||.+.+|+...
T Consensus 117 pdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~ 182 (361)
T 2oiz_A 117 TDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGE 182 (361)
T ss_dssp TTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECT
T ss_pred CCCC--EEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECC
Confidence 9874 455554 3 68999999988763 22 11 12234667888767889999999999999865
No 171
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.33 E-value=2.3e-10 Score=120.34 Aligned_cols=109 Identities=14% Similarity=0.171 Sum_probs=76.5
Q ss_pred eeEEEEEECCCCCeEEEecCCC-----eEEEEEcCCCCccccCCCCcceeee-eeeccCcchhhcccccccceeeEEEEE
Q psy12356 4 YMREASQRFSDGELLATGDKGG-----RVVIFQRDPLSKTSIPKRGEYNVYS-TFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg-----~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
+.+..++|||||++||.++.++ +|++||+.+++ .+. ++.. .++..++|+
T Consensus 125 ~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~-----------~~~~~~~~--------------~~~~~~~ws 179 (710)
T 2xdw_A 125 VALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAK-----------ELPDVLER--------------VKFSCMAWT 179 (710)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTE-----------EEEEEEEE--------------ECSCCEEEC
T ss_pred EEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-----------CCcccccC--------------cccceEEEE
Confidence 4678999999999999765533 89999998642 111 1111 124568999
Q ss_pred eccCCceEEEeeCCCe----------------EEEEEccCCCcc------c--ccccEEEEEEecCCCCEEEEEeC----
Q psy12356 78 RRKNQAHFLLSTNDQS----------------FNIVDIKPTNME------E--LNEVITAAEFHPIDCNLFVYSSS---- 129 (400)
Q Consensus 78 p~~~~~~~l~ss~D~t----------------I~lWd~~~~~~~------~--~~~~V~sv~f~p~~~~~las~s~---- 129 (400)
||+. .++.++.|+. |++|++.+++.. . +...+.+++|+|++ +.|+.++.
T Consensus 180 pDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg-~~l~~~~~~~~~ 256 (710)
T 2xdw_A 180 HDGK--GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDG-RYVLLSIREGCD 256 (710)
T ss_dssp TTSS--EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECSSS
T ss_pred eCCC--EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCC-CEEEEEEEccCC
Confidence 9974 6777766655 999999876521 1 23347789999986 55665553
Q ss_pred -CCeEEEEeccc
Q psy12356 130 -KGTIRLCDMRA 140 (400)
Q Consensus 130 -Dg~i~lWD~~~ 140 (400)
+..|.+||+.+
T Consensus 257 ~~~~l~~~d~~~ 268 (710)
T 2xdw_A 257 PVNRLWYCDLQQ 268 (710)
T ss_dssp SCCEEEEEEGGG
T ss_pred CccEEEEEECcc
Confidence 57899999987
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.33 E-value=7.3e-11 Score=122.54 Aligned_cols=214 Identities=10% Similarity=0.058 Sum_probs=114.0
Q ss_pred EEEEC--CCCCe-EEEecC-CCeEEEEEcC--C-CCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEecc
Q psy12356 8 ASQRF--SDGEL-LATGDK-GGRVVIFQRD--P-LSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRK 80 (400)
Q Consensus 8 ~v~fs--pdG~~-Las~s~-Dg~I~iwd~~--~-~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~ 80 (400)
+..|+ |||++ ||.++. +..|++|++. + +. .+.+..+.. ..+...+..++|+||+
T Consensus 81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~------------~~~l~~~~~-------~~~~~~~~~~~~spDg 141 (662)
T 3azo_A 81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV------------PRPLTPVSA-------VGGGLRWADPVLLPER 141 (662)
T ss_dssp CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC------------CEECSCCCC-------STTCEEEEEEEEETTT
T ss_pred cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC------------CEeccCCcc-------CCCCccccCcEECCCC
Confidence 34454 99998 886654 5666666665 2 21 112222100 0001347789999998
Q ss_pred CCceEEEeeCC----------CeEEEEEccC------CCcc----cccccEEEEEEecCCCCEEEEEeCC--------Ce
Q psy12356 81 NQAHFLLSTND----------QSFNIVDIKP------TNME----ELNEVITAAEFHPIDCNLFVYSSSK--------GT 132 (400)
Q Consensus 81 ~~~~~l~ss~D----------~tI~lWd~~~------~~~~----~~~~~V~sv~f~p~~~~~las~s~D--------g~ 132 (400)
+ .+++++.| .+|++||+.+ +..+ .....+.+++|+||| +.|++++.+ ..
T Consensus 142 ~--~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG-~~la~~~~~~~~~~~~~~~ 218 (662)
T 3azo_A 142 G--EVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDG-RQAVWLAWDHPRMPWEGTE 218 (662)
T ss_dssp T--EEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTS-SEEEEEEECTTCCTTTCEE
T ss_pred C--EEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCC-CEEEEEECCCCCCCCCCcE
Confidence 5 66666655 5899999988 5532 223467789999986 677877754 37
Q ss_pred EEEEecc-cccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCC--eEEEeecccccccCccccccc
Q psy12356 133 IRLCDMR-AAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKP--AIRLCDMRAAALCDRHSKFFE 209 (400)
Q Consensus 133 i~lWD~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg--~i~lWD~~~~~~~~~~~~~~~ 209 (400)
|.+||+. ++..... ..+........... ..++++.....+..++ .|.+||+.++... ....
T Consensus 219 i~~~d~~~~g~~~~~--~~l~~~~~~~~~~~----------~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~----~l~~ 282 (662)
T 3azo_A 219 LKTARVTEDGRFADT--RTLLGGPEEAIAQA----------EWAPDGSLIVATDRTGWWNLHRVDPATGAAT----QLCR 282 (662)
T ss_dssp EEEEEECTTSCEEEE--EEEEEETTBCEEEE----------EECTTSCEEEEECTTSSCEEEEECTTTCCEE----ESSC
T ss_pred EEEEEECCCCccccc--EEeCCCCCceEcce----------EECCCCeEEEEECCCCCeEEEEEECCCCcee----eccc
Confidence 9999998 4511000 00100000111112 2235554545555677 5555565443221 1111
Q ss_pred CCCCCCCcccccccccCeEEEEECCCCcEEEEecCCeEEEEeCCCCCCceeeec
Q psy12356 210 EPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETYP 263 (400)
Q Consensus 210 ~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~~D~tIklWD~~~~~~~l~~~~ 263 (400)
.+. ..... .-.-.+.+++|+|++++++++.+++++||.+......++.+.
T Consensus 283 ~~~-~~~~p---~w~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l~ 332 (662)
T 3azo_A 283 REE-EFAGP---LWTPGMRWFAPLANGLIAVVHGKGAAVLGILDPESGELVDAA 332 (662)
T ss_dssp CSS-BSSCC---CCSTTCCSEEECTTSCEEEEEBSSSCEEEEEETTTTEEEECC
T ss_pred ccc-cccCc---cccccCceEeEeCCCEEEEEEEcCccEEEEEECCCCcEEEec
Confidence 000 00000 000115679999999998865338999994432222345543
No 173
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.31 E-value=1.4e-10 Score=110.25 Aligned_cols=215 Identities=10% Similarity=0.025 Sum_probs=129.6
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe-ccCC
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR-RKNQ 82 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp-~~~~ 82 (400)
..+..|+|+|+|+++++...+++|++||.+... ..+.++........ ....-..+..|+++| ++.
T Consensus 91 ~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~----------~~~~~~~~~~~~g~---~~~~~~~P~~ia~~~~~g~- 156 (329)
T 3fvz_A 91 YLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE----------GPLLILGRSMQPGS---DQNHFCQPTDVAVEPSTGA- 156 (329)
T ss_dssp SSEEEEEECTTSCEEEEETTTTEEEEECTTCSS----------CCSEEESBTTBCCC---STTCCSSEEEEEECTTTCC-
T ss_pred CCceEEEECCCCCEEEEECCCCEEEEEeCCCCe----------EEEEEecccCCCCC---CccccCCCcEEEEeCCCCe-
Confidence 357889999999999999999999999986421 11222311000000 000112478899998 442
Q ss_pred ceEEEee-CCCeEEEEEccCCCc-ccc-------------cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccc
Q psy12356 83 AHFLLST-NDQSFNIVDIKPTNM-EEL-------------NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRH 147 (400)
Q Consensus 83 ~~~l~ss-~D~tI~lWd~~~~~~-~~~-------------~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~ 147 (400)
.+++.+ .++.|++||.+ +.+ ... .....+++|+|++++++++...++.|++||..+++++...
T Consensus 157 -lyv~d~~~~~~I~~~~~~-g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~ 234 (329)
T 3fvz_A 157 -VFVSDGYCNSRIVQFSPS-GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI 234 (329)
T ss_dssp -EEEEECSSCCEEEEECTT-SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred -EEEEeCCCCCeEEEEcCC-CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence 444445 58999999954 442 111 1237899999985688888888999999999876443211
Q ss_pred cceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCe
Q psy12356 148 SKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSI 227 (400)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V 227 (400)
... ......+.+.+++ +.....++....++..+..|++||..++... ..+. +. .++....
T Consensus 235 ~~~---~~~~~~~~~~~~p----g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~----~~~~-~~--------~~~~~~p 294 (329)
T 3fvz_A 235 KHA---SFGRNVFAISYIP----GFLFAVNGKPYFGDQEPVQGFVMNFSSGEII----DVFK-PV--------RKHFDMP 294 (329)
T ss_dssp CCT---TTTTCEEEEEEET----TEEEEEECCCCTTCSCCCCEEEEETTTCCEE----EEEC-CS--------SSCCSSE
T ss_pred ecc---ccCCCcceeeecC----CEEEEeCCCEEeccCCCcEEEEEEcCCCeEE----EEEc-CC--------CCccCCe
Confidence 000 0011122222221 1111113333344456779999998876542 1221 00 1344668
Q ss_pred EEEEECCCCcEEEE-ecCCeEEEEeCCC
Q psy12356 228 SDVKISNSGRYMIS-RDYLCVKVWDLHM 254 (400)
Q Consensus 228 ~~v~fSpdg~~las-~~D~tIklWD~~~ 254 (400)
..|+|+|||+++++ ..++.|++|++..
T Consensus 295 ~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 295 HDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 89999999987776 4678999999874
No 174
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.30 E-value=2e-10 Score=109.02 Aligned_cols=108 Identities=14% Similarity=0.194 Sum_probs=70.0
Q ss_pred eEEEEEECCCCCeEEEecCC---Ce--EEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEec
Q psy12356 5 MREASQRFSDGELLATGDKG---GR--VVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR 79 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~D---g~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~ 79 (400)
.+.+++|||||++||.++.+ +. |++|++.+++ .. .+..+. . +..++|+|+
T Consensus 60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~-----------~~-~l~~~~------------~-~~~~~wspd 114 (347)
T 2gop_A 60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLS-----------SK-KILEAK------------N-IRSLEWNED 114 (347)
T ss_dssp SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTE-----------EE-EEEEES------------E-EEEEEECTT
T ss_pred cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCc-----------eE-EEEcCC------------C-ccceeECCC
Confidence 46789999999999988754 34 7777776431 11 121111 2 678999998
Q ss_pred cCCceEEEeeC---------------------------CCeEEEEEccCCCc-cccc-ccEEEEEEecCCCCEEEEEeCC
Q psy12356 80 KNQAHFLLSTN---------------------------DQSFNIVDIKPTNM-EELN-EVITAAEFHPIDCNLFVYSSSK 130 (400)
Q Consensus 80 ~~~~~~l~ss~---------------------------D~tI~lWd~~~~~~-~~~~-~~V~sv~f~p~~~~~las~s~D 130 (400)
+. .++.++. ...|.+||+.+++. +.+. ..+..++|+|++ ++++++.+
T Consensus 115 g~--~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg--~~~~~~~~ 190 (347)
T 2gop_A 115 SR--KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK--IVVNVPHR 190 (347)
T ss_dssp SS--EEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE--EEEEEECC
T ss_pred CC--EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe--EEEEEecc
Confidence 74 5666543 25799999988764 3221 156789999985 66666554
Q ss_pred C-------eEEEEecccc
Q psy12356 131 G-------TIRLCDMRAA 141 (400)
Q Consensus 131 g-------~i~lWD~~~~ 141 (400)
+ ..+||.+.++
T Consensus 191 ~~~~~~~~~~~l~~~d~~ 208 (347)
T 2gop_A 191 EIIPQYFKFWDIYIWEDG 208 (347)
T ss_dssp CSSCCSSCCEEEEEEETT
T ss_pred cccccccccccEEEeCCC
Confidence 2 4566666543
No 175
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.29 E-value=3.7e-11 Score=115.91 Aligned_cols=204 Identities=11% Similarity=0.042 Sum_probs=117.7
Q ss_pred EEEEEECCCCC--eEEEec-------------CCCeEEEEEcCCCCccccCCCCcceeeeeeec--cCcchhhccccccc
Q psy12356 6 REASQRFSDGE--LLATGD-------------KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQS--HEPEFDYLKSLEIE 68 (400)
Q Consensus 6 v~~v~fspdG~--~Las~s-------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~--h~~~~~~~~~~~~~ 68 (400)
+..++|+|||+ +|++++ .+|++++|+++... . ....+.. |.. .
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g--------~--~~~~~~~~~~~~----------~ 144 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG--------K--LEKNVQNYEYQE----------N 144 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC--------C--EEEEEEEEECCT----------T
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCC--------c--CcceEeeEEeCC----------C
Confidence 34578999999 466664 68999999997421 1 1112221 110 1
Q ss_pred ceeeEEEEEeccCCceEEEee-CCCeEEEEEcc-CCCcc---c-----ccccEEEEEEecCCCCEEEEEe-CCCeEEEEe
Q psy12356 69 EKINKIRWLRRKNQAHFLLST-NDQSFNIVDIK-PTNME---E-----LNEVITAAEFHPIDCNLFVYSS-SKGTIRLCD 137 (400)
Q Consensus 69 ~~V~~v~~sp~~~~~~~l~ss-~D~tI~lWd~~-~~~~~---~-----~~~~V~sv~f~p~~~~~las~s-~Dg~i~lWD 137 (400)
..+..++|+|+++ .++++. .+++|++||++ ++++. . +...+..++|+|++ ++++.++ .+++|++|+
T Consensus 145 ~~~~~~~~spdG~--~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg-~~l~v~~~~~~~v~v~~ 221 (365)
T 1jof_A 145 TGIHGMVFDPTET--YLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTG-NYLYALMEAGNRICEYV 221 (365)
T ss_dssp CCEEEEEECTTSS--EEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTS-SEEEEEETTTTEEEEEE
T ss_pred CcceEEEECCCCC--EEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCC-CEEEEEECCCCeEEEEE
Confidence 3478899999874 455544 47899999998 67632 1 13458899999986 5555555 478999998
Q ss_pred cc--cccccccccceeccCc----cc--------ceeceeccCchhhhhhcccCcce-eecCCCC-----CeEEEeeccc
Q psy12356 138 MR--AAALCDRHSKCLIEGT----NC--------NCQGLIVPESKREERQSSQNRRE-KEDNRRK-----PAIRLCDMRA 197 (400)
Q Consensus 138 ~~--~~~~~~~~~~~~~~~~----~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d-----g~i~lWD~~~ 197 (400)
+. ++.+.... ..+..+. .. ....+. +.+|++.. ..+...+ ++|++||+..
T Consensus 222 ~~~~~g~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~i~---------~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 222 IDPATHMPVYTH-HSFPLIPPGIPDRDPETGKGLYRADVC---------ALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp ECTTTCCEEEEE-EEEESSCTTCCCBCTTTSSBSEEEEEE---------EECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred EeCCCCcEEEcc-ceEEcCCCCcCCcccccccccccccEE---------EECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 75 34221000 0011110 00 122222 03466533 2222112 3899999963
Q ss_pred -ccccCcccccccCCCCCCCcccccccccCeEEEEECC---CCcEEEEe-c-CCeEEEEeCCCC
Q psy12356 198 -AALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISN---SGRYMISR-D-YLCVKVWDLHME 255 (400)
Q Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSp---dg~~las~-~-D~tIklWD~~~~ 255 (400)
+... .... .+..+...+..++||| ||++|+.+ . +++|+||++...
T Consensus 292 ~g~~~----~~~~---------~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 292 CGSIE----KQLF---------LSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TSCEE----EEEE---------EEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCEE----Eeee---------eeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 3211 0000 0001223456789999 89999865 3 589999999854
No 176
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.29 E-value=6.5e-11 Score=114.14 Aligned_cols=66 Identities=12% Similarity=0.240 Sum_probs=49.3
Q ss_pred EEEEeccCCceEEEeeC-CC--eEEEEEccCCCccc----ccccEEEEEEecCCCCEEEEEeCCCeEEEEeccccc
Q psy12356 74 IRWLRRKNQAHFLLSTN-DQ--SFNIVDIKPTNMEE----LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAA 142 (400)
Q Consensus 74 v~~sp~~~~~~~l~ss~-D~--tI~lWd~~~~~~~~----~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~ 142 (400)
.+|+||+. .++.++. ++ .|.+||+++++... +...+.+++|+|++ +.|++++.++.|++||+.+++
T Consensus 41 ~~~SpDg~--~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg-~~l~~~~~~~~l~~~d~~~g~ 113 (388)
T 3pe7_A 41 KCFTRDGS--KLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDD-DALFYVKDGRNLMRVDLATLE 113 (388)
T ss_dssp CCBCTTSC--EEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTS-SEEEEEETTTEEEEEETTTCC
T ss_pred ccCCCCCC--EEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCC-CEEEEEeCCCeEEEEECCCCc
Confidence 67999874 6666655 66 48888988876432 22233467899985 789999999999999999874
No 177
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.26 E-value=2.7e-09 Score=97.40 Aligned_cols=192 Identities=8% Similarity=-0.016 Sum_probs=116.0
Q ss_pred eEEEEEECCCCCeEE-EecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELLA-TGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~La-s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+.+++++|+|++.+ +...++.|.+||..+.. .... . ..+. ..+..+++.|++
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---------~~~~-~-~~~~------------~~p~~i~~~~~g--- 78 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---------TTVL-P-FNGL------------YQPQGLAVDGAG--- 78 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------------EEC-C-CCSC------------CSCCCEEECTTC---
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---------cceE-e-eCCc------------CCcceeEECCCC---
Confidence 678999999999888 55778999999875421 0000 0 0110 125678888765
Q ss_pred eEEEeeCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+.++..++.|.+||.+++..... ...+.+++++|++ +++++...++.|.+||..+...... ........
T Consensus 79 ~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~-----~~~~~~~p 152 (270)
T 1rwi_B 79 TVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGSKTQTVL-----PFTGLNDP 152 (270)
T ss_dssp CEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTCCSCEEC-----CCCSCCSC
T ss_pred CEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCCceeEee-----ccccCCCc
Confidence 355444488999999876553211 1457899999975 6888877889999998654421100 00000011
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
.++.+ .+++....+...++.|.+||....... ... ..+...+..|+++|+|++.
T Consensus 153 ~~i~~----------~~~g~l~v~~~~~~~i~~~~~~~~~~~-----~~~-----------~~~~~~p~~i~~d~~g~l~ 206 (270)
T 1rwi_B 153 DGVAV----------DNSGNVYVTDTDNNRVVKLEAESNNQV-----VLP-----------FTDITAPWGIAVDEAGTVY 206 (270)
T ss_dssp CCEEE----------CTTCCEEEEEGGGTEEEEECTTTCCEE-----ECC-----------CSSCCSEEEEEECTTCCEE
T ss_pred eeEEE----------eCCCCEEEEECCCCEEEEEecCCCceE-----eec-----------ccCCCCceEEEECCCCCEE
Confidence 12222 234444444445678999987653221 000 0112457899999999887
Q ss_pred EEe-cCCeEEEEeCCC
Q psy12356 240 ISR-DYLCVKVWDLHM 254 (400)
Q Consensus 240 as~-~D~tIklWD~~~ 254 (400)
++. .++.|.+||...
T Consensus 207 v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 207 VTEHNTNQVVKLLAGS 222 (270)
T ss_dssp EEETTTSCEEEECTTC
T ss_pred EEECCCCcEEEEcCCC
Confidence 765 578899998764
No 178
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.24 E-value=1.4e-09 Score=101.21 Aligned_cols=187 Identities=10% Similarity=0.024 Sum_probs=115.3
Q ss_pred EEEEEECCCCC-eEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFSDGE-LLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fspdG~-~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
..+++|+|+|+ +++++..++.|++||..++ .+.+..+. ..+..++++|++ .
T Consensus 30 ~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-------------~~~~~~~~------------~~~~~l~~~~dg---~ 81 (296)
T 3e5z_A 30 TEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-------------LSPEMHPS------------HHQNGHCLNKQG---H 81 (296)
T ss_dssp EEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-------------EEEEESSC------------SSEEEEEECTTC---C
T ss_pred ccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-------------eEEEECCC------------CCcceeeECCCC---c
Confidence 56899999999 7888888999999998742 22343333 237889999876 4
Q ss_pred EEEe-eCCCeEEEEEccCCCcccc--------cccEEEEEEecCCCCEEEEEeC-----------------CCeEEEEec
Q psy12356 85 FLLS-TNDQSFNIVDIKPTNMEEL--------NEVITAAEFHPIDCNLFVYSSS-----------------KGTIRLCDM 138 (400)
Q Consensus 85 ~l~s-s~D~tI~lWd~~~~~~~~~--------~~~V~sv~f~p~~~~~las~s~-----------------Dg~i~lWD~ 138 (400)
++++ ..++.|.+||.+++++... ...+++++++|+| +++++.+. .+.|..+|.
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~ 160 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAP 160 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECT
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccccccccccccccccCCCcEEEEECC
Confidence 5544 4578999999987774321 1235679999985 77787432 234444444
Q ss_pred ccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecc-cccc-cCcccccccCCCCCCC
Q psy12356 139 RAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMR-AAAL-CDRHSKFFEEPEDPTN 216 (400)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~-~~~~-~~~~~~~~~~~~~~~~ 216 (400)
. +.... +... .....++ ...+++....+++.++.|.+||+. .+.. .. .+.+.
T Consensus 161 ~-g~~~~-----~~~~-~~~~~gi----------~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~--~~~~~------- 214 (296)
T 3e5z_A 161 D-GTLSA-----PIRD-RVKPNGL----------AFLPSGNLLVSDTGDNATHRYCLNARGETEYQ--GVHFT------- 214 (296)
T ss_dssp T-SCEEE-----EECC-CSSEEEE----------EECTTSCEEEEETTTTEEEEEEECSSSCEEEE--EEEEC-------
T ss_pred C-CCEEE-----eecC-CCCCccE----------EECCCCCEEEEeCCCCeEEEEEECCCCcCcCC--CeEee-------
Confidence 3 31100 0000 0011122 223555333555678899999987 2221 00 01110
Q ss_pred cccccccccCeEEEEECCCCcEEEEecCCeEEEEeCC
Q psy12356 217 KSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLH 253 (400)
Q Consensus 217 ~~~~~~h~~~V~~v~fSpdg~~las~~D~tIklWD~~ 253 (400)
.+...+..++++|+|++.++. ++.|.+||..
T Consensus 215 -----~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~ 245 (296)
T 3e5z_A 215 -----VEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD 245 (296)
T ss_dssp -----CSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT
T ss_pred -----CCCCCCCeEEECCCCCEEEEc-CCeEEEECCC
Confidence 122445679999999988877 7889999976
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.24 E-value=1.1e-09 Score=103.60 Aligned_cols=191 Identities=10% Similarity=0.042 Sum_probs=116.7
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.+++|+|++..+++.+.++.+++|.-. ....+..+. ..+..++|+|++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~------------~~~~~~~~~~~g~-- 57 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTITAE--------------PWLEISKKG------------LQLEGLNFDRQGQ-- 57 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEECE--------------EEEEEESSC------------CCEEEEEECTTSC--
T ss_pred cccceeeecCCccceeEEeecccCcccccc--------------eeEEEeccC------------ccccCcEECCCCC--
Confidence 457889999999999998889999999321 123344443 2367889988763
Q ss_pred eEEEeeCCCeEEEEEccCCCccc----ccccEEEEEEecCCCCEEEEEeCC----CeEEEEecccccccccccceeccC-
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEE----LNEVITAAEFHPIDCNLFVYSSSK----GTIRLCDMRAAALCDRHSKCLIEG- 154 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~----~~~~V~sv~f~p~~~~~las~s~D----g~i~lWD~~~~~~~~~~~~~~~~~- 154 (400)
.++++..++.|.+||.++++... ....+.+++|+|++ ++++++..+ +.|.+||..++..... +...
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg-~l~v~~~~~~~~~~~i~~~d~~~~~~~~~----~~~~~ 132 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDG-RLFVCYLGDFKSTGGIFAATENGDNLQDI----IEDLS 132 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTS-CEEEEECTTSSSCCEEEEECTTSCSCEEE----ECSSS
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCC-cEEEEeCCCCCCCceEEEEeCCCCEEEEE----EccCc
Confidence 34456678999999998877432 33568999999985 677777666 6899999887743110 0000
Q ss_pred cccceeceeccCchhhhhhcccCcceeecCCC------CCeEEEeecccccccCcccccccCCCCCCCcccccccccCeE
Q psy12356 155 TNCNCQGLIVPESKREERQSSQNRREKEDNRR------KPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSIS 228 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 228 (400)
.......+.+ .+++....+... .+.|..+|...+.. ..+ ..+...+.
T Consensus 133 ~~~~~~~i~~----------d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~-----~~~------------~~~~~~~~ 185 (333)
T 2dg1_A 133 TAYCIDDMVF----------DSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTV-----TPI------------IQNISVAN 185 (333)
T ss_dssp SCCCEEEEEE----------CTTSCEEEEECCCBTTBCCEEEEEECTTSCCE-----EEE------------EEEESSEE
T ss_pred cCCcccceEE----------CCCCCEEEEeccccccCCCceEEEEeCCCCEE-----EEe------------ecCCCccc
Confidence 0111122222 234433332221 23344444332211 000 11223578
Q ss_pred EEEECCCCcEEE-E-ecCCeEEEEeCCC
Q psy12356 229 DVKISNSGRYMI-S-RDYLCVKVWDLHM 254 (400)
Q Consensus 229 ~v~fSpdg~~la-s-~~D~tIklWD~~~ 254 (400)
.++|+|||++|. + ..++.|.+||+.+
T Consensus 186 ~i~~~~dg~~l~v~~~~~~~i~~~d~~~ 213 (333)
T 2dg1_A 186 GIALSTDEKVLWVTETTANRLHRIALED 213 (333)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred ceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence 899999998654 4 3478999999975
No 180
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.23 E-value=7.4e-10 Score=105.08 Aligned_cols=92 Identities=12% Similarity=0.098 Sum_probs=61.6
Q ss_pred eEEEEEECCCCCeEEEec---------CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEE
Q psy12356 5 MREASQRFSDGELLATGD---------KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR 75 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s---------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~ 75 (400)
.+..++| ||++||... .++.|++||+.+++ . +.+ . .+..++
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~---------~---~~l--~--------------~~~~~~ 65 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNA---------R---RFI--E--------------NATMPR 65 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCC---------E---EEE--E--------------SCEEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCc---------e---EEc--c--------------cCCCeE
Confidence 4677888 999998752 26789999987532 1 122 1 256789
Q ss_pred EEeccCCceEEEeeCC---C--eEEEEEccCCCccc---ccccEEEEEEecCCCCEEEEEeCC
Q psy12356 76 WLRRKNQAHFLLSTND---Q--SFNIVDIKPTNMEE---LNEVITAAEFHPIDCNLFVYSSSK 130 (400)
Q Consensus 76 ~sp~~~~~~~l~ss~D---~--tI~lWd~~~~~~~~---~~~~V~sv~f~p~~~~~las~s~D 130 (400)
|+||+. .++..+.+ + .|.+||+++++... ... +.+++|+|++ +.|++++.+
T Consensus 66 ~SpDg~--~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~~~~wspdg-~~l~~~~~~ 124 (347)
T 2gop_A 66 ISPDGK--KIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IRSLEWNEDS-RKLLIVGFK 124 (347)
T ss_dssp ECTTSS--EEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EEEEEECTTS-SEEEEEEEC
T ss_pred ECCCCC--EEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-ccceeECCCC-CEEEEEEcc
Confidence 999984 56655432 3 47778888776322 233 8899999986 677777654
No 181
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.16 E-value=1.5e-09 Score=114.65 Aligned_cols=110 Identities=16% Similarity=0.133 Sum_probs=74.0
Q ss_pred eeEEEEEECCCCCeEEEecCC-----CeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe
Q psy12356 4 YMREASQRFSDGELLATGDKG-----GRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR 78 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~D-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp 78 (400)
+.+..++|||||++||.++.+ .+|++||+.+++ .+. ...+. .++..++|+|
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~-----------~~~-~~~~~------------~~~~~~~wsp 218 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGK-----------PLA-DELKW------------VKFSGLAWLG 218 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCC-----------EEE-EEEEE------------EESCCCEEST
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCC-----------CCC-ccCCC------------ceeccEEEEC
Confidence 367899999999999987643 469999998653 111 11111 1134688999
Q ss_pred ccCCceEEEeeCCC--------------eEEEEEccCCCcc------c--ccccEEEEEEecCCCCEEEEEeCC-----C
Q psy12356 79 RKNQAHFLLSTNDQ--------------SFNIVDIKPTNME------E--LNEVITAAEFHPIDCNLFVYSSSK-----G 131 (400)
Q Consensus 79 ~~~~~~~l~ss~D~--------------tI~lWd~~~~~~~------~--~~~~V~sv~f~p~~~~~las~s~D-----g 131 (400)
| . .++.++.|. .|++|++.++... . +...+.++.|+|+| +.++..+.+ .
T Consensus 219 D-~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG-~~l~~~~~~~~~~~~ 294 (741)
T 1yr2_A 219 N-D--ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDG-RWVVITSSEGTDPVN 294 (741)
T ss_dssp T-S--EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTS-CEEEEEEECTTCSCC
T ss_pred C-C--EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCC-CEEEEEEEccCCCcc
Confidence 8 5 677666544 3899998766421 1 11247899999986 566666544 3
Q ss_pred eEEEEecccc
Q psy12356 132 TIRLCDMRAA 141 (400)
Q Consensus 132 ~i~lWD~~~~ 141 (400)
.|.+||+.++
T Consensus 295 ~l~~~d~~~~ 304 (741)
T 1yr2_A 295 TVHVARVTNG 304 (741)
T ss_dssp EEEEEEEETT
T ss_pred eEEEEECCCC
Confidence 8999999876
No 182
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.15 E-value=5.6e-09 Score=96.47 Aligned_cols=195 Identities=8% Similarity=0.092 Sum_probs=120.6
Q ss_pred eEEEEEE-CCCCCeEEEecC-CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 5 MREASQR-FSDGELLATGDK-GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 5 ~v~~v~f-spdG~~Las~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
.+..++| .++|+++++... ++.|++||.+. +.+..+.... ...+..+++.|++.
T Consensus 78 ~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~g------------~~~~~~~~~~-----------~~~~~~i~~~~~g~- 133 (286)
T 1q7f_A 78 YPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG------------QFVRKFGATI-----------LQHPRGVTVDNKGR- 133 (286)
T ss_dssp SEEEEEEETTTTEEEEEECGGGCEEEEECTTS------------CEEEEECTTT-----------CSCEEEEEECTTSC-
T ss_pred CceEEEEEcCCCeEEEEcCCCCCEEEEECCCC------------cEEEEecCcc-----------CCCceEEEEeCCCC-
Confidence 5788999 588888887743 89999999542 1223332111 02377899988763
Q ss_pred ceEEEeeCCCeEEEEEccCCCccc-----ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc-c
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTNMEE-----LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT-N 156 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~~~~-----~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~-~ 156 (400)
.+++...++.|++||.+...... ....+.+++++|++ +++++.+.++.|++||.....+ .. +.... .
T Consensus 134 -l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~g~~~-~~----~~~~g~~ 206 (286)
T 1q7f_A 134 -IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQ-EIFISDNRAHCVKVFNYEGQYL-RQ----IGGEGIT 206 (286)
T ss_dssp -EEEEETTTTEEEEECTTSCEEEEEECTTTCSSEEEEEECSSS-EEEEEEGGGTEEEEEETTCCEE-EE----ESCTTTS
T ss_pred -EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcEEEEECCCC-CEEEEECCCCEEEEEcCCCCEE-EE----EccCCcc
Confidence 44445668999999975433221 22357899999985 6888888899999999754311 11 00000 0
Q ss_pred cceeceeccCchhhhhhcccCcceeecCCCCC-eEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 157 CNCQGLIVPESKREERQSSQNRREKEDNRRKP-AIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg-~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
....++.+ .+++...+++..++ .|++||... .. ...+..+ .....+.+++|+|+
T Consensus 207 ~~p~~i~~----------d~~G~l~v~~~~~~~~i~~~~~~g-~~----~~~~~~~----------~~~~~~~~i~~~~~ 261 (286)
T 1q7f_A 207 NYPIGVGI----------NSNGEILIADNHNNFNLTIFTQDG-QL----ISALESK----------VKHAQCFDVALMDD 261 (286)
T ss_dssp CSEEEEEE----------CTTCCEEEEECSSSCEEEEECTTS-CE----EEEEEES----------SCCSCEEEEEEETT
T ss_pred CCCcEEEE----------CCCCCEEEEeCCCCEEEEEECCCC-CE----EEEEccc----------CCCCcceeEEECCC
Confidence 11122222 24555555555565 999999542 21 1122111 11134678999999
Q ss_pred CcEEEEecCCeEEEEeCCCC
Q psy12356 236 GRYMISRDYLCVKVWDLHME 255 (400)
Q Consensus 236 g~~las~~D~tIklWD~~~~ 255 (400)
|+++++..|++|++|++...
T Consensus 262 g~l~vs~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 262 GSVVLASKDYRLYIYRYVQL 281 (286)
T ss_dssp TEEEEEETTTEEEEEECSCC
T ss_pred CcEEEECCCCeEEEEEcccc
Confidence 99888877899999998753
No 183
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.14 E-value=1.5e-08 Score=94.45 Aligned_cols=198 Identities=10% Similarity=0.117 Sum_probs=115.1
Q ss_pred EEEEEECCCCCeEEE-------ecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe
Q psy12356 6 REASQRFSDGELLAT-------GDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR 78 (400)
Q Consensus 6 v~~v~fspdG~~Las-------~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp 78 (400)
+.+++|+++|+++++ +..++.|.+||..+++ . ..+..... ......+..+++.|
T Consensus 20 ~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~---------~---~~~~~~~~-------~~~~~~~~~i~~~~ 80 (314)
T 1pjx_A 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK---------K---TVICKPEV-------NGYGGIPAGCQCDR 80 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC---------E---EEEECCEE-------TTEECCEEEEEECS
T ss_pred ccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc---------E---EEEEeccc-------CCCCCCCceEEEec
Confidence 568999999998888 6778999999976532 1 11211000 00113477889988
Q ss_pred c-cCCceEEEeeCCCeEEEEEccCCCcccc---------cccEEEEEEecCCCCEEEEEeCC---------------CeE
Q psy12356 79 R-KNQAHFLLSTNDQSFNIVDIKPTNMEEL---------NEVITAAEFHPIDCNLFVYSSSK---------------GTI 133 (400)
Q Consensus 79 ~-~~~~~~l~ss~D~tI~lWd~~~~~~~~~---------~~~V~sv~f~p~~~~~las~s~D---------------g~i 133 (400)
+ + .+.++..+..|.+||.+ +++... ...+++++++|++ +++++...+ +.|
T Consensus 81 ~~g---~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 81 DAN---QLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSS---EEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred CCC---cEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEEEecCcccccccccccccCCCCeE
Confidence 7 4 55655545578899987 664222 1247899999985 677776655 566
Q ss_pred EEEecccccccccccceeccCcccceeceeccCchhhhhhcc----cCc-ceeecCCCCCeEEEeecc-cccccCccccc
Q psy12356 134 RLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSS----QNR-REKEDNRRKPAIRLCDMR-AAALCDRHSKF 207 (400)
Q Consensus 134 ~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~~~~dg~i~lWD~~-~~~~~~~~~~~ 207 (400)
..||.. +.... +... .....++ ... +++ ....+...++.|.+||+. .+.... ...
T Consensus 156 ~~~~~~-g~~~~-----~~~~-~~~~~~i----------~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~--~~~ 216 (314)
T 1pjx_A 156 YCFTTD-GQMIQ-----VDTA-FQFPNGI----------AVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIEN--KKV 216 (314)
T ss_dssp EEECTT-SCEEE-----EEEE-ESSEEEE----------EEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEE--EEE
T ss_pred EEECCC-CCEEE-----eccC-CCCcceE----------EEecccCCCCCEEEEEECCCCeEEEEECCCCCcccc--ceE
Confidence 667655 32110 0000 0001111 112 343 333444457899999986 222100 001
Q ss_pred ccCCCCCCCcccccccc-cCeEEEEECCCCcEEEEe-cCCeEEEEeCCCC
Q psy12356 208 FEEPEDPTNKSFFSEII-SSISDVKISNSGRYMISR-DYLCVKVWDLHME 255 (400)
Q Consensus 208 ~~~~~~~~~~~~~~~h~-~~V~~v~fSpdg~~las~-~D~tIklWD~~~~ 255 (400)
+.. +.++. .....++++|+|++.++. .++.|.+||..++
T Consensus 217 ~~~---------~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g 257 (314)
T 1pjx_A 217 WGH---------IPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG 257 (314)
T ss_dssp EEE---------CCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB
T ss_pred EEE---------CCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC
Confidence 100 11222 446789999999988875 6789999988753
No 184
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.13 E-value=1.4e-09 Score=104.67 Aligned_cols=200 Identities=11% Similarity=0.082 Sum_probs=108.7
Q ss_pred EEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCc---chhhccccccc----ceeeEEEEEeccC
Q psy12356 9 SQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEP---EFDYLKSLEIE----EKINKIRWLRRKN 81 (400)
Q Consensus 9 v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~---~~~~~~~~~~~----~~V~~v~~sp~~~ 81 (400)
+.|||||++||.++.++.|++||+.+++ ....+..+.. ....+.-.... .....+.|+|++.
T Consensus 86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~-----------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~ 154 (396)
T 3c5m_A 86 GFISTDERAFFYVKNELNLMKVDLETLE-----------EQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTS 154 (396)
T ss_dssp CEECTTSSEEEEEETTTEEEEEETTTCC-----------EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCS
T ss_pred ceECCCCCEEEEEEcCCcEEEEECCCCC-----------cEEEEecccccCCCCCEEEeccCCccccccccccccCCCCc
Confidence 6799999999999999999999987643 1111222211 00000000000 0000134667653
Q ss_pred CceEEEe-----eCCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCC------CeEEEEecccccccccc
Q psy12356 82 QAHFLLS-----TNDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSK------GTIRLCDMRAAALCDRH 147 (400)
Q Consensus 82 ~~~~l~s-----s~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~D------g~i~lWD~~~~~~~~~~ 147 (400)
.++.. ..+..|.+||+.+++.. .....+..+.|+|+++..|+.++.+ ..|.+||+.++....
T Consensus 155 --~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~-- 230 (396)
T 3c5m_A 155 --WEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRK-- 230 (396)
T ss_dssp --HHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEE--
T ss_pred --ceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeE--
Confidence 33332 35678999999888743 2334688999999324566666553 358888876653110
Q ss_pred cceeccCc-ccceeceeccCchhhhhhcccCcc--eeec---CCCCCeEEEeecccccccCcccccccCCCCCCCccccc
Q psy12356 148 SKCLIEGT-NCNCQGLIVPESKREERQSSQNRR--EKED---NRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS 221 (400)
Q Consensus 148 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (400)
+.... ...+..+. .+|++. +.++ +..++.|.+||+.++... .+ .
T Consensus 231 ---l~~~~~~~~~~~~~----------~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~-----~l------------~ 280 (396)
T 3c5m_A 231 ---IKEHAEGESCTHEF----------WIPDGSAMAYVSYFKGQTDRVIYKANPETLENE-----EV------------M 280 (396)
T ss_dssp ---SSCCCTTEEEEEEE----------ECTTSSCEEEEEEETTTCCEEEEEECTTTCCEE-----EE------------E
T ss_pred ---eeccCCCccccceE----------ECCCCCEEEEEecCCCCccceEEEEECCCCCeE-----Ee------------e
Confidence 10000 00111122 234443 2221 112245999999765421 00 0
Q ss_pred ccccCeEEEEECC-CCcEEEEe-----------------cCCeEEEEeCCCC
Q psy12356 222 EIISSISDVKISN-SGRYMISR-----------------DYLCVKVWDLHME 255 (400)
Q Consensus 222 ~h~~~V~~v~fSp-dg~~las~-----------------~D~tIklWD~~~~ 255 (400)
.. .... +.|+| ||++++.+ ++..|.+||+.++
T Consensus 281 ~~-~~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 281 VM-PPCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp EC-CSEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTT
T ss_pred eC-CCCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccC
Confidence 00 1123 89999 99988752 2478999999865
No 185
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.10 E-value=4.4e-08 Score=92.36 Aligned_cols=197 Identities=11% Similarity=0.100 Sum_probs=116.7
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+.+++|+|||++++++..++.|++||..+++ +...+..+. ..+.+++|+|++. .
T Consensus 46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~-----------~~~~~~~~~------------~~~~~i~~~~dg~--l 100 (333)
T 2dg1_A 46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKE-----------IKRPFVSHK------------ANPAAIKIHKDGR--L 100 (333)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTCC-----------EEEEEECSS------------SSEEEEEECTTSC--E
T ss_pred cccCcEECCCCCEEEEECCCCEEEEEeCCCCc-----------EEEEeeCCC------------CCcceEEECCCCc--E
Confidence 35789999999988888899999999987532 111111222 3488899998763 3
Q ss_pred EEEeeCC----CeEEEEEccCCCccc------ccccEEEEEEecCCCCEEEEEeC------CCeEEEEeccccccccccc
Q psy12356 85 FLLSTND----QSFNIVDIKPTNMEE------LNEVITAAEFHPIDCNLFVYSSS------KGTIRLCDMRAAALCDRHS 148 (400)
Q Consensus 85 ~l~ss~D----~tI~lWd~~~~~~~~------~~~~V~sv~f~p~~~~~las~s~------Dg~i~lWD~~~~~~~~~~~ 148 (400)
+++...+ +.|.+||.+++.+.. ....+++++++|++ +++++... .+.|..+|..++....
T Consensus 101 ~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~--- 176 (333)
T 2dg1_A 101 FVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--- 176 (333)
T ss_dssp EEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCEEE---
T ss_pred EEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEEEE---
Confidence 4444445 689999998776431 22458899999985 67776654 2455555554432110
Q ss_pred ceeccCcccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeeccc-ccccCccc-ccccCCCCCCCccccccccc
Q psy12356 149 KCLIEGTNCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRA-AALCDRHS-KFFEEPEDPTNKSFFSEIIS 225 (400)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~h~~ 225 (400)
+... .....++. ..+++. .......++.|.+||++. +....... ..+. . +.++ .
T Consensus 177 --~~~~-~~~~~~i~----------~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~--------~-~~~~-~ 233 (333)
T 2dg1_A 177 --IIQN-ISVANGIA----------LSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPY--------Y-FTGH-E 233 (333)
T ss_dssp --EEEE-ESSEEEEE----------ECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEE--------E-CCSS-S
T ss_pred --eecC-CCcccceE----------ECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEE--------e-cCCC-C
Confidence 0000 00111122 224442 333334578999999863 21110000 0000 0 0112 3
Q ss_pred CeEEEEECCCCcEEEEe-cCCeEEEEeCC
Q psy12356 226 SISDVKISNSGRYMISR-DYLCVKVWDLH 253 (400)
Q Consensus 226 ~V~~v~fSpdg~~las~-~D~tIklWD~~ 253 (400)
.+..++++|+|++.++. .++.|.+||..
T Consensus 234 ~~~~i~~d~~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 234 GPDSCCIDSDDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp EEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCCceEECCCCCEEEEEcCCCEEEEECCC
Confidence 57789999999988765 57899999984
No 186
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.09 E-value=4.6e-07 Score=83.30 Aligned_cols=193 Identities=8% Similarity=0.009 Sum_probs=117.8
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..+.+++++|+|++.++...++.|.+||.. +. . ..+..... ...+..+++.+++.
T Consensus 15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~---------~---~~~~~~~~----------~~~~~~i~~~~~g~-- 69 (299)
T 2z2n_A 15 TGPYGITVSDKGKVWITQHKANMISCINLD-GK---------I---TEYPLPTP----------DAKVMCLTISSDGE-- 69 (299)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-CC---------E---EEEECSST----------TCCEEEEEECTTSC--
T ss_pred CCccceEECCCCCEEEEecCCCcEEEEcCC-CC---------e---EEecCCcc----------cCceeeEEECCCCC--
Confidence 358899999999988887778999999986 32 1 11211100 12477888887652
Q ss_pred eEEEeeCCCeEEEEEccCCCccc-----ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEE-----LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~-----~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
.+++...++.|..||.+ +.... ....+.+++++|++ .++++...++.|..||. ++..... ........
T Consensus 70 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~d~-~g~~~~~----~~~~~~~~ 142 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNG-DIWFTEMNGNRIGRITD-DGKIREY----ELPNKGSY 142 (299)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE----ECSSTTCC
T ss_pred EEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCC-CEEEEecCCceEEEECC-CCCEEEe----cCCCCCCC
Confidence 44444557889999976 44321 22357899999975 77787777889999998 4422100 00000011
Q ss_pred eeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcE
Q psy12356 159 CQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRY 238 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~ 238 (400)
...+.+ .+++....+...++.|..||. ++... .+..+ .+...+..++++|+|++
T Consensus 143 ~~~i~~----------~~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~~~~g~l 196 (299)
T 2z2n_A 143 PSFITL----------GSDNALWFTENQNNAIGRITE-SGDIT-----EFKIP----------TPASGPVGITKGNDDAL 196 (299)
T ss_dssp EEEEEE----------CTTSCEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECTTSSE
T ss_pred CceEEE----------cCCCCEEEEeCCCCEEEEEcC-CCcEE-----EeeCC----------CCCCcceeEEECCCCCE
Confidence 112211 234444444445678888887 43221 11111 12245789999999998
Q ss_pred EEEe-cCCeEEEEeCCCC
Q psy12356 239 MISR-DYLCVKVWDLHME 255 (400)
Q Consensus 239 las~-~D~tIklWD~~~~ 255 (400)
.++. .++.|.+||. ++
T Consensus 197 ~v~~~~~~~i~~~~~-~g 213 (299)
T 2z2n_A 197 WFVEIIGNKIGRITT-SG 213 (299)
T ss_dssp EEEETTTTEEEEECT-TC
T ss_pred EEEccCCceEEEECC-CC
Confidence 7765 4789999999 54
No 187
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.05 E-value=7.6e-08 Score=89.34 Aligned_cols=193 Identities=12% Similarity=0.111 Sum_probs=118.8
Q ss_pred CCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCCC
Q psy12356 13 SDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQ 92 (400)
Q Consensus 13 pdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~ 92 (400)
..|++|++++.|+.|++||.+++ +.+-.+..+.. ..+.++.++|++ .+++ +.++
T Consensus 3 ~~~~~lv~~~~~~~v~~~d~~tG-----------~~~w~~~~~~~-----------~~~~~~~~~pdG---~ilv-s~~~ 56 (276)
T 3no2_A 3 SPQHLLVGGSGWNKIAIINKDTK-----------EIVWEYPLEKG-----------WECNSVAATKAG---EILF-SYSK 56 (276)
T ss_dssp CCCEEEEECTTCSEEEEEETTTT-----------EEEEEEECCTT-----------CCCCEEEECTTS---CEEE-ECBS
T ss_pred CCCcEEEeeCCCCEEEEEECCCC-----------eEEEEeCCCcc-----------CCCcCeEECCCC---CEEE-eCCC
Confidence 45689999999999999998654 23445554431 136778899876 4555 5578
Q ss_pred eEEEEEccCCCc----ccc-cccEEEEEEecCCCCEEEEEeC-CCeEEEEecccccccccccceeccCcccceeceeccC
Q psy12356 93 SFNIVDIKPTNM----EEL-NEVITAAEFHPIDCNLFVYSSS-KGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPE 166 (400)
Q Consensus 93 tI~lWd~~~~~~----~~~-~~~V~sv~f~p~~~~~las~s~-Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (400)
.|+.||. +|+. ... ...+.++++.|++ +++++.+. ++.|..+|. +++++.... ..........
T Consensus 57 ~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG-~~lv~~~~~~~~v~~vd~-~Gk~l~~~~--~~~~~~~~~~------ 125 (276)
T 3no2_A 57 GAKMITR-DGRELWNIAAPAGCEMQTARILPDG-NALVAWCGHPSTILEVNM-KGEVLSKTE--FETGIERPHA------ 125 (276)
T ss_dssp EEEEECT-TSCEEEEEECCTTCEEEEEEECTTS-CEEEEEESTTEEEEEECT-TSCEEEEEE--ECCSCSSGGG------
T ss_pred CEEEECC-CCCEEEEEcCCCCccccccEECCCC-CEEEEecCCCCEEEEEeC-CCCEEEEEe--ccCCCCcccc------
Confidence 8999998 5652 111 2357889999985 67787776 788888886 443322110 0000000000
Q ss_pred chhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEEe-cCC
Q psy12356 167 SKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISR-DYL 245 (400)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~-~D~ 245 (400)
....+...+++..+++...++.|..||.. ++.. ..+.. .....++.+.|+|++++++ .++
T Consensus 126 -~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~----w~~~~-------------~~~~~~~~~~~~g~~~v~~~~~~ 186 (276)
T 3no2_A 126 -QFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL----NSVKL-------------SGTPFSSAFLDNGDCLVACGDAH 186 (276)
T ss_dssp -SCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE----EEEEC-------------SSCCCEEEECTTSCEEEECBTTS
T ss_pred -cccCceECCCCCEEEEecCCCEEEEECCC-CCEE----EEEEC-------------CCCccceeEcCCCCEEEEeCCCC
Confidence 00011123455555556678999999987 5431 11111 1245568889999998875 457
Q ss_pred eEEEEeCCCCCCceeee
Q psy12356 246 CVKVWDLHMESRPVETY 262 (400)
Q Consensus 246 tIklWD~~~~~~~l~~~ 262 (400)
.|..+|..++. .+-++
T Consensus 187 ~v~~~d~~tG~-~~w~~ 202 (276)
T 3no2_A 187 CFVQLNLESNR-IVRRV 202 (276)
T ss_dssp EEEEECTTTCC-EEEEE
T ss_pred eEEEEeCcCCc-EEEEe
Confidence 89999998764 45554
No 188
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.01 E-value=1.8e-07 Score=88.85 Aligned_cols=189 Identities=10% Similarity=0.032 Sum_probs=115.4
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+..+.++ ++++.++...+++|.+||..+.+ .++++... ..+..++++|++ +
T Consensus 45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~-----------~~~~i~~~-------------~~p~~i~~~~~g---~ 96 (328)
T 3dsm_A 45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFK-----------EVGRITGF-------------TSPRYIHFLSDE---K 96 (328)
T ss_dssp CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCC-----------EEEEEECC-------------SSEEEEEEEETT---E
T ss_pred cceEEEEE-CCEEEEEEcCCCEEEEEECcccE-----------EEEEcCCC-------------CCCcEEEEeCCC---e
Confidence 35677774 45666667778999999998642 34445322 236788998875 4
Q ss_pred EEEee-CCCeEEEEEccCCCccc---ccc------cEEEEEEecCCCCEEEEEe-CCCeEEEEecccccccccccceecc
Q psy12356 85 FLLST-NDQSFNIVDIKPTNMEE---LNE------VITAAEFHPIDCNLFVYSS-SKGTIRLCDMRAAALCDRHSKCLIE 153 (400)
Q Consensus 85 ~l~ss-~D~tI~lWd~~~~~~~~---~~~------~V~sv~f~p~~~~~las~s-~Dg~i~lWD~~~~~~~~~~~~~~~~ 153 (400)
+.++. .++.|.+||.+++++.. ... ....+++ . ++.++++.. .+++|.++|+.+++..... ..
T Consensus 97 lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~~~~~i----~~ 170 (328)
T 3dsm_A 97 AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDKVVDEL----TI 170 (328)
T ss_dssp EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTEEEEEE----EC
T ss_pred EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCeEEEEE----Ec
Confidence 55554 79999999998876321 112 3456677 3 456666665 4899999999988543211 00
Q ss_pred CcccceeceeccCchhhhhhcccCcceeecCCC----------CCeEEEeecccccccCcccccccCCCCCCCccccccc
Q psy12356 154 GTNCNCQGLIVPESKREERQSSQNRREKEDNRR----------KPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEI 223 (400)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 223 (400)
......+ ...+++........ .+.|.++|..+++.. +.+..+ .
T Consensus 171 --g~~p~~i----------~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~----~~~~~~-----------~ 223 (328)
T 3dsm_A 171 --GIQPTSL----------VMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVE----KQFKFK-----------L 223 (328)
T ss_dssp --SSCBCCC----------EECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEE----EEEECC-----------T
T ss_pred --CCCccce----------EEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEE----EEEecC-----------C
Confidence 0011111 22244433333222 278999998865432 111111 0
Q ss_pred ccCeEEEEECCCCcEEEEecCCeEEEEeCCCC
Q psy12356 224 ISSISDVKISNSGRYMISRDYLCVKVWDLHME 255 (400)
Q Consensus 224 ~~~V~~v~fSpdg~~las~~D~tIklWD~~~~ 255 (400)
......++|+||+++|..++. +|.+||..++
T Consensus 224 g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~ 254 (328)
T 3dsm_A 224 GDWPSEVQLNGTRDTLYWINN-DIWRMPVEAD 254 (328)
T ss_dssp TCCCEEEEECTTSCEEEEESS-SEEEEETTCS
T ss_pred CCCceeEEEecCCCEEEEEcc-EEEEEECCCC
Confidence 124688999999998875543 8889998865
No 189
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.01 E-value=8.8e-08 Score=94.09 Aligned_cols=213 Identities=10% Similarity=0.049 Sum_probs=122.4
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+..|+|+|+|+++++...++.|++||..++. +.++.... .... ++|+|+++ .
T Consensus 132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~------------~~~~~~~~------------~~~~-ia~~~~g~--~ 184 (409)
T 3hrp_A 132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNK------------VTTVHPGF------------KGGK-PAVTKDKQ--R 184 (409)
T ss_dssp CEEEEEECSTTEEEEEETTTTEEEEEETTTTE------------EEEEEETC------------CBCB-CEECTTSS--E
T ss_pred CceEEEEeCCCCEEEEecCCCcEEEEECCCCE------------EEEeeccC------------CCCc-eeEecCCC--c
Confidence 57899999999998888888999999987531 12222111 1133 88988763 5
Q ss_pred EEEeeCCC--eEEEEEccCCCc-cc-------ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccC
Q psy12356 85 FLLSTNDQ--SFNIVDIKPTNM-EE-------LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEG 154 (400)
Q Consensus 85 ~l~ss~D~--tI~lWd~~~~~~-~~-------~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~ 154 (400)
++++..++ .|.++|..++.. .. ......+++++|+++.+++ +..++.|+.||..++.............
T Consensus 185 l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~ 263 (409)
T 3hrp_A 185 VYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGS 263 (409)
T ss_dssp EEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSC
T ss_pred EEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCC
Confidence 55555544 788888765542 11 2234678999996555555 6668899999988763210000000000
Q ss_pred ccccee-ceeccCchhhhhhccc-CcceeecCCCCCeEEEeecccccccCcccccccCCC--CCCCc-ccccccccCeEE
Q psy12356 155 TNCNCQ-GLIVPESKREERQSSQ-NRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPE--DPTNK-SFFSEIISSISD 229 (400)
Q Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~h~~~V~~ 229 (400)
...... ++.+ .+ ++....+....+.|+.||..... ..+.+.. ..... ......-.....
T Consensus 264 ~~~~P~~~ia~----------~p~~g~lyv~d~~~~~I~~~~~~g~~------~~~~g~~~~~g~~dg~~~~~~~~~P~g 327 (409)
T 3hrp_A 264 LGTNPGPYLIY----------YFVDSNFYMSDQNLSSVYKITPDGEC------EWFCGSATQKTVQDGLREEALFAQPNG 327 (409)
T ss_dssp CCCSSCCEEEE----------ETTTTEEEEEETTTTEEEEECTTCCE------EEEEECTTCCSCBCEEGGGCBCSSEEE
T ss_pred CCCCccccEEE----------eCCCCEEEEEeCCCCEEEEEecCCCE------EEEEeCCCCCCcCCCcccccEeCCCeE
Confidence 000001 2222 24 35555566678899999875321 1111100 00000 000011135788
Q ss_pred EEECCCCcEEEE-e-cCCeEEEEeCCCCCCceeeec
Q psy12356 230 VKISNSGRYMIS-R-DYLCVKVWDLHMESRPVETYP 263 (400)
Q Consensus 230 v~fSpdg~~las-~-~D~tIklWD~~~~~~~l~~~~ 263 (400)
++|+|+|+++++ . .++.|+.||+.++ .+.++-
T Consensus 328 ia~d~dG~lyvad~~~~~~I~~~~~~~G--~v~~~~ 361 (409)
T 3hrp_A 328 MTVDEDGNFYIVDGFKGYCLRKLDILDG--YVSTVA 361 (409)
T ss_dssp EEECTTCCEEEEETTTTCEEEEEETTTT--EEEEEE
T ss_pred EEEeCCCCEEEEeCCCCCEEEEEECCCC--EEEEEe
Confidence 999999997776 5 6789999997654 244443
No 190
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.00 E-value=1.4e-08 Score=98.09 Aligned_cols=200 Identities=10% Similarity=0.040 Sum_probs=111.5
Q ss_pred EEEEEECCCCCeEEEecC--CCeEEEEEcCCCCccccCCCCcceeeee-eeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 6 REASQRFSDGELLATGDK--GGRVVIFQRDPLSKTSIPKRGEYNVYST-FQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
+..++|||||++|.++.. +++|.+||+.+. +.+.+ +.... ...+.+.|++.
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~-----------~~~~~~i~~~~--------------~~~v~~~p~~~- 163 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKG-----------DYVEDVTAAAG--------------CWSVIPQPNRP- 163 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTT-----------EEEEEEGGGTT--------------EEEEEECTTSS-
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCC-----------cEEEEEecCCC--------------cceeEEcCCCC-
Confidence 346899999999998863 689999999853 23333 32111 11244566652
Q ss_pred ceEEEeeCCCeEEEEEccC-CCcccc----------cccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccccccccee
Q psy12356 83 AHFLLSTNDQSFNIVDIKP-TNMEEL----------NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCL 151 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~-~~~~~~----------~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~ 151 (400)
..+++.+.|+.+.+|+++. ++.... ...+ .+.++|++ ..++..+.++.|.++|+............+
T Consensus 164 ~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g-~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~ 241 (361)
T 2oiz_A 164 RSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDK-DKAHFVSYYGNVYSADFSGDEVKVDGPWSL 241 (361)
T ss_dssp SEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECS-SEEEEEBTTSEEEEEECSSSSCEEEEEEES
T ss_pred eeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccC-CEEEEEeCCCeEEEEEecCCCceecccccc
Confidence 3566678899999998864 432100 0111 23345664 456667788999999987552110000000
Q ss_pred ccCcc-cceeceeccCchhhhhhcccC-cceeecC---C-------CCCeEEEeecccccccCcccccccCCCCCCCccc
Q psy12356 152 IEGTN-CNCQGLIVPESKREERQSSQN-RREKEDN---R-------RKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSF 219 (400)
Q Consensus 152 ~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~-------~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (400)
..... ...+. + .....+.+.++ ..+.+.. + ..++|.+||+.+.+.. +.+
T Consensus 242 ~~~~~~~~~~~---p-~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v----~~i----------- 302 (361)
T 2oiz_A 242 LNDEDKAKNWV---P-GGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV----ARI----------- 302 (361)
T ss_dssp CCHHHHHTTCE---E-CCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE----EEE-----------
T ss_pred cCccccccccc---c-CCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE----EEE-----------
Confidence 00000 00000 0 00000111233 2222211 1 2458999999876532 111
Q ss_pred ccccccCeEEEEECCCCcEEEEecCCeEEEEeCCCC
Q psy12356 220 FSEIISSISDVKISNSGRYMISRDYLCVKVWDLHME 255 (400)
Q Consensus 220 ~~~h~~~V~~v~fSpdg~~las~~D~tIklWD~~~~ 255 (400)
..+. ..+|+|||||++|+++++++|.+||..++
T Consensus 303 -~~~~--p~~ia~spdg~~l~v~n~~~v~v~D~~t~ 335 (361)
T 2oiz_A 303 -PGRD--ALSMTIDQQRNLMLTLDGGNVNVYDISQP 335 (361)
T ss_dssp -ECTT--CCEEEEETTTTEEEEECSSCEEEEECSSS
T ss_pred -ecCC--eeEEEECCCCCEEEEeCCCeEEEEECCCC
Confidence 1232 78999999999998765699999999985
No 191
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=98.99 E-value=4.4e-08 Score=102.88 Aligned_cols=129 Identities=10% Similarity=0.087 Sum_probs=76.4
Q ss_pred eeeEEEEEeccCCceEEEeeC-CC----eEEEEEccCCCcccc---cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 70 KINKIRWLRRKNQAHFLLSTN-DQ----SFNIVDIKPTNMEEL---NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 70 ~V~~v~~sp~~~~~~~l~ss~-D~----tI~lWd~~~~~~~~~---~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+..++||||++ .++.++. +| +|++||+++++.... ...+.+++|+||+ +.|++++.|+. .+
T Consensus 126 ~~~~~~~SPDg~--~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg-~~l~~~~~~~~-------~~ 195 (710)
T 2xdw_A 126 ALRGYAFSEDGE--YFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDG-KGMFYNAYPQQ-------DG 195 (710)
T ss_dssp EEEEEEECTTSS--EEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTS-SEEEEEECCCC-------SS
T ss_pred EEEEEEECCCCC--EEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCC-CEEEEEEECCc-------cc
Confidence 377899999985 5665432 22 899999999874321 1225679999986 67888877654 00
Q ss_pred cccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccc
Q psy12356 142 ALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS 221 (400)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (400)
.. . . . .. .......|++|++.++...+. ..+..+
T Consensus 196 ~~-~---~---~--------------------------~~-~~~~~~~v~~~~l~t~~~~~~--~v~~~~---------- 229 (710)
T 2xdw_A 196 KS-D---G---T--------------------------ET-STNLHQKLYYHVLGTDQSEDI--LCAEFP---------- 229 (710)
T ss_dssp CC-S---S---S--------------------------CC-CCCCCCEEEEEETTSCGGGCE--EEECCT----------
T ss_pred cc-c---c---c--------------------------cc-ccCCCCEEEEEECCCCcccce--EEeccC----------
Confidence 00 0 0 0 00 001234566666654432111 111111
Q ss_pred ccccCeEEEEECCCCcEEEE-ec-----CCeEEEEeCCC
Q psy12356 222 EIISSISDVKISNSGRYMIS-RD-----YLCVKVWDLHM 254 (400)
Q Consensus 222 ~h~~~V~~v~fSpdg~~las-~~-----D~tIklWD~~~ 254 (400)
.|...+.++.|||||++|+. +. +..|.+||+.+
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~ 268 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQ 268 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGG
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcc
Confidence 23345778999999999873 32 56899999986
No 192
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=98.98 E-value=3.7e-08 Score=103.25 Aligned_cols=60 Identities=8% Similarity=0.164 Sum_probs=42.9
Q ss_pred eeeEEEEEeccCCceEEEe-----eCCCeEEEEEccCCCcc--cccccE--EEEEEecCCCCEEEEEeCCCe
Q psy12356 70 KINKIRWLRRKNQAHFLLS-----TNDQSFNIVDIKPTNME--ELNEVI--TAAEFHPIDCNLFVYSSSKGT 132 (400)
Q Consensus 70 ~V~~v~~sp~~~~~~~l~s-----s~D~tI~lWd~~~~~~~--~~~~~V--~sv~f~p~~~~~las~s~Dg~ 132 (400)
.+..++||||+. .++.+ +.+.+|++||+++++.. .+...+ .+++|+||+ +.|++++.|..
T Consensus 122 ~~~~~~~SPDG~--~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg-~~l~~~~~d~~ 190 (695)
T 2bkl_A 122 SLGTWAVSWDGK--KVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDS-KGFYYEWLPTD 190 (695)
T ss_dssp EEEEEEECTTSS--EEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTS-SEEEEEECCCC
T ss_pred EEEEEEECCCCC--EEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCC-CEEEEEEecCC
Confidence 478899999985 55532 23579999999998743 122222 688999986 68888888764
No 193
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.96 E-value=1.1e-08 Score=99.54 Aligned_cols=103 Identities=10% Similarity=0.161 Sum_probs=81.7
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
|+.|+| ||++|+++ .++.|++||+.... .......|+. .|.++.+.+. .+
T Consensus 90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~-----------~~~~~~~~~~------------~v~~i~~~~p----~~ 139 (388)
T 1xip_A 90 VIFVCF--HGDQVLVS-TRNALYSLDLEELS-----------EFRTVTSFEK------------PVFQLKNVNN----TL 139 (388)
T ss_dssp EEEEEE--ETTEEEEE-ESSEEEEEESSSTT-----------CEEEEEECSS------------CEEEEEECSS----EE
T ss_pred eeEEEE--CCCEEEEE-cCCcEEEEEchhhh-----------ccCccceeec------------ceeeEEecCC----CE
Confidence 889999 99999999 88999999987532 1223445542 3677776642 37
Q ss_pred EEeeCCCeEEEEEccCCCcccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 86 LLSTNDQSFNIVDIKPTNMEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
+++..||++.+||++++....+...|++++|||+| ++.+..||++++|+...+
T Consensus 140 av~~~dG~L~v~dl~~~~~~~~~~~Vs~v~WSpkG---~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 140 VILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQ---LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEESEEEEEECSSE---EEEEETTSCEEEEEEETT
T ss_pred EEEECCCCEEEEEccCCccccccCCceEEEEcCCc---eEEEEcCCcEEEEcCCCc
Confidence 77889999999999988765667789999999985 578899999999988766
No 194
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=98.95 E-value=1.4e-08 Score=98.89 Aligned_cols=113 Identities=11% Similarity=0.126 Sum_probs=71.4
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
++.+++++...++|+|+.| .++||++.+.........+..... ....+.. |.+|+| ++. .+
T Consensus 40 ~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~-------------~~~~lp~-V~~l~f--d~~--~L 100 (388)
T 1xip_A 40 LQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFK-------------WEKEIPD-VIFVCF--HGD--QV 100 (388)
T ss_dssp CBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCS-------------EEEECTT-EEEEEE--ETT--EE
T ss_pred ccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccce-------------EEeeCCC-eeEEEE--CCC--EE
Confidence 6889999999999999988 466799764220000000001110 0111224 899999 552 44
Q ss_pred EEeeCCCeEEEEEccCCC----cccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 86 LLSTNDQSFNIVDIKPTN----MEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~----~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
+++ .++.|++||+.+.. ...+...+.++.+.+. + +|.+..||+|.+||+.++
T Consensus 101 ~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~ 156 (388)
T 1xip_A 101 LVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTK 156 (388)
T ss_dssp EEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTC
T ss_pred EEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCC
Confidence 455 88999999987543 1233445677666552 3 788888999999998766
No 195
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.92 E-value=9.9e-07 Score=90.27 Aligned_cols=205 Identities=13% Similarity=0.048 Sum_probs=117.7
Q ss_pred CCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCC
Q psy12356 12 FSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND 91 (400)
Q Consensus 12 spdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D 91 (400)
+|.+.++++...+++|.++|..+. +++.++.... .+..+.|+||+. .+.+++.|
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~-----------~v~~~i~~g~-------------~p~~v~~SpDGr--~lyv~~~d 217 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTY-----------EIKTVLDTGY-------------AVHISRLSASGR--YLFVIGRD 217 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTC-----------CEEEEEECSS-------------CEEEEEECTTSC--EEEEEETT
T ss_pred CCCceEEEEeCCCCeEEEEECCCC-----------eEEEEEeCCC-------------CccceEECCCCC--EEEEEcCC
Confidence 345567778888999999999864 2344443221 256789999874 55567889
Q ss_pred CeEEEEEcc--CCCc-ccc--cccEEEEEEe----cCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceece
Q psy12356 92 QSFNIVDIK--PTNM-EEL--NEVITAAEFH----PIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGL 162 (400)
Q Consensus 92 ~tI~lWd~~--~~~~-~~~--~~~V~sv~f~----p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
+.|.+||+. +++. ... ...-..++|+ |+|..++++...+++|.++|..+.+.+....-.-....... +
T Consensus 218 g~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~-~-- 294 (567)
T 1qks_A 218 GKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQE-Y-- 294 (567)
T ss_dssp SEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCC-E--
T ss_pred CeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccccccc-c--
Confidence 999999995 5442 111 2235689999 68755555555689999999887744321100000000000 0
Q ss_pred eccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEE
Q psy12356 163 IVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMIS 241 (400)
Q Consensus 163 ~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las 241 (400)
.++.....+..++++ ........+|.|.++|........ +... +.......+.|+|||++++.
T Consensus 295 -~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~--v~~i-------------~~~~~~~d~~~~pdgr~~~v 358 (567)
T 1qks_A 295 -HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLK--TTEI-------------SAERFLHDGGLDGSHRYFIT 358 (567)
T ss_dssp -ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEE--EEEE-------------ECCSSEEEEEECTTSCEEEE
T ss_pred -cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccce--eeee-------------eccccccCceECCCCCEEEE
Confidence 000000001111221 223333467889998876532100 0000 11134567899999998764
Q ss_pred -e-cCCeEEEEeCCCCCCceeee
Q psy12356 242 -R-DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 242 -~-~D~tIklWD~~~~~~~l~~~ 262 (400)
. .+++|.++|+.++. .+..+
T Consensus 359 a~~~sn~V~ViD~~t~k-l~~~i 380 (567)
T 1qks_A 359 AANARNKLVVIDTKEGK-LVAIE 380 (567)
T ss_dssp EEGGGTEEEEEETTTTE-EEEEE
T ss_pred EeCCCCeEEEEECCCCc-EEEEE
Confidence 3 46899999999863 44444
No 196
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.90 E-value=7.2e-08 Score=101.13 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=109.4
Q ss_pred eeEEEEEECCCCCeEE-----EecCCCeEEEEEcCCCCccccCCCCcceeee-eeeccCcchhhcccccccceeeEEEEE
Q psy12356 4 YMREASQRFSDGELLA-----TGDKGGRVVIFQRDPLSKTSIPKRGEYNVYS-TFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 4 ~~v~~v~fspdG~~La-----s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
+.|..++|||||++|| .|+.+.+|+|||+.+++ .+. .+.+. +...++|+
T Consensus 129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~-----------~~~~~~~~~--------------k~~~~~Ws 183 (693)
T 3iuj_A 129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQ-----------PLETPLKDV--------------KFSGISWL 183 (693)
T ss_dssp CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCS-----------EEEEEEEEE--------------ESCCCEEE
T ss_pred EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCC-----------CCccccCCc--------------eeccEEEe
Confidence 3678899999999999 45555789999998753 111 11111 12467899
Q ss_pred eccCCceEEEeeCCC-------------eEEEEEccCCCc------c--c-ccccEEEEEEecCCCCEEEEEeC---CCe
Q psy12356 78 RRKNQAHFLLSTNDQ-------------SFNIVDIKPTNM------E--E-LNEVITAAEFHPIDCNLFVYSSS---KGT 132 (400)
Q Consensus 78 p~~~~~~~l~ss~D~-------------tI~lWd~~~~~~------~--~-~~~~V~sv~f~p~~~~~las~s~---Dg~ 132 (400)
|++ .++.++.|. .|++|++.++.. . . +...+.++.|+|++..++++.+. ++.
T Consensus 184 -Dg~--~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~ 260 (693)
T 3iuj_A 184 -GNE--GFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNR 260 (693)
T ss_dssp -TTT--EEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCE
T ss_pred -CCC--EEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcE
Confidence 874 677666653 499999976541 1 1 22346789999997555555543 258
Q ss_pred EEEEecccccccccccceeccCcccceeceeccCchhhhhhcccCc-ceeec--CCCCCeEEEeecccccccCccccccc
Q psy12356 133 IRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNR-REKED--NRRKPAIRLCDMRAAALCDRHSKFFE 209 (400)
Q Consensus 133 i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~dg~i~lWD~~~~~~~~~~~~~~~ 209 (400)
|.+||+.++.... ..+...... .... + ..... +...+ +...+.|..+|+.++... ..+.
T Consensus 261 i~~~d~~~~~~~~---~~l~~~~~~-~~~~-~---------~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~--~~~~-- 322 (693)
T 3iuj_A 261 LYVKDLSQENAPL---LTVQGDLDA-DVSL-V---------DNKGSTLYLLTNRDAPNRRLVTVDAANPGPA--HWRD-- 322 (693)
T ss_dssp EEEEETTSTTCCC---EEEECSSSS-CEEE-E---------EEETTEEEEEECTTCTTCEEEEEETTSCCGG--GCEE--
T ss_pred EEEEECCCCCCce---EEEeCCCCc-eEEE-E---------eccCCEEEEEECCCCCCCEEEEEeCCCCCcc--ccEE--
Confidence 9999987762100 001000000 0000 0 01111 11111 123468888888764321 0111
Q ss_pred CCCCCCCcccccccccCeEEEEECCCCcEEEE-e-cCC--eEEEEeCCC
Q psy12356 210 EPEDPTNKSFFSEIISSISDVKISNSGRYMIS-R-DYL--CVKVWDLHM 254 (400)
Q Consensus 210 ~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las-~-~D~--tIklWD~~~ 254 (400)
+..|...+. .|+|+++.|+. . .++ .|++||+..
T Consensus 323 ----------l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g 359 (693)
T 3iuj_A 323 ----------LIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEG 359 (693)
T ss_dssp ----------EECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred ----------EecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCC
Confidence 123334444 89999998874 3 344 688998874
No 197
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=98.88 E-value=1.5e-07 Score=87.39 Aligned_cols=196 Identities=8% Similarity=-0.008 Sum_probs=107.9
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..+.+++|+|||+++++...++.|.+||..+++ ...+ ...+... ....++.+++.|++.
T Consensus 69 ~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~---------~~~~--~~~~~~~--------~~~~~~~i~~d~~G~-- 127 (296)
T 3e5z_A 69 HHQNGHCLNKQGHLIACSHGLRRLERQREPGGE---------WESI--ADSFEGK--------KLNSPNDVCLAPDGS-- 127 (296)
T ss_dssp SSEEEEEECTTCCEEEEETTTTEEEEECSTTCC---------EEEE--ECEETTE--------ECCCCCCEEECTTSC--
T ss_pred CCcceeeECCCCcEEEEecCCCeEEEEcCCCCc---------EEEE--eeccCCC--------CCCCCCCEEECCCCC--
Confidence 357899999999999988888999999986532 1111 1111100 012367789988763
Q ss_pred eEEEeeCC---------------CeEEEEEccC-CCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecc-cccc
Q psy12356 84 HFLLSTND---------------QSFNIVDIKP-TNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMR-AAAL 143 (400)
Q Consensus 84 ~~l~ss~D---------------~tI~lWd~~~-~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~-~~~~ 143 (400)
.+++.+.. +.-+||.++. +.+. ......++++|+|++ +++++.+.++.|.+||+. .+.+
T Consensus 128 l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg-~~lv~~~~~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 128 LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSG-NLLVSDTGDNATHRYCLNARGET 206 (296)
T ss_dssp EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTS-CEEEEETTTTEEEEEEECSSSCE
T ss_pred EEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCC-CEEEEeCCCCeEEEEEECCCCcC
Confidence 44442110 1224555543 4432 223456899999986 556777788999999987 3322
Q ss_pred -cccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccc
Q psy12356 144 -CDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSE 222 (400)
Q Consensus 144 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (400)
... ..+ ....... +++...+++...++. ++.|.+||.. +... ..+ ..
T Consensus 207 ~~~~--~~~-~~~~~~p----------~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~----~~~------------~~ 254 (296)
T 3e5z_A 207 EYQG--VHF-TVEPGKT----------DGLRVDAGGLIWASA--GDGVHVLTPD-GDEL----GRV------------LT 254 (296)
T ss_dssp EEEE--EEE-CCSSSCC----------CSEEEBTTSCEEEEE--TTEEEEECTT-SCEE----EEE------------EC
T ss_pred cCCC--eEe-eCCCCCC----------CeEEECCCCCEEEEc--CCeEEEECCC-CCEE----EEE------------EC
Confidence 000 001 0000011 112222445444333 7889999976 3221 111 12
Q ss_pred cccCeEEEEE-CCCCcEEEEecCCeEEEEeCCC
Q psy12356 223 IISSISDVKI-SNSGRYMISRDYLCVKVWDLHM 254 (400)
Q Consensus 223 h~~~V~~v~f-Spdg~~las~~D~tIklWD~~~ 254 (400)
+.. +.+++| +|+++.|..++.+.+.-++..+
T Consensus 255 ~~~-~~~~~f~~~d~~~L~v~t~~~l~~~~~~~ 286 (296)
T 3e5z_A 255 PQT-TSNLCFGGPEGRTLYMTVSTEFWSIETNV 286 (296)
T ss_dssp SSC-CCEEEEESTTSCEEEEEETTEEEEEECSC
T ss_pred CCC-ceeEEEECCCCCEEEEEcCCeEEEEEccc
Confidence 334 788999 6999877654333332334443
No 198
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=98.83 E-value=2.8e-07 Score=83.77 Aligned_cols=193 Identities=7% Similarity=-0.017 Sum_probs=120.3
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+.+++|+|+|+++++.. ++.|.+||..+.. ...+.... ...+..+++.|++. .
T Consensus 68 ~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~------------~~~~~~~~-----------~~~p~~i~~~~~g~--l 121 (270)
T 1rwi_B 68 QPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNN------------QTVLPFDG-----------LNYPEGLAVDTQGA--V 121 (270)
T ss_dssp SCCCEEECTTCCEEEEET-TTEEEEECTTCSC------------CEECCCCS-----------CSSEEEEEECTTCC--E
T ss_pred CcceeEECCCCCEEEEcC-CCEEEEEeCCCce------------EeeeecCC-----------cCCCcceEECCCCC--E
Confidence 467899999999777776 8899999986431 11111111 02367888988652 4
Q ss_pred EEEeeCCCeEEEEEccCCCcc--c--ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccccee
Q psy12356 85 FLLSTNDQSFNIVDIKPTNME--E--LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQ 160 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~--~--~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~ 160 (400)
+++...++.|.+||..+.... . ......+++++|++ +++++...++.|.+||..+....... ...+ ....
T Consensus 122 ~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~~~~~---~~~~--~~p~ 195 (270)
T 1rwi_B 122 YVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQVVLP---FTDI--TAPW 195 (270)
T ss_dssp EEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCEEECC---CSSC--CSEE
T ss_pred EEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCceEeec---ccCC--CCce
Confidence 444456789999976544321 1 11346789999975 68888777899999998776321100 0000 1122
Q ss_pred ceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE
Q psy12356 161 GLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI 240 (400)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la 240 (400)
++.+ .+++....+...++.|.+||....... .. + ..+...+.+++++|+|++++
T Consensus 196 ~i~~----------d~~g~l~v~~~~~~~v~~~~~~~~~~~-----~~--~---------~~~~~~p~~i~~~~~g~l~v 249 (270)
T 1rwi_B 196 GIAV----------DEAGTVYVTEHNTNQVVKLLAGSTTST-----VL--P---------FTGLNTPLAVAVDSDRTVYV 249 (270)
T ss_dssp EEEE----------CTTCCEEEEETTTSCEEEECTTCSCCE-----EC--C---------CCSCSCEEEEEECTTCCEEE
T ss_pred EEEE----------CCCCCEEEEECCCCcEEEEcCCCCcce-----ee--c---------cCCCCCceeEEECCCCCEEE
Confidence 2222 244445555556788999987643210 00 0 01224678999999999777
Q ss_pred E-ecCCeEEEEeCCCC
Q psy12356 241 S-RDYLCVKVWDLHME 255 (400)
Q Consensus 241 s-~~D~tIklWD~~~~ 255 (400)
+ ..+++|++++....
T Consensus 250 ~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 250 ADRGNDRVVKLTSLEH 265 (270)
T ss_dssp EEGGGTEEEEECCCGG
T ss_pred EECCCCEEEEEcCCCc
Confidence 6 46899999998854
No 199
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.81 E-value=2e-05 Score=72.13 Aligned_cols=191 Identities=7% Similarity=-0.002 Sum_probs=115.3
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+.++.++++|++.++...++.|.+||.. +. .... .+..+. ..+..+++.+++. .
T Consensus 21 ~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~---------~~~~-~~~~~~------------~~~~~i~~~~~g~--l 75 (300)
T 2qc5_A 21 GPYGITSSEDGKVWFTQHKANKISSLDQS-GR---------IKEF-EVPTPD------------AKVMCLIVSSLGD--I 75 (300)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SC---------EEEE-ECSSTT------------CCEEEEEECTTSC--E
T ss_pred CcceeeECCCCCEEEEcCCCCeEEEECCC-Cc---------eEEE-ECCCCC------------CcceeEEECCCCC--E
Confidence 57899999999988888788999999976 32 1111 111110 2367788877652 3
Q ss_pred EEEeeCCCeEEEEEccCCCccc-----ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEE-----LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~-----~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+++...++.|..+|.+ ++... ....+.+++++|++ +++++...++.|..+|.. +..... .. .......
T Consensus 76 ~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~~-g~~~~~---~~-~~~~~~~ 148 (300)
T 2qc5_A 76 WFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNG-DIWFTQLNGDRIGKLTAD-GTIYEY---DL-PNKGSYP 148 (300)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTT-CEEEEETTTTEEEEECTT-SCEEEE---EC-SSTTCCE
T ss_pred EEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCC-CEEEEccCCCeEEEECCC-CCEEEc---cC-CCCCCCc
Confidence 4444457889999987 55321 12457899999975 777877778899999987 422100 00 0000111
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
..+.+ .+++....+...++.|..+|. .+... .+..+ .+...+..++++|+|++.
T Consensus 149 ~~i~~----------d~~g~l~v~~~~~~~i~~~~~-~g~~~-----~~~~~----------~~~~~~~~i~~d~~g~l~ 202 (300)
T 2qc5_A 149 AFITL----------GSDNALWFTENQNNSIGRITN-TGKLE-----EYPLP----------TNAAAPVGITSGNDGALW 202 (300)
T ss_dssp EEEEE----------CTTSSEEEEETTTTEEEEECT-TCCEE-----EEECS----------STTCCEEEEEECTTSSEE
T ss_pred eeEEE----------CCCCCEEEEecCCCeEEEECC-CCcEE-----EeeCC----------CCCCCcceEEECCCCCEE
Confidence 12222 133334333344677888887 33211 11111 122457899999999988
Q ss_pred EEe-cCCeEEEEeCC
Q psy12356 240 ISR-DYLCVKVWDLH 253 (400)
Q Consensus 240 as~-~D~tIklWD~~ 253 (400)
++. ..+.|.+||..
T Consensus 203 v~~~~~~~i~~~~~~ 217 (300)
T 2qc5_A 203 FVEIMGNKIGRITTT 217 (300)
T ss_dssp EEETTTTEEEEECTT
T ss_pred EEccCCCEEEEEcCC
Confidence 775 46789999983
No 200
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=98.80 E-value=5.2e-06 Score=84.90 Aligned_cols=200 Identities=10% Similarity=-0.014 Sum_probs=119.1
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE----ecc
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL----RRK 80 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s----p~~ 80 (400)
.+..+.|||||++|.+++.|+.|.+||+... ..+.+.++... .....++|+ ||+
T Consensus 198 ~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~---------t~~~v~~i~~G-------------~~P~~ia~s~~~~pDG 255 (567)
T 1qks_A 198 AVHISRLSASGRYLFVIGRDGKVNMIDLWMK---------EPTTVAEIKIG-------------SEARSIETSKMEGWED 255 (567)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEETTSS---------SCCEEEEEECC-------------SEEEEEEECCSTTCTT
T ss_pred CccceEECCCCCEEEEEcCCCeEEEEECCCC---------CCcEeEEEecC-------------CCCceeEEccccCCCC
Confidence 5678999999999999999999999998511 11233334321 125678999 676
Q ss_pred CCceEEEee-CCCeEEEEEccCCCc-cc-------------c-cccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccc
Q psy12356 81 NQAHFLLST-NDQSFNIVDIKPTNM-EE-------------L-NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALC 144 (400)
Q Consensus 81 ~~~~~l~ss-~D~tI~lWd~~~~~~-~~-------------~-~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~ 144 (400)
. .++++. .+++|.++|..+.+. +. + ...+.++.+++++...+++...+|.|.++|.......
T Consensus 256 k--~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~ 333 (567)
T 1qks_A 256 K--YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNL 333 (567)
T ss_dssp T--EEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEE
T ss_pred C--EEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccc
Confidence 3 455554 579999999877652 11 1 1147788888887666666667899999998764211
Q ss_pred ccccceeccCcccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccC-CCCCCCcccccc
Q psy12356 145 DRHSKCLIEGTNCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEE-PEDPTNKSFFSE 222 (400)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 222 (400)
.. ..+.. .....+.. ..+++ +...+...+++|.++|+.+++... .... .. ..
T Consensus 334 ~v--~~i~~--~~~~~d~~----------~~pdgr~~~va~~~sn~V~ViD~~t~kl~~----~i~vgg~--------~P 387 (567)
T 1qks_A 334 KT--TEISA--ERFLHDGG----------LDGSHRYFITAANARNKLVVIDTKEGKLVA----IEDTGGQ--------TP 387 (567)
T ss_dssp EE--EEEEC--CSSEEEEE----------ECTTSCEEEEEEGGGTEEEEEETTTTEEEE----EEECSSS--------SB
T ss_pred ee--eeeec--cccccCce----------ECCCCCEEEEEeCCCCeEEEEECCCCcEEE----EEeccCc--------CC
Confidence 00 00000 00001111 12333 334444467899999998765421 1100 00 02
Q ss_pred cccCeEEEEECCCCc-EEEEe--cCCeEEEEeCCCC
Q psy12356 223 IISSISDVKISNSGR-YMISR--DYLCVKVWDLHME 255 (400)
Q Consensus 223 h~~~V~~v~fSpdg~-~las~--~D~tIklWD~~~~ 255 (400)
|.+....+ ++|++. ..+++ ++++|.++|..++
T Consensus 388 hpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~ 422 (567)
T 1qks_A 388 HPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPE 422 (567)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTT
T ss_pred CCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCC
Confidence 32222122 689855 44554 5789999999873
No 201
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=98.80 E-value=2.8e-07 Score=97.32 Aligned_cols=127 Identities=13% Similarity=0.136 Sum_probs=74.2
Q ss_pred eeeEEEEEeccCCceEEEeeCC-----CeEEEEEccCCCccc-cccc--EEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 70 KINKIRWLRRKNQAHFLLSTND-----QSFNIVDIKPTNMEE-LNEV--ITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 70 ~V~~v~~sp~~~~~~~l~ss~D-----~tI~lWd~~~~~~~~-~~~~--V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+..++||||++ .++.++.+ .+|++||+++++... .... +.+++|+|| +.|++++.|+..+ .+
T Consensus 164 ~~~~~~~SPDG~--~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~~~~wspD--~~l~~~~~~~~~~-----~~ 234 (741)
T 1yr2_A 164 ALDAWAASDDGR--LLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFSGLAWLGN--DALLYSRFAEPKE-----GQ 234 (741)
T ss_dssp EEEEEEECTTSS--EEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESCCCEESTT--SEEEEEECCCC---------
T ss_pred EEEeEEECCCCC--EEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceeccEEEECC--CEEEEEEecCccc-----cc
Confidence 477899999985 56654322 479999999988422 1112 257899997 5677777765411 01
Q ss_pred cccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccc
Q psy12356 142 ALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS 221 (400)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (400)
... .......|++|++.++...+. ..+..+
T Consensus 235 ~~~--------------------------------------~~~~~~~v~~~~lgt~~~~~~--lv~~~~---------- 264 (741)
T 1yr2_A 235 AFQ--------------------------------------ALNYNQTVWLHRLGTPQSADQ--PVFATP---------- 264 (741)
T ss_dssp ------------------------------------------CCCCCEEEEEETTSCGGGCE--EEECCT----------
T ss_pred ccc--------------------------------------cCCCCCEEEEEECCCCchhCE--EEeccC----------
Confidence 000 001233566666654332111 112111
Q ss_pred ccccCeEEEEECCCCcEEEE-ecC-----CeEEEEeCCCC
Q psy12356 222 EIISSISDVKISNSGRYMIS-RDY-----LCVKVWDLHME 255 (400)
Q Consensus 222 ~h~~~V~~v~fSpdg~~las-~~D-----~tIklWD~~~~ 255 (400)
.+...+.++.|||||++|+. +.+ ..|++||+.++
T Consensus 265 ~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~ 304 (741)
T 1yr2_A 265 ELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNG 304 (741)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred CCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence 22235789999999998873 433 48999999875
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.79 E-value=3.6e-06 Score=81.49 Aligned_cols=115 Identities=11% Similarity=0.090 Sum_probs=73.0
Q ss_pred EEEECCCCCeEEEec----------CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 8 ASQRFSDGELLATGD----------KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 8 ~v~fspdG~~Las~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
.++|||||++|..+. .+++|.+||..+.+ ...++.--... ... .......++|+
T Consensus 70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~-----------~~~~i~~~~~~-~~~----~g~~p~~~~~s 133 (373)
T 2mad_H 70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFL-----------PIADIELPDAP-RFD----VGPYSWMNANT 133 (373)
T ss_pred CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCc-----------EEEEEECCCcc-ccc----cCCCccceEEC
Confidence 789999999999885 36789999987532 22222110000 000 00113468899
Q ss_pred eccCCceEEEee-C-CCeEEEEEccCCCcccc-cccEEEEEEecCCCCEEEEEeCCCeEEEEeccccc
Q psy12356 78 RRKNQAHFLLST-N-DQSFNIVDIKPTNMEEL-NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAA 142 (400)
Q Consensus 78 p~~~~~~~l~ss-~-D~tI~lWd~~~~~~~~~-~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~ 142 (400)
||+. .++++. . +++|.++| ++++.... -..-.++.+.|++...+++.+.||.+..+|. +++
T Consensus 134 pDG~--~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~ 197 (373)
T 2mad_H 134 PNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGG 197 (373)
T ss_pred CCCC--EEEEEecCCCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCc
Confidence 9974 555554 3 58899999 88874221 1111235667777778888889999999999 764
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=98.67 E-value=2e-06 Score=79.84 Aligned_cols=201 Identities=9% Similarity=0.073 Sum_probs=112.6
Q ss_pred eeEEEEEECCC-CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeee-eccCcchhhcccccccceeeEEEEEeccC
Q psy12356 4 YMREASQRFSD-GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTF-QSHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 4 ~~v~~v~fspd-G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~-~~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
..+.+++++|+ |+++++.. ++.|.+||.. ++ . ..+ ...... .....+.++++.|++.
T Consensus 71 ~~~~~i~~~~~~g~l~v~~~-~~~l~~~d~~-g~---------~---~~~~~~~~~~-------~~~~~~~~i~~d~~g~ 129 (314)
T 1pjx_A 71 GIPAGCQCDRDANQLFVADM-RLGLLVVQTD-GT---------F---EEIAKKDSEG-------RRMQGCNDCAFDYEGN 129 (314)
T ss_dssp CCEEEEEECSSSSEEEEEET-TTEEEEEETT-SC---------E---EECCSBCTTS-------CBCBCCCEEEECTTSC
T ss_pred CCCceEEEecCCCcEEEEEC-CCCEEEEeCC-CC---------E---EEEEeccCCC-------ccccCCcCEEECCCCC
Confidence 45789999999 87666554 4478899986 32 1 111 110000 0012377899988763
Q ss_pred CceEEEeeCC---------------CeEEEEEccCCCccc---ccccEEEEEEe----cCCCCEEEEEeCCCeEEEEecc
Q psy12356 82 QAHFLLSTND---------------QSFNIVDIKPTNMEE---LNEVITAAEFH----PIDCNLFVYSSSKGTIRLCDMR 139 (400)
Q Consensus 82 ~~~~l~ss~D---------------~tI~lWd~~~~~~~~---~~~~V~sv~f~----p~~~~~las~s~Dg~i~lWD~~ 139 (400)
.+++...+ +.|..+|.+ +++.. .......++|+ |++..++++...++.|.+||+.
T Consensus 130 --l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~ 206 (314)
T 1pjx_A 130 --LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK 206 (314)
T ss_dssp --EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred --EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence 44444444 456666654 44321 12345789999 9864455666678999999987
Q ss_pred -cccccccccceeccCcc---cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCC
Q psy12356 140 -AAALCDRHSKCLIEGTN---CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPT 215 (400)
Q Consensus 140 -~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~ 215 (400)
.+.+... ........ ....++ ...+++...++...++.|..||..++... ..+
T Consensus 207 ~~g~~~~~--~~~~~~~~~~~~~p~~i----------~~d~~G~l~v~~~~~~~i~~~d~~~g~~~----~~~------- 263 (314)
T 1pjx_A 207 GPAKIENK--KVWGHIPGTHEGGADGM----------DFDEDNNLLVANWGSSHIEVFGPDGGQPK----MRI------- 263 (314)
T ss_dssp ETTEEEEE--EEEEECCCCSSCEEEEE----------EEBTTCCEEEEEETTTEEEEECTTCBSCS----EEE-------
T ss_pred CCCccccc--eEEEECCCCCCCCCCce----------EECCCCCEEEEEcCCCEEEEEcCCCCcEe----EEE-------
Confidence 3321100 00111100 011111 12244444444335788999998754321 111
Q ss_pred CcccccccccCeEEEEECCCCcEE-EEe-cCCeEEEEeCCCCC
Q psy12356 216 NKSFFSEIISSISDVKISNSGRYM-ISR-DYLCVKVWDLHMES 256 (400)
Q Consensus 216 ~~~~~~~h~~~V~~v~fSpdg~~l-as~-~D~tIklWD~~~~~ 256 (400)
..+...+.+++|+|+|++| +++ .++.|..||+...+
T Consensus 264 -----~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~g 301 (314)
T 1pjx_A 264 -----RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp -----ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSCB
T ss_pred -----eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCCC
Confidence 1223568899999999955 454 46799999988654
No 204
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.67 E-value=6.4e-07 Score=85.43 Aligned_cols=118 Identities=8% Similarity=0.065 Sum_probs=74.5
Q ss_pred eEEEEEECCCCCeEEEec--CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 5 MREASQRFSDGELLATGD--KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
.+..|+++|||+++++.. .++.++||.++++ . +..|...... ...+-..+..|++.|++
T Consensus 18 ~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g---------~---~~~~p~~~~~-----~~~~~~~p~gv~~d~~g-- 78 (343)
T 2qe8_A 18 APGNITLTPDGRLFLSLHQFYQPEMQVAELTQD---------G---LIPFPPQSGN-----AIITFDTVLGIKSDGNG-- 78 (343)
T ss_dssp CEEEEEECTTSCEEEEECGGGCCSCSEEEEETT---------E---EEESCCCCSS-----CCCCCSCEEEEEECSSS--
T ss_pred CcceEEECCCCCEEEEeCCCCCCceEEEEECCC---------C---eecCCCcccC-----cccceeEeeEEEEcCCC--
Confidence 578999999999999864 2343666766422 1 1122111000 00011347889998875
Q ss_pred ceEEEe-eC-----CCeEEEEEccCCCc-ccc---------cccEEEEEEecCCCCEEEEEe---CCCeEEEEeccccc
Q psy12356 83 AHFLLS-TN-----DQSFNIVDIKPTNM-EEL---------NEVITAAEFHPIDCNLFVYSS---SKGTIRLCDMRAAA 142 (400)
Q Consensus 83 ~~~l~s-s~-----D~tI~lWd~~~~~~-~~~---------~~~V~sv~f~p~~~~~las~s---~Dg~i~lWD~~~~~ 142 (400)
++.++ .. +..|.+||++++++ +.. ...++.++++|+++..+++.+ .++.|.+||+.+++
T Consensus 79 -~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 79 -IVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp -EEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred -cEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 44443 22 57899999988762 111 124688999987666667766 68899999998774
No 205
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.63 E-value=4.9e-06 Score=77.66 Aligned_cols=91 Identities=10% Similarity=0.046 Sum_probs=57.9
Q ss_pred EEEEEECCCCC-eEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFSDGE-LLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fspdG~-~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.....|+|+|+ ++++...++.|..|+... . ...+..+. ..++.+++.|++ +
T Consensus 47 ~egp~~~~~g~~l~~~d~~~~~i~~~~~~g----------~---~~~~~~~~------------~~~~gl~~d~dG---~ 98 (305)
T 3dr2_A 47 SEGPAWWEAQRTLVWSDLVGRRVLGWREDG----------T---VDVLLDAT------------AFTNGNAVDAQQ---R 98 (305)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTS----------C---EEEEEESC------------SCEEEEEECTTS---C
T ss_pred ccCCeEeCCCCEEEEEECCCCEEEEEeCCC----------C---EEEEeCCC------------CccceeeECCCC---C
Confidence 45788999998 677777889999998742 1 12333332 237788998876 4
Q ss_pred EEEe-eCCCeEEEEEccCCCccccc--------ccEEEEEEecCCCCEEEE
Q psy12356 85 FLLS-TNDQSFNIVDIKPTNMEELN--------EVITAAEFHPIDCNLFVY 126 (400)
Q Consensus 85 ~l~s-s~D~tI~lWd~~~~~~~~~~--------~~V~sv~f~p~~~~~las 126 (400)
++++ ..++.|.+||.+ +++..+. ..+++++++|+| +++++
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG-~l~~t 147 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDG-AIWFT 147 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTS-CEEEE
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCC-CEEEe
Confidence 5555 456789999976 5532111 124567777764 45554
No 206
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=98.63 E-value=2.8e-06 Score=80.47 Aligned_cols=202 Identities=8% Similarity=0.036 Sum_probs=117.6
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+..++|+|||++.++...++.|.+||..+. ++...+...... +.......+++ .. ++
T Consensus 85 ~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~-----------~~~~~i~~g~~~-------~~~~~p~~i~~-~~---~~ 142 (328)
T 3dsm_A 85 SPRYIHFLSDEKAYVTQIWDYRIFIINPKTY-----------EITGYIECPDMD-------MESGSTEQMVQ-YG---KY 142 (328)
T ss_dssp SEEEEEEEETTEEEEEEBSCSEEEEEETTTT-----------EEEEEEECTTCC-------TTTCBCCCEEE-ET---TE
T ss_pred CCcEEEEeCCCeEEEEECCCCeEEEEECCCC-----------eEEEEEEcCCcc-------ccCCCcceEEE-EC---CE
Confidence 4678999999976666658999999998753 223333321100 00012445666 32 25
Q ss_pred EEEee--CCCeEEEEEccCCCcc-c--ccccEEEEEEecCCCCEEEEEeCC----------CeEEEEecccccccccccc
Q psy12356 85 FLLST--NDQSFNIVDIKPTNME-E--LNEVITAAEFHPIDCNLFVYSSSK----------GTIRLCDMRAAALCDRHSK 149 (400)
Q Consensus 85 ~l~ss--~D~tI~lWd~~~~~~~-~--~~~~V~sv~f~p~~~~~las~s~D----------g~i~lWD~~~~~~~~~~~~ 149 (400)
+.++. .+++|.++|+++++.. . .......++++|++ ++++++..+ +.|.++|..++++...
T Consensus 143 lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG-~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~--- 218 (328)
T 3dsm_A 143 VYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYN-KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQ--- 218 (328)
T ss_dssp EEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTS-EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEE---
T ss_pred EEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCC-CEEEEECCCccCCccccCCceEEEEECCCCeEEEE---
Confidence 55554 4899999999887632 1 12234578899975 666666554 7899999988754321
Q ss_pred eeccCcccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeE
Q psy12356 150 CLIEGTNCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSIS 228 (400)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 228 (400)
+....+....++.+ .+++ ....+. +.|.+||+.+++.... . + +........
T Consensus 219 -~~~~~g~~p~~la~----------~~d~~~lyv~~---~~v~~~d~~t~~~~~~--~-~-----------~~~~~~~p~ 270 (328)
T 3dsm_A 219 -FKFKLGDWPSEVQL----------NGTRDTLYWIN---NDIWRMPVEADRVPVR--P-F-----------LEFRDTKYY 270 (328)
T ss_dssp -EECCTTCCCEEEEE----------CTTSCEEEEES---SSEEEEETTCSSCCSS--C-S-----------BCCCSSCEE
T ss_pred -EecCCCCCceeEEE----------ecCCCEEEEEc---cEEEEEECCCCceeee--e-e-----------ecCCCCceE
Confidence 10000111222333 2333 333332 2888999876543210 0 0 111124578
Q ss_pred EEEECC-CCcEEEEe-----cCCeEEEEeCCCCCCceeee
Q psy12356 229 DVKISN-SGRYMISR-----DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 229 ~v~fSp-dg~~las~-----~D~tIklWD~~~~~~~l~~~ 262 (400)
.++++| ++++.++. .+++|.+||.. + +.++++
T Consensus 271 gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g-~~~~~i 308 (328)
T 3dsm_A 271 GLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-G-KLIDEF 308 (328)
T ss_dssp EEEECTTTCCEEEEECTTSSSEEEEEEECTT-C-CEEEEE
T ss_pred EEEEcCCCCeEEEEcccccccCCEEEEECCC-C-CEEEEE
Confidence 899999 56666654 36899999998 4 456665
No 207
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=98.61 E-value=2.6e-06 Score=78.89 Aligned_cols=54 Identities=4% Similarity=-0.014 Sum_probs=40.0
Q ss_pred eEEEeeCCCeEEEEEccCCCcc----ccc-ccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNME----ELN-EVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~----~~~-~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+++++.|+.|++||.++|+.. ... ..+.++.+.|+| ++++ +.++.|..||. ++
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG-~ilv--s~~~~V~~~d~-~G 65 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAG-EILF--SYSKGAKMITR-DG 65 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTS-CEEE--ECBSEEEEECT-TS
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCC-CEEE--eCCCCEEEECC-CC
Confidence 5666788999999999888731 112 257888999985 6777 45778999997 55
No 208
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.61 E-value=1.1e-05 Score=74.93 Aligned_cols=199 Identities=10% Similarity=0.068 Sum_probs=114.0
Q ss_pred EEEEECCC-CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 7 EASQRFSD-GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 7 ~~v~fspd-G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
-+..|+|+ +.++++...+++|+.||..++. ...+. +. ..+.++++.|++ .+
T Consensus 16 Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~------------~~~~~-~~------------~~~~~i~~~~dG---~l 67 (297)
T 3g4e_A 16 ESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQ------------VQRVT-MD------------APVSSVALRQSG---GY 67 (297)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTCC------------EEEEE-CS------------SCEEEEEEBTTS---SE
T ss_pred cCCeEECCCCEEEEEECCCCEEEEEECCCCc------------EEEEe-CC------------CceEEEEECCCC---CE
Confidence 46789995 5567777778999999987532 11221 11 247889998876 45
Q ss_pred EEeeCCCeEEEEEccCCCcccc--------cccEEEEEEecCCCCEEEEEeCC---------CeEEEEeccccccccccc
Q psy12356 86 LLSTNDQSFNIVDIKPTNMEEL--------NEVITAAEFHPIDCNLFVYSSSK---------GTIRLCDMRAAALCDRHS 148 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~~~~~--------~~~V~sv~f~p~~~~~las~s~D---------g~i~lWD~~~~~~~~~~~ 148 (400)
+++. +..|.+||.+++++..+ ...++.++++|+| +++++...+ ..-+||.+........
T Consensus 68 ~v~~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG-~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-- 143 (297)
T 3g4e_A 68 VATI-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAG-RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-- 143 (297)
T ss_dssp EEEE-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTS-CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE--
T ss_pred EEEE-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCC-CEEEecCCcccccccccCCCcEEEEEECCCCEEE--
Confidence 5554 56899999987764221 1347899999986 566655322 3345665543211100
Q ss_pred ceeccCcccceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecc--cccccCcccccccCCCCCCCccccccccc
Q psy12356 149 KCLIEGTNCNCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMR--AAALCDRHSKFFEEPEDPTNKSFFSEIIS 225 (400)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 225 (400)
+... .....++ ...+++. ...+.+.++.|..||+. ++.... .+.+.. +..+..
T Consensus 144 --~~~~-~~~pngi----------~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~--~~~~~~---------~~~~~~ 199 (297)
T 3g4e_A 144 --YFDQ-VDISNGL----------DWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISN--RRSVYK---------LEKEEQ 199 (297)
T ss_dssp --EEEE-ESBEEEE----------EECTTSCEEEEEEGGGTEEEEEEECTTTCCEEE--EEEEEE---------CCGGGC
T ss_pred --Eeec-cccccce----------EEcCCCCEEEEecCCCCcEEEEeccCCCCcccC--cEEEEE---------CCCCCC
Confidence 0000 0011122 2234442 33444567889999874 332110 011110 112224
Q ss_pred CeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeee
Q psy12356 226 SISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 226 ~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~ 262 (400)
....++++++|++.++. ..+.|..||..++. .+..+
T Consensus 200 ~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~-~~~~i 236 (297)
T 3g4e_A 200 IPDGMCIDAEGKLWVACYNGGRVIRLDPVTGK-RLQTV 236 (297)
T ss_dssp EEEEEEEBTTSCEEEEEETTTEEEEECTTTCC-EEEEE
T ss_pred CCCeeEECCCCCEEEEEcCCCEEEEEcCCCce-EEEEE
Confidence 57789999999987765 56789999988653 34433
No 209
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=98.54 E-value=4.3e-06 Score=77.81 Aligned_cols=185 Identities=7% Similarity=0.017 Sum_probs=103.6
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..+.+++|+|||+++++. ++.|.+||..+++ .+ .+...... .....++.+++.|++
T Consensus 54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~---------~~---~~~~~~~~-------~~~~~~~di~~d~dG--- 109 (297)
T 3g4e_A 54 APVSSVALRQSGGYVATI--GTKFCALNWKEQS---------AV---VLATVDND-------KKNNRFNDGKVDPAG--- 109 (297)
T ss_dssp SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTE---------EE---EEEECCTT-------CSSEEEEEEEECTTS---
T ss_pred CceEEEEECCCCCEEEEE--CCeEEEEECCCCc---------EE---EEEecCCC-------CCCCCCCCEEECCCC---
Confidence 357899999999977654 5689999987532 11 22211100 001347889998876
Q ss_pred eEEEee-C---------CCeEEEEEccC-CCcccc---cccEEEEEEecCCCCEEEEEeCCCeEEEEecc--cccccccc
Q psy12356 84 HFLLST-N---------DQSFNIVDIKP-TNMEEL---NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMR--AAALCDRH 147 (400)
Q Consensus 84 ~~l~ss-~---------D~tI~lWd~~~-~~~~~~---~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~--~~~~~~~~ 147 (400)
++.++. . ....+||.++. +..... ....+.++|+|++..++++.+.++.|..||+. ++.+...
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~- 188 (297)
T 3g4e_A 110 RYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNR- 188 (297)
T ss_dssp CEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEE-
T ss_pred CEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCc-
Confidence 344432 2 23457777754 332211 23457899999875566777778999999973 4422110
Q ss_pred cceeccCcc--cceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccccccc
Q psy12356 148 SKCLIEGTN--CNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIIS 225 (400)
Q Consensus 148 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 225 (400)
..+..... ... +++...+++...++...++.|..||..+++.. ..+. .+..
T Consensus 189 -~~~~~~~~~~~~p----------~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~----~~i~------------~p~~ 241 (297)
T 3g4e_A 189 -RSVYKLEKEEQIP----------DGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL----QTVK------------LPVD 241 (297)
T ss_dssp -EEEEECCGGGCEE----------EEEEEBTTSCEEEEEETTTEEEEECTTTCCEE----EEEE------------CSSS
T ss_pred -EEEEECCCCCCCC----------CeeEECCCCCEEEEEcCCCEEEEEcCCCceEE----EEEE------------CCCC
Confidence 01111100 011 11111234444444345678999998765432 1111 1224
Q ss_pred CeEEEEEC-CCCcEEE
Q psy12356 226 SISDVKIS-NSGRYMI 240 (400)
Q Consensus 226 ~V~~v~fS-pdg~~la 240 (400)
.+.+++|+ ||++.|.
T Consensus 242 ~~t~~~f~g~d~~~L~ 257 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMY 257 (297)
T ss_dssp BEEEEEEESGGGCEEE
T ss_pred CceEEEEeCCCCCEEE
Confidence 68999998 8988664
No 210
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=98.54 E-value=1e-05 Score=78.36 Aligned_cols=114 Identities=11% Similarity=0.161 Sum_probs=70.4
Q ss_pred EEEECCCCCeEEEec----------CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 8 ASQRFSDGELLATGD----------KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 8 ~v~fspdG~~Las~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
.+++||||++|..++ .++.|.+||..+.+ +.+++.--... . .........++|+
T Consensus 82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~-----------v~~~I~v~~g~-r----~~~g~~P~~~a~s 145 (386)
T 3sjl_D 82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLL-----------PTADIELPDAP-R----FLVGTYPWMTSLT 145 (386)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-----------EEEEEEETTCC-C----CCBSCCGGGEEEC
T ss_pred cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCe-----------EEEEEECCCcc-c----cccCCCCceEEEc
Confidence 489999999887765 36789999998643 33333210000 0 0000013458899
Q ss_pred eccCCceEEEee--CCCeEEEEEccCCCcc-cccccEEEEEEecCCCCEEEEEeCCCeEEEEeccc
Q psy12356 78 RRKNQAHFLLST--NDQSFNIVDIKPTNME-ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 78 p~~~~~~~l~ss--~D~tI~lWd~~~~~~~-~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~ 140 (400)
||+. .+.++. .+++|.++|+++++.. .+.-. .+....|.+...|++.+.||.+-+.++.+
T Consensus 146 pDGk--~lyVan~~~~~~VsVID~~t~~vv~tI~v~-g~~~~~P~g~~~~~~~~~DG~~~~v~~~~ 208 (386)
T 3sjl_D 146 PDGK--TLLFYQFSPAPAVGVVDLEGKAFKRMLDVP-DCYHIFPTAPDTFFMHCRDGSLAKVAFGT 208 (386)
T ss_dssp TTSS--EEEEEECSSSCEEEEEETTTTEEEEEEECC-SEEEEEEEETTEEEEEETTSCEEEEECCS
T ss_pred CCCC--EEEEEEcCCCCeEEEEECCCCcEEEEEECC-CcceeecCCCceeEEECCCCCEEEEECCC
Confidence 9874 455554 3789999999988732 11100 01123355566788888999999999876
No 211
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=98.52 E-value=3.6e-05 Score=70.37 Aligned_cols=191 Identities=8% Similarity=0.007 Sum_probs=117.8
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+.+++++|+|++.++...++.|..||... .. ..+..... ...+..+++.|++. .
T Consensus 58 ~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g----------~~---~~~~~~~~----------~~~~~~i~~~~~g~--l 112 (299)
T 2z2n_A 58 KVMCLTISSDGEVWFTENAANKIGRITKKG----------II---KEYTLPNP----------DSAPYGITEGPNGD--I 112 (299)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTS----------CE---EEEECSST----------TCCEEEEEECTTSC--E
T ss_pred ceeeEEECCCCCEEEeCCCCCeEEEECCCC----------cE---EEEeCCCc----------CCCceeeEECCCCC--E
Confidence 478999999999998887789999999752 11 11211100 12377888887652 3
Q ss_pred EEEeeCCCeEEEEEccCCCccc-----ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEE-----LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~-----~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+++...++.|..||. ++.... ....+.+++++|++ +++++...++.|..||. ++..... .. .......
T Consensus 113 ~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~~---~~-~~~~~~~ 185 (299)
T 2z2n_A 113 WFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITEF---KI-PTPASGP 185 (299)
T ss_dssp EEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEEE---EC-SSTTCCE
T ss_pred EEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEEe---eC-CCCCCcc
Confidence 444456789999998 554321 22457899999975 77777777889999998 5532110 00 0000111
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
..+.+ .+++....+...++.|..||. ++.. ..+..+ .+...+.+++++|+|++.
T Consensus 186 ~~i~~----------~~~g~l~v~~~~~~~i~~~~~-~g~~-----~~~~~~----------~~~~~~~~i~~~~~g~l~ 239 (299)
T 2z2n_A 186 VGITK----------GNDDALWFVEIIGNKIGRITT-SGEI-----TEFKIP----------TPNARPHAITAGAGIDLW 239 (299)
T ss_dssp EEEEE----------CTTSSEEEEETTTTEEEEECT-TCCE-----EEEECS----------STTCCEEEEEECSTTCEE
T ss_pred eeEEE----------CCCCCEEEEccCCceEEEECC-CCcE-----EEEECC----------CCCCCceeEEECCCCCEE
Confidence 12222 233444444445778999987 4332 111111 123568899999999987
Q ss_pred EEe-cCCeEEEEeCC
Q psy12356 240 ISR-DYLCVKVWDLH 253 (400)
Q Consensus 240 as~-~D~tIklWD~~ 253 (400)
++. .++.|..||..
T Consensus 240 v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 240 FTEWGANKIGRLTSN 254 (299)
T ss_dssp EEETTTTEEEEEETT
T ss_pred EeccCCceEEEECCC
Confidence 775 57899999983
No 212
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.50 E-value=5e-06 Score=81.50 Aligned_cols=215 Identities=7% Similarity=0.037 Sum_probs=116.8
Q ss_pred EEECCCCCeEEEecCCC--eEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEE
Q psy12356 9 SQRFSDGELLATGDKGG--RVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFL 86 (400)
Q Consensus 9 v~fspdG~~Las~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l 86 (400)
++|+|+|++|..++.++ .|.+|+..+.. . .+.+....+. ....+..++++|+. +.+.
T Consensus 176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~----------~-~~~~g~~~~~--------~~~~p~~iav~p~~--g~ly 234 (409)
T 3hrp_A 176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGW----------A-PTRIGQLGST--------FSGKIGAVALDETE--EWLY 234 (409)
T ss_dssp CEECTTSSEEEEEBSSTTCEEEEEEGGGTT----------C-EEEEEECCTT--------SCSCCCBCEECTTS--SEEE
T ss_pred eeEecCCCcEEEEecCCCceEEEEEcCCCc----------e-eEEeeeccch--------hcCCcEEEEEeCCC--CeEE
Confidence 88999999998888766 78888876431 1 1112000000 01236678898843 2566
Q ss_pred EeeCCCeEEEEEccCCCcccc--------ccc--EEEEEEecCCCCEEEEEeCCCeEEEEeccccccc-ccccceeccCc
Q psy12356 87 LSTNDQSFNIVDIKPTNMEEL--------NEV--ITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALC-DRHSKCLIEGT 155 (400)
Q Consensus 87 ~ss~D~tI~lWd~~~~~~~~~--------~~~--V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~-~~~~~~~~~~~ 155 (400)
++..++.|+.||.+++..... ... .+.++|+|+++.++++-..++.|+.||....... ..... .....
T Consensus 235 v~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~-~~g~~ 313 (409)
T 3hrp_A 235 FVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSAT-QKTVQ 313 (409)
T ss_dssp EECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTT-CCSCB
T ss_pred EEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCC-CCCcC
Confidence 665688999999987653211 111 1389999976678888888999999997654110 00000 00000
Q ss_pred ccceeceeccCchhhhhhcccCcceeecCC-CCCeEEEeecccccccCcccccccCC-CC-CCC-cccccccccCeEEEE
Q psy12356 156 NCNCQGLIVPESKREERQSSQNRREKEDNR-RKPAIRLCDMRAAALCDRHSKFFEEP-ED-PTN-KSFFSEIISSISDVK 231 (400)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~dg~i~lWD~~~~~~~~~~~~~~~~~-~~-~~~-~~~~~~h~~~V~~v~ 231 (400)
........+. ...++...+++....+.+ .++.|+.||+..+.. ..+.+. .. ... .......-.....|+
T Consensus 314 dg~~~~~~~~--~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v-----~~~~g~~~~~g~~~g~~~~~~~~~P~gia 386 (409)
T 3hrp_A 314 DGLREEALFA--QPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYV-----STVAGQVDVASQIDGTPLEATFNYPYDIC 386 (409)
T ss_dssp CEEGGGCBCS--SEEEEEECTTCCEEEEETTTTCEEEEEETTTTEE-----EEEEECTTCBSCCCBSTTTCCBSSEEEEE
T ss_pred CCcccccEeC--CCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEE-----EEEeCCCCCCCcCCCChhceEeCCceEEE
Confidence 0000000000 001122234555555566 788999999755432 111110 00 000 000001124578999
Q ss_pred ECCCCcEEEE-ecCCeEEEEeC
Q psy12356 232 ISNSGRYMIS-RDYLCVKVWDL 252 (400)
Q Consensus 232 fSpdg~~las-~~D~tIklWD~ 252 (400)
++|+|+++++ ...+.||.+++
T Consensus 387 vd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 387 YDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECSSSEEEEEESTTCEEEEEEE
T ss_pred EcCCCCEEEEECCCCeEEEEEe
Confidence 9999988887 45688887765
No 213
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.48 E-value=4.8e-05 Score=71.79 Aligned_cols=191 Identities=8% Similarity=0.032 Sum_probs=109.3
Q ss_pred EEEEEECCCC-CeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFSDG-ELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fspdG-~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.....|+|++ .++++...++.|.+||..++. ...+. +. ..+.++.|.|++ .
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~------------~~~~~-~~------------~~v~~i~~~~dg---~ 102 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR------------KTVHA-LP------------FMGSALAKISDS---K 102 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE------------EEEEE-CS------------SCEEEEEEEETT---E
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc------------EEEEE-CC------------CcceEEEEeCCC---e
Confidence 3578899975 566677678999999987531 11221 11 247889999986 5
Q ss_pred EEEeeCCCeEEEEEccCCCcccc--------cccEEEEEEecCCCCEEEEEeCC----CeEEEEecccccccccccceec
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEEL--------NEVITAAEFHPIDCNLFVYSSSK----GTIRLCDMRAAALCDRHSKCLI 152 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~~--------~~~V~sv~f~p~~~~~las~s~D----g~i~lWD~~~~~~~~~~~~~~~ 152 (400)
+++++.+ .|.+||.+++++..+ ...+++++++|++ +++++...+ +...||.+.++.... +.
T Consensus 103 l~v~~~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~v~~~~~~~~~~~~~l~~~~~g~~~~-----~~ 175 (326)
T 2ghs_A 103 QLIASDD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSG-ALWIGTMGRKAETGAGSIYHVAKGKVTK-----LF 175 (326)
T ss_dssp EEEEETT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTS-CEEEEEEETTCCTTCEEEEEEETTEEEE-----EE
T ss_pred EEEEECC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCC-CEEEEeCCCcCCCCceEEEEEeCCcEEE-----ee
Confidence 6665544 499999988774211 1358899999986 566655422 234555544332110 00
Q ss_pred cCcccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecc--cc-cccCcccccccCCCCCCCcccccccccCeE
Q psy12356 153 EGTNCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMR--AA-ALCDRHSKFFEEPEDPTNKSFFSEIISSIS 228 (400)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~ 228 (400)
.. .....++ ...+++ ......+.++.|.+||+. ++ .... .+.+.. +........
T Consensus 176 ~~-~~~~~~i----------~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~--~~~~~~---------~~~~~~~p~ 233 (326)
T 2ghs_A 176 AD-ISIPNSI----------CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGK--AEVFID---------STGIKGGMD 233 (326)
T ss_dssp EE-ESSEEEE----------EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSC--CEEEEE---------CTTSSSEEE
T ss_pred CC-CcccCCe----------EEcCCCCEEEEEECCCCEEEEEEcccccCCcccC--ceEEEE---------CCCCCCCCC
Confidence 00 0001112 223444 233444557899999986 33 2111 011110 011123467
Q ss_pred EEEECCCCcEEEEe-cCCeEEEEeCC
Q psy12356 229 DVKISNSGRYMISR-DYLCVKVWDLH 253 (400)
Q Consensus 229 ~v~fSpdg~~las~-~D~tIklWD~~ 253 (400)
.++++++|++.++. .++.|.+||..
T Consensus 234 gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 234 GSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEECTTSCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCEEEEEeCCCEEEEECCC
Confidence 89999999987765 56789999874
No 214
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.46 E-value=1.3e-05 Score=76.18 Aligned_cols=201 Identities=11% Similarity=0.097 Sum_probs=113.0
Q ss_pred eeEEEEEeccCCceEEEee--CCCeEEEEEccCCCcc----------cccccEEEEEEecCCCCEEEEEeC-----CCeE
Q psy12356 71 INKIRWLRRKNQAHFLLST--NDQSFNIVDIKPTNME----------ELNEVITAAEFHPIDCNLFVYSSS-----KGTI 133 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~ss--~D~tI~lWd~~~~~~~----------~~~~~V~sv~f~p~~~~~las~s~-----Dg~i 133 (400)
+..|+++|++. .+++.. .++.++||.++++.+. .+...+.+++|+|++ ++++.-.. ++.|
T Consensus 19 p~~va~~~~g~--~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~~~~~~~~i 95 (343)
T 2qe8_A 19 PGNITLTPDGR--LFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGNQSKSVPKL 95 (343)
T ss_dssp EEEEEECTTSC--EEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHHHHTSCCEE
T ss_pred cceEEECCCCC--EEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCCCcCCCCeE
Confidence 67899998763 444432 2343777877654432 112457899999974 56665433 5678
Q ss_pred EEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCC
Q psy12356 134 RLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPED 213 (400)
Q Consensus 134 ~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~ 213 (400)
.+||+.++++. +.+++....
T Consensus 96 ~~~d~~tg~~~----------------------------------------------~~~~~~~~~-------------- 115 (343)
T 2qe8_A 96 VAWDTLNNQLS----------------------------------------------RVIYLPPPI-------------- 115 (343)
T ss_dssp EEEETTTTEEE----------------------------------------------EEEECCTTT--------------
T ss_pred EEEECCCCeEE----------------------------------------------EEEECChhh--------------
Confidence 88888766321 111110000
Q ss_pred CCCcccccccccCeEEEEECCC-CcEEEE-e---cCCeEEEEeCCCCCCceeeecCCCc-CCC-------Cccc-CCCCC
Q psy12356 214 PTNKSFFSEIISSISDVKISNS-GRYMIS-R---DYLCVKVWDLHMESRPVETYPTHTK-EEN-------GQLR-DPSNI 279 (400)
Q Consensus 214 ~~~~~~~~~h~~~V~~v~fSpd-g~~las-~---~D~tIklWD~~~~~~~l~~~~~h~~-~~~-------g~~~-~~~~~ 279 (400)
..+......++++|+ |...++ . .++.|.+||..++. ..+.+.+|.. .++ |+.+ ..+.+
T Consensus 116 -------~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~-~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 187 (343)
T 2qe8_A 116 -------TLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-AARVLQGYPGIAPEDIDLVIDGVPVQIGQPD 187 (343)
T ss_dssp -------SCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC-EEEECTTCTTTSCCSCCCEETTEECBEECTT
T ss_pred -------cccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC-EEEEecCCCcccccccceeECCEEEEeccCC
Confidence 011234578999986 444455 3 56899999998753 3444545421 111 1100 00011
Q ss_pred ceeecCcccccceeeccCccceeccccccceEEEEEcCCCcEEeecc---cchh---------------------h-ccc
Q psy12356 280 TALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASP---RGIF---------------------A-DAH 334 (400)
Q Consensus 280 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg~~~~~~~---~~~~---------------------~-~gh 334 (400)
+.++.| ....+.++++|||+.|.... .+++ . .|+
T Consensus 188 g~~~~~---------------------~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 246 (343)
T 2qe8_A 188 GTVIRP---------------------HLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSE 246 (343)
T ss_dssp SCEECC---------------------CCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEE
T ss_pred Cceece---------------------ecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEeccc
Confidence 111111 12357899999997553211 0110 0 134
Q ss_pred ccceeEEEEccCCCEEEEe-cCCeEEEEeC
Q psy12356 335 TYHISSTSVNSDQETYLSA-DDLRINLWHL 363 (400)
Q Consensus 335 ~~~V~~i~fspDg~~las~-~D~~i~lW~~ 363 (400)
......+++++||.++++. .++.|.+|+.
T Consensus 247 ~g~pdgia~d~~G~l~va~~~~~~V~~~d~ 276 (343)
T 2qe8_A 247 KPICDGISIDKDHNIYVGDLAHSAIGVITS 276 (343)
T ss_dssp CCSCSCEEECTTCCEEEEEGGGTEEEEEET
T ss_pred CCCCceEEECCCCCEEEEccCCCeEEEEEC
Confidence 4466789999999988886 6889999998
No 215
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=98.30 E-value=4.2e-05 Score=80.03 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=39.2
Q ss_pred eeeEEEEEeccCCceEEEe----e-CCCeEEEEEccCCCcc-ccccc--EEEEEEecCCCCEEEEEeCCC
Q psy12356 70 KINKIRWLRRKNQAHFLLS----T-NDQSFNIVDIKPTNME-ELNEV--ITAAEFHPIDCNLFVYSSSKG 131 (400)
Q Consensus 70 ~V~~v~~sp~~~~~~~l~s----s-~D~tI~lWd~~~~~~~-~~~~~--V~sv~f~p~~~~~las~s~Dg 131 (400)
.+..++||||++ .++.+ + .+.+|++||+++|+.. ..... ..+++|+ |+ +.|++++.|.
T Consensus 130 ~l~~~~~SpDg~--~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg-~~l~y~~~~~ 195 (693)
T 3iuj_A 130 ALDQLSFSRDGR--ILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GN-EGFFYSSYDK 195 (693)
T ss_dssp EEEEEEECTTSS--EEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TT-TEEEEEESSC
T ss_pred EEEEEEECCCCC--EEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CC-CEEEEEEecC
Confidence 377889999984 55533 1 2368999999999842 22222 3578899 75 6778887764
No 216
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=98.28 E-value=5e-05 Score=71.66 Aligned_cols=112 Identities=11% Similarity=0.089 Sum_probs=68.0
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|.+++|+|||+++++. .+ .|.+||..+++ .+ .+...... .....++.+++.|++. .
T Consensus 91 ~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~---------~~---~~~~~~~~-------~~~~~~~~i~~d~~G~--l 147 (326)
T 2ghs_A 91 MGSALAKISDSKQLIAS-DD-GLFLRDTATGV---------LT---LHAELESD-------LPGNRSNDGRMHPSGA--L 147 (326)
T ss_dssp CEEEEEEEETTEEEEEE-TT-EEEEEETTTCC---------EE---EEECSSTT-------CTTEEEEEEEECTTSC--E
T ss_pred cceEEEEeCCCeEEEEE-CC-CEEEEECCCCc---------EE---EEeeCCCC-------CCCCCCCCEEECCCCC--E
Confidence 57889999999988865 33 49999986532 11 12111100 0013478899998763 3
Q ss_pred EEEeeCC----CeEEEEEccCCCcccc---cccEEEEEEecCCCCEEEEEeCCCeEEEEecc
Q psy12356 85 FLLSTND----QSFNIVDIKPTNMEEL---NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMR 139 (400)
Q Consensus 85 ~l~ss~D----~tI~lWd~~~~~~~~~---~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~ 139 (400)
+++...+ ....||.+++++.... ....++++|+|++..++++.+.++.|.+||+.
T Consensus 148 ~v~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~ 209 (326)
T 2ghs_A 148 WIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD 209 (326)
T ss_dssp EEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred EEEeCCCcCCCCceEEEEEeCCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcc
Confidence 3333221 3455665554443221 13467899999864455665668899999986
No 217
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.24 E-value=6.9e-05 Score=73.65 Aligned_cols=114 Identities=12% Similarity=0.225 Sum_probs=68.9
Q ss_pred EEEECCCCCeEEEec----------CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 8 ASQRFSDGELLATGD----------KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 8 ~v~fspdG~~Las~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
.++|||||++|..+. .++.|.++|..+.+ ..+++.--... ... .......++++
T Consensus 122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~-----------vv~~I~v~g~~-r~~----~g~~P~~~~~s 185 (426)
T 3c75_H 122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL-----------PIADIELPDAP-RFL----VGTYQWMNALT 185 (426)
T ss_dssp EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC-----------EEEEEEETTCC-CCC----BSCCGGGSEEC
T ss_pred ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc-----------EEEEEECCCcc-ccc----cCCCcceEEEc
Confidence 789999999888876 46789999987643 23333210000 000 00012347899
Q ss_pred eccCCceEEEee-C-CCeEEEEEccCCCcc-ccc-ccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 78 RRKNQAHFLLST-N-DQSFNIVDIKPTNME-ELN-EVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 78 p~~~~~~~l~ss-~-D~tI~lWd~~~~~~~-~~~-~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
||+. ++.++. . +++|.+.|+++++.. ... .. +....|++...+++.+.||.+-+.|..++
T Consensus 186 pDGk--~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g--~~~~~p~g~~~~v~~~~dG~~~~V~~~~~ 249 (426)
T 3c75_H 186 PDNK--NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD--CYHIFPASPTVFYMNCRDGSLARVDFADG 249 (426)
T ss_dssp TTSS--EEEEEECSSSCEEEEEETTTTEEEEEEECCS--EEEEEEEETTEEEEEETTSSEEEEECCTT
T ss_pred CCCC--EEEEEecCCCCeEEEEECCCCeEEEEEEcCC--ceeeccCCCcEEEEEcCCCCEEEEECCCC
Confidence 9874 555554 2 689999999887632 111 11 12345555567777788888888887554
No 218
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=98.20 E-value=0.00042 Score=63.11 Aligned_cols=192 Identities=7% Similarity=0.002 Sum_probs=115.0
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..+.+++++++|++.++...++.|..||.. +. . ..+..... ...+..+++.+++.
T Consensus 62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~---------~---~~~~~~~~----------~~~~~~i~~~~~g~-- 116 (300)
T 2qc5_A 62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG---------F---TEYPLPQP----------DSGPYGITEGLNGD-- 116 (300)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTT-SC---------E---EEEECSST----------TCCEEEEEECSTTC--
T ss_pred CcceeEEECCCCCEEEEecCCCeEEEECCC-CC---------e---EEecCCCC----------CCCCccceECCCCC--
Confidence 357889999999988887778999999976 21 1 11211100 02367888877652
Q ss_pred eEEEeeCCCeEEEEEccCCCccc-----ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEE-----LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~-----~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
.+++...++.|..+|.+ ++... ....+.+++++|++ +++++...++.|..+|. ++.... . ........
T Consensus 117 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~i~~~~~-~g~~~~-~---~~~~~~~~ 189 (300)
T 2qc5_A 117 IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDN-ALWFTENQNNSIGRITN-TGKLEE-Y---PLPTNAAA 189 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTS-SEEEEETTTTEEEEECT-TCCEEE-E---ECSSTTCC
T ss_pred EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCC-CEEEEecCCCeEEEECC-CCcEEE-e---eCCCCCCC
Confidence 34444457889999987 55321 12457899999975 67777777889999998 442211 0 00000011
Q ss_pred eeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcE
Q psy12356 159 CQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRY 238 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~ 238 (400)
...+.+ .+++....+....+.|..||. .+.. ..+..+ .+...+.+++++|+|++
T Consensus 190 ~~~i~~----------d~~g~l~v~~~~~~~i~~~~~-~g~~-----~~~~~~----------~~~~~~~~i~~d~~g~l 243 (300)
T 2qc5_A 190 PVGITS----------GNDGALWFVEIMGNKIGRITT-TGEI-----SEYDIP----------TPNARPHAITAGKNSEI 243 (300)
T ss_dssp EEEEEE----------CTTSSEEEEETTTTEEEEECT-TCCE-----EEEECS----------STTCCEEEEEECSTTCE
T ss_pred cceEEE----------CCCCCEEEEccCCCEEEEEcC-CCcE-----EEEECC----------CCCCCceEEEECCCCCE
Confidence 112222 133434444344667888887 2221 111111 12245789999999998
Q ss_pred EEEe-cCCeEEEEeCC
Q psy12356 239 MISR-DYLCVKVWDLH 253 (400)
Q Consensus 239 las~-~D~tIklWD~~ 253 (400)
.++. .++.|..+|..
T Consensus 244 ~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 244 WFTEWGANQIGRITND 259 (300)
T ss_dssp EEEETTTTEEEEECTT
T ss_pred EEeccCCCeEEEECCC
Confidence 7765 46889999873
No 219
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=98.11 E-value=0.00037 Score=64.71 Aligned_cols=115 Identities=10% Similarity=0.061 Sum_probs=69.6
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.++.++|+|||+++++...++.|.+|+.+ +. .. .+..+... .....++.+++.|++. .
T Consensus 87 ~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~---------~~---~~~~~~~~-------~~~~~~~~i~~d~dG~--l 144 (305)
T 3dr2_A 87 FTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ---------AH---LLVGRYAG-------KRLNSPNDLIVARDGA--I 144 (305)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTT-SC---------EE---EEECEETT-------EECSCCCCEEECTTSC--E
T ss_pred ccceeeECCCCCEEEEECCCCEEEEECCC-CC---------EE---EEEeccCC-------CccCCCCCEEECCCCC--E
Confidence 47889999999988877777899999975 21 11 12111100 0012367789988763 4
Q ss_pred EEE----eeC-------------CCeEEEEEccCCCcccc--cccEEEEEEecCCCCEEEEEeC-----CCeEEEEeccc
Q psy12356 85 FLL----STN-------------DQSFNIVDIKPTNMEEL--NEVITAAEFHPIDCNLFVYSSS-----KGTIRLCDMRA 140 (400)
Q Consensus 85 ~l~----ss~-------------D~tI~lWd~~~~~~~~~--~~~V~sv~f~p~~~~~las~s~-----Dg~i~lWD~~~ 140 (400)
+++ +.. .+.|..+|.+++++... ....+.++|+|++..++++.+. ++.|..||+..
T Consensus 145 ~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 145 WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred EEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 443 221 24566667666664322 2345789999986434444333 27899999876
Q ss_pred c
Q psy12356 141 A 141 (400)
Q Consensus 141 ~ 141 (400)
+
T Consensus 225 ~ 225 (305)
T 3dr2_A 225 G 225 (305)
T ss_dssp T
T ss_pred C
Confidence 5
No 220
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.05 E-value=0.00016 Score=69.72 Aligned_cols=112 Identities=10% Similarity=0.093 Sum_probs=68.2
Q ss_pred EEEECCCCCeEEEec----------CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 8 ASQRFSDGELLATGD----------KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 8 ~v~fspdG~~Las~s----------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
.+.|||||++|..+. .+++|.+||..+.+ +.+++...... ..+. ......++++
T Consensus 69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~-----------vv~~I~v~~~~-~~~~----g~~P~~ia~S 132 (368)
T 1mda_H 69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL-----------PIADIELPDAP-RFSV----GPRVHIIGNC 132 (368)
T ss_dssp EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC-----------EEEEEEETTSC-SCCB----SCCTTSEEEC
T ss_pred ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC-----------EEEEEECCCcc-cccc----CCCcceEEEc
Confidence 689999999999886 47899999998643 34444322000 0000 0013358899
Q ss_pred eccCCceEEEee-C-CCeEEE--EEccCCCcccccccEEEEEEecCCCCEEEEEeCCCeEEEEeccc
Q psy12356 78 RRKNQAHFLLST-N-DQSFNI--VDIKPTNMEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 78 p~~~~~~~l~ss-~-D~tI~l--Wd~~~~~~~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~ 140 (400)
||+. .++++. . +..+.+ +|+.+ .....-. .++.+.|++...+++.+.|+.+-+-|+.+
T Consensus 133 pDGk--~lyVan~~~~~~v~V~~iD~~t--v~~i~v~-~~~~~~p~g~~~~~~~~~dg~~~~vd~~~ 194 (368)
T 1mda_H 133 ASSA--CLLFFLFGSSAAAGLSVPGASD--DQLTKSA-SCFHIHPGAAATHYLGSCPASLAASDLAA 194 (368)
T ss_dssp TTSS--CEEEEECSSSCEEEEEETTTEE--EEEEECS-SCCCCEEEETTEEECCCCTTSCEEEECCS
T ss_pred CCCC--EEEEEccCCCCeEEEEEEchhh--ceEEECC-CceEEccCCCeEEEEEcCCCCEEEEECcc
Confidence 9874 455554 2 467888 99865 2111000 01123566666777778899888888876
No 221
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=98.02 E-value=0.00039 Score=67.06 Aligned_cols=201 Identities=9% Similarity=0.001 Sum_probs=108.4
Q ss_pred EEEEECCCCCeEEEecC--CCeEEEEEcCCCCccccCCCCcceeeee-eeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 7 EASQRFSDGELLATGDK--GGRVVIFQRDPLSKTSIPKRGEYNVYST-FQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 7 ~~v~fspdG~~Las~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..++|||||++|..+.. +++|.++| .+++ +.++ +..- .++.+.|+++ .
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~-----------~~~~~i~~~----------------~~~~~~~~~~-~ 178 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGS-----------SDDQLLSSP----------------TCYHIHPGAP-S 178 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCC-----------EEeEEcCCC----------------ceEEEEeCCC-c
Confidence 46899999999998874 57899999 7542 2333 2110 1244556653 2
Q ss_pred eEEEeeCCCeEEEEEccCCCcccc---------cc-cEEEEEEecCCCCEEEEEeCCCeEEEEecccccc--ccccccee
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEEL---------NE-VITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL--CDRHSKCL 151 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~~---------~~-~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~--~~~~~~~~ 151 (400)
.+++.+.|+.+.++|. +++.... .. ......|.++++.+ +..+..+.+.+.|+.++.. .... .+
T Consensus 179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~v~vid~~~~~~~v~~~~--~~ 254 (373)
T 2mad_H 179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISAAGATNKAPI--DA 254 (373)
T ss_pred eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEE-EEEcCCceEEEEeccCCcceEeeee--ee
Confidence 4556678999999999 6653210 01 12334667765443 4444678899999875521 1100 00
Q ss_pred ccCcccceeceeccCchhhhhhcccCc-ceeecCC---------CCCeEEEeecccccccCcccccccCCCCCCCccccc
Q psy12356 152 IEGTNCNCQGLIVPESKREERQSSQNR-REKEDNR---------RKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS 221 (400)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (400)
.+.... ...+.+.....+...+++ .+..... .++.|.+.|+.+.+.. +.+.
T Consensus 255 ~~~~~~---~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv----~~i~------------ 315 (373)
T 2mad_H 255 LSGGRK---ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS----SQIS------------ 315 (373)
T ss_pred cCCccc---ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE----EEEE------------
Confidence 000000 000000000001112222 1111110 2467888998876532 1111
Q ss_pred ccccCeEEEEECCCCc-EEEEe--cCCeEEEEeCCCCCCceee
Q psy12356 222 EIISSISDVKISNSGR-YMISR--DYLCVKVWDLHMESRPVET 261 (400)
Q Consensus 222 ~h~~~V~~v~fSpdg~-~las~--~D~tIklWD~~~~~~~l~~ 261 (400)
.......++|+|||+ +++++ .+++|.++|+.++. .+++
T Consensus 316 -~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~-vv~~ 356 (373)
T 2mad_H 316 -LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGD-QDQS 356 (373)
T ss_pred -CCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCC-EEee
Confidence 112467899999999 66654 47999999999864 4554
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.02 E-value=1.6e-06 Score=83.78 Aligned_cols=182 Identities=14% Similarity=0.089 Sum_probs=89.0
Q ss_pred CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCCCe
Q psy12356 14 DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQS 93 (400)
Q Consensus 14 dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~t 93 (400)
++.+|++++.||.|+.||..+++ .+-.+.. .. +.+..+.+++ ..+++++.|+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~-----------~~W~~~~-~~-------------~~s~p~~~~g--~~~v~~s~dg~ 60 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGS-----------IKWTLKE-DP-------------VLQVPTHVEE--PAFLPDPNDGS 60 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCC-----------EEEEEEC-CC-------------SCCCC-------CCEEECTTTCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCC-----------EEEEecC-CC-------------ceecceEcCC--CEEEEeCCCCE
Confidence 68899999999999999988653 1222222 11 2222233333 24556678999
Q ss_pred EEEEEccCCCcc-cc----cccEE-EEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceeceeccCc
Q psy12356 94 FNIVDIKPTNME-EL----NEVIT-AAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPES 167 (400)
Q Consensus 94 I~lWd~~~~~~~-~~----~~~V~-sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (400)
|+.||.++|+.. .+ ...+. +..+. .+ .++++++.|+.|..||.++|+..-.+....
T Consensus 61 l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~-~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~---------------- 122 (369)
T 2hz6_A 61 LYTLGSKNNEGLTKLPFTIPELVQASPCRS-SD-GILYMGKKQDIWYVIDLLTGEKQQTLSSAF---------------- 122 (369)
T ss_dssp EEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------------------------
T ss_pred EEEEECCCCceeeeeeccCccccccCceEe-cC-CEEEEEeCCCEEEEEECCCCcEEEEecCCC----------------
Confidence 999999887631 11 11111 11111 22 456778889999999999985432111000
Q ss_pred hhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC----CcEEEEec
Q psy12356 168 KREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS----GRYMISRD 243 (400)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd----g~~las~~ 243 (400)
.....+.+..+..++.|+.++.||.++++.. +.. .. ......+++++ +.+++++.
T Consensus 123 ---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~------W~~----------~~--~~~~~~~~~~~~~~~~~v~~~~~ 181 (369)
T 2hz6_A 123 ---ADSLSPSTSLLYLGRTEYTITMYDTKTRELR------WNA----------TY--FDYAASLPEDDVDYKMSHFVSNG 181 (369)
T ss_dssp -------------EEEEEEEEEEECCCSSSSSCC------CEE----------EE--EEECCBCCCCCTTCCCCEEEEET
T ss_pred ---cccccccCCEEEEEecCCEEEEEECCCCCEE------EeE----------ec--ccccCccccCCccccceEEEECC
Confidence 0011122222233346889999999887532 110 00 01122333343 56666778
Q ss_pred CCeEEEEeCCCCCCceeee
Q psy12356 244 YLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 244 D~tIklWD~~~~~~~l~~~ 262 (400)
|+.|+.||.+++. .+-++
T Consensus 182 dg~v~a~d~~tG~-~~W~~ 199 (369)
T 2hz6_A 182 DGLVVTVDSESGD-VLWIQ 199 (369)
T ss_dssp SCEEEEECTTTCC-EEEEE
T ss_pred CCEEEEEECCCCc-EEEEe
Confidence 8999999999874 34443
No 223
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=97.83 E-value=3.4e-05 Score=74.33 Aligned_cols=134 Identities=13% Similarity=0.092 Sum_probs=63.6
Q ss_pred ceEEEeeCCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+.+++++.|+.|+.||.++|+.. .. ..+.+..+.++ +.++++++.|+.|+.||..+++.........
T Consensus 10 ~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~-g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~-------- 79 (369)
T 2hz6_A 10 TLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVE-EPAFLPDPNDGSLYTLGSKNNEGLTKLPFTI-------- 79 (369)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEEEEC-CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCH--------
T ss_pred CEEEEEcCCCEEEEEECCCCCEEEEecC-CCceecceEcC-CCEEEEeCCCCEEEEEECCCCceeeeeeccC--------
Confidence 47788889999999999998731 11 33333344454 3567777899999999998884321110000
Q ss_pred eceeccCchhhhhhcc----cCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 160 QGLIVPESKREERQSS----QNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
...+... .++. +..++.|+.+..||.++++.. +.. ..+ . .+.++|+
T Consensus 80 ---------~~~~~~sp~~~~~~~-v~~g~~dg~v~a~D~~tG~~~------w~~----------~~~-~---~~~~~p~ 129 (369)
T 2hz6_A 80 ---------PELVQASPCRSSDGI-LYMGKKQDIWYVIDLLTGEKQ------QTL----------SSA-F---ADSLSPS 129 (369)
T ss_dssp ---------HHHHTTCSCC------CCCCEEEEEEEEECCC---------------------------------------
T ss_pred ---------ccccccCceEecCCE-EEEEeCCCEEEEEECCCCcEE------EEe----------cCC-C---ccccccc
Confidence 0000001 1121 223446889999999987642 110 011 1 2456777
Q ss_pred CcEEEE-ecCCeEEEEeCCCCC
Q psy12356 236 GRYMIS-RDYLCVKVWDLHMES 256 (400)
Q Consensus 236 g~~las-~~D~tIklWD~~~~~ 256 (400)
+..++. +.|+.|+.||.+++.
T Consensus 130 ~~~v~~~~~dg~v~a~d~~tG~ 151 (369)
T 2hz6_A 130 TSLLYLGRTEYTITMYDTKTRE 151 (369)
T ss_dssp ---EEEEEEEEEEECCCSSSSS
T ss_pred CCEEEEEecCCEEEEEECCCCC
Confidence 777664 568999999999864
No 224
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.79 E-value=0.0002 Score=72.61 Aligned_cols=29 Identities=10% Similarity=0.045 Sum_probs=23.9
Q ss_pred CeEEEEECCCCcEEEEe--cCCeEEEEeCCC
Q psy12356 226 SISDVKISNSGRYMISR--DYLCVKVWDLHM 254 (400)
Q Consensus 226 ~V~~v~fSpdg~~las~--~D~tIklWD~~~ 254 (400)
...++.|||||+++..+ .+.+|.++|+.+
T Consensus 278 ~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~ 308 (595)
T 1fwx_A 278 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTR 308 (595)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGG
T ss_pred CceEEEEcCCCCEEEEeCCCCCeEEEEECcc
Confidence 34579999999988754 478999999995
No 225
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=97.74 E-value=0.001 Score=64.26 Aligned_cols=190 Identities=12% Similarity=0.083 Sum_probs=108.4
Q ss_pred EEECCCCCeEEEecC-----CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 9 SQRFSDGELLATGDK-----GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 9 v~fspdG~~Las~s~-----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
+...|||+++-.... +++|.+.|..+. +++.++..-. .. .++++||+.
T Consensus 38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~-----------~v~~~I~vG~-------------~P-~va~spDG~-- 90 (386)
T 3sjl_D 38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG-----------RVIGMIDGGF-------------LP-NPVVADDGS-- 90 (386)
T ss_dssp CCCCCCTTEEEEEECGGGCSSEEEEEEETTTT-----------EEEEEEEECS-------------SC-EEEECTTSS--
T ss_pred eccCCCCCEEEEEcCcccCCCCEEEEEECCCC-----------eEEEEEECCC-------------CC-cEEECCCCC--
Confidence 346799998887765 689999998753 3444443211 12 389999874
Q ss_pred eEEEee----------CCCeEEEEEccCCCcc-cc--c--------ccEEEEEEecCCCCEEEEEeC-CCeEEEEecccc
Q psy12356 84 HFLLST----------NDQSFNIVDIKPTNME-EL--N--------EVITAAEFHPIDCNLFVYSSS-KGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss----------~D~tI~lWd~~~~~~~-~~--~--------~~V~sv~f~p~~~~~las~s~-Dg~i~lWD~~~~ 141 (400)
.+.++. .+++|.+||..+++.. .. . ..-..++|+|||..++++... +++|.++|+.++
T Consensus 91 ~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~ 170 (386)
T 3sjl_D 91 FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK 170 (386)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT
T ss_pred EEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC
Confidence 444443 3678999999887731 11 0 112358999997555555443 789999999998
Q ss_pred cccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeeccc-ccccCcccccccCCCCCCCcccc
Q psy12356 142 ALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRA-AALCDRHSKFFEEPEDPTNKSFF 220 (400)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~-~~~~~~~~~~~~~~~~~~~~~~~ 220 (400)
+...+.. ..+| .. ..+ ...+ .....+.||++-..++.. +...+.....+. +.
T Consensus 171 ~vv~tI~-----v~g~--~~-~~P---------~g~~-~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~-~~-------- 223 (386)
T 3sjl_D 171 AFKRMLD-----VPDC--YH-IFP---------TAPD-TFFMHCRDGSLAKVAFGTEGTPEITHTEVFH-PE-------- 223 (386)
T ss_dssp EEEEEEE-----CCSE--EE-EEE---------EETT-EEEEEETTSCEEEEECCSSSCCEEEECCCCS-CT--------
T ss_pred cEEEEEE-----CCCc--ce-eec---------CCCc-eeEEECCCCCEEEEECCCCCeEEEeecceec-cc--------
Confidence 6533210 0011 00 011 1111 112334577777777764 332110001110 10
Q ss_pred cccccCe-EEEEE-CCCCcEEEEecCCeEEEEeCCCC
Q psy12356 221 SEIISSI-SDVKI-SNSGRYMISRDYLCVKVWDLHME 255 (400)
Q Consensus 221 ~~h~~~V-~~v~f-Spdg~~las~~D~tIklWD~~~~ 255 (400)
..++ ...+| .++|+++..+.+++|.+.|+.++
T Consensus 224 ---~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~ 257 (386)
T 3sjl_D 224 ---DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG 257 (386)
T ss_dssp ---TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred ---cccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence 0111 12366 47998777666799999999865
No 226
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=97.65 E-value=0.0021 Score=63.05 Aligned_cols=114 Identities=9% Similarity=0.113 Sum_probs=71.9
Q ss_pred eEEEEEECCCCCeEEEecCC------CeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe
Q psy12356 5 MREASQRFSDGELLATGDKG------GRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR 78 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~D------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp 78 (400)
....+..+||| +.+++..+ |.|.+.|..+. +++.++..-... ...-..+.|+|
T Consensus 139 ~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~-----------~v~~~~~~~~~~---------~~~~Yd~~~~p 197 (462)
T 2ece_A 139 RLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF-----------EPLGKWEIDRGD---------QYLAYDFWWNL 197 (462)
T ss_dssp EEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC-----------CEEEECCSBCTT---------CCCCCCEEEET
T ss_pred cccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC-----------eEEEEEccCCCC---------ccccceEEECC
Confidence 45667889999 77777666 78999998754 234444311000 01123477899
Q ss_pred ccCCceEEEee-------------------CCCeEEEEEccCCCc-ccc--c---ccEEEEEE--ecCCCCEEEEEe---
Q psy12356 79 RKNQAHFLLST-------------------NDQSFNIVDIKPTNM-EEL--N---EVITAAEF--HPIDCNLFVYSS--- 128 (400)
Q Consensus 79 ~~~~~~~l~ss-------------------~D~tI~lWd~~~~~~-~~~--~---~~V~sv~f--~p~~~~~las~s--- 128 (400)
+++ .++++. .+.+|.+||+.+++. +.+ . ..-..+.| +|++...++.+-
T Consensus 198 ~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~ 275 (462)
T 2ece_A 198 PNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSL 275 (462)
T ss_dssp TTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEET
T ss_pred CCC--EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeec
Confidence 874 555553 378999999987652 111 1 12344555 998766667776
Q ss_pred --CCCeEEEEecccc
Q psy12356 129 --SKGTIRLCDMRAA 141 (400)
Q Consensus 129 --~Dg~i~lWD~~~~ 141 (400)
.+++|-+|....+
T Consensus 276 ~~Lss~V~v~~~d~g 290 (462)
T 2ece_A 276 KDLSSSIWLWFYEDG 290 (462)
T ss_dssp TTCCEEEEEEEEETT
T ss_pred cCCCceEEEEEecCC
Confidence 7789988887654
No 227
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=97.50 E-value=0.0026 Score=62.37 Aligned_cols=195 Identities=11% Similarity=0.063 Sum_probs=106.3
Q ss_pred EEEEECCCCCeEEEecC--CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 7 EASQRFSDGELLATGDK--GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 7 ~~v~fspdG~~Las~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
..++|||||++|..+.. +++|.+.|+.+. +.++++.--. +....|++. ..
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~-----------kvv~~I~v~g----------------~~~~~p~g~-~~ 231 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGK-----------TFDRMLDVPD----------------CYHIFPASP-TV 231 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTT-----------EEEEEEECCS----------------EEEEEEEET-TE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCC-----------eEEEEEEcCC----------------ceeeccCCC-cE
Confidence 45789999999998864 589999999853 3334433110 122334442 24
Q ss_pred EEEeeCCCeEEEEEccCCCcc-----cc----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc--ccccc-----
Q psy12356 85 FLLSTNDQSFNIVDIKPTNME-----EL----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL--CDRHS----- 148 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~-----~~----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~--~~~~~----- 148 (400)
+++.+.|+.+.+.+..+++.. .. ......+.|.|++..++++ +..+.+.+.|+..+.. .....
T Consensus 232 ~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~-s~~g~V~ViD~~~~~~~v~~~~~~~~~~ 310 (426)
T 3c75_H 232 FYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWP-TYTGKIFQADLTAEGATFRAPIEALTEA 310 (426)
T ss_dssp EEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEE-BTTSEEEEEEECSSCEEECCCEESSCTT
T ss_pred EEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEE-eCCCcEEEEeccCCceEEeeeeeecccc
Confidence 444556666666666443321 00 0112346788888866554 4678899999864421 11000
Q ss_pred ----ceeccCcccceeceeccCchhhhhhcccCc-ceeec--C----C---CCCeEEEeecccccccCcccccccCCCCC
Q psy12356 149 ----KCLIEGTNCNCQGLIVPESKREERQSSQNR-REKED--N----R---RKPAIRLCDMRAAALCDRHSKFFEEPEDP 214 (400)
Q Consensus 149 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~----~---~dg~i~lWD~~~~~~~~~~~~~~~~~~~~ 214 (400)
........ .+.++ +++ ++... . + .++.|.+.|+.+.+... .+.
T Consensus 311 ~i~~g~~p~g~~----~va~s----------~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~----~I~----- 367 (426)
T 3c75_H 311 ERADDWRPGGWQ----QTAYH----------RQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERIN----KIE----- 367 (426)
T ss_dssp TGGGTEEECSSS----CEEEE----------GGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEE----EEE-----
T ss_pred ccccccccCCce----eeEEc----------CCCCEEEEEecccccccccCCCCEEEEEECCCCeEEE----EEE-----
Confidence 00001100 00011 111 11111 0 0 23578899988754321 110
Q ss_pred CCcccccccccCeEEEEECCCCc-EEEEe--cCCeEEEEeCCCCCCceeee
Q psy12356 215 TNKSFFSEIISSISDVKISNSGR-YMISR--DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 215 ~~~~~~~~h~~~V~~v~fSpdg~-~las~--~D~tIklWD~~~~~~~l~~~ 262 (400)
.+ .....++|+|||+ +|+++ .+++|.++|+.+.. .++++
T Consensus 368 ------vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k-vv~tI 409 (426)
T 3c75_H 368 ------LG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE-ELRSV 409 (426)
T ss_dssp ------EE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC-EEEEE
T ss_pred ------CC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC-EEEEe
Confidence 01 2467899999999 77765 37999999999864 56665
No 228
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=97.39 E-value=0.041 Score=51.05 Aligned_cols=120 Identities=12% Similarity=0.127 Sum_probs=70.6
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcc-----hhh---cccccccceeeEEEEE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPE-----FDY---LKSLEIEEKINKIRWL 77 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~-----~~~---~~~~~~~~~V~~v~~s 77 (400)
..+++++|+|+++.++..++.|..|+..+.. +..+...... ++. .........+..+++.
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~------------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~ 88 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG------------FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYN 88 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTC------------EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEE
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCc------------eEEEecccccccccccccccchhccccCCCCceEEEc
Confidence 5678999999978888889999999876431 1122210000 000 0000011236778888
Q ss_pred e-ccCCceEEEeeCCCeEEEEEccCCCcccc--------cccEEEEEEec-CCCCEEEEEeC-----------------C
Q psy12356 78 R-RKNQAHFLLSTNDQSFNIVDIKPTNMEEL--------NEVITAAEFHP-IDCNLFVYSSS-----------------K 130 (400)
Q Consensus 78 p-~~~~~~~l~ss~D~tI~lWd~~~~~~~~~--------~~~V~sv~f~p-~~~~~las~s~-----------------D 130 (400)
+ ++ .+.++.....|..+|.+++..+.+ ....+.+++.| ++ +++++... +
T Consensus 89 ~~~g---~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G-~l~v~d~~~~~~~~~~~~~~~~~~~~ 164 (322)
T 2fp8_A 89 LQNN---QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTG-IVYFTDVSTLYDDRGVQQIMDTSDKT 164 (322)
T ss_dssp TTTT---EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTC-CEEEEESCSSCCTTCHHHHHHHTCCC
T ss_pred CCCC---cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCC-EEEEECCcccccccccceehcccCCC
Confidence 6 43 566664445578888776543211 12367899999 75 67676533 3
Q ss_pred CeEEEEecccc
Q psy12356 131 GTIRLCDMRAA 141 (400)
Q Consensus 131 g~i~lWD~~~~ 141 (400)
+.|..+|..++
T Consensus 165 g~v~~~d~~~~ 175 (322)
T 2fp8_A 165 GRLIKYDPSTK 175 (322)
T ss_dssp EEEEEEETTTT
T ss_pred ceEEEEeCCCC
Confidence 67778887655
No 229
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=97.28 E-value=0.0033 Score=63.75 Aligned_cols=147 Identities=9% Similarity=0.078 Sum_probs=77.8
Q ss_pred eEEEEEccC--CCc--ccc--cccEEEEEEecCCCCEEEEEeCCCeEEEEeccccccc-----ccccceeccC-ccccee
Q psy12356 93 SFNIVDIKP--TNM--EEL--NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALC-----DRHSKCLIEG-TNCNCQ 160 (400)
Q Consensus 93 tI~lWd~~~--~~~--~~~--~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~-----~~~~~~~~~~-~~~~~~ 160 (400)
.|.+.|.++ +.. ... .....++.|+|||...++++..+.+|.++|+.+.... .......... .+....
T Consensus 255 ~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~ 334 (595)
T 1fwx_A 255 GVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPL 334 (595)
T ss_dssp TEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEE
T ss_pred cEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcc
Confidence 477777766 321 111 1223578999998666666667999999999865210 0000001111 012222
Q ss_pred ceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccc-----cccccCeEEEEECCC
Q psy12356 161 GLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFF-----SEIISSISDVKISNS 235 (400)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~v~fSpd 235 (400)
++.| .+++.+..+.-.|+.|-.||+.... +.|.+.........+ .+|...-..+.++||
T Consensus 335 h~aF----------~~dG~aY~t~~ldsqV~kwdi~~a~------~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~D 398 (595)
T 1fwx_A 335 HTAF----------DGRGNAYTSLFLDSQVVKWNIEDAI------RAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDAT 398 (595)
T ss_dssp EEEE----------CTTSEEEEEETTTTEEEEEEHHHHH------HHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCC
T ss_pred eEEE----------CCCCeEEEEEecCCcEEEEEhhHhh------hhhcccccceeEEEeecccccccceeccceEeCCC
Confidence 3333 3566666666678999999987621 011000000000000 133322234567899
Q ss_pred CcEEEEec----CC----------eEEEEeCCCC
Q psy12356 236 GRYMISRD----YL----------CVKVWDLHME 255 (400)
Q Consensus 236 g~~las~~----D~----------tIklWD~~~~ 255 (400)
|++|++++ |+ +-.|.|+..+
T Consensus 399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred CCEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 99998764 32 2389999654
No 230
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=97.04 E-value=0.052 Score=49.53 Aligned_cols=201 Identities=8% Similarity=-0.022 Sum_probs=106.3
Q ss_pred EEEEEECCCCCeEEEecC--CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 6 REASQRFSDGELLATGDK--GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~--Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
...++|+|||.+.++.+. +++|++.|+.+++ +++++.--.. .....+++ ++.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~-----------v~~~i~l~~~-----------~fgeGi~~--~g~-- 76 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGK-----------VENIHKMDDS-----------YFGEGLTL--LNE-- 76 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCC-----------EEEEEECCTT-----------CCEEEEEE--ETT--
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCC-----------EEEEEecCCC-----------cceEEEEE--eCC--
Confidence 467999999876666553 6899999998653 3333321000 00112333 332
Q ss_pred eEEE-eeCCCeEEEEEccCCCc-ccc--c-ccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCc-cc
Q psy12356 84 HFLL-STNDQSFNIVDIKPTNM-EEL--N-EVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGT-NC 157 (400)
Q Consensus 84 ~~l~-ss~D~tI~lWd~~~~~~-~~~--~-~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~-~~ 157 (400)
++.. .-.++.+.++|.++.+. ... . .. ...++++++.++++- .+++|.+.|..+.+.... +.... ..
T Consensus 77 ~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~----I~Vg~~~~ 149 (266)
T 2iwa_A 77 KLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKK----HNVKYNGH 149 (266)
T ss_dssp EEEEEETTCSEEEEEETTTTEEEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEE----EECEETTE
T ss_pred EEEEEEecCCEEEEEECCCCcEEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEE----EEECCCCc
Confidence 4444 44689999999987762 111 1 11 223566766666654 578999999988743221 10000 00
Q ss_pred ceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccc--cccc--ccCeEEEEEC
Q psy12356 158 NCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSF--FSEI--ISSISDVKIS 233 (400)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~--~~~h--~~~V~~v~fS 233 (400)
.... .+++... ++.+.+....++.|.+-|..+++... .+..+. +... ...+ ..-.+.|+|+
T Consensus 150 p~~~-------~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~----~I~~~g---~~~~~~~~~~~~~~v~nGIa~~ 214 (266)
T 2iwa_A 150 RVIR-------LNELEYI-NGEVWANIWQTDCIARISAKDGTLLG----WILLPN---LRKKLIDEGFRDIDVLNGIAWD 214 (266)
T ss_dssp ECCC-------EEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEE----EEECHH---HHHHHHHTTCTTCCCEEEEEEE
T ss_pred cccc-------ceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEE----EEECCC---cccccccccccccCceEEEEEc
Confidence 0000 0011111 33444555567788888888765421 111000 0000 0000 1245789999
Q ss_pred CCCcEEE-Ee-cCCeEEEEeCCC
Q psy12356 234 NSGRYMI-SR-DYLCVKVWDLHM 254 (400)
Q Consensus 234 pdg~~la-s~-~D~tIklWD~~~ 254 (400)
|+++.+. ++ ....+.+-|+..
T Consensus 215 ~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 215 QENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp TTTTEEEEEETTCSEEEEEEEEE
T ss_pred CCCCEEEEECCCCCeEEEEEEec
Confidence 9988665 54 357777777764
No 231
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=97.03 E-value=0.047 Score=50.13 Aligned_cols=212 Identities=7% Similarity=0.022 Sum_probs=109.6
Q ss_pred eEEEeeCCCeEEEEEccCCCcc----cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNME----ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~----~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+.+++.++.+..+|.+ ++.. .....+.++...+++ . +..++.++.|..+|.. +....... ......
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~-l~vgt~~~~l~~~d~~-g~~~~~~~-----~~~~~~ 179 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-T-IYVGSNDNYLYAINPD-GTEKWRFK-----TNDAIT 179 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-C-EEEECTTSEEEEECTT-SCEEEEEE-----CSSCCC
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-E-EEEEcCCCEEEEECCC-CCEeEEEe-----cCCCce
Confidence 67777778899999987 5521 112334556666654 4 5557778999999988 53221100 000000
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
..+.+ ..++...+.. +.+..+| .++... +... .....+.++...++|++.
T Consensus 180 ~~~~~----------d~~g~l~v~t---~~l~~~d-~~g~~~------~~~~----------~~~~~~~~~~~~~~g~l~ 229 (330)
T 3hxj_A 180 SAASI----------GKDGTIYFGS---DKVYAIN-PDGTEK------WNFY----------AGYWTVTRPAISEDGTIY 229 (330)
T ss_dssp SCCEE----------CTTCCEEEES---SSEEEEC-TTSCEE------EEEC----------CSSCCCSCCEECTTSCEE
T ss_pred eeeEE----------cCCCEEEEEe---CEEEEEC-CCCcEE------EEEc----------cCCcceeceEECCCCeEE
Confidence 00000 1223232222 6777787 443221 1100 112457788889999988
Q ss_pred EEecCCeEEEEeCCCCCCceeeecCCCcCCCCcccCCCCCceeecCcccccceeeccCccceeccccccceEEEEEcCCC
Q psy12356 240 ISRDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQ 319 (400)
Q Consensus 240 as~~D~tIklWD~~~~~~~l~~~~~h~~~~~g~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~s~dg 319 (400)
+++.++.+..+|.. + ..+..+......... + .+. ....++.....+.+. .+.++|
T Consensus 230 v~t~~~gl~~~~~~-g-~~~~~~~~~~~~~~~----------~---~~~--------~~g~l~v~t~~ggl~--~~d~~g 284 (330)
T 3hxj_A 230 VTSLDGHLYAINPD-G-TEKWRFKTGKRIESS----------P---VIG--------NTDTIYFGSYDGHLY--AINPDG 284 (330)
T ss_dssp EEETTTEEEEECTT-S-CEEEEEECSSCCCSC----------C---EEC--------TTSCEEEECTTCEEE--EECTTS
T ss_pred EEcCCCeEEEECCC-C-CEeEEeeCCCCcccc----------c---eEc--------CCCeEEEecCCCCEE--EECCCC
Confidence 88777778777753 3 334444322111000 0 000 011122222222333 345666
Q ss_pred cEEeecccchhhcccccceeEEEEccCCCEEEEecCCeEEEEeCcc
Q psy12356 320 LTVEASPRGIFADAHTYHISSTSVNSDQETYLSADDLRINLWHLEI 365 (400)
Q Consensus 320 ~~~~~~~~~~~~~gh~~~V~~i~fspDg~~las~~D~~i~lW~~~~ 365 (400)
+.+.... -....+.++.+.++|+.++.+.++.+++-..+.
T Consensus 285 ~~~~~~~------~~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 285 TEKWNFE------TGSWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp CEEEEEE------CSSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred cEEEEEE------cCCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 5432111 124567788889999988888899998887654
No 232
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.90 E-value=0.041 Score=49.98 Aligned_cols=194 Identities=8% Similarity=-0.003 Sum_probs=97.8
Q ss_pred EEEEEECCCCCeEEEecCCC--eEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 6 REASQRFSDGELLATGDKGG--RVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
...+.|+ ||.+..+.+.+| +|+++|+.+++ +++.+.-.. ........+++. .
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgk-----------v~~~~~l~~-------------~~FgeGit~~g~-~ 98 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGK-----------TLQQIELGK-------------RYFGEGISDWKD-K 98 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCC-----------EEEEEECCT-------------TCCEEEEEEETT-E
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCc-----------EEEEEecCC-------------ccceeEEEEeCC-E
Confidence 4567888 788888888776 89999998653 333332111 112222233332 2
Q ss_pred eEEEeeCCCeEEEEEccCCCcc-cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceece
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNME-ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGL 162 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~-~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (400)
.+.+.-.++.+.++|.++.+.. ...-.-....+.++++.+++|- .+++|.++|..+.+...+.. + ...+..+..+
T Consensus 99 ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~--V-~~~g~~~~~l 174 (262)
T 3nol_A 99 IVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSD-GTPVLRFLDPESLTPVRTIT--V-TAHGEELPEL 174 (262)
T ss_dssp EEEEESSSSEEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECC-SSSEEEEECTTTCSEEEEEE--C-EETTEECCCE
T ss_pred EEEEEeeCCEEEEEECccCcEEEEEECCCCceEEecCCCEEEEEC-CCCeEEEEcCCCCeEEEEEE--e-ccCCcccccc
Confidence 3334456899999999887631 1110001123335555555554 47889999998875432110 0 0000000000
Q ss_pred eccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCC-CCCcccccccccCeEEEEECCCCcEEE-
Q psy12356 163 IVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPED-PTNKSFFSEIISSISDVKISNSGRYMI- 240 (400)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~V~~v~fSpdg~~la- 240 (400)
+++. ..++...+....++.|.+.|.++++... .+..+.. +...+. ..-..-.+.|||+|+++.|.
T Consensus 175 -------NELe-~~~G~lyan~w~~~~I~vIDp~tG~V~~----~Id~~~L~~~~~~~-~~~~~vlNGIA~dp~~~~lfV 241 (262)
T 3nol_A 175 -------NELE-WVDGEIFANVWQTNKIVRIDPETGKVTG----IIDLNGILAEAGPL-PSPIDVLNGIAWDKEHHRLFV 241 (262)
T ss_dssp -------EEEE-EETTEEEEEETTSSEEEEECTTTCBEEE----EEECTTGGGGSCSC-CSSCCCEEEEEEETTTTEEEE
T ss_pred -------ceeE-EECCEEEEEEccCCeEEEEECCCCcEEE----EEECCcCccccccc-cCcCCceEEEEEcCCCCEEEE
Confidence 0001 1134445555567788888888765421 1111100 000000 00012458899999877665
Q ss_pred Ee
Q psy12356 241 SR 242 (400)
Q Consensus 241 s~ 242 (400)
++
T Consensus 242 TG 243 (262)
T 3nol_A 242 TG 243 (262)
T ss_dssp EE
T ss_pred EC
Confidence 44
No 233
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=96.67 E-value=0.011 Score=62.23 Aligned_cols=110 Identities=12% Similarity=0.022 Sum_probs=67.7
Q ss_pred eEEEEEEC-CCCCeEEEec-----CCCeEEEEEcCCC-CccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEE
Q psy12356 5 MREASQRF-SDGELLATGD-----KGGRVVIFQRDPL-SKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWL 77 (400)
Q Consensus 5 ~v~~v~fs-pdG~~Las~s-----~Dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~s 77 (400)
.+...+|| |||++||-+. ...+|+++|+.++ +. +...+. .....++|+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~----------l~~~~~---------------~~~~~~~Ws 229 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQT----------IADKVS---------------GTNGEIVWG 229 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCC----------CCCCEE---------------EECSCCEEC
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEe----------CCcccc---------------CceeeEEEe
Confidence 67889999 9999999432 2235999999864 20 000111 112357899
Q ss_pred eccCCceEEEeeCC-----CeEEEEEccCCCcc-------cccccEEEEEEecCCCCEEEEEeC--CCeEEEEecccc
Q psy12356 78 RRKNQAHFLLSTND-----QSFNIVDIKPTNME-------ELNEVITAAEFHPIDCNLFVYSSS--KGTIRLCDMRAA 141 (400)
Q Consensus 78 p~~~~~~~l~ss~D-----~tI~lWd~~~~~~~-------~~~~~V~sv~f~p~~~~~las~s~--Dg~i~lWD~~~~ 141 (400)
||+. .++..+.| ..|.++++.++... .......++.|+||+..+++++.. ...|.++|+.++
T Consensus 230 pDg~--~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 230 PDHT--SLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp SSTT--EEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred cCCC--EEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 9874 56655544 36888888765421 112345688999987444334332 346778888765
No 234
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=96.20 E-value=0.45 Score=42.56 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=63.3
Q ss_pred EEEEEECCCCCeEEEecCCC--eEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 6 REASQRFSDGELLATGDKGG--RVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
...+.|++ +.+..|.+.+| +|+++|+.+++ +++...-... .......+++ +.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~~tgk-----------v~~~~~l~~~-------------~fgeGi~~~~-~~ 76 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDLETGR-----------ILQRAEVPPP-------------YFGAGIVAWR-DR 76 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEETTTCC-----------EEEEEECCTT-------------CCEEEEEEET-TE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEECCCCC-----------EEEEEeCCCC-------------cceeEEEEeC-CE
Confidence 45678886 67777777654 89999998653 3333321110 1111122233 22
Q ss_pred eEEEeeCCCeEEEEEccCCCcc-cc--cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNME-EL--NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~-~~--~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
.+.+.-.++.+.++|.++.+.. .. ...=+++ .++++.+++|- .++.|.++|..+.+.
T Consensus 77 ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gwgl--t~dg~~L~vSd-gs~~l~~iDp~t~~~ 136 (243)
T 3mbr_X 77 LIQLTWRNHEGFVYDLATLTPRARFRYPGEGWAL--TSDDSHLYMSD-GTAVIRKLDPDTLQQ 136 (243)
T ss_dssp EEEEESSSSEEEEEETTTTEEEEEEECSSCCCEE--EECSSCEEEEC-SSSEEEEECTTTCCE
T ss_pred EEEEEeeCCEEEEEECCcCcEEEEEeCCCCceEE--eeCCCEEEEEC-CCCeEEEEeCCCCeE
Confidence 3344456899999999887631 11 1111233 35565666665 478899999988754
No 235
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=96.19 E-value=0.52 Score=43.16 Aligned_cols=196 Identities=14% Similarity=0.101 Sum_probs=103.1
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
....++|+|+|+++++-..+++|+.||.+.. ....+.. . ..+..+++.|++ .
T Consensus 33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~------------~~~~~~~-~------------~~p~gia~~~dG---~ 84 (306)
T 2p4o_A 33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN------------QQIHATV-E------------GKVSGLAFTSNG---D 84 (306)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC------------EEEEEEC-S------------SEEEEEEECTTS---C
T ss_pred CcceEEECCCCCEEEEeCCCCeEEEECCCCc------------eEEEEeC-C------------CCceeEEEcCCC---c
Confidence 4578999999998888778899999987631 1111111 0 236788888876 3
Q ss_pred EEEee--CCC-eEEEEEccCCCcccc-----cccEEEEEEecCCCCEEEEEeCCCeEEEEeccccc--ccccccceeccC
Q psy12356 85 FLLST--NDQ-SFNIVDIKPTNMEEL-----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAA--LCDRHSKCLIEG 154 (400)
Q Consensus 85 ~l~ss--~D~-tI~lWd~~~~~~~~~-----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~--~~~~~~~~~~~~ 154 (400)
++++. .++ .|..+|..++++..+ ......+++.+. ...+++-..++.|..+|..++. ..... ......
T Consensus 85 l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~-~~~~~~ 162 (306)
T 2p4o_A 85 LVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEH-PMLARS 162 (306)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEEC-GGGSCS
T ss_pred EEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEEC-Cccccc
Confidence 44443 233 455566666664211 112345555553 3455655568888888876531 10000 000000
Q ss_pred cccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeeccc-ccccCcccccccCCCCCCCcccccccccCeEEEEE
Q psy12356 155 TNCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRA-AALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKI 232 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~-~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~f 232 (400)
. ....+.. .+++ .+++ ....+....+.|..+|+.. +... ..+.+. . ......+++
T Consensus 163 ~--~~~~~~~----pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--~~~~~~------------~-~~~P~gi~v 219 (306)
T 2p4o_A 163 N--SESVFPA----ANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--EPEIFV------------E-QTNIDDFAF 219 (306)
T ss_dssp S--TTCCSCS----EEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--CCEEEE------------E-SCCCSSEEE
T ss_pred c--ccCCCCc----CCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--ccEEEe------------c-cCCCCCeEE
Confidence 0 0000000 0112 1232 3445555678899999864 2110 001110 0 023456899
Q ss_pred CCCCcEEEEe-cCCeEEEEeCC
Q psy12356 233 SNSGRYMISR-DYLCVKVWDLH 253 (400)
Q Consensus 233 Spdg~~las~-~D~tIklWD~~ 253 (400)
+|+|++.++. ..+.|.++|..
T Consensus 220 d~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 220 DVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp BTTCCEEEECBTTCCEEEECTT
T ss_pred CCCCCEEEEeCCCCeEEEECCC
Confidence 9999887764 45778888764
No 236
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=96.09 E-value=0.13 Score=46.79 Aligned_cols=108 Identities=8% Similarity=-0.041 Sum_probs=64.0
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
...+.|+ ++.+..+.+.+|.|+++|+.+++ +++.+ -.. ........++++ ..+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgk-----------v~~~~-l~~-------------~~FgeGit~~g~-~Ly 109 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQ-----------PVWME-RLG-------------NIFAEGLASDGE-RLY 109 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSS-----------CSEEE-ECT-------------TCCEEEEEECSS-CEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCc-----------EEeEE-CCC-------------CcceeEEEEeCC-EEE
Confidence 3467777 46778888889999999998753 22222 110 011111233432 244
Q ss_pred EEeeCCCeEEEEEccCCCcc-cc--cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 86 LLSTNDQSFNIVDIKPTNME-EL--NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~~~-~~--~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
.+.-.++.+.++|.++.+.. .. ...-++++ ++++.+++| ..+++|.++|..+.+.
T Consensus 110 ~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGwGLt--~Dg~~L~vS-dGs~~l~~iDp~T~~v 167 (268)
T 3nok_A 110 QLTWTEGLLFTWSGMPPQRERTTRYSGEGWGLC--YWNGKLVRS-DGGTMLTFHEPDGFAL 167 (268)
T ss_dssp EEESSSCEEEEEETTTTEEEEEEECSSCCCCEE--EETTEEEEE-CSSSEEEEECTTTCCE
T ss_pred EEEccCCEEEEEECCcCcEEEEEeCCCceeEEe--cCCCEEEEE-CCCCEEEEEcCCCCeE
Confidence 44556899999999887631 11 11112344 455445554 4588999999988754
No 237
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=96.06 E-value=0.74 Score=40.98 Aligned_cols=151 Identities=8% Similarity=0.083 Sum_probs=85.0
Q ss_pred eeEEEEEeccCCceEEEe-eCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccc
Q psy12356 71 INKIRWLRRKNQAHFLLS-TNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCD 145 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~s-s~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~ 145 (400)
+..++|.|++. .+..+ ..++.|..+|++++..... .....+++++|+++.++++....+.|.++|+.....
T Consensus 38 ~~gi~~d~~~~--~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-- 113 (267)
T 1npe_A 38 IIGLAFDCVDK--VVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-- 113 (267)
T ss_dssp EEEEEEETTTT--EEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--
T ss_pred EEEEEEecCCC--EEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE--
Confidence 66889988642 44444 5678999999876643211 134678999997667777777788999999865421
Q ss_pred cccceeccCcccceeceeccCchhhhhhccc-CcceeecCCC--CCeEEEeecccccccCcccccccCCCCCCCcccccc
Q psy12356 146 RHSKCLIEGTNCNCQGLIVPESKREERQSSQ-NRREKEDNRR--KPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSE 222 (400)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (400)
..+.........++.+. + .+....+... .+.|..+++..... +.+. ..
T Consensus 114 ---~~~~~~~~~~P~~i~vd----------~~~g~lyv~~~~~~~~~I~~~~~dg~~~-----~~~~-----------~~ 164 (267)
T 1npe_A 114 ---RVLFDTGLVNPRGIVTD----------PVRGNLYWTDWNRDNPKIETSHMDGTNR-----RILA-----------QD 164 (267)
T ss_dssp ---EEEECSSCSSEEEEEEE----------TTTTEEEEEECCSSSCEEEEEETTSCCC-----EEEE-----------CT
T ss_pred ---EEEEECCCCCccEEEEe----------eCCCEEEEEECCCCCcEEEEEecCCCCc-----EEEE-----------EC
Confidence 00100000111122221 2 2333222222 45777666542110 1110 01
Q ss_pred cccCeEEEEECCCCcEEE-E-ecCCeEEEEeCCC
Q psy12356 223 IISSISDVKISNSGRYMI-S-RDYLCVKVWDLHM 254 (400)
Q Consensus 223 h~~~V~~v~fSpdg~~la-s-~~D~tIklWD~~~ 254 (400)
.......++++|+++.|. + ...+.|.++|...
T Consensus 165 ~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 165 NLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp TCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred CCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 113467899999877654 4 3468999999874
No 238
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=96.00 E-value=0.12 Score=53.75 Aligned_cols=81 Identities=14% Similarity=0.171 Sum_probs=46.3
Q ss_pred EEEECCCCCeEEEecCCCe-------------------EEEEEcCCCCccccCCCCcceeeeeeec--cCcchhhccccc
Q psy12356 8 ASQRFSDGELLATGDKGGR-------------------VVIFQRDPLSKTSIPKRGEYNVYSTFQS--HEPEFDYLKSLE 66 (400)
Q Consensus 8 ~v~fspdG~~Las~s~Dg~-------------------I~iwd~~~~~~~~~~~~~~~~~~~~~~~--h~~~~~~~~~~~ 66 (400)
.++|+|++++|..++.++. |.-||..+++. +=.++. |. ..++-
T Consensus 239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~-----------~W~~~~~~~d-~wd~~---- 302 (689)
T 1yiq_A 239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEY-----------VWHYQTTPGD-AWDYT---- 302 (689)
T ss_dssp CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCE-----------EEEEESSTTC-CSCCC----
T ss_pred ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCce-----------eEeeecCCcc-ccccc----
Confidence 5789999999999988864 89999887541 112221 21 00000
Q ss_pred ccceeeEEEEEeccCC-ceEEEeeCCCeEEEEEccCCCc
Q psy12356 67 IEEKINKIRWLRRKNQ-AHFLLSTNDQSFNIVDIKPTNM 104 (400)
Q Consensus 67 ~~~~V~~v~~sp~~~~-~~~l~ss~D~tI~lWd~~~~~~ 104 (400)
....+.......++.. ..++.++.++.++++|.++|++
T Consensus 303 ~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~ 341 (689)
T 1yiq_A 303 ATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGEL 341 (689)
T ss_dssp CCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred CCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCE
Confidence 0001111112223311 1355578899999999999874
No 239
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.00 E-value=1.4 Score=43.70 Aligned_cols=112 Identities=14% Similarity=0.182 Sum_probs=64.6
Q ss_pred EEEEEECC-C-CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEE-------
Q psy12356 6 REASQRFS-D-GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW------- 76 (400)
Q Consensus 6 v~~v~fsp-d-G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~------- 76 (400)
...|+|+| + +++.++-...+.|++.|..+.. +.++..-... .-.....|+|
T Consensus 141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~------------v~~l~~~~~~--------~~~~p~~ia~~~~~~~~ 200 (496)
T 3kya_A 141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM------------LSSPLNINTI--------PTNRIRSIAFNKKIEGY 200 (496)
T ss_dssp EEEEEEETTEEEEEEEEEETEEEEEEEETTTTE------------EEEEECCTTS--------SCSBEEEEEECCCBTTT
T ss_pred CCEEEEccCCCCEEEEEECCCCeEEEEECCCCE------------EEEEEccCcc--------ccCCCcEEEEeeccccc
Confidence 56899999 3 4555554445778888887531 2233211100 0023678999
Q ss_pred EeccCCceEEEeeCCC-------eEEEEEccC-CCccc------cc--ccEEEEEEecCCCCEEEEEeCCCeEEEEecc
Q psy12356 77 LRRKNQAHFLLSTNDQ-------SFNIVDIKP-TNMEE------LN--EVITAAEFHPIDCNLFVYSSSKGTIRLCDMR 139 (400)
Q Consensus 77 sp~~~~~~~l~ss~D~-------tI~lWd~~~-~~~~~------~~--~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~ 139 (400)
.+++. .++++...+ .|.+.+... +.+.. +. .....++++|+++.++++-..++.|..+|+.
T Consensus 201 d~~G~--~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~ 277 (496)
T 3kya_A 201 ADEAE--YMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLV 277 (496)
T ss_dssp BCTTC--EEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHH
T ss_pred CCCCC--EEEEEeCCCCCcccCceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecc
Confidence 88763 455554322 255555443 33321 10 1234678888766777777778888888887
No 240
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=95.97 E-value=0.048 Score=57.31 Aligned_cols=57 Identities=7% Similarity=0.120 Sum_probs=36.9
Q ss_pred eeEEEEE-eccCCceEEEe-eCC----CeEEEEEccCC-Cc-c-cccccEEEEEEecCCCCEEEEEeCC
Q psy12356 71 INKIRWL-RRKNQAHFLLS-TND----QSFNIVDIKPT-NM-E-ELNEVITAAEFHPIDCNLFVYSSSK 130 (400)
Q Consensus 71 V~~v~~s-p~~~~~~~l~s-s~D----~tI~lWd~~~~-~~-~-~~~~~V~sv~f~p~~~~~las~s~D 130 (400)
+...+|| ||+. .++.+ ..+ .+|+++|++++ +. . .......+++|+||+ +.|+..+.|
T Consensus 176 ~~~~~~S~PDG~--~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg-~~l~y~~~d 241 (751)
T 2xe4_A 176 VMEVKPAPPEHD--LVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDH-TSLFYVTKD 241 (751)
T ss_dssp EEEEEECTTTTC--EEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSST-TEEEEEEEC
T ss_pred EeeeEecCCCCC--EEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCC-CEEEEEEEC
Confidence 5678999 9874 55543 222 36999999988 62 1 122223468899986 566666654
No 241
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.86 E-value=0.16 Score=52.77 Aligned_cols=59 Identities=10% Similarity=0.046 Sum_probs=38.3
Q ss_pred CCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE-EecCCeEEEEeCCCCCCceeeec
Q psy12356 187 KPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI-SRDYLCVKVWDLHMESRPVETYP 263 (400)
Q Consensus 187 dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la-s~~D~tIklWD~~~~~~~l~~~~ 263 (400)
.|.|..||+++++.. |.. .+..++....++++|.++. ++.|+.+++||.+++. .+..+.
T Consensus 456 ~g~l~A~D~~tG~~~------W~~-----------~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~-~lw~~~ 515 (677)
T 1kb0_A 456 FGRLLAWDPVAQKAA------WSV-----------EHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGE-KLWEAP 515 (677)
T ss_dssp EEEEEEEETTTTEEE------EEE-----------EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEE
T ss_pred ccEEEEEeCCCCcEE------eec-----------CCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCc-eeeeee
Confidence 478999999887532 211 1112333445666666665 4568999999999974 677765
No 242
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=95.72 E-value=1.6 Score=42.32 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=20.8
Q ss_pred ceeEEEEc-cCCCEEEE-ecCCeEEEEeCc
Q psy12356 337 HISSTSVN-SDQETYLS-ADDLRINLWHLE 364 (400)
Q Consensus 337 ~V~~i~fs-pDg~~las-~~D~~i~lW~~~ 364 (400)
....|+++ ++|.++++ ...+.||..+++
T Consensus 403 ~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 403 HPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 46789999 67777776 357788887654
No 243
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=95.65 E-value=0.7 Score=42.49 Aligned_cols=115 Identities=8% Similarity=-0.084 Sum_probs=66.1
Q ss_pred eEEEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEe-ccCC
Q psy12356 5 MREASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR-RKNQ 82 (400)
Q Consensus 5 ~v~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp-~~~~ 82 (400)
.+..++++| +|+++++ ...+.|..+|..++ .. ..+...... ..-...+.+++.| ++.
T Consensus 81 ~p~gi~~~~~~g~l~v~-d~~~~i~~~d~~~g---------~~---~~~~~~~~~-------~~~~~p~~i~~d~~~G~- 139 (322)
T 2fp8_A 81 RTYDISYNLQNNQLYIV-DCYYHLSVVGSEGG---------HA---TQLATSVDG-------VPFKWLYAVTVDQRTGI- 139 (322)
T ss_dssp CEEEEEEETTTTEEEEE-ETTTEEEEECTTCE---------EC---EEEESEETT-------EECSCEEEEEECTTTCC-
T ss_pred CCceEEEcCCCCcEEEE-ECCCCEEEEeCCCC---------EE---EEecccCCC-------CcccccceEEEecCCCE-
Confidence 478899998 6765554 44455888886532 11 122111000 0001256788887 652
Q ss_pred ceEEEeeC-----------------CCeEEEEEccCCCccccc---ccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 83 AHFLLSTN-----------------DQSFNIVDIKPTNMEELN---EVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 83 ~~~l~ss~-----------------D~tI~lWd~~~~~~~~~~---~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+++... ++.|..+|.++++..... ..-+.++|+|++..++++-..++.|..+|+...
T Consensus 140 -l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~ 217 (322)
T 2fp8_A 140 -VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGP 217 (322)
T ss_dssp -EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSST
T ss_pred -EEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 4444221 356777887666532211 224578999986446666667789999998754
No 244
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=95.65 E-value=1.1 Score=39.79 Aligned_cols=199 Identities=10% Similarity=-0.012 Sum_probs=107.6
Q ss_pred eEEEEEECCCCCeE-EEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELL-ATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~L-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..++|+|+++.| ++-..++.|.+++.++.. . ..+.... -.....+++.|++.
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~-----------~-~~~~~~~-----------~~~p~~ia~d~~~~-- 91 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGE-----------P-TTIIRQD-----------LGSPEGIALDHLGR-- 91 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCC-----------C-EEEECTT-----------CCCEEEEEEETTTT--
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCC-----------c-EEEEECC-----------CCCccEEEEEecCC--
Confidence 35689999966544 455567899999987431 1 1111100 02367788988642
Q ss_pred eEEE-eeCCCeEEEEEccCCCcccc---c-ccEEEEEEecCCCCEEEEEeC--CCeEEEEecccccccccccceeccCcc
Q psy12356 84 HFLL-STNDQSFNIVDIKPTNMEEL---N-EVITAAEFHPIDCNLFVYSSS--KGTIRLCDMRAAALCDRHSKCLIEGTN 156 (400)
Q Consensus 84 ~~l~-ss~D~tI~lWd~~~~~~~~~---~-~~V~sv~f~p~~~~~las~s~--Dg~i~lWD~~~~~~~~~~~~~~~~~~~ 156 (400)
.+.. ....+.|.+++++....+.. . ..-..++++|+++.++++... .+.|..+++..... . .+.....
T Consensus 92 ~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~----~~~~~~~ 166 (267)
T 1npe_A 92 TIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R----ILAQDNL 166 (267)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E----EEECTTC
T ss_pred eEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E----EEEECCC
Confidence 4444 45678899999875432111 1 345789999976666666544 46888888764311 0 0100000
Q ss_pred cceeceeccCchhhhhhccc-CcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCC
Q psy12356 157 CNCQGLIVPESKREERQSSQ-NRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpd 235 (400)
....++.+. + .+....+....+.|..+|....... ..+. + ...-..++.. +
T Consensus 167 ~~P~gia~d----------~~~~~lyv~d~~~~~I~~~~~~g~~~~----~~~~------------~-~~~P~gi~~d-~ 218 (267)
T 1npe_A 167 GLPNGLTFD----------AFSSQLCWVDAGTHRAECLNPAQPGRR----KVLE------------G-LQYPFAVTSY-G 218 (267)
T ss_dssp SCEEEEEEE----------TTTTEEEEEETTTTEEEEEETTEEEEE----EEEE------------C-CCSEEEEEEE-T
T ss_pred CCCcEEEEc----------CCCCEEEEEECCCCEEEEEecCCCceE----EEec------------C-CCCceEEEEe-C
Confidence 111122221 2 2344444456788999988643210 0110 0 0122455553 3
Q ss_pred CcEEEEe-cCCeEEEEeCCCCCCceeee
Q psy12356 236 GRYMISR-DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 236 g~~las~-~D~tIklWD~~~~~~~l~~~ 262 (400)
+.+.++. ..+.|..+|..++. .++++
T Consensus 219 ~~lyva~~~~~~v~~~d~~~g~-~~~~i 245 (267)
T 1npe_A 219 KNLYYTDWKTNSVIAMDLAISK-EMDTF 245 (267)
T ss_dssp TEEEEEETTTTEEEEEETTTTE-EEEEE
T ss_pred CEEEEEECCCCeEEEEeCCCCC-ceEEE
Confidence 4444453 46889999988753 34444
No 245
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=95.53 E-value=1.6 Score=41.04 Aligned_cols=27 Identities=22% Similarity=0.422 Sum_probs=21.3
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEc
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQR 32 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~ 32 (400)
....++|.|||+++++ ..+|.|++++.
T Consensus 30 ~P~~ia~~pdG~l~V~-e~~g~I~~~d~ 56 (354)
T 3a9g_A 30 VPWSIAPLGGGRYLVT-ERPGRLVLISP 56 (354)
T ss_dssp CEEEEEEEETTEEEEE-ETTTEEEEECS
T ss_pred CCeEEEEcCCCeEEEE-eCCCEEEEEeC
Confidence 4678999999986665 45699999973
No 246
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.51 E-value=2.9 Score=43.71 Aligned_cols=204 Identities=8% Similarity=0.055 Sum_probs=107.7
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|.++...++|++-+ |..++-+..|+..+.. . ..+. +...... .++ ....|.++...+++ .
T Consensus 358 ~V~~i~~d~~g~lWi-Gt~~~Gl~~~~~~~~~---------~---~~~~-~~~~~~~-~~l-~~~~v~~i~~d~~g---~ 418 (795)
T 4a2l_A 358 VVSCIVEDKDKNLWI-GTNDGGLNLYNPITQR---------F---TSYT-LQEDESA-RGI-GSNNIKAVYVDEKK---S 418 (795)
T ss_dssp SEEEEEECTTSCEEE-EESSSCEEEECTTTCC---------E---EEEC-CC-------CC-SCSCEEEEEEETTT---T
T ss_pred eeEEEEECCCCCEEE-EECCCCeEEEcCCCCc---------E---EEEe-cCCCCcc-cCC-CCccEEEEEEcCCC---C
Confidence 488898999998655 6666678888876431 1 1111 0000000 000 01237777665443 5
Q ss_pred -EEEeeCCCeEEEEEccCCCcccc--------cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccc-eeccC
Q psy12356 85 -FLLSTNDQSFNIVDIKPTNMEEL--------NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSK-CLIEG 154 (400)
Q Consensus 85 -~l~ss~D~tI~lWd~~~~~~~~~--------~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~-~~~~~ 154 (400)
+.+++.++-+.++|.+++++... ...|.++...+++ ++.+.+ .+ -+.+||..++....-... ....+
T Consensus 419 ~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g-~lwigt-~~-Gl~~~~~~~~~~~~~~~~~~~~~~ 495 (795)
T 4a2l_A 419 LVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEG-NLWLGT-LS-ALVRFNPEQRSFTTIEKEKDGTPV 495 (795)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSS-CEEEEE-SS-CEEEEETTTTEEEECCBCTTCCBC
T ss_pred EEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCC-CEEEEe-cC-ceeEEeCCCCeEEEcccccccccc
Confidence 77777777789999887764321 2468899888864 555544 34 488899877632110000 00000
Q ss_pred cccceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEEC
Q psy12356 155 TNCNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKIS 233 (400)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fS 233 (400)
....+..+.. -.++ ..+++ . +.+..||..+... . +.... ... ......|.++...
T Consensus 496 ~~~~i~~i~~----------d~~g~lWigt--~-~Gl~~~~~~~~~~--~----~~~~~---~~~--~l~~~~i~~i~~d 551 (795)
T 4a2l_A 496 VSKQITTLFR----------DSHKRLWIGG--E-EGLSVFKQEGLDI--Q----KASIL---PVS--NVTKLFTNCIYEA 551 (795)
T ss_dssp CCCCEEEEEE----------CTTCCEEEEE--S-SCEEEEEEETTEE--E----ECCCS---CSC--GGGGSCEEEEEEC
T ss_pred CCceEEEEEE----------CCCCCEEEEe--C-CceEEEeCCCCeE--E----EecCC---CCC--CCCCCeeEEEEEC
Confidence 0011111111 1223 23333 2 4577778765332 1 10000 000 0123579999999
Q ss_pred CCCcEEEEecCCeEEEEeCCCC
Q psy12356 234 NSGRYMISRDYLCVKVWDLHME 255 (400)
Q Consensus 234 pdg~~las~~D~tIklWD~~~~ 255 (400)
++|++.+++.. -+..||..++
T Consensus 552 ~~g~lWigT~~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 552 SNGIIWVGTRE-GFYCFNEKDK 572 (795)
T ss_dssp TTSCEEEEESS-CEEEEETTTT
T ss_pred CCCCEEEEeCC-CceeECCCCC
Confidence 99998877655 6778888754
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=95.47 E-value=1.3 Score=39.51 Aligned_cols=172 Identities=11% Similarity=0.057 Sum_probs=96.4
Q ss_pred CcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCC--CeEEEEEccCCCcc-c--ccccE--EEEEE
Q psy12356 44 GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTND--QSFNIVDIKPTNME-E--LNEVI--TAAEF 116 (400)
Q Consensus 44 ~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D--~tI~lWd~~~~~~~-~--~~~~V--~sv~f 116 (400)
..+++++++ .|.+. .-...+.|++ + ..+.+++.+ ..|+..|+++++.. . +.... -++++
T Consensus 7 ~~~~v~~~~-phd~~----------~ftqGL~~~~-~--~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~ 72 (243)
T 3mbr_X 7 QGYRVVKRY-PHDTT----------AFTEGLFYLR-G--HLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVA 72 (243)
T ss_dssp CCEEEEEEE-ECCTT----------CCEEEEEEET-T--EEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEE
T ss_pred cceEEEEEc-CCCCc----------cccccEEEEC-C--EEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEE
Confidence 345667777 66543 2356788875 2 234444543 59999999999842 1 12222 34444
Q ss_pred ecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecc
Q psy12356 117 HPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMR 196 (400)
Q Consensus 117 ~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~ 196 (400)
. ++.+++..-.++.+.++|..+.++..++.- . ...|++.. .......+.+ ++.|.++|..
T Consensus 73 ~--~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~---~---~~Gwglt~-----------dg~~L~vSdg-s~~l~~iDp~ 132 (243)
T 3mbr_X 73 W--RDRLIQLTWRNHEGFVYDLATLTPRARFRY---P---GEGWALTS-----------DDSHLYMSDG-TAVIRKLDPD 132 (243)
T ss_dssp E--TTEEEEEESSSSEEEEEETTTTEEEEEEEC---S---SCCCEEEE-----------CSSCEEEECS-SSEEEEECTT
T ss_pred e--CCEEEEEEeeCCEEEEEECCcCcEEEEEeC---C---CCceEEee-----------CCCEEEEECC-CCeEEEEeCC
Confidence 4 446777777799999999998865433211 0 01122211 1222333333 7789999988
Q ss_pred cccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeee
Q psy12356 197 AAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~ 262 (400)
+.+.... +..-. .. . . ...++.+.|. +|++.|.. .+..|.+-|.+++. .+..+
T Consensus 133 t~~~~~~-I~V~~-~g------~--~-~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~-V~~~i 186 (243)
T 3mbr_X 133 TLQQVGS-IKVTA-GG------R--P-LDNLNELEWV-NGELLANVWLTSRIARIDPASGK-VVAWI 186 (243)
T ss_dssp TCCEEEE-EECEE-TT------E--E-CCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCB-EEEEE
T ss_pred CCeEEEE-EEEcc-CC------c--c-cccceeeEEe-CCEEEEEECCCCeEEEEECCCCC-EEEEE
Confidence 7543211 11100 00 0 0 0234556664 78877655 46799999999874 45555
No 248
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=95.37 E-value=3.2 Score=43.36 Aligned_cols=197 Identities=10% Similarity=0.108 Sum_probs=105.6
Q ss_pred EEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeee-ccCcchhhcccccccce-eeEEEEEeccCCc
Q psy12356 6 REASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQ-SHEPEFDYLKSLEIEEK-INKIRWLRRKNQA 83 (400)
Q Consensus 6 v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~-V~~v~~sp~~~~~ 83 (400)
|.++...++|++.+... +.+.+||..+.+ + ..+. ++. ... |.++...+++
T Consensus 133 i~~i~~d~~g~lwi~t~--~gl~~~~~~~~~-----------~-~~~~~~~~-----------~~~~i~~i~~d~~g--- 184 (795)
T 4a2l_A 133 VNGIEEISPEQLLISTP--EGLIMFDIKESK-----------F-IDDSFSTA-----------MHKTIASTLYRQGD--- 184 (795)
T ss_dssp CCEEEEEETTEEEEEET--TEEEEEETTTTE-----------E-ECSSSCHH-----------HHTCCEEEEEEETT---
T ss_pred EEEEEECCCCCEEEEEC--CceEEEECCCCE-----------E-EeccCCCC-----------CCcceEEEEECCCC---
Confidence 77788888888776543 458888875421 1 1111 000 012 6667666554
Q ss_pred eEEEeeCCCeEEEEEccCCCcccc-----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccce--eccCcc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEEL-----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKC--LIEGTN 156 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~~-----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~--~~~~~~ 156 (400)
.+.+++.++-+..||.+++++... ...|.++...+++ .+.+. +.++-+..||..++....-.... ...+..
T Consensus 185 ~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lwig-t~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~ 262 (795)
T 4a2l_A 185 QIYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPT-RIWVA-TEGAGLFLINPKTKEIKNYLHSPSNPKSISS 262 (795)
T ss_dssp EEEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETT-EEEEE-EBSSCEEEEETTTTEEEEECCCTTCTTSCSC
T ss_pred CEEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCC-CEEEE-ECCCCeEEEeCCCCeEEEeecCCCCccccCC
Confidence 566666655688889877664321 3458888888864 55554 44434888998765321100000 000111
Q ss_pred cceeceeccCchhhhhhcccCc-ceeecCCCCCeEEEeecccccccCccccccc-CCCCCCCcccccccccCeEEEEECC
Q psy12356 157 CNCQGLIVPESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFE-EPEDPTNKSFFSEIISSISDVKISN 234 (400)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~-~~~~~~~~~~~~~h~~~V~~v~fSp 234 (400)
..+..+.. -.++ ..+++ .+ .+.+||..+... ..+. .+..+ . .-....|.++...+
T Consensus 263 ~~i~~i~~----------d~~g~lWigt--~~-Gl~~~~~~~~~~-----~~~~~~~~~~---~--~l~~~~i~~i~~D~ 319 (795)
T 4a2l_A 263 NYIRSLAM----------DSQNRLWIGT--FN-DLNIYHEGTDSF-----ASYSSNPVEN---G--SLSQRSVRSIFMDS 319 (795)
T ss_dssp SBEEEEEE----------CTTSCEEEEE--SS-CEEEEETTTTEE-----EEECCCTTST---T--SCSSSCEEEEEECT
T ss_pred CeEEEEEE----------cCCCCEEEEe--CC-hhheEcCCCCeE-----EEEecCCCCC---C--CCCCCcEEEEEEeC
Confidence 11111111 1222 33444 23 577888765432 1111 01000 0 01235799999999
Q ss_pred CCcEEEEecCCeEEEEeCCCC
Q psy12356 235 SGRYMISRDYLCVKVWDLHME 255 (400)
Q Consensus 235 dg~~las~~D~tIklWD~~~~ 255 (400)
+|.+-+++.++-|..+|..+.
T Consensus 320 ~g~lWigt~~~Gl~~~~~~~~ 340 (795)
T 4a2l_A 320 QGGMWLGTYFGGLNYYHPIRN 340 (795)
T ss_dssp TSCEEEEESSSCEEEECGGGG
T ss_pred CcCEEEEECCCCeEEeCCCcc
Confidence 999988887778888987653
No 249
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=95.36 E-value=1.8 Score=40.41 Aligned_cols=187 Identities=11% Similarity=0.088 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEeeCCCe
Q psy12356 14 DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQS 93 (400)
Q Consensus 14 dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss~D~t 93 (400)
++..|..++.++.|..+|..+++. +-.+...... ...... . ++.+++++.++.
T Consensus 102 ~~~~v~v~~~~g~l~a~d~~tG~~-----------~W~~~~~~~~------------~~~p~~-~---~~~v~v~~~~g~ 154 (376)
T 3q7m_A 102 SGGHVYIGSEKAQVYALNTSDGTV-----------AWQTKVAGEA------------LSRPVV-S---DGLVLIHTSNGQ 154 (376)
T ss_dssp ETTEEEEEETTSEEEEEETTTCCE-----------EEEEECSSCC------------CSCCEE-E---TTEEEEECTTSE
T ss_pred eCCEEEEEcCCCEEEEEECCCCCE-----------EEEEeCCCce------------EcCCEE-E---CCEEEEEcCCCe
Confidence 455677788899999999876531 1111111100 000111 1 236777788999
Q ss_pred EEEEEccCCCcc---cccccE------EEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceece-e
Q psy12356 94 FNIVDIKPTNME---ELNEVI------TAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGL-I 163 (400)
Q Consensus 94 I~lWd~~~~~~~---~~~~~V------~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~-~ 163 (400)
+..+|.++|+.. .....+ .+.... + ..+..++.++.+..+|.++++..-......... ......+ .
T Consensus 155 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~-~~~~~~~~~ 230 (376)
T 3q7m_A 155 LQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATG-STEIDRLSD 230 (376)
T ss_dssp EEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC------------C
T ss_pred EEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCC-Ccccccccc
Confidence 999999888731 111111 112222 2 356667789999999998885421100000000 0000000 0
Q ss_pred ccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEEEec
Q psy12356 164 VPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISRD 243 (400)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~las~~ 243 (400)
+. ......++.... ++.++.+..+|.++++.. +..+ ......+... ++++.+++.
T Consensus 231 ~~-----~~p~~~~~~v~~-~~~~g~l~~~d~~tG~~~------w~~~------------~~~~~~~~~~-~~~l~~~~~ 285 (376)
T 3q7m_A 231 VD-----TTPVVVNGVVFA-LAYNGNLTALDLRSGQIM------WKRE------------LGSVNDFIVD-GNRIYLVDQ 285 (376)
T ss_dssp CC-----CCCEEETTEEEE-ECTTSCEEEEETTTCCEE------EEEC------------CCCEEEEEEE-TTEEEEEET
T ss_pred cC-----CCcEEECCEEEE-EecCcEEEEEECCCCcEE------eecc------------CCCCCCceEE-CCEEEEEcC
Confidence 00 000001122222 235788999998876531 1111 1122333332 555556677
Q ss_pred CCeEEEEeCCCCC
Q psy12356 244 YLCVKVWDLHMES 256 (400)
Q Consensus 244 D~tIklWD~~~~~ 256 (400)
++.+..+|..++.
T Consensus 286 ~g~l~~~d~~tG~ 298 (376)
T 3q7m_A 286 NDRVMALTIDGGV 298 (376)
T ss_dssp TCCEEEEETTTCC
T ss_pred CCeEEEEECCCCc
Confidence 8899999999874
No 250
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=95.28 E-value=0.11 Score=50.86 Aligned_cols=112 Identities=14% Similarity=0.089 Sum_probs=69.0
Q ss_pred EEEECCCCCeEEEec-------------------CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhccccccc
Q psy12356 8 ASQRFSDGELLATGD-------------------KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIE 68 (400)
Q Consensus 8 ~v~fspdG~~Las~s-------------------~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 68 (400)
.+.|+|+++.+++.. .+.+|.+||+.+. +.++++.--.. .
T Consensus 192 d~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~-----------k~~~tI~vg~~----------g 250 (462)
T 2ece_A 192 DFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR-----------KRIHSLTLGEE----------N 250 (462)
T ss_dssp CEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT-----------EEEEEEESCTT----------E
T ss_pred eEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC-----------cEeeEEecCCC----------C
Confidence 467899999988885 3689999999853 23333332100 0
Q ss_pred ceeeEEEE--EeccCCceEEEee-----CCCeEEEEEccCCCcc-------------c-c----------cccEEEEEEe
Q psy12356 69 EKINKIRW--LRRKNQAHFLLST-----NDQSFNIVDIKPTNME-------------E-L----------NEVITAAEFH 117 (400)
Q Consensus 69 ~~V~~v~~--sp~~~~~~~l~ss-----~D~tI~lWd~~~~~~~-------------~-~----------~~~V~sv~f~ 117 (400)
.....|+| +|++. ..++++- -+++|.+|..+.+... . + ......+.++
T Consensus 251 ~~P~~i~f~~~Pdg~-~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS 329 (462)
T 2ece_A 251 RMALELRPLHDPTKL-MGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS 329 (462)
T ss_dssp EEEEEEEECSSTTCC-EEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred CccceeEeeECCCCC-EEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence 12445666 77763 1233344 5667866555443210 0 0 1235788999
Q ss_pred cCCCCEEEEEeCCCeEEEEecccc
Q psy12356 118 PIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 118 p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
|||..++++.-..+.|.++|+...
T Consensus 330 ~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 330 LDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp TTSCEEEEEETTTTEEEEEECSST
T ss_pred CCCCEEEEEeCCCCEEEEEEecCC
Confidence 998666676666899999998643
No 251
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=95.27 E-value=0.49 Score=46.05 Aligned_cols=111 Identities=17% Similarity=0.196 Sum_probs=60.8
Q ss_pred eEEEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
....|+|+| ++..|..+...+.|+.+|..+.. +..+.... .....|+|.++++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~------------v~~~~~~~------------~~P~~ia~d~~G~-- 191 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY------------VSTVYSGL------------SKVRTICWTHEAD-- 191 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE------------EEEEECCC------------SCEEEEEECTTSS--
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE------------EEEEecCC------------CCcceEEEeCCCC--
Confidence 356889998 45555555555889999987421 12222111 2367899988763
Q ss_pred eEEEeeC-CC---eEEEEEccCCCcc---cc--cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 84 HFLLSTN-DQ---SFNIVDIKPTNME---EL--NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss~-D~---tI~lWd~~~~~~~---~~--~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+.++.. ++ ...+|....+.+. .+ .....+++++|+++.++++-..++.|..+|..++
T Consensus 192 ~lyvad~~~~~~~~~v~~~~~~g~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~ 258 (430)
T 3tc9_A 192 SMIITNDQNNNDRPNNYILTRESGFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQ 258 (430)
T ss_dssp EEEEEECCSCTTSEEEEEEEGGGTSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTT
T ss_pred EEEEEeCCCCcccceEEEEeCCCceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC
Confidence 4555432 11 2223333333322 11 1123567788854566666666677777776544
No 252
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=95.20 E-value=0.6 Score=42.26 Aligned_cols=155 Identities=9% Similarity=0.046 Sum_probs=87.3
Q ss_pred eeEEEEEeccCCceEEEeeCCC--eEEEEEccCCCcc-c--ccccE--EEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 71 INKIRWLRRKNQAHFLLSTNDQ--SFNIVDIKPTNME-E--LNEVI--TAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~ss~D~--tI~lWd~~~~~~~-~--~~~~V--~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
...+.|+ ++ ..+.+++.++ .|+..|+++++.. . ..... -++++. ++.+++..-.++.+.++|..+.++
T Consensus 45 tqGL~~~-~~--~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~ 119 (262)
T 3nol_A 45 TEGFFYR-NG--YFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQ 119 (262)
T ss_dssp EEEEEEE-TT--EEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCE
T ss_pred cceEEEE-CC--EEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcE
Confidence 4567887 43 2444556555 9999999999842 1 12222 234443 446677766799999999998865
Q ss_pred cccccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCccccccc
Q psy12356 144 CDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEI 223 (400)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 223 (400)
..++.- . ...+++.. .......+. .++.|.++|..+.+.... +..-. .+.
T Consensus 120 ~~ti~~---~---~eG~glt~-----------dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~-I~V~~-----------~g~ 169 (262)
T 3nol_A 120 VRSFNY---D---GEGWGLTH-----------NDQYLIMSD-GTPVLRFLDPESLTPVRT-ITVTA-----------HGE 169 (262)
T ss_dssp EEEEEC---S---SCCCCEEE-----------CSSCEEECC-SSSEEEEECTTTCSEEEE-EECEE-----------TTE
T ss_pred EEEEEC---C---CCceEEec-----------CCCEEEEEC-CCCeEEEEcCCCCeEEEE-EEecc-----------CCc
Confidence 432210 0 01122211 122233333 267899999887543211 11100 000
Q ss_pred -ccCeEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeee
Q psy12356 224 -ISSISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 224 -~~~V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~ 262 (400)
...++.+.|. +|++.|.. .+.+|.+.|.+++. .+..+
T Consensus 170 ~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~-V~~~I 208 (262)
T 3nol_A 170 ELPELNELEWV-DGEIFANVWQTNKIVRIDPETGK-VTGII 208 (262)
T ss_dssp ECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCB-EEEEE
T ss_pred cccccceeEEE-CCEEEEEEccCCeEEEEECCCCc-EEEEE
Confidence 1234567776 88877765 46899999999874 45555
No 253
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.19 E-value=0.056 Score=56.15 Aligned_cols=51 Identities=8% Similarity=0.035 Sum_probs=36.7
Q ss_pred CeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 92 QSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 92 ~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
++|..||+.+|+.. .+...+.+..+.+.+ .+++.++.|+.++.||+++++.
T Consensus 457 g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~~g-~~v~~g~~dg~l~a~D~~tG~~ 510 (677)
T 1kb0_A 457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAG-NVVFQGTADGRLVAYHAATGEK 510 (677)
T ss_dssp EEEEEEETTTTEEEEEEEESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred cEEEEEeCCCCcEEeecCCCCCCcCcceEeCC-CEEEEECCCCcEEEEECCCCce
Confidence 78999999988731 222233444566655 5677788999999999999954
No 254
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.17 E-value=2.1 Score=40.14 Aligned_cols=26 Identities=27% Similarity=0.518 Sum_probs=21.4
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEE
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQ 31 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd 31 (400)
....++|.|||+++++ ..+|.|++++
T Consensus 32 ~P~~ia~~pdG~l~V~-e~~g~I~~i~ 57 (352)
T 2ism_A 32 VPWALAFLPDGGMLIA-ERPGRIRLFR 57 (352)
T ss_dssp CEEEEEECTTSCEEEE-ETTTEEEEEE
T ss_pred CceEEEEcCCCeEEEE-eCCCeEEEEE
Confidence 4678999999996665 4569999998
No 255
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=94.86 E-value=0.24 Score=45.06 Aligned_cols=110 Identities=9% Similarity=0.135 Sum_probs=72.0
Q ss_pred EECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceEEEee
Q psy12356 10 QRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLST 89 (400)
Q Consensus 10 ~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~l~ss 89 (400)
.+++||++|..+..+++|.++|..+.+ ..+++.--... . .-..++.+.|. ++ ++.+..
T Consensus 111 glt~Dg~~l~vs~gs~~l~viD~~t~~-----------v~~~I~Vg~~~-~------p~~~~nele~~-dg---~lyvn~ 168 (266)
T 2iwa_A 111 GLATDGKILYGSDGTSILYEIDPHTFK-----------LIKKHNVKYNG-H------RVIRLNELEYI-NG---EVWANI 168 (266)
T ss_dssp EEEECSSSEEEECSSSEEEEECTTTCC-----------EEEEEECEETT-E------ECCCEEEEEEE-TT---EEEEEE
T ss_pred EEEECCCEEEEECCCCeEEEEECCCCc-----------EEEEEEECCCC-c------ccccceeEEEE-CC---EEEEec
Confidence 467788877777778889999987532 23333211000 0 00125667776 43 454543
Q ss_pred -CCCeEEEEEccCCCccc---cc--------------ccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 90 -NDQSFNIVDIKPTNMEE---LN--------------EVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 90 -~D~tI~lWd~~~~~~~~---~~--------------~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+++|.+-|.++++... .. ...++++|+|+++.+|+++.....+..-|+...
T Consensus 169 ~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 169 WQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp TTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred CCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 57899999999987311 11 245899999998788888888899988888765
No 256
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.75 E-value=4.7 Score=42.00 Aligned_cols=110 Identities=8% Similarity=0.105 Sum_probs=61.8
Q ss_pred eeEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 4 ~~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
..|.++...++|++.+ |..++-+..+|..+++ . ..+.... + ....|.++...++ +
T Consensus 407 ~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~---------~---~~~~~~~-----~----~~~~v~~i~~d~~---g 461 (781)
T 3v9f_A 407 NSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKK---------F---QIIELEK-----N----ELLDVRVFYEDKN---K 461 (781)
T ss_dssp SBEEEEEECTTSCEEE-EETTEEEEEECSSSCE---------E---EECCSTT-----T----CCCCEEEEEECTT---S
T ss_pred cceEEEEECCCCCEEE-EeccCCEEEEcCCCCc---------E---EEeccCC-----C----CCCeEEEEEECCC---C
Confidence 3578888888887666 5555668888865421 1 1111000 0 0123666665443 3
Q ss_pred eEEEeeCCCeEEEEEccCCCcccc---------cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEEL---------NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~~---------~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+..++. +-+..+|.+++.+... ...|.++...+++ .+.+....+| +..+|..++
T Consensus 462 ~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g-~lWigt~~~G-l~~~~~~~~ 525 (781)
T 3v9f_A 462 KIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEG-RFWIGTFGGG-VGIYTPDMQ 525 (781)
T ss_dssp EEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTC-CEEEEESSSC-EEEECTTCC
T ss_pred CEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCC-CEEEEEcCCC-EEEEeCCCC
Confidence 6666665 4577888877654211 2458888888764 5554433344 555675544
No 257
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=94.65 E-value=0.25 Score=47.16 Aligned_cols=69 Identities=7% Similarity=-0.014 Sum_probs=49.5
Q ss_pred EEEEeccCCceEEEe-e---C-----CCeEEEEEccCCCc-ccc--cccEEEEEEecCCCCEEEEEe-CCCeEEEEeccc
Q psy12356 74 IRWLRRKNQAHFLLS-T---N-----DQSFNIVDIKPTNM-EEL--NEVITAAEFHPIDCNLFVYSS-SKGTIRLCDMRA 140 (400)
Q Consensus 74 v~~sp~~~~~~~l~s-s---~-----D~tI~lWd~~~~~~-~~~--~~~V~sv~f~p~~~~~las~s-~Dg~i~lWD~~~ 140 (400)
++++|++. ++.++ . . +..+.++|+++++. ..+ .....+++|+|++..++++.. .+++|.++|+.+
T Consensus 269 v~~s~dg~--~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t 346 (368)
T 1mda_H 269 VAKLKNTD--GIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS 346 (368)
T ss_dssp EEEETTTT--EEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSS
T ss_pred eEEcCCCC--EEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCC
Confidence 67999874 55543 3 2 23556999998873 222 235678999999766788888 699999999999
Q ss_pred cccc
Q psy12356 141 AALC 144 (400)
Q Consensus 141 ~~~~ 144 (400)
.+.+
T Consensus 347 ~kvv 350 (368)
T 1mda_H 347 DQDQ 350 (368)
T ss_dssp CEEE
T ss_pred CcEE
Confidence 8543
No 258
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=94.49 E-value=2.7 Score=38.16 Aligned_cols=109 Identities=16% Similarity=0.150 Sum_probs=59.1
Q ss_pred eEEEEEECCCCCeEEEecCCC--eEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 5 MREASQRFSDGELLATGDKGG--RVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
.+..++|+|||+++++..... .|..++..+++ .+.+..+... .....++..+.
T Consensus 73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~---------~~~~~~~~~~-------------~~~~g~~~~~~--- 127 (306)
T 2p4o_A 73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGT---------VETLLTLPDA-------------IFLNGITPLSD--- 127 (306)
T ss_dssp EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSC---------EEEEEECTTC-------------SCEEEEEESSS---
T ss_pred CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCe---------EEEEEeCCCc-------------cccCcccccCC---
Confidence 567899999999777654332 46666655432 1111111000 01122333222
Q ss_pred ceEEEe-eCCCeEEEEEccCCC--cc---------cc-c--ccEEEEEEecCCCCEEEEEeCCCeEEEEeccc
Q psy12356 83 AHFLLS-TNDQSFNIVDIKPTN--ME---------EL-N--EVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 83 ~~~l~s-s~D~tI~lWd~~~~~--~~---------~~-~--~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~ 140 (400)
..++++ ..++.|..+|..++. .. .. . ...+.+ +|+++.++++-...+.|..+|+..
T Consensus 128 ~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~ 198 (306)
T 2p4o_A 128 TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDS 198 (306)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCT
T ss_pred CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCC
Confidence 244444 357777777765431 10 00 1 124555 787666777777789999999875
No 259
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=94.42 E-value=0.62 Score=42.38 Aligned_cols=132 Identities=7% Similarity=-0.103 Sum_probs=67.3
Q ss_pred eEEEeeCCCeEEEEEccCCCc----ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccce
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNM----EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~----~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
.+.+++ +.+..+| .+++. ......+.++.+.+++ .+ ..++.++.|..+|...... .... . .....
T Consensus 189 ~l~v~t--~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g-~l-~v~t~~~gl~~~~~~g~~~-~~~~----~-~~~~~ 257 (330)
T 3hxj_A 189 TIYFGS--DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDG-TI-YVTSLDGHLYAINPDGTEK-WRFK----T-GKRIE 257 (330)
T ss_dssp CEEEES--SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTS-CE-EEEETTTEEEEECTTSCEE-EEEE----C-SSCCC
T ss_pred EEEEEe--CEEEEEC-CCCcEEEEEccCCcceeceEECCCC-eE-EEEcCCCeEEEECCCCCEe-EEee----C-CCCcc
Confidence 455555 7788888 55542 1112346677777764 44 4456677777777533311 1000 0 00000
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
.... ...++.... ++.+|.+..+|. ++... ..+. .....+.++...++|++.
T Consensus 258 ~~~~----------~~~~g~l~v-~t~~ggl~~~d~-~g~~~----~~~~------------~~~~~~~~~~~d~~g~l~ 309 (330)
T 3hxj_A 258 SSPV----------IGNTDTIYF-GSYDGHLYAINP-DGTEK----WNFE------------TGSWIIATPVIDENGTIY 309 (330)
T ss_dssp SCCE----------ECTTSCEEE-ECTTCEEEEECT-TSCEE----EEEE------------CSSCCCSCCEECTTCCEE
T ss_pred ccce----------EcCCCeEEE-ecCCCCEEEECC-CCcEE----EEEE------------cCCccccceEEcCCCEEE
Confidence 0000 011222222 235677888885 33221 1111 012346677788999999
Q ss_pred EEecCCeEEEEeCCC
Q psy12356 240 ISRDYLCVKVWDLHM 254 (400)
Q Consensus 240 as~~D~tIklWD~~~ 254 (400)
+++.+|.+++-..+.
T Consensus 310 ~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 310 FGTRNGKFYALFNLE 324 (330)
T ss_dssp EECTTSCEEEEEC--
T ss_pred EEcCCCeEEEEeccc
Confidence 988899998877664
No 260
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=94.33 E-value=2.8 Score=37.63 Aligned_cols=118 Identities=11% Similarity=0.243 Sum_probs=69.8
Q ss_pred EEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeee-ccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 7 EASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 7 ~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
-.|++.++|.++++.-.++.+.++++.... ....+.... ... ..........|+|.|.++ ++
T Consensus 73 EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~--------~i~~~~~~~~~~~-------~~~~N~g~EGLA~d~~~~--~L 135 (255)
T 3qqz_A 73 ETIEYIGDNQFVISDERDYAIYVISLTPNS--------EVKILKKIKIPLQ-------ESPTNCGFEGLAYSRQDH--TF 135 (255)
T ss_dssp EEEEECSTTEEEEEETTTTEEEEEEECTTC--------CEEEEEEEECCCS-------SCCCSSCCEEEEEETTTT--EE
T ss_pred HHeEEeCCCEEEEEECCCCcEEEEEcCCCC--------eeeeeeeeccccc-------cccccCCcceEEEeCCCC--EE
Confidence 367888899887776677899999987542 111111111 000 001123467899999763 56
Q ss_pred EEeeCCCeEEEEEccC----CCccc----------ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 86 LLSTNDQSFNIVDIKP----TNMEE----------LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~----~~~~~----------~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.++.......||.++. ..+.. ....+.+++|+|..+.+++.+...+.+-..|....
T Consensus 136 ~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~ 205 (255)
T 3qqz_A 136 WFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE 205 (255)
T ss_dssp EEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC
T ss_pred EEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC
Confidence 6554433445555431 11110 01236789999988778888777888888886543
No 261
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=94.30 E-value=3.3 Score=38.75 Aligned_cols=107 Identities=10% Similarity=0.072 Sum_probs=60.6
Q ss_pred EEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEE---EeccCC
Q psy12356 7 EASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRW---LRRKNQ 82 (400)
Q Consensus 7 ~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~---sp~~~~ 82 (400)
-+++|.+ +|.++++.-..++|..|+..++. ...+ .+.+=+.+ ......+..|.| -|++
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~---------~~~~-~~~~~s~~------g~~~~~~sGl~~~~~D~~g-- 77 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS---------HFNV-VIDGASSN------GDGEQQMSGLSLLTHDNSK-- 77 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCC---------EEEE-CCTTTCCS------SCCSEEEEEEEESSSSSCC--
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCe---------EEEE-ecCCcccc------CCCcceeeEEEEeccCCCC--
Confidence 3678977 56666666579999999986432 1111 22210000 000012456778 3543
Q ss_pred ceEEEeeC--------------CCeEEEEEcc---CCCcc---cc---c-----------ccEEEEEEecCCCCEEEEEe
Q psy12356 83 AHFLLSTN--------------DQSFNIVDIK---PTNME---EL---N-----------EVITAAEFHPIDCNLFVYSS 128 (400)
Q Consensus 83 ~~~l~ss~--------------D~tI~lWd~~---~~~~~---~~---~-----------~~V~sv~f~p~~~~~las~s 128 (400)
++++... +..+..+|+. +++.. .+ . ...+.++..++| +.+++++
T Consensus 78 -rL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~G-naYVt~s 155 (334)
T 2p9w_A 78 -RLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDG-NSYVAFA 155 (334)
T ss_dssp -EEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTS-CEEEEEE
T ss_pred -cEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCC-CEEEeCC
Confidence 5554322 5678889998 66521 11 1 237789999975 7778777
Q ss_pred CC-CeE
Q psy12356 129 SK-GTI 133 (400)
Q Consensus 129 ~D-g~i 133 (400)
.- +.|
T Consensus 156 ~~~~~I 161 (334)
T 2p9w_A 156 LGMPAI 161 (334)
T ss_dssp ESSCEE
T ss_pred CCCCeE
Confidence 65 554
No 262
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=94.20 E-value=0.38 Score=46.71 Aligned_cols=108 Identities=12% Similarity=0.151 Sum_probs=64.5
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCC--CcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKR--GEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
.|.-+..||+|++||..+ +..|.|-.+..+........ ...+ .++++-.. . .......|..+.|+|-+..
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q-~~ty~l~~-----~-~~~~~s~I~qVlWHPl~~~ 138 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQ-IFHYSIDE-----E-EVGPKSSIKKVLFHPKSYR 138 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTE-EEEEEGGG-----C-C--CCCCEEEEEECTTBGG
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccc-eeEEEcCC-----c-ccCCCCceeEEEeccccCC
Confidence 677789999999999885 66899999874321100000 0111 11222110 0 0112356999999998753
Q ss_pred -ceEEEeeCCCeEEEEEccCCC-----ccc----c-----cccEEEEEEecCC
Q psy12356 83 -AHFLLSTNDQSFNIVDIKPTN-----MEE----L-----NEVITAAEFHPID 120 (400)
Q Consensus 83 -~~~l~ss~D~tI~lWd~~~~~-----~~~----~-----~~~V~sv~f~p~~ 120 (400)
..+++=..|++||+||+.... +.. . ...|.+++|.+++
T Consensus 139 ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~ 191 (452)
T 3pbp_A 139 DSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDG 191 (452)
T ss_dssp GCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTS
T ss_pred CCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCC
Confidence 455556789999999997632 110 0 1357788888854
No 263
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=94.20 E-value=2.5 Score=38.28 Aligned_cols=156 Identities=9% Similarity=0.013 Sum_probs=89.5
Q ss_pred eeEEEEEeccCCceEEEeeCCCeEEEEEccCCCcc-c-ccccE--EEEEEecCCCCEEEEEeCCCeEEEEeccccccccc
Q psy12356 71 INKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNME-E-LNEVI--TAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDR 146 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~~~-~-~~~~V--~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~ 146 (400)
...+.|+. +..+.+++.++.|+..|+++++.. . +.... -++++. ++.+++..-.++.+.++|..+.++..+
T Consensus 57 tqGL~~~~---~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~t 131 (268)
T 3nok_A 57 TQGLVFHQ---GHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRERT 131 (268)
T ss_dssp EEEEEEET---TEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEEE
T ss_pred cceEEEEC---CEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEEE
Confidence 45677762 224555677889999999998842 1 22222 235544 456777777799999999998865433
Q ss_pred ccceeccCcccceeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccC
Q psy12356 147 HSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISS 226 (400)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 226 (400)
+.- . ...|++.. .......+. .++.|.++|..+.+.... +..-..+ .....
T Consensus 132 i~~---~---~eGwGLt~-----------Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~-I~V~~~g----------~~v~~ 182 (268)
T 3nok_A 132 TRY---S---GEGWGLCY-----------WNGKLVRSD-GGTMLTFHEPDGFALVGA-VQVKLRG----------QPVEL 182 (268)
T ss_dssp EEC---S---SCCCCEEE-----------ETTEEEEEC-SSSEEEEECTTTCCEEEE-EECEETT----------EECCC
T ss_pred EeC---C---CceeEEec-----------CCCEEEEEC-CCCEEEEEcCCCCeEEEE-EEeCCCC----------ccccc
Confidence 210 0 01122211 112233333 378999999887653211 1110000 00124
Q ss_pred eEEEEECCCCcEEEEe-cCCeEEEEeCCCCCCceeee
Q psy12356 227 ISDVKISNSGRYMISR-DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 227 V~~v~fSpdg~~las~-~D~tIklWD~~~~~~~l~~~ 262 (400)
++.+.|. +|++.|.. .+..|.+-|.+++. .+..+
T Consensus 183 lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~-V~~~I 217 (268)
T 3nok_A 183 INELECA-NGVIYANIWHSSDVLEIDPATGT-VVGVI 217 (268)
T ss_dssp EEEEEEE-TTEEEEEETTCSEEEEECTTTCB-EEEEE
T ss_pred ccccEEe-CCEEEEEECCCCeEEEEeCCCCc-EEEEE
Confidence 5667776 88777765 46799999999864 45554
No 264
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.02 E-value=0.1 Score=54.27 Aligned_cols=52 Identities=10% Similarity=0.077 Sum_probs=36.8
Q ss_pred CCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 91 DQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 91 D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
+++|+.||+.+|+.. .+...+.+..+...+ .+++.++.|+.++.||.+++++
T Consensus 454 ~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-glvf~gt~dg~l~a~D~~tG~~ 508 (689)
T 1yiq_A 454 SGKLIAWDPVKQQAAWEVPYVTIFNGGTLSTAG-NLVFEGSADGRVIAYAADTGEK 508 (689)
T ss_dssp EEEEEEEETTTTEEEEEEEESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred ceeEEEEECCCCCeEeEccCCCCccCccceECC-CEEEEECCCCcEEEEECCCCcc
Confidence 478999999998731 112223333455554 5778889999999999999954
No 265
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=93.99 E-value=1.8 Score=40.12 Aligned_cols=101 Identities=8% Similarity=0.196 Sum_probs=53.3
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+.++.|+|+|.++|.+...+-.+-+|-. +. ..+.+. .... ..+..+.+.|++ .
T Consensus 164 ~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~--------tW~~~~--~~~~------------~~~~~~~~~~~g---~ 217 (327)
T 2xbg_A 164 VMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QT--------AWEPHN--RTTS------------RRLHNMGFTPDG---R 217 (327)
T ss_dssp CEEEEEECTTSCEEEEETTSSEEEEECTT-CS--------SCEEEE--CCSS------------SCEEEEEECTTS---C
T ss_pred ceEEEEEcCCCcEEEEECCCcEEEEeCCC-CC--------ceeECC--CCCC------------CccceeEECCCC---C
Confidence 46788999999988877544333323321 11 111111 0111 236677777654 5
Q ss_pred EEEeeCCCeEEEEEccCCC----cc-c-c--cccEEEEEEecCCCCEEEEEeCCCeE
Q psy12356 85 FLLSTNDQSFNIVDIKPTN----ME-E-L--NEVITAAEFHPIDCNLFVYSSSKGTI 133 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~----~~-~-~--~~~V~sv~f~p~~~~~las~s~Dg~i 133 (400)
+.+.+.++.+++++.+.|+ .. . . ...+.++.|.|+ +.+++.+ .++.|
T Consensus 218 ~~~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~-~~~~~~g-~~g~i 272 (327)
T 2xbg_A 218 LWMIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTP-NEVWLAG-GAGAL 272 (327)
T ss_dssp EEEEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSS-SCEEEEE-STTCE
T ss_pred EEEEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCC-CEEEEEe-CCCeE
Confidence 6666667887777433222 11 1 1 124778888875 3555544 45654
No 266
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=93.37 E-value=6.1 Score=38.22 Aligned_cols=67 Identities=12% Similarity=0.085 Sum_probs=43.2
Q ss_pred eeEEEEEeccCCceEEEe-eCCCeEEEEEccCCCc-ccc-----cccEEEEEEecCCCCEEEEEeCCCeEEEEecc
Q psy12356 71 INKIRWLRRKNQAHFLLS-TNDQSFNIVDIKPTNM-EEL-----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMR 139 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~s-s~D~tI~lWd~~~~~~-~~~-----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~ 139 (400)
...+++.|+. +.+..+ ..++.|+.+|.+++.. ... ...-..++|+|++..++++-...+.|+.+|..
T Consensus 230 P~giavd~~~--G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 230 AKTCAVHPQN--GKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp BCCCEECTTT--CCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred CCEEEEeCCC--CeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 3457777732 244444 4577888888876653 111 11224699999874477777778899998865
No 267
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=92.94 E-value=2.1 Score=39.92 Aligned_cols=58 Identities=3% Similarity=0.043 Sum_probs=39.3
Q ss_pred ceEEEeeCCCeEEEEEccCCCcc--cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 83 AHFLLSTNDQSFNIVDIKPTNME--ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 83 ~~~l~ss~D~tI~lWd~~~~~~~--~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
+.+.+++.++.+..+|.++|+.. .......++... + ..+..++.++.|..+|..+++.
T Consensus 240 ~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~--~-~~l~~~~~~g~l~~~d~~tG~~ 299 (376)
T 3q7m_A 240 GVVFALAYNGNLTALDLRSGQIMWKRELGSVNDFIVD--G-NRIYLVDQNDRVMALTIDGGVT 299 (376)
T ss_dssp TEEEEECTTSCEEEEETTTCCEEEEECCCCEEEEEEE--T-TEEEEEETTCCEEEEETTTCCE
T ss_pred CEEEEEecCcEEEEEECCCCcEEeeccCCCCCCceEE--C-CEEEEEcCCCeEEEEECCCCcE
Confidence 36777778899999999888732 111223344443 3 3566677889999999998853
No 268
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=92.62 E-value=6.2 Score=36.32 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=22.4
Q ss_pred cCeEEEEECCCCcEEEEecCCeEEEEe
Q psy12356 225 SSISDVKISNSGRYMISRDYLCVKVWD 251 (400)
Q Consensus 225 ~~V~~v~fSpdg~~las~~D~tIklWD 251 (400)
..+..++++|++++++.+.++.+++++
T Consensus 205 ~~~~~~~~~~~g~~~~~~~~G~~~~s~ 231 (327)
T 2xbg_A 205 RRLHNMGFTPDGRLWMIVNGGKIAFSD 231 (327)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred CccceeEECCCCCEEEEeCCceEEEec
Confidence 467889999999988877788888774
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=91.96 E-value=1.2 Score=43.11 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=44.8
Q ss_pred eeEEEEEeccCCceEEEe-eCCCeEEEEEccCCCccc---c--cccEEEEEEecCCCCEEEEEeCCCeEEEEeccc
Q psy12356 71 INKIRWLRRKNQAHFLLS-TNDQSFNIVDIKPTNMEE---L--NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~s-s~D~tI~lWd~~~~~~~~---~--~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~ 140 (400)
...+++.|+. +.+.++ ..++.|..+|.+++.... . ...-+.++|+|++..++++-...+.|..+|...
T Consensus 228 p~giavdp~~--g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 228 CNGAETHPIN--GELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CCCEEECTTT--CCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEeCCC--CEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 4567888832 245544 457788899987654311 1 123468999998643677777788999988764
No 270
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=91.50 E-value=3.2 Score=42.68 Aligned_cols=60 Identities=8% Similarity=0.080 Sum_probs=35.8
Q ss_pred CCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE-EecCCeEEEEeCCCCCCceeeec
Q psy12356 186 RKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI-SRDYLCVKVWDLHMESRPVETYP 263 (400)
Q Consensus 186 ~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la-s~~D~tIklWD~~~~~~~l~~~~ 263 (400)
.+|.|.-||+++++.. |..+ +..++....+...|.++. ++.|+.++.||.+++. .+..++
T Consensus 436 ~~g~l~A~D~~tG~~~------W~~~-----------~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~-~l~~~~ 496 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAA------WKVP-----------YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE-ALWQFE 496 (668)
T ss_dssp CEEEEEEEETTTTEEE------EEEE-----------ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEE
T ss_pred ccceEEEEeCCCCcEE------EEcc-----------CCCCCcCceeEeCCCEEEEECCcccchhhhhhcCh-hheEec
Confidence 4588999999887642 2110 001122223334555555 4568999999999874 566664
No 271
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=91.12 E-value=10 Score=35.70 Aligned_cols=30 Identities=20% Similarity=0.347 Sum_probs=23.3
Q ss_pred CeEEEEECCCCcEEE-E-ecCCeEEEEeCCCC
Q psy12356 226 SISDVKISNSGRYMI-S-RDYLCVKVWDLHME 255 (400)
Q Consensus 226 ~V~~v~fSpdg~~la-s-~~D~tIklWD~~~~ 255 (400)
.-+.++|||||++|. + +..+.|..||+...
T Consensus 222 ~pNGia~spDg~~lYvadt~~~~I~~~~~~~~ 253 (355)
T 3sre_A 222 FANGINISPDGKYVYIAELLAHKIHVYEKHAN 253 (355)
T ss_dssp SEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred ccCcceECCCCCEEEEEeCCCCeEEEEEECCC
Confidence 457899999998765 3 45689999998743
No 272
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=90.87 E-value=5.5 Score=40.66 Aligned_cols=27 Identities=11% Similarity=0.358 Sum_probs=22.2
Q ss_pred EEEECCCCCeEEEecC-CCeEEEEEcCC
Q psy12356 8 ASQRFSDGELLATGDK-GGRVVIFQRDP 34 (400)
Q Consensus 8 ~v~fspdG~~Las~s~-Dg~I~iwd~~~ 34 (400)
++++.++|++++.|+. +.++.+||..+
T Consensus 247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t 274 (656)
T 1k3i_A 247 GISMDGNGQIVVTGGNDAKKTSLYDSSS 274 (656)
T ss_dssp EEEECTTSCEEEECSSSTTCEEEEEGGG
T ss_pred cccCCCCCCEEEeCCCCCCceEEecCcC
Confidence 4678899999999984 56899999765
No 273
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=90.01 E-value=13 Score=35.09 Aligned_cols=202 Identities=10% Similarity=0.044 Sum_probs=103.4
Q ss_pred eEEEEEECCCCC-eEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGE-LLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~-~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..++|++.++ +..+-...+.|+.++.++.. ...+..... .....+++.+.+. .
T Consensus 117 ~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~------------~~~~~~~~~-----------~~p~glavd~~~g-~ 172 (386)
T 3v65_B 117 NAIALDFHHRRELVFWSDVTLDRILRANLNGSN------------VEEVVSTGL-----------ESPGGLAVDWVHD-K 172 (386)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCC------------EEEEECSSC-----------SCCCCEEEETTTT-E
T ss_pred ccEEEEEecCCCeEEEEeCCCCcEEEEecCCCC------------cEEEEeCCC-----------CCccEEEEEeCCC-e
Confidence 356789997554 44454567889889887431 111111100 1134567765432 2
Q ss_pred eEEEeeCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCC-CeEEEEecccccccccccceeccCcccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSK-GTIRLCDMRAAALCDRHSKCLIEGTNCN 158 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~D-g~i~lWD~~~~~~~~~~~~~~~~~~~~~ 158 (400)
.+++-...+.|.+.+++......+ ...-++++++|.++.++.+-... +.|...++...... .+.......
T Consensus 173 lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-----~~~~~~~~~ 247 (386)
T 3v65_B 173 LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-----IIADTHLFW 247 (386)
T ss_dssp EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-----EEECSSCSC
T ss_pred EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-----EEEECCCCC
Confidence 333445567888888765432111 13457899999877777766555 78888887654210 010000001
Q ss_pred eeceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcE
Q psy12356 159 CQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRY 238 (400)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~ 238 (400)
..++.+. ...+....+....+.|..+|+.... .+.+. ......-..|++ .++.+
T Consensus 248 PnGlavd---------~~~~~lY~aD~~~~~I~~~d~dG~~-----~~~~~-----------~~~~~~P~giav-~~~~l 301 (386)
T 3v65_B 248 PNGLTID---------YAGRRMYWVDAKHHVIERANLDGSH-----RKAVI-----------SQGLPHPFAITV-FEDSL 301 (386)
T ss_dssp EEEEEEE---------GGGTEEEEEETTTTEEEEECTTSCS-----CEEEE-----------CSSCSSEEEEEE-ETTEE
T ss_pred eeeEEEe---------CCCCEEEEEECCCCEEEEEeCCCCe-----eEEEE-----------ECCCCCceEEEE-ECCEE
Confidence 1122222 0123333344456788888875321 01111 011123456777 34455
Q ss_pred EEE-ecCCeEEEEeCCCCCCceeee
Q psy12356 239 MIS-RDYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 239 las-~~D~tIklWD~~~~~~~l~~~ 262 (400)
..+ ...+.|...|..++. .++.+
T Consensus 302 y~td~~~~~V~~~~~~~G~-~~~~i 325 (386)
T 3v65_B 302 YWTDWHTKSINSANKFTGK-NQEII 325 (386)
T ss_dssp EEEETTTTEEEEEETTTCC-SCEEE
T ss_pred EEeeCCCCeEEEEECCCCc-ceEEE
Confidence 555 356888888865553 34444
No 274
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=88.81 E-value=15 Score=34.13 Aligned_cols=153 Identities=12% Similarity=0.112 Sum_probs=85.0
Q ss_pred eeEEEEEeccCCceEEEe-eCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccc
Q psy12356 71 INKIRWLRRKNQAHFLLS-TNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCD 145 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~s-s~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~ 145 (400)
+..++|.+... .+..+ ...+.|..++++++..... .....++++++.+++++.+-...+.|.+.++......
T Consensus 75 ~~~l~~d~~~~--~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~- 151 (349)
T 3v64_C 75 AIALDFHHRRE--LVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK- 151 (349)
T ss_dssp EEEEEEETTTT--EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-
T ss_pred eEEEEEecccc--EEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE-
Confidence 67789987542 45544 4678899999876653221 1234678999877777788777889999998754210
Q ss_pred cccceeccCcccceeceeccCchhhhhhcccCcceeecCCCC-CeEEEeecccccccCcccccccCCCCCCCcccccccc
Q psy12356 146 RHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRK-PAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEII 224 (400)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-g~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 224 (400)
.+.........++.+. ...+....+.... +.|...|+..... ..+. ....
T Consensus 152 ----~l~~~~l~~P~~iavd---------p~~g~ly~td~~~~~~I~r~~~dG~~~-----~~~~-----------~~~~ 202 (349)
T 3v64_C 152 ----VLLWQSLEKPRAIALH---------PMEGTIYWTDWGNTPRIEASSMDGSGR-----RIIA-----------DTHL 202 (349)
T ss_dssp ----EEECTTCSCEEEEEEE---------TTTTEEEEEECSSSCEEEEEETTSCSC-----EESC-----------CSSC
T ss_pred ----EEEeCCCCCcceEEEe---------cCcCeEEEeccCCCCEEEEEeCCCCCc-----EEEE-----------ECCC
Confidence 0100000011122221 1123333333333 6677776653210 1110 0112
Q ss_pred cCeEEEEECCCCcEEE-E-ecCCeEEEEeCCCC
Q psy12356 225 SSISDVKISNSGRYMI-S-RDYLCVKVWDLHME 255 (400)
Q Consensus 225 ~~V~~v~fSpdg~~la-s-~~D~tIklWD~~~~ 255 (400)
..-+.|+|+|++..|. + +..+.|..+|+...
T Consensus 203 ~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~ 235 (349)
T 3v64_C 203 FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGS 235 (349)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred CCcceEEEeCCCCEEEEEECCCCEEEEEeCCCC
Confidence 3467899998766554 4 34688999998753
No 275
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=88.50 E-value=9.6 Score=35.89 Aligned_cols=114 Identities=13% Similarity=0.167 Sum_probs=66.1
Q ss_pred EEEEEECC--CCC-eEEEe-c--CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEec
Q psy12356 6 REASQRFS--DGE-LLATG-D--KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR 79 (400)
Q Consensus 6 v~~v~fsp--dG~-~Las~-s--~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~ 79 (400)
...+.+.+ ||. +|..+ . .+.+|.||+++... +....+.++.+. +. ...+++...++
T Consensus 114 PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~-------~~~~~~~~~~g~-~~----------~~pND~~v~~~ 175 (355)
T 3sre_A 114 PHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEE-------KSLLHLKTIRHK-LL----------PSVNDIVAVGP 175 (355)
T ss_dssp EEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTT-------TEEEEEEEECCT-TC----------SSEEEEEEEET
T ss_pred eeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCC-------CEEEEEeccccC-CC----------CCCceEEEeCC
Confidence 44555544 454 34333 2 25688888876532 122334444432 11 34788999887
Q ss_pred cCCceEEEeeC----C------------CeEEEEEccCCCccccc---ccEEEEEEecCCCCEEEEEeCCCeEEEEeccc
Q psy12356 80 KNQAHFLLSTN----D------------QSFNIVDIKPTNMEELN---EVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 80 ~~~~~~l~ss~----D------------~tI~lWd~~~~~~~~~~---~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~ 140 (400)
+ .+.++.. | ..=+||.++.++++... ..-+.++|+||+..++++-+..+.|..+|+..
T Consensus 176 G---~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~ 252 (355)
T 3sre_A 176 E---HFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA 252 (355)
T ss_dssp T---EEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred C---CEEecCCcEeCCcccccchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence 6 4444321 2 23466666555533222 23589999999766667767788999999864
No 276
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=86.54 E-value=8.7 Score=37.24 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=49.6
Q ss_pred eeEEEEEeccCCceEEEeeCCCeEEEEEccCCC-c-c-------------c-------ccccEEEEEEecCCCC--EEEE
Q psy12356 71 INKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN-M-E-------------E-------LNEVITAAEFHPIDCN--LFVY 126 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~-~-~-------------~-------~~~~V~sv~f~p~~~~--~las 126 (400)
|..+..+|.| .+++-.++.+|.|-.+..+. . . . ....|..+-|||-+.+ .|+.
T Consensus 68 i~qlvlSpsG---~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVV 144 (452)
T 3pbp_A 68 TFHVISSTSG---DLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVV 144 (452)
T ss_dssp TCEEEECTTS---SEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEE
T ss_pred eeEEEECCCC---CEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEE
Confidence 5668888876 56665667899998886332 0 0 0 1245899999998643 7888
Q ss_pred EeCCCeEEEEecccc
Q psy12356 127 SSSKGTIRLCDMRAA 141 (400)
Q Consensus 127 ~s~Dg~i~lWD~~~~ 141 (400)
=-.|++||+||+...
T Consensus 145 LtsD~~Ir~yDl~~s 159 (452)
T 3pbp_A 145 LKEDDTITMFDILNS 159 (452)
T ss_dssp EETTSCEEEEETTCT
T ss_pred EecCCEEEEEEcccC
Confidence 889999999999873
No 277
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=86.04 E-value=3.8 Score=41.89 Aligned_cols=110 Identities=6% Similarity=-0.037 Sum_probs=63.9
Q ss_pred EEEECC-CCCeEEEecCCC-----------eEEEEEcCCCCccccCCCCcceeeeeee-ccCcchhhcccccccceeeEE
Q psy12356 8 ASQRFS-DGELLATGDKGG-----------RVVIFQRDPLSKTSIPKRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKI 74 (400)
Q Consensus 8 ~v~fsp-dG~~Las~s~Dg-----------~I~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~v 74 (400)
.+++.| +|++++.|+.+. .+.+||..+.+ ...+..+. .+. .....+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~---------w~~~~~~~~~~~------------~~~~~~ 248 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI---------VSDRTVTVTKHD------------MFCPGI 248 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCC---------BCCCEEEECSCC------------CSSCEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCc---------EEeCcccCCCCC------------Cccccc
Confidence 567777 999999887543 58889987542 11111111 111 001234
Q ss_pred EEEeccCCceEEEee-CCCeEEEEEccCCCccc---cc--ccEEEEEEecCCCCEEEEEe-CC-----CeEEEEecccc
Q psy12356 75 RWLRRKNQAHFLLST-NDQSFNIVDIKPTNMEE---LN--EVITAAEFHPIDCNLFVYSS-SK-----GTIRLCDMRAA 141 (400)
Q Consensus 75 ~~sp~~~~~~~l~ss-~D~tI~lWd~~~~~~~~---~~--~~V~sv~f~p~~~~~las~s-~D-----g~i~lWD~~~~ 141 (400)
++.+++. .++.++ .+.++.+||..+++... +. ..-.++++.+++ ++++.|+ .+ ..+.+||..++
T Consensus 249 ~~~~~g~--lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg-~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 249 SMDGNGQ--IVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDG-RVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EECTTSC--EEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTS-CEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred cCCCCCC--EEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCC-eEEEEeCcccCCcccccceEeCCCCC
Confidence 5555542 455565 46689999998765211 11 111234455654 7888888 34 57899998876
No 278
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=85.70 E-value=24 Score=33.21 Aligned_cols=57 Identities=19% Similarity=0.127 Sum_probs=39.1
Q ss_pred EEEeeCCCeEEEEEccCCCcccc---cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEEL---NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~~---~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
++.-+....|+..+++++..... .....+++|++.++.++.+-...+.|+.+++...
T Consensus 89 ~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~ 148 (386)
T 3v65_B 89 VLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGS 148 (386)
T ss_dssp EEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred eeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 33333446788888876653211 2346789999876667777677889999998765
No 279
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=84.77 E-value=9 Score=35.84 Aligned_cols=54 Identities=13% Similarity=0.249 Sum_probs=35.9
Q ss_pred eeEEEEEeccCCceEEEeeCCCeEEEEEccCCC--cccc------cccEEEEEEecC---CCCEEEEEe
Q psy12356 71 INKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTN--MEEL------NEVITAAEFHPI---DCNLFVYSS 128 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~--~~~~------~~~V~sv~f~p~---~~~~las~s 128 (400)
...++|.|++ .++++..++.|+++|. ++. +... ......++|+|+ ++.++++-+
T Consensus 31 P~~ia~~pdG---~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 31 PWSIAPLGGG---RYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp EEEEEEEETT---EEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CeEEEEcCCC---eEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 5689999986 6777777799998873 333 1100 134678999997 456666554
No 280
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=84.40 E-value=26 Score=32.46 Aligned_cols=201 Identities=10% Similarity=0.054 Sum_probs=103.6
Q ss_pred EEEEEECCCCCeE-EEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFSDGELL-ATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fspdG~~L-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
+..++|++.++.| .+-...+.|+.++.++.. . ..+..... .....+++.+.+. ..
T Consensus 75 ~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~---------~---~~~~~~~~-----------~~p~glavd~~~g-~l 130 (349)
T 3v64_C 75 AIALDFHHRRELVFWSDVTLDRILRANLNGSN---------V---EEVVSTGL-----------ESPGGLAVDWVHD-KL 130 (349)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------C---EEEECSSC-----------SCCCEEEEETTTT-EE
T ss_pred eEEEEEeccccEEEEEeccCCceEEEecCCCC---------c---eEEEeCCC-----------CCccEEEEecCCC-eE
Confidence 5688998755544 444567889888887532 0 11111100 1234577765432 23
Q ss_pred EEEeeCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCC-CeEEEEecccccccccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSK-GTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~D-g~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+.+-...+.|.+.+++....... ...-++++++|.++.++.+-... +.|...++...... .+........
T Consensus 131 y~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-----~~~~~~~~~P 205 (349)
T 3v64_C 131 YWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-----IIADTHLFWP 205 (349)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-----ESCCSSCSCE
T ss_pred EEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-----EEEECCCCCc
Confidence 34445577888888875442111 13457899999777777776666 78888887654210 0000000011
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
.++.+. ...+....+....+.|..+|+.... .+.+. ......-..+++ .++.+.
T Consensus 206 nGla~d---------~~~~~lY~aD~~~~~I~~~~~dG~~-----~~~~~-----------~~~~~~P~giav-~~~~ly 259 (349)
T 3v64_C 206 NGLTID---------YAGRRMYWVDAKHHVIERANLDGSH-----RKAVI-----------SQGLPHPFAITV-FEDSLY 259 (349)
T ss_dssp EEEEEE---------TTTTEEEEEETTTTEEEEEETTSCS-----CEEEE-----------CSSCSSEEEEEE-ETTEEE
T ss_pred ceEEEe---------CCCCEEEEEECCCCEEEEEeCCCCc-----eEEEE-----------eCCCCCceEEEE-ECCEEE
Confidence 122221 1233333344456788888875321 01111 011123456777 345555
Q ss_pred EEe-cCCeEEEEeCCCCCCceeee
Q psy12356 240 ISR-DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 240 as~-~D~tIklWD~~~~~~~l~~~ 262 (400)
.+. ..+.|...|..++. .++.+
T Consensus 260 ~td~~~~~V~~~~~~~G~-~~~~i 282 (349)
T 3v64_C 260 WTDWHTKSINSANKFTGK-NQEII 282 (349)
T ss_dssp EEETTTTEEEEEETTTCC-SCEEE
T ss_pred EecCCCCeEEEEEccCCC-ccEEe
Confidence 553 56788888855553 23444
No 281
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=83.41 E-value=26 Score=31.78 Aligned_cols=112 Identities=10% Similarity=0.021 Sum_probs=67.2
Q ss_pred eEEEEEECCC-CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSD-GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspd-G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..+++++. |++.++-..++.|.+.+.+... .+++.... -.....++..|.+.
T Consensus 78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~------------~~~~~~~~-----------~~~P~~iavdp~~g-- 132 (316)
T 1ijq_A 78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------RKTLFREN-----------GSKPRAIVVDPVHG-- 132 (316)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSSS------------EEEEEECT-----------TCCEEEEEEETTTT--
T ss_pred CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc------------eEEEEECC-----------CCCcceEEeCCCCC--
Confidence 3567888864 4455555667889998876321 11221100 02356788887542
Q ss_pred eEEEee-CC-CeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 84 HFLLST-ND-QSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss-~D-~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+..+. .. +.|...+++....+.. -..-++++++|+++.++.+-+..+.|...|+...
T Consensus 133 ~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~ 196 (316)
T 1ijq_A 133 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 196 (316)
T ss_dssp EEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCC
Confidence 444443 22 6777777754332211 1245789999987667777667789999998753
No 282
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=83.17 E-value=45 Score=34.39 Aligned_cols=204 Identities=12% Similarity=0.125 Sum_probs=103.5
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.|.++...++|.+-+ |..++-|..++..... ++ .+. +.+.......+ ....|.++...+++ .
T Consensus 314 ~v~~i~~D~~g~lWi-gt~~~Gl~~~~~~~~~---------~~---~~~-~~~~~~~~~~l-~~~~v~~i~~d~~g---~ 375 (781)
T 3v9f_A 314 SARYIFQDSFNNIWI-GTWGGGINFISNAPPT---------FH---TWS-YSPTQMNESSL-SNKVVSSVCDDGQG---K 375 (781)
T ss_dssp CEEEEEECSSCCEEE-EEBSSCEEEECSSCCS---------CE---EEC-----CCCSSCC-SSSCEEEEEECTTS---C
T ss_pred eEEEEEEeCCCCEEE-EecCCeEEEeCCCCCc---------ce---eec-cCccccccCCC-CCcceEEEEEcCCC---C
Confidence 478888888887444 5556668888865421 11 111 10000000000 01236677654433 5
Q ss_pred EEEeeCCCeEEEEEccCCCccc-------ccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCccc
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEE-------LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNC 157 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~-------~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~ 157 (400)
+-+++.++-+..+|..++.+.. ....|.++...+++ ++.+ |..++-|..+|..++....- .. ..+...
T Consensus 376 lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g-~lWi-gt~~~Gl~~~~~~~~~~~~~-~~--~~~~~~ 450 (781)
T 3v9f_A 376 LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEG-NLWF-GTYLGNISYYNTRLKKFQII-EL--EKNELL 450 (781)
T ss_dssp EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTS-CEEE-EETTEEEEEECSSSCEEEEC-CS--TTTCCC
T ss_pred EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCC-CEEE-EeccCCEEEEcCCCCcEEEe-cc--CCCCCC
Confidence 6677766667888876554321 12468888888764 5544 55666788888876632110 00 001111
Q ss_pred ceeceeccCchhhhhhcccCcc-eeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCC
Q psy12356 158 NCQGLIVPESKREERQSSQNRR-EKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSG 236 (400)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg 236 (400)
.+..+.. -+++. .+++ . +.+..+|..++.. ..+...... . .....|.++...++|
T Consensus 451 ~v~~i~~----------d~~g~lwigt--~-~Gl~~~~~~~~~~-----~~~~~~~~~---~---~~~~~i~~i~~d~~g 506 (781)
T 3v9f_A 451 DVRVFYE----------DKNKKIWIGT--H-AGVFVIDLASKKV-----IHHYDTSNS---Q---LLENFVRSIAQDSEG 506 (781)
T ss_dssp CEEEEEE----------CTTSEEEEEE--T-TEEEEEESSSSSC-----CEEECTTTS---S---CSCSCEEEEEECTTC
T ss_pred eEEEEEE----------CCCCCEEEEE--C-CceEEEeCCCCeE-----EecccCccc---c---cccceeEEEEEcCCC
Confidence 1111111 12222 2333 2 4577777665321 111100000 0 012578999999999
Q ss_pred cEEEEecCCeEEEEeCCCC
Q psy12356 237 RYMISRDYLCVKVWDLHME 255 (400)
Q Consensus 237 ~~las~~D~tIklWD~~~~ 255 (400)
++.+++.++-+..+|..++
T Consensus 507 ~lWigt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 507 RFWIGTFGGGVGIYTPDMQ 525 (781)
T ss_dssp CEEEEESSSCEEEECTTCC
T ss_pred CEEEEEcCCCEEEEeCCCC
Confidence 9988775444666887653
No 283
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=83.16 E-value=6.3 Score=39.76 Aligned_cols=52 Identities=13% Similarity=0.117 Sum_probs=33.3
Q ss_pred CCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 91 DQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 91 D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
++.|.-||+.+|+.. .....+.+......+ .++..++.|+.++.+|.+++++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-glvf~g~~dg~l~A~D~~tG~~ 519 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAG-NLVFTGTGDGYFKAFDAKSGKE 519 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEESSCCCSCCEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred cceEEEEECCCCCEEEEecCCCCCcccceEeCC-CEEEEECCCCcEEEEECCCCCE
Confidence 688999999988731 111111111111223 4667788999999999999954
No 284
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=82.92 E-value=19 Score=36.20 Aligned_cols=19 Identities=16% Similarity=0.139 Sum_probs=15.4
Q ss_pred EEEeeCCCeEEEEEccCCC
Q psy12356 85 FLLSTNDQSFNIVDIKPTN 103 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~ 103 (400)
++.++.++.+.++|.++|+
T Consensus 339 v~~~~~~G~l~~lD~~tG~ 357 (582)
T 1flg_A 339 TAHADRNGFFYVVDRSNGK 357 (582)
T ss_dssp EEEECTTSEEEEEETTTCC
T ss_pred EEEECCCceEEEEECCCCC
Confidence 4456789999999998876
No 285
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=81.70 E-value=5.5 Score=40.89 Aligned_cols=53 Identities=8% Similarity=0.043 Sum_probs=35.9
Q ss_pred CCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 90 NDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 90 ~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
.++.|..||+.+|+.. ..........+...+ .+++.++.|+.++.||.++++.
T Consensus 436 ~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~g-g~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 436 VSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAG-NLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CEEEEEEEETTTTEEEEEEEESSSCCCCEEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred ccceEEEEeCCCCcEEEEccCCCCCcCceeEeCC-CEEEEECCcccchhhhhhcChh
Confidence 3588999999998731 111222223334444 5777788999999999999854
No 286
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=81.59 E-value=35 Score=32.00 Aligned_cols=101 Identities=11% Similarity=0.253 Sum_probs=56.0
Q ss_pred CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEec----cCCceEEEee
Q psy12356 14 DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR----KNQAHFLLST 89 (400)
Q Consensus 14 dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~----~~~~~~l~ss 89 (400)
...+++.-...+-+.|||++. +.++.+.. ..++.|..-|. +..--++.++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~G------------~~l~~~~~--------------g~~nnVD~r~~~~l~g~~~dla~as 92 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLDG------------KMLHSYNT--------------GKLNNVDIRYDFPLNGKKVDIAAAS 92 (355)
T ss_dssp GGCEEEEEETTTEEEEEETTS------------CEEEEECC--------------SCEEEEEEEEEEEETTEEEEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcCCC------------cEEEEccC--------------CCcccEEEecccccCCceEeEEEEe
Confidence 344555556678899999953 22333321 12455554442 1100134333
Q ss_pred --C--CCeEEEEEcc--CCCccccc----------ccEEEEEE--ecCCCC-EEEEEeCCCeEEEEeccc
Q psy12356 90 --N--DQSFNIVDIK--PTNMEELN----------EVITAAEF--HPIDCN-LFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 90 --~--D~tI~lWd~~--~~~~~~~~----------~~V~sv~f--~p~~~~-~las~s~Dg~i~lWD~~~ 140 (400)
. +++|++++++ ++.+.... ..+..+++ +|.++. ++.....+|.+..|++..
T Consensus 93 ~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~ 162 (355)
T 3amr_A 93 NRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKA 162 (355)
T ss_dssp ECSTTCCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEE
T ss_pred CCCCCCCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEe
Confidence 3 5899999774 44432221 23456777 775544 344455689999999853
No 287
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=81.29 E-value=13 Score=36.10 Aligned_cols=55 Identities=11% Similarity=0.263 Sum_probs=34.8
Q ss_pred eeEEEEEeccCCceEEEeeCCC-eEEEEEccCCCccc---c---------cccEEEEEEecC---CCCEEEEEe
Q psy12356 71 INKIRWLRRKNQAHFLLSTNDQ-SFNIVDIKPTNMEE---L---------NEVITAAEFHPI---DCNLFVYSS 128 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~ss~D~-tI~lWd~~~~~~~~---~---------~~~V~sv~f~p~---~~~~las~s 128 (400)
...++|.|++ .++++...+ .|++++..++.... . ......|+|+|+ ++.++++-+
T Consensus 29 P~~~a~~pdG---~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s 99 (454)
T 1cru_A 29 PHALLWGPDN---QIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGT 99 (454)
T ss_dssp EEEEEECTTS---CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEE
T ss_pred ceEEEEcCCC---cEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEe
Confidence 5689999886 577766554 68888765554211 1 123568999995 445555554
No 288
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=80.72 E-value=11 Score=33.17 Aligned_cols=104 Identities=7% Similarity=0.035 Sum_probs=54.3
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
.+..++|+|||.+-|. .+|.+.-.+..+.+. . .+.+-... +-..+- ....++.|.|++. .
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~---------~---~W~~s~t~---IG~~Gw-~~F~a~~fD~~G~--L 101 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDN---------D---NWMGRAKK---IGNGGW-NQFQFLFFDPNGY--L 101 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTT---------C---CHHHHCEE---EECSCG-GGCSEEEECTTSC--E
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCc---------c---cccccccE---eccccc-ccceEEEECCCCC--E
Confidence 3568999999998887 566644333322110 0 11110000 000000 0125677877763 4
Q ss_pred EEEeeCCCeEEEEEccCCCcccc-----------cccEEEEEEecCCCCEEEEEeCCCeE
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEEL-----------NEVITAAEFHPIDCNLFVYSSSKGTI 133 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~~-----------~~~V~sv~f~p~~~~~las~s~Dg~i 133 (400)
+++ .|+.|.=|+-.+.....+ -..+..|.|.|+| .+.|.. |+.+
T Consensus 102 Yav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G-~Lyav~--dg~l 156 (236)
T 1tl2_A 102 YAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNG-YLYAVH--GQQF 156 (236)
T ss_dssp EEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTS-CEEEEE--TTEE
T ss_pred EEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCc-eEEEEe--CCcE
Confidence 444 668887666533221111 1357899999985 666655 7764
No 289
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=80.11 E-value=7.5 Score=40.17 Aligned_cols=116 Identities=8% Similarity=-0.003 Sum_probs=61.1
Q ss_pred EEEEEECCCCCeEEEe-cCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFSDGELLATG-DKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fspdG~~Las~-s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
+..|+|+++++.|..+ ...+.|+.+++.+... +. .....+.. . + ..+..|++.+.+. ..
T Consensus 408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~------~~-~~~~~i~~-~--------~---~~P~glavD~~~g-~L 467 (699)
T 1n7d_A 408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VS-SYDTVISR-D--------I---QAPDGLAVDWIHS-NI 467 (699)
T ss_dssp CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-------C-CCCCBCCS-C--------C-----CCCEECCCSSS-BC
T ss_pred eEEEccccccCeEEEEecCCCeEEEEecCCCCC------Cc-ceEEEEeC-C--------C---CCcceEEEEeeCC-cE
Confidence 4578898866655544 4567899988864100 00 00000100 0 0 1133455554331 23
Q ss_pred EEEeeCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCC-CeEEEEecccc
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSK-GTIRLCDMRAA 141 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~D-g~i~lWD~~~~ 141 (400)
+++-...+.|.+.+++......+ ......++++|.++.++++-... +.|...++...
T Consensus 468 Y~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~ 529 (699)
T 1n7d_A 468 YWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 529 (699)
T ss_dssp EECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred EEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence 34435577888888876542211 12346788999766666654333 67777776543
No 290
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=79.18 E-value=29 Score=34.19 Aligned_cols=68 Identities=10% Similarity=0.002 Sum_probs=43.4
Q ss_pred eeEEEEEeccCCceEEE-eeCCCeEEEEEcc-------CCCc------c------cc-----cccEEEEEEecCCCCEEE
Q psy12356 71 INKIRWLRRKNQAHFLL-STNDQSFNIVDIK-------PTNM------E------EL-----NEVITAAEFHPIDCNLFV 125 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~-ss~D~tI~lWd~~-------~~~~------~------~~-----~~~V~sv~f~p~~~~~la 125 (400)
...++.+|+. +.+.+ -..++.|..+|++ ++.. . .+ ...-..++|+|++..+++
T Consensus 249 p~giavdp~~--g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYv 326 (496)
T 3kya_A 249 CNGATIHPIN--GELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYF 326 (496)
T ss_dssp CCCEEECTTT--CCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred ceEEEEcCCC--CeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEE
Confidence 3457777753 24444 4567889999987 5543 0 10 122368999998643567
Q ss_pred EEeCCCeEEEEeccc
Q psy12356 126 YSSSKGTIRLCDMRA 140 (400)
Q Consensus 126 s~s~Dg~i~lWD~~~ 140 (400)
+-+..+.|+.+|...
T Consensus 327 aD~~~h~I~kid~dg 341 (496)
T 3kya_A 327 GVINNHYFMRSDYDE 341 (496)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EeCCCCEEEEEecCC
Confidence 667788898877544
No 291
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=78.97 E-value=5.8 Score=39.93 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=33.7
Q ss_pred CCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 90 NDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 90 ~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
.++.+..||+.+|+.. .....+.+..+...+ .++..++.|+.|+.||.+++++
T Consensus 442 ~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~g-g~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKG-GLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred CCCeEEEEECCCCCEEEEecCCCCccceeEEECC-CEEEEEcCCCeEEEEECCCCCE
Confidence 3578999999888731 111122222222333 4566688999999999999853
No 292
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=78.33 E-value=43 Score=31.01 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=22.1
Q ss_pred eEEEEEECCCCC-eEEEecCCCeEEEEEcC
Q psy12356 5 MREASQRFSDGE-LLATGDKGGRVVIFQRD 33 (400)
Q Consensus 5 ~v~~v~fspdG~-~Las~s~Dg~I~iwd~~ 33 (400)
....++|.|||+ +++ +...|.|++++.+
T Consensus 19 ~P~~i~~~pdG~~l~V-~e~~G~i~~~~~~ 47 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLI-TLRGGELRHWQAG 47 (353)
T ss_dssp SEEEEEECSTTCCEEE-EETTTEEEEEETT
T ss_pred CcEEEEEcCCCCEEEE-EeCCceEEEEeCC
Confidence 467899999999 665 4567999999854
No 293
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=78.29 E-value=15 Score=34.27 Aligned_cols=124 Identities=10% Similarity=0.039 Sum_probs=65.2
Q ss_pred eEEEEEE---CCCCCeEEEec-------------CCCeEEEEEcC---CCCccccCCCCcceeeeeeeccCcchhhcccc
Q psy12356 5 MREASQR---FSDGELLATGD-------------KGGRVVIFQRD---PLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSL 65 (400)
Q Consensus 5 ~v~~v~f---spdG~~Las~s-------------~Dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~ 65 (400)
.+..|.| .|+|+++++.. .+..+..+|+. +++. .....+.+....+..+...
T Consensus 64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~---------~~~~dL~~~~~~~~~~~g~ 134 (334)
T 2p9w_A 64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKP---------VWSVNFEKVQDEFEKKAGK 134 (334)
T ss_dssp EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCC---------SEEEESHHHHHHHHHHHSS
T ss_pred eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCE---------EEEecCccccccccccccc
Confidence 4678999 69988888643 26778899987 4321 1111121111000000000
Q ss_pred cccceeeEEEEEeccCCceEEEeeCC-CeEEEEEccCCCcc-----c----ccccEEEEEEecCCCCEEEEEeCCCeEEE
Q psy12356 66 EIEEKINKIRWLRRKNQAHFLLSTND-QSFNIVDIKPTNME-----E----LNEVITAAEFHPIDCNLFVYSSSKGTIRL 135 (400)
Q Consensus 66 ~~~~~V~~v~~sp~~~~~~~l~ss~D-~tI~lWd~~~~~~~-----~----~~~~V~sv~f~p~~~~~las~s~Dg~i~l 135 (400)
.-...+.++.-++++ .+++.+.- +.|...+.+..... . .....+.++++|++ ++|+.....+.+.-
T Consensus 135 -~~~~~nDvavD~~Gn--aYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg-~~Liv~~~~g~L~~ 210 (334)
T 2p9w_A 135 -RPFGVVQSAQDRDGN--SYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHS-NKLIAFGGPRALTA 210 (334)
T ss_dssp -CCEEEEEEEECTTSC--EEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTT-TEEEEESSSSSEEE
T ss_pred -cccCCceeEECCCCC--EEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCC-CEEEEEcCCCeEEE
Confidence 002367777777664 66655444 44333333222110 0 01125689999986 45555544999999
Q ss_pred Eecccc
Q psy12356 136 CDMRAA 141 (400)
Q Consensus 136 WD~~~~ 141 (400)
+|++..
T Consensus 211 fD~~~p 216 (334)
T 2p9w_A 211 FDVSKP 216 (334)
T ss_dssp EECSSS
T ss_pred EcCCCC
Confidence 998743
No 294
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=77.73 E-value=31 Score=32.18 Aligned_cols=30 Identities=10% Similarity=0.157 Sum_probs=24.6
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCC
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDP 34 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~ 34 (400)
..+.++|.|||+++++--..|+|++++..+
T Consensus 33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~ 62 (347)
T 3das_A 33 SPWGLAPLPGGDLLVSSRDEATITRVDAKT 62 (347)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CceEEEEcCCCcEEEEEecCCEEEEEECCC
Confidence 467899999999888776689999997543
No 295
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=77.23 E-value=39 Score=29.99 Aligned_cols=106 Identities=12% Similarity=0.230 Sum_probs=60.8
Q ss_pred eEEEEEECCCCCeEEE-ecCCCeEEEEEcCCCCccccCCCCcceeeeee--eccCcchhhcccccccceeeEEEEEeccC
Q psy12356 5 MREASQRFSDGELLAT-GDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTF--QSHEPEFDYLKSLEIEEKINKIRWLRRKN 81 (400)
Q Consensus 5 ~v~~v~fspdG~~Las-~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~~~~~~~~V~~v~~sp~~~ 81 (400)
.+..++|+|+++.|.+ ...++.|...|.. + ++++++ .+... ...|++.+++
T Consensus 28 ~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g-----------~v~~~i~l~g~~D-------------~EGIa~~~~g- 81 (255)
T 3qqz_A 28 NISSLTWSAQSNTLFSTINKPAAIVEMTTN-G-----------DLIRTIPLDFVKD-------------LETIEYIGDN- 81 (255)
T ss_dssp CEEEEEEETTTTEEEEEEETTEEEEEEETT-C-----------CEEEEEECSSCSS-------------EEEEEECSTT-
T ss_pred CcceeEEeCCCCEEEEEECCCCeEEEEeCC-C-----------CEEEEEecCCCCC-------------hHHeEEeCCC-
Confidence 5889999998776665 5567788888876 2 233333 22211 3345665443
Q ss_pred CceEEEee-CCCeEEEEEccCCC-cc------------cccccEEEEEEecCCCCEEEEEeCCCeEEEEecc
Q psy12356 82 QAHFLLST-NDQSFNIVDIKPTN-ME------------ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMR 139 (400)
Q Consensus 82 ~~~~l~ss-~D~tI~lWd~~~~~-~~------------~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~ 139 (400)
.++++. .++.+.+.++.... .. ..+....+++|+|.++.+++ +.+.....||.++
T Consensus 82 --~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~v-a~E~~p~~i~~~~ 150 (255)
T 3qqz_A 82 --QFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWF-FKEKNPIEVYKVN 150 (255)
T ss_dssp --EEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEE-EEESSSEEEEEEE
T ss_pred --EEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEE-EECcCCceEEEEc
Confidence 555443 46677777764322 10 11223579999998644444 5554445555554
No 296
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=75.08 E-value=9.6 Score=38.26 Aligned_cols=18 Identities=6% Similarity=-0.025 Sum_probs=14.6
Q ss_pred EEeeCCCeEEEEEccCCC
Q psy12356 86 LLSTNDQSFNIVDIKPTN 103 (400)
Q Consensus 86 l~ss~D~tI~lWd~~~~~ 103 (400)
+.++.++.+.+.|.++|+
T Consensus 320 ~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 320 SHIDRNGILYTLNRENGN 337 (571)
T ss_dssp EEECTTSEEEEEETTTCC
T ss_pred EEeCCCcEEEEEECCCCC
Confidence 346678999999998887
No 297
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=74.71 E-value=87 Score=32.75 Aligned_cols=117 Identities=9% Similarity=0.016 Sum_probs=65.4
Q ss_pred eEEEEEECCC-CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSD-GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspd-G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+.+|+|++. +++..+-...+.|+.+++...... +.. ...+...- ..+..|++.+.+. .
T Consensus 425 ~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~-----~~~--~~vi~~~l------------~~P~GLAvD~~~~-~ 484 (791)
T 3m0c_C 425 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----SSY--DTVISRDI------------QAPDGLAVDWIHS-N 484 (791)
T ss_dssp SEEEEEEETTTTEEEEEETTTTEEEEEEC-------------C--EEEECSSC------------SCCCEEEEETTTT-E
T ss_pred ceEEEeecccCCeeEEeeccceeEEEEeccCCCCC-----cce--eEEEecCC------------CCcceeeeeecCC-c
Confidence 3567889884 445555556788888888642100 000 11111000 1245677765542 2
Q ss_pred eEEEeeCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCC-CeEEEEecccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSK-GTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~D-g~i~lWD~~~~ 141 (400)
.+.+-...+.|.+.+++....+.+ .....+|+++|.++.++.+-..+ +.|...++...
T Consensus 485 LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 485 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 333445678899999875542211 12467999999866676665443 77888887654
No 298
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=74.53 E-value=32 Score=32.13 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=35.7
Q ss_pred eeEEEEEeccCCceEEEeeC-CCeEEEEEccCCCccc---c-------cccEEEEEEecC---CCCEEEEE
Q psy12356 71 INKIRWLRRKNQAHFLLSTN-DQSFNIVDIKPTNMEE---L-------NEVITAAEFHPI---DCNLFVYS 127 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~ss~-D~tI~lWd~~~~~~~~---~-------~~~V~sv~f~p~---~~~~las~ 127 (400)
...++|.|++ .++++.. .+.|++++.+++.... . ......++|+|+ ++.++++-
T Consensus 34 P~~ia~~pdG---~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~y 101 (347)
T 3das_A 34 PWGLAPLPGG---DLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYF 101 (347)
T ss_dssp EEEEEECTTS---CEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEE
T ss_pred ceEEEEcCCC---cEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEE
Confidence 6789999987 5777665 8999998866554211 1 234678999995 34455543
No 299
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=73.76 E-value=52 Score=29.72 Aligned_cols=207 Identities=9% Similarity=-0.022 Sum_probs=103.0
Q ss_pred EEEEEECCCCCeE-EEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFSDGELL-ATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fspdG~~L-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
+..++|+++++.| .+-..++.|+.++.++... +.. ....+...- ..+..+++.+.+. ..
T Consensus 32 p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~------~~~-~~~~~~~~~------------~~p~glavd~~~~-~l 91 (316)
T 1ijq_A 32 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHG------VSS-YDTVISRDI------------QAPDGLAVDWIHS-NI 91 (316)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEEC---------------CEEEECSSC------------SCCCEEEEETTTT-EE
T ss_pred eEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC------Ccc-cEEEEeCCC------------CCcCEEEEeecCC-eE
Confidence 5689999866544 4555578999999874100 000 001111100 1245677765432 23
Q ss_pred EEEeeCCCeEEEEEccCCCccc----ccccEEEEEEecCCCCEEEEEeCC-CeEEEEecccccccccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEE----LNEVITAAEFHPIDCNLFVYSSSK-GTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~----~~~~V~sv~f~p~~~~~las~s~D-g~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+++-...+.|.+.|++...... ....-.+++++|.++.++.+.... +.|...++..... . .+........
T Consensus 92 y~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~-~----~~~~~~~~~P 166 (316)
T 1ijq_A 92 YWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y----SLVTENIQWP 166 (316)
T ss_dssp EEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE-E----EEECSSCSCE
T ss_pred EEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe-E----EEEECCCCCc
Confidence 3444567889999987544221 113457899999776676665544 6788877754311 0 0100000011
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
.++.+. ...+....+....+.|..+|+.... .+.+.... +....-..+++. .+++.
T Consensus 167 ~gla~d---------~~~~~lY~~D~~~~~I~~~d~dg~~-----~~~~~~~~---------~~~~~P~giav~-~~~ly 222 (316)
T 1ijq_A 167 NGITLD---------LLSGRLYWVDSKLHSISSIDVNGGN-----RKTILEDE---------KRLAHPFSLAVF-EDKVF 222 (316)
T ss_dssp EEEEEE---------TTTTEEEEEETTTTEEEEEETTSCS-----CEEEEECT---------TTTSSEEEEEEE-TTEEE
T ss_pred eEEEEe---------ccCCEEEEEECCCCeEEEEecCCCc-----eEEEeecC---------CccCCcEEEEEE-CCEEE
Confidence 122221 1123333444456788888876321 11111000 001223566764 35555
Q ss_pred EEe-cCCeEEEEeCCCCCCceeee
Q psy12356 240 ISR-DYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 240 as~-~D~tIklWD~~~~~~~l~~~ 262 (400)
.+. ..+.|...|..++. .++.+
T Consensus 223 ~~d~~~~~V~~~~~~~g~-~~~~i 245 (316)
T 1ijq_A 223 WTDIINEAIFSANRLTGS-DVNLL 245 (316)
T ss_dssp EEETTTTEEEEEETTTCC-CCEEE
T ss_pred EEECCCCeEEEEeCCCCc-ceEEE
Confidence 553 56889999887654 34444
No 300
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=72.67 E-value=56 Score=29.69 Aligned_cols=202 Identities=5% Similarity=-0.037 Sum_probs=102.0
Q ss_pred EEEEEECCC-CCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFSD-GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fspd-G~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
+.+++|++. +.+..+-...+.|+.++.++... . .. .+..-- ..+..+++.+.+. ..
T Consensus 37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~-------~-~~--~~~~~l------------~~p~glavd~~~g-~l 93 (318)
T 3sov_A 37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTES-------V-QN--VVVSGL------------LSPDGLACDWLGE-KL 93 (318)
T ss_dssp EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSC-------C-CE--EEEECC------------SCCCEEEEETTTT-EE
T ss_pred cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCc-------e-EE--EEcCCC------------CCccEEEEEcCCC-eE
Confidence 567888885 44555555678888888764310 0 00 111000 1244567765432 23
Q ss_pred EEEeeCCCeEEEEEccCCCccc----ccccEEEEEEecCCCCEEEEEe-CCCeEEEEecccccccccccceeccCcccce
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEE----LNEVITAAEFHPIDCNLFVYSS-SKGTIRLCDMRAAALCDRHSKCLIEGTNCNC 159 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~----~~~~V~sv~f~p~~~~~las~s-~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~ 159 (400)
+.+-...+.|.+.+++...... -...-++++++|.++.++.+-. ..+.|...++..... . .+....-...
T Consensus 94 y~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~-~----~~~~~~l~~P 168 (318)
T 3sov_A 94 YWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-F----IIINSEIYWP 168 (318)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC-E----EEECSSCSCE
T ss_pred EEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe-E----EEEECCCCCc
Confidence 3343556789999987544221 1134578999997666666553 357787777764311 0 0100000011
Q ss_pred eceeccCchhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEE
Q psy12356 160 QGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYM 239 (400)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~l 239 (400)
.++.+. ...+....+++..+.|..+|+.... .+.+. .+....-..+++..+ .++
T Consensus 169 nglavd---------~~~~~lY~aD~~~~~I~~~d~dG~~-----~~~~~-----------~~~~~~P~glav~~~-~ly 222 (318)
T 3sov_A 169 NGLTLD---------YEEQKLYWADAKLNFIHKSNLDGTN-----RQAVV-----------KGSLPHPFALTLFED-ILY 222 (318)
T ss_dssp EEEEEE---------TTTTEEEEEETTTTEEEEEETTSCS-----CEEEE-----------CSCCSCEEEEEEETT-EEE
T ss_pred cEEEEe---------ccCCEEEEEECCCCEEEEEcCCCCc-----eEEEe-----------cCCCCCceEEEEeCC-EEE
Confidence 122222 1133344444567788888875321 11111 011123456666433 344
Q ss_pred EE-ecCCeEEEEeCCCCCCceeee
Q psy12356 240 IS-RDYLCVKVWDLHMESRPVETY 262 (400)
Q Consensus 240 as-~~D~tIklWD~~~~~~~l~~~ 262 (400)
.+ ...+.|...|..++. .++.+
T Consensus 223 wtd~~~~~V~~~~~~~G~-~~~~i 245 (318)
T 3sov_A 223 WTDWSTHSILACNKYTGE-GLREI 245 (318)
T ss_dssp EEETTTTEEEEEETTTCC-SCEEE
T ss_pred EEecCCCeEEEEECCCCC-ceEEE
Confidence 44 356889999987664 23444
No 301
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=72.61 E-value=24 Score=32.81 Aligned_cols=55 Identities=9% Similarity=0.117 Sum_probs=35.3
Q ss_pred eeEEEEEeccCCce-EEEeeCCCeEEEEEccCCC---cccc-------cccEEEEEEecC---CCCEEEEEe
Q psy12356 71 INKIRWLRRKNQAH-FLLSTNDQSFNIVDIKPTN---MEEL-------NEVITAAEFHPI---DCNLFVYSS 128 (400)
Q Consensus 71 V~~v~~sp~~~~~~-~l~ss~D~tI~lWd~~~~~---~~~~-------~~~V~sv~f~p~---~~~~las~s 128 (400)
...++|.|++ . ++++...+.|++++.+... +... ......++|+|+ ++.++++-+
T Consensus 20 P~~i~~~pdG---~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~ 88 (353)
T 2g8s_A 20 PWALAFLPDN---HGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS 88 (353)
T ss_dssp EEEEEECSTT---CCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred cEEEEEcCCC---CEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence 5678999876 5 7777778999998853221 1111 123578999995 445666543
No 302
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=71.27 E-value=57 Score=31.71 Aligned_cols=29 Identities=3% Similarity=-0.025 Sum_probs=22.2
Q ss_pred eeEEEEEeccCCceEEEeeCCCeEEEEEcc
Q psy12356 71 INKIRWLRRKNQAHFLLSTNDQSFNIVDIK 100 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~ 100 (400)
...++|.|++. .+++++...+.|++++.+
T Consensus 16 P~~~a~~pdG~-~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 16 PVGALHSGDGS-QRLFILEKEGYVKILTPE 44 (463)
T ss_dssp EEEEECCSSSS-CCEEEEETTTEEEEECTT
T ss_pred ceEEEECCCCC-eEEEEEeCCceEEEEeCC
Confidence 56789999862 257888888999999754
No 303
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=71.15 E-value=47 Score=32.10 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=22.9
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCC
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDP 34 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~ 34 (400)
..+.++|.|||+++++-...+.|++++..+
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~ 57 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPES 57 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTT
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCC
Confidence 467899999999888765445788887543
No 304
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=70.68 E-value=17 Score=36.87 Aligned_cols=53 Identities=9% Similarity=0.119 Sum_probs=33.2
Q ss_pred CCCeEEEEEccCCCcc---cccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccc
Q psy12356 90 NDQSFNIVDIKPTNME---ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAAL 143 (400)
Q Consensus 90 ~D~tI~lWd~~~~~~~---~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~ 143 (400)
.++.+.-||+.+|+.. .+...+.+-.+...+ .++..++.|+.++.+|.+++++
T Consensus 451 ~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag-g~vf~gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 451 GLGQIKAYNAITGDYKWEKMERFAVWGGTMATAG-DLVFYGTLDGYLKARDSDTGDL 506 (599)
T ss_dssp CCEEEEEECTTTCCEEEEEEESSCCCSBCEEETT-TEEEEECTTSEEEEEETTTCCE
T ss_pred CcCeEEEEECCCCCEEeEecCCCCccCcceEecC-CEEEEECCCCeEEEEECCCCCE
Confidence 3578999999988731 111111111112233 4566688999999999999953
No 305
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=69.55 E-value=78 Score=33.11 Aligned_cols=111 Identities=10% Similarity=0.013 Sum_probs=67.6
Q ss_pred EEEEEECCCC-CeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFSDG-ELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fspdG-~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
+..|++.+.+ ++.++-...+.|++.+++... .+++.... -.....|++.|... .
T Consensus 473 P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~------------~~~l~~~~-----------l~~P~gIaVDp~~g--~ 527 (791)
T 3m0c_C 473 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------RKTLFREN-----------GSKPRAIVVDPVHG--F 527 (791)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSSS------------EEEEEECT-----------TCCEEEEEEETTTT--E
T ss_pred cceeeeeecCCcEEEEecCCCeEEEEeCCCCe------------EEEEEeCC-----------CCCcceEEEecCCC--C
Confidence 4578888766 455555667888888887421 12222111 02366788887632 4
Q ss_pred EEEe--eCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 85 FLLS--TNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 85 ~l~s--s~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
+..+ +....|...+++......+ ...-++|+++|.++.++++-...+.|...|+...
T Consensus 528 LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~ 590 (791)
T 3m0c_C 528 MYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 590 (791)
T ss_dssp EEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCC
Confidence 4443 2236787778765442211 1346789999877667676666788988888654
No 306
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=69.01 E-value=92 Score=31.28 Aligned_cols=17 Identities=12% Similarity=0.092 Sum_probs=14.2
Q ss_pred CCCCCeEEEeecccccc
Q psy12356 184 NRRKPAIRLCDMRAAAL 200 (400)
Q Consensus 184 ~~~dg~i~lWD~~~~~~ 200 (400)
++.||.++.+|.++++.
T Consensus 490 gt~dg~l~A~D~~tG~~ 506 (599)
T 1w6s_A 490 GTLDGYLKARDSDTGDL 506 (599)
T ss_dssp ECTTSEEEEEETTTCCE
T ss_pred ECCCCeEEEEECCCCCE
Confidence 45799999999998864
No 307
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=65.54 E-value=14 Score=38.20 Aligned_cols=112 Identities=10% Similarity=0.031 Sum_probs=64.5
Q ss_pred eEEEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..|++++ .|++.++-...+.|.+.+++... +.++..... .....|++.|.+.
T Consensus 454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~------------~~~l~~~~~-----------~~P~giavDp~~g-- 508 (699)
T 1n7d_A 454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK------------RKTLFREQG-----------SKPRAIVVDPVHG-- 508 (699)
T ss_dssp -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC------------EEEECCCSS-----------CCCCCEECCSSSS--
T ss_pred CcceEEEEeeCCcEEEEeccCCeEEEEecCCCc------------eEEEEeCCC-----------CCcceEEEccCCC--
Confidence 345778885 45555555567889888876421 112211100 1245577777542
Q ss_pred eEEEee-C-CCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 84 HFLLST-N-DQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss-~-D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
.+..+. . .+.|...+++....+.+ ...-++|+|+|+++.++++-+..+.|...|+...
T Consensus 509 ~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~ 572 (699)
T 1n7d_A 509 FMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG 572 (699)
T ss_dssp CCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS
T ss_pred cEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC
Confidence 344332 2 36777777654332111 1234679999987778787777889999998653
No 308
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=63.81 E-value=98 Score=29.06 Aligned_cols=117 Identities=9% Similarity=0.003 Sum_probs=64.6
Q ss_pred eEEEEEECCCCCeE-EEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELL-ATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~L-as~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..|+|++.++.| .+-...+.|+.+++++.... .. . .++.... -..+..|++.+.+. .
T Consensus 113 ~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-----~~--~-~~~~~~~-----------~~~p~glavD~~~~-~ 172 (400)
T 3p5b_L 113 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-----SS--Y-DTVISRD-----------IQAPDGLAVDWIHS-N 172 (400)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC-----------CC--C-EEEECSS-----------CSCEEEEEEETTTT-E
T ss_pred cceEEeeeeccCceEEEecCCCeEEEEEcccCCCC-----Cc--c-eEEEeCC-----------CCCcccEEEEecCC-c
Confidence 46789999855544 44445788888887642100 00 0 1111110 01255677765332 2
Q ss_pred eEEEeeCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeC-CCeEEEEecccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSS-KGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~-Dg~i~lWD~~~~ 141 (400)
.+.+-...+.|.+.+++....... ....++++++|.++.++.+-.. .+.|...++...
T Consensus 173 lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 173 IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 235 (400)
T ss_dssp EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence 333445677888888876542211 1236789999976666666533 467888887654
No 309
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=61.95 E-value=93 Score=28.19 Aligned_cols=111 Identities=7% Similarity=-0.029 Sum_probs=67.0
Q ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCce
Q psy12356 6 REASQRFS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAH 84 (400)
Q Consensus 6 v~~v~fsp-dG~~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~ 84 (400)
+..+++.+ +|++..+-...+.|.+++++... ...+.... -.....|++.|.+ +.
T Consensus 81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~------------~~~l~~~~-----------~~~P~giavdp~~--g~ 135 (318)
T 3sov_A 81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSL------------RKVLFWQE-----------LDQPRAIALDPSS--GF 135 (318)
T ss_dssp CCEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEECSS-----------CSSEEEEEEEGGG--TE
T ss_pred ccEEEEEcCCCeEEEEECCCCEEEEEECCCCc------------EEEEEeCC-----------CCCccEEEEeCCC--CE
Confidence 45688886 45555665667888888886421 11221111 0235678888754 24
Q ss_pred EEEee--CCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 85 FLLST--NDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 85 ~l~ss--~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
+..+. ..+.|...+++......+ -..-++++|+|+++.++.+-+..+.|..+|+...
T Consensus 136 ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~ 198 (318)
T 3sov_A 136 MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 198 (318)
T ss_dssp EEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred EEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCC
Confidence 44443 346777777764332111 1234789999977777777677889999998754
No 310
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=54.77 E-value=17 Score=38.95 Aligned_cols=41 Identities=15% Similarity=0.218 Sum_probs=33.7
Q ss_pred ccceeEEEEccCCCEEEE-ecCCeEEEEeCccCCeeEEEEeec
Q psy12356 335 TYHISSTSVNSDQETYLS-ADDLRINLWHLEITDQSFNIVDIK 376 (400)
Q Consensus 335 ~~~V~~i~fspDg~~las-~~D~~i~lW~~~~~~~~~~~~~~~ 376 (400)
...|.+++..+|..++.+ +.|+++|+|++.+ .+|....|+.
T Consensus 235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t-~~~v~t~dL~ 276 (950)
T 4gq2_M 235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIELS 276 (950)
T ss_dssp TTCEEEEEEETTTTEEEEEETTCEEEEEETTT-TEEEEEEECC
T ss_pred cceEEEEeecCCCcEEEEEECCCEEEEEECCC-CCeEeeeccc
Confidence 345778888899999988 5899999999986 5588888875
No 311
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=54.24 E-value=13 Score=37.35 Aligned_cols=28 Identities=14% Similarity=0.253 Sum_probs=23.1
Q ss_pred eEEEEECCCCcEEEEec--CCeEEEEeCCC
Q psy12356 227 ISDVKISNSGRYMISRD--YLCVKVWDLHM 254 (400)
Q Consensus 227 V~~v~fSpdg~~las~~--D~tIklWD~~~ 254 (400)
-..|..+|||++++.++ +.++-+.|++.
T Consensus 325 PHGv~vsPDGkyi~v~GKLsptvtV~d~~k 354 (638)
T 3sbq_A 325 PHGCNTSSDGKYFIAAGKLSPTCSMIAIDK 354 (638)
T ss_dssp CCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred CcceeeCCCCCEEEEcCCCCCeEEEEEeeh
Confidence 34689999999998653 78999999984
No 312
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=51.27 E-value=42 Score=30.98 Aligned_cols=66 Identities=9% Similarity=0.184 Sum_probs=43.5
Q ss_pred eeEEEEEeccCCceEEEeeCCCeEEEEEccCCCccc---c------cccEEEEEEecC---CCCEEEEEeCC-----CeE
Q psy12356 71 INKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNMEE---L------NEVITAAEFHPI---DCNLFVYSSSK-----GTI 133 (400)
Q Consensus 71 V~~v~~sp~~~~~~~l~ss~D~tI~lWd~~~~~~~~---~------~~~V~sv~f~p~---~~~~las~s~D-----g~i 133 (400)
...++|.|++ .++++..++.|++++ .+.... . ......++|+|+ ++.++++-..+ +.|
T Consensus 33 P~~ia~~pdG---~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v 107 (352)
T 2ism_A 33 PWALAFLPDG---GMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV 107 (352)
T ss_dssp EEEEEECTTS---CEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred ceEEEEcCCC---eEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence 5678999886 567766678998888 333110 0 134678999997 45666665543 567
Q ss_pred EEEecccc
Q psy12356 134 RLCDMRAA 141 (400)
Q Consensus 134 ~lWD~~~~ 141 (400)
..++...+
T Consensus 108 ~r~~~~~~ 115 (352)
T 2ism_A 108 VRLRHLGE 115 (352)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 77776643
No 313
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=49.22 E-value=15 Score=40.30 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=33.5
Q ss_pred cceeEEEEccCCCEEEE-ecCCeEEEEeCccCCeeEEEEeecC
Q psy12356 336 YHISSTSVNSDQETYLS-ADDLRINLWHLEITDQSFNIVDIKP 377 (400)
Q Consensus 336 ~~V~~i~fspDg~~las-~~D~~i~lW~~~~~~~~~~~~~~~~ 377 (400)
..|.+++..+|.++|.+ +.|+++|+|++.+ .+|....|+.-
T Consensus 238 ~~~vs~~~~~~~~~lftL~~D~~LRiWsl~t-~~~v~t~DL~~ 279 (1139)
T 4fhn_B 238 NTIISMIFLSTYNVLVMLSLDYKLKVLDLST-NQCVETIELSQ 279 (1139)
T ss_dssp TCBSCCEEETTTTEEEEEBTTCEEEEEETTT-TEEEEEEECCC
T ss_pred ceeEEeeccCCccEEEEEeCCCEEEEEECCC-CCeEEeechhh
Confidence 45667888899999988 5799999999986 55888888753
No 314
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=47.52 E-value=2.3e+02 Score=28.38 Aligned_cols=113 Identities=9% Similarity=0.004 Sum_probs=63.3
Q ss_pred eEEEEEECCCCCeEEEec-CCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELLATGD-KGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s-~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..|+|++.++.|.-+. ..+.|+.+++++.. .....+.. . -..+..|++.+.+.
T Consensus 41 ~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~----------~~~~v~~~-~-----------~~~P~GlAvD~~~~-- 96 (619)
T 3s94_A 41 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE----------SVQNVVVS-G-----------LLSPDGLACDWLGE-- 96 (619)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEEC---------------CEEEECS-S-----------CSCEEEEEEETTTT--
T ss_pred ceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC----------ceEEEEeC-C-----------CCCcCeEEEEecCC--
Confidence 467889998666655444 46788888886421 00011111 0 01356778776542
Q ss_pred eEEE-eeCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEe-CCCeEEEEecccc
Q psy12356 84 HFLL-STNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSS-SKGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~-ss~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s-~Dg~i~lWD~~~~ 141 (400)
.+.. -...+.|.+-+++....+.+ ...-.+++++|.++.++.+-- ..+.|...++...
T Consensus 97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~ 160 (619)
T 3s94_A 97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS 160 (619)
T ss_dssp EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence 4444 45678899999876542211 123457899997666666652 2456666665543
No 315
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=45.94 E-value=1.9e+02 Score=26.95 Aligned_cols=117 Identities=9% Similarity=0.064 Sum_probs=65.9
Q ss_pred eeEEEEEE--CCC-CC-eEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEec
Q psy12356 4 YMREASQR--FSD-GE-LLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRR 79 (400)
Q Consensus 4 ~~v~~v~f--spd-G~-~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~ 79 (400)
+.++.+++ +|+ |+ ++.....+|.+..|++..... ..-..+.+++|.-.. .+..+..-+.
T Consensus 128 ~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~----g~~~~~lVR~f~lgs-------------q~EgcvvDd~ 190 (355)
T 3amr_A 128 NEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKN----GYISGKKVRAFKMNS-------------QTEGMAADDE 190 (355)
T ss_dssp SSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTT----SCEEEEEEEEEECSS-------------CEEEEEEETT
T ss_pred CCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCC----CcccceEEEEecCCC-------------CcceEEEcCC
Confidence 44566777 774 54 677778889999999853210 001334556665432 2445666543
Q ss_pred cCCceEEEeeCCCeEEEEEccCC-----Cc------ccccccEEEEEE--ecCCC-CEEEEEeCCCeEEEEecc
Q psy12356 80 KNQAHFLLSTNDQSFNIVDIKPT-----NM------EELNEVITAAEF--HPIDC-NLFVYSSSKGTIRLCDMR 139 (400)
Q Consensus 80 ~~~~~~l~ss~D~tI~lWd~~~~-----~~------~~~~~~V~sv~f--~p~~~-~~las~s~Dg~i~lWD~~ 139 (400)
. +++.++-.|.-|.-+|.+.. .. ..+...+..+++ .+++. .+|+|+-.+.+..++|.+
T Consensus 191 ~--g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 191 Y--GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp T--TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred C--CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 3 36667766644433343321 11 112235777887 44433 344554458899999986
No 316
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=41.20 E-value=37 Score=29.80 Aligned_cols=54 Identities=6% Similarity=-0.018 Sum_probs=36.0
Q ss_pred ceEEEEEcCCCcEEeecccchhh----c-------ccccce--------eEEEEccCCCEEEEecCCeEEEEeC
Q psy12356 309 HINSISVNSDQLTVEASPRGIFA----D-------AHTYHI--------SSTSVNSDQETYLSADDLRINLWHL 363 (400)
Q Consensus 309 ~i~~i~~s~dg~~~~~~~~~~~~----~-------gh~~~V--------~~i~fspDg~~las~~D~~i~lW~~ 363 (400)
.+..++|.|||.+.+....++|. . +-...| ..+.|.|+|.+.++ .|+.|.-|+-
T Consensus 42 ~~~~laf~P~G~LYaV~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~p 114 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGVLNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASP 114 (236)
T ss_dssp TCSEEEECTTSCEEEEETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESC
T ss_pred cceeEEECCCccEEEEeCCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe-CCCEEEEeCC
Confidence 35688999999877653222221 0 112334 68999999999999 6688876664
No 317
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=36.07 E-value=3.4e+02 Score=27.08 Aligned_cols=113 Identities=9% Similarity=-0.015 Sum_probs=66.7
Q ss_pred eeEEEEEECCCCC-eEEEecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCC
Q psy12356 4 YMREASQRFSDGE-LLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQ 82 (400)
Q Consensus 4 ~~v~~v~fspdG~-~Las~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~ 82 (400)
..+..+++++.++ +.++-...+.|.+.++++.. .+++.... -.....|++.|..
T Consensus 84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~------------~~~l~~~~-----------l~~P~~Iavdp~~-- 138 (619)
T 3s94_A 84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL------------RKVLFWQE-----------LDQPRAIALDPSS-- 138 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS------------CEEEECSS-----------CSCCCCEEEETTT--
T ss_pred CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC------------EEEEEeCC-----------CCCCceEEEecCC--
Confidence 3567899998554 55555667899999987421 11221110 0125567887753
Q ss_pred ceEEEee--CCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEEeCCCeEEEEecccc
Q psy12356 83 AHFLLST--NDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141 (400)
Q Consensus 83 ~~~l~ss--~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~ 141 (400)
+.+..+. ....|..-+++....... ...-++++++|+++.++.+-...+.|...|+...
T Consensus 139 g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~ 203 (619)
T 3s94_A 139 GFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGT 203 (619)
T ss_dssp TEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCC
T ss_pred CeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCC
Confidence 2444432 234555555554332111 1235789999977677777666788999888764
No 318
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=34.47 E-value=1e+02 Score=27.87 Aligned_cols=62 Identities=13% Similarity=0.132 Sum_probs=33.7
Q ss_pred EEEeccCCceEEEee----CCCeEEEEEccCCCccccc-ccEEEEEEecCCCCEEEEEeC-CCeEEEEecccc
Q psy12356 75 RWLRRKNQAHFLLST----NDQSFNIVDIKPTNMEELN-EVITAAEFHPIDCNLFVYSSS-KGTIRLCDMRAA 141 (400)
Q Consensus 75 ~~sp~~~~~~~l~ss----~D~tI~lWd~~~~~~~~~~-~~V~sv~f~p~~~~~las~s~-Dg~i~lWD~~~~ 141 (400)
.|+|+++ .+.-+. .+..|...+++....+.+. ..+ .+|+|+++. |...+. +.+|..-++..+
T Consensus 110 ~~s~~g~--~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~ 177 (302)
T 3s25_A 110 YASLIGN--YIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRY-FYYNNPKNGQLYRYDTASQ 177 (302)
T ss_dssp EEEEETT--EEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTE-EEEECTTTCCEEEEETTTT
T ss_pred EEEEeCC--EEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCE-EEEEeCCCceEEEEECCCC
Confidence 5777764 555443 3445666666654432221 122 457887654 454444 567777776654
No 319
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=33.55 E-value=3.8e+02 Score=26.83 Aligned_cols=113 Identities=8% Similarity=-0.020 Sum_probs=64.6
Q ss_pred eEEEEEECCCCCeEE-EecCCCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCc
Q psy12356 5 MREASQRFSDGELLA-TGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQA 83 (400)
Q Consensus 5 ~v~~v~fspdG~~La-s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~ 83 (400)
.+..|+|++++..|- +-..+++|+.+++++.. .+ ++..... ..+..|++.+.+. .
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~---------~~---~v~~~g~-----------~~P~GlAvD~~~~-~ 93 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSA---------LE---HVVEFGL-----------DYPEGMAVDWLGK-N 93 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---------CE---EEECSSC-----------SCCCEEEEETTTT-E
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCC---------cE---EEEeCCC-----------CCcceEEEEeCCC-E
Confidence 466899998655554 55567899999887421 01 1111000 1234566654432 2
Q ss_pred eEEEeeCCCeEEEEEccCCCcccc----cccEEEEEEecCCCCEEEEE-eCCCeEEEEecccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNMEEL----NEVITAAEFHPIDCNLFVYS-SSKGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~~~----~~~V~sv~f~p~~~~~las~-s~Dg~i~lWD~~~~ 141 (400)
.+.+-...+.|.+-+++....+.+ ...-++++++|..+.++.+- +..+.|...++...
T Consensus 94 LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~ 156 (628)
T 4a0p_A 94 LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGS 156 (628)
T ss_dssp EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCC
Confidence 333435567888888765432111 12357999999766666664 23567777777654
No 320
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=32.82 E-value=60 Score=33.53 Aligned_cols=36 Identities=14% Similarity=0.262 Sum_probs=27.7
Q ss_pred ceeEEEEccCCCEEEE-ecCCeEEEEeCccCCeeEEEEee
Q psy12356 337 HISSTSVNSDQETYLS-ADDLRINLWHLEITDQSFNIVDI 375 (400)
Q Consensus 337 ~V~~i~fspDg~~las-~~D~~i~lW~~~~~~~~~~~~~~ 375 (400)
.|.++.+ +..+|++ +.|.++|+|++.+ .++....|+
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t-~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTS-FTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTT-TEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCC-CceEEeecc
Confidence 3444443 5778888 6899999999996 568899998
No 321
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=31.60 E-value=3.2e+02 Score=25.37 Aligned_cols=56 Identities=11% Similarity=0.121 Sum_probs=38.1
Q ss_pred EEEeeCCCeEEEEEccCCCccc---ccccEEEEEEecCCCCEEEEEeCCCeEEEEeccc
Q psy12356 85 FLLSTNDQSFNIVDIKPTNMEE---LNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRA 140 (400)
Q Consensus 85 ~l~ss~D~tI~lWd~~~~~~~~---~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~ 140 (400)
++.-+....|+..|+++..... ....+.+++|++.++.++.+-...+.|+.+++..
T Consensus 85 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g 143 (400)
T 3p5b_L 85 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDR 143 (400)
T ss_dssp EEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--
T ss_pred eeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEccc
Confidence 4443445788888987765321 1245779999997666777767788999999876
No 322
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.96 E-value=43 Score=35.86 Aligned_cols=31 Identities=6% Similarity=-0.109 Sum_probs=26.9
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCC
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPL 35 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~ 35 (400)
.|.++...+|..+|.+-+.|+++|||++.++
T Consensus 237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~ 267 (950)
T 4gq2_M 237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTN 267 (950)
T ss_dssp CEEEEEEETTTTEEEEEETTCEEEEEETTTT
T ss_pred eEEEEeecCCCcEEEEEECCCEEEEEECCCC
Confidence 4567778889999999999999999999865
No 323
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=30.65 E-value=3.3e+02 Score=25.32 Aligned_cols=142 Identities=10% Similarity=0.213 Sum_probs=80.7
Q ss_pred CCCeEEEEEccCCCc---ccccccEEEEEEecCCCCEEEEEeCCCeEEEEecccccccccccceeccCcccceeceeccC
Q psy12356 90 NDQSFNIVDIKPTNM---EELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPE 166 (400)
Q Consensus 90 ~D~tI~lWd~~~~~~---~~~~~~V~sv~f~p~~~~~las~s~Dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (400)
.+.+|.|-|+..+.- +.... -+.-.||.. +.+|--. ..+++++|+.+..-+..|.- . .....|.- +
T Consensus 47 ~~~~VvIiDl~n~~~~~Rrpi~A--dsAIMnP~~-~ViALra-g~~LQiFnletK~klks~~~---~-e~VvfWkW-i-- 115 (365)
T 2xzh_A 47 EQAQVVIIDMNDPSNPIRRPISA--DSAIMNPAS-KVIALKA-GKTLQIFNIEMKSKMKAHTM---T-DDVTFWKW-I-- 115 (365)
T ss_dssp TEEEEEEEETTSTTSCEEEECCC--SEEEECSSS-SEEEEEE-TTEEEEEETTTTEEEEEEEC---S-SCEEEEEE-C--
T ss_pred CCCEEEEEECCCCCCcccccccc--ceeeeCCCc-cEEEEec-CCeEEEechHHhhhhcceec---C-CccEEEEe-c--
Confidence 345889999987552 11111 123358974 5665544 68899999998843221110 0 00111210 0
Q ss_pred chhhhhhcccCcceeecCCCCCeEEEeecccccccCcccccccCCCCCCCcccccccccCeEEEEECCCCcEEE-Ee---
Q psy12356 167 SKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI-SR--- 242 (400)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~dg~i~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fSpdg~~la-s~--- 242 (400)
.++..+..+ +..|.-|++.. ...+.+.|..+.. +. ...|-.-+-+++.++++ .+
T Consensus 116 --------s~~~L~lVT---~taVyHWs~~~---~s~P~kvFdR~~~------L~--~~QIInY~~d~~~kW~~l~GI~~ 173 (365)
T 2xzh_A 116 --------SLNTVALVT---DNAVYHWSMEG---ESQPVKMFDRHSS------LA--GCQIINYRTDAKQKWLLLTGISA 173 (365)
T ss_dssp --------SSSEEEEEE---SSEEEEEESST---TCCCEEEEECCGG------GT--TCEEEEEEECTTSCEEEEEEEEE
T ss_pred --------CCCeEEEEc---CCcEEEEcccC---CCCCceeeecchh------cc--cceEEEEEECCCCCEEEEEeEec
Confidence 123334444 56889999865 2345566654321 11 13576777899999876 22
Q ss_pred c----CCeEEEEeCCCCCCceeeecCCC
Q psy12356 243 D----YLCVKVWDLHMESRPVETYPTHT 266 (400)
Q Consensus 243 ~----D~tIklWD~~~~~~~l~~~~~h~ 266 (400)
. .|.+.|+..+.. .-+.++||.
T Consensus 174 ~~~~v~G~mQLYS~er~--~sQ~ieGha 199 (365)
T 2xzh_A 174 QQNRVVGAMQLYSVDRK--VSQPIEGHA 199 (365)
T ss_dssp ETTEEEEEEEEEETTTT--EEEEECCSE
T ss_pred cCCccceeEEEEeeccc--ccceeeeee
Confidence 2 478999999964 346788984
No 324
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=30.59 E-value=1.4e+02 Score=26.87 Aligned_cols=25 Identities=8% Similarity=-0.126 Sum_probs=16.2
Q ss_pred EEECCCCCeEEEec--CC--CeEEEEEcC
Q psy12356 9 SQRFSDGELLATGD--KG--GRVVIFQRD 33 (400)
Q Consensus 9 v~fspdG~~Las~s--~D--g~I~iwd~~ 33 (400)
..|+|+|++|+=.+ .+ ..|..-+++
T Consensus 109 ~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d 137 (302)
T 3s25_A 109 IYASLIGNYIYYLHYDTQTATSLYRIRID 137 (302)
T ss_dssp EEEEEETTEEEEEEESSSSCEEEEEEETT
T ss_pred cEEEEeCCEEEEEeecCCCCceEEEEECC
Confidence 46888999988665 33 445555554
No 325
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=24.97 E-value=77 Score=32.71 Aligned_cols=29 Identities=7% Similarity=0.040 Sum_probs=23.6
Q ss_pred eEEEEEECCCCCeEEEecCCCeEEEEEcCCC
Q psy12356 5 MREASQRFSDGELLATGDKGGRVVIFQRDPL 35 (400)
Q Consensus 5 ~v~~v~fspdG~~Las~s~Dg~I~iwd~~~~ 35 (400)
+|.++.+ +..+|++-+.|+++|+||+.++
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~ 251 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSF 251 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTT
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCC
Confidence 4566555 4779999999999999999875
No 326
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=24.73 E-value=4.1e+02 Score=28.99 Aligned_cols=57 Identities=11% Similarity=0.300 Sum_probs=39.9
Q ss_pred eEEEeeCCCeEEEEEccCCCcc-----cccccEEEEEEecCC-----CCEEEEEeC-CCeEEEEecccc
Q psy12356 84 HFLLSTNDQSFNIVDIKPTNME-----ELNEVITAAEFHPID-----CNLFVYSSS-KGTIRLCDMRAA 141 (400)
Q Consensus 84 ~~l~ss~D~tI~lWd~~~~~~~-----~~~~~V~sv~f~p~~-----~~~las~s~-Dg~i~lWD~~~~ 141 (400)
+++.++ ++.+.+..++.+++. .+...|.++++.|.. ...+|.|.. |++++|..+..-
T Consensus 525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l 592 (1158)
T 3ei3_A 525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF 592 (1158)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC
T ss_pred EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC
Confidence 566554 577777777765532 234679999998642 257788875 999999998753
No 327
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=21.76 E-value=48 Score=36.25 Aligned_cols=29 Identities=7% Similarity=-0.082 Sum_probs=24.6
Q ss_pred EEEEECCCCCeEEEecCCCeEEEEEcCCC
Q psy12356 7 EASQRFSDGELLATGDKGGRVVIFQRDPL 35 (400)
Q Consensus 7 ~~v~fspdG~~Las~s~Dg~I~iwd~~~~ 35 (400)
.+++..++..+|.+-+.|+++|||++.++
T Consensus 241 vs~~~~~~~~~lftL~~D~~LRiWsl~t~ 269 (1139)
T 4fhn_B 241 ISMIFLSTYNVLVMLSLDYKLKVLDLSTN 269 (1139)
T ss_dssp SCCEEETTTTEEEEEBTTCEEEEEETTTT
T ss_pred EEeeccCCccEEEEEeCCCEEEEEECCCC
Confidence 44556778899999999999999999875
No 328
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=20.99 E-value=1.6e+02 Score=29.70 Aligned_cols=81 Identities=11% Similarity=0.034 Sum_probs=45.9
Q ss_pred EEEEECCCCCeEEEecC-CCeEEEEEcCCCCccccCCCCcceeeeeeeccCcchhhcccccccceeeEEEEEeccCCceE
Q psy12356 7 EASQRFSDGELLATGDK-GGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHF 85 (400)
Q Consensus 7 ~~v~fspdG~~Las~s~-Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~v~~sp~~~~~~~ 85 (400)
..|.++|||++++.++. +.+|-|+|+++....... +-.++..+..+ ..+..-+....+|.+++ ..
T Consensus 326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~--k~~~~~~~~~a---------e~e~GlGPlHt~Fd~~G---~a 391 (638)
T 3sbq_A 326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAG--KLADPRDVIVG---------EPELGLGPLHTTFDGRG---NA 391 (638)
T ss_dssp CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTT--CCSCGGGGEEE---------CCBCCSCEEEEEECSSS---EE
T ss_pred cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhc--cccCcccceEe---------eccCCCcccEEEECCCC---ce
Confidence 46899999999987664 789999998741100000 00001111111 11112335677887655 33
Q ss_pred EEee-CCCeEEEEEccC
Q psy12356 86 LLST-NDQSFNIVDIKP 101 (400)
Q Consensus 86 l~ss-~D~tI~lWd~~~ 101 (400)
.++- -|..|--|+++.
T Consensus 392 YTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 392 YTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp EEEETTTTEEEEEEHHH
T ss_pred EeeeeecceEEEEeccH
Confidence 3443 589999999864
Done!