RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy12356
(400 letters)
>gnl|CDD|227498 COG5170, CDC55, Serine/threonine protein phosphatase 2A, regulatory
subunit [Signal transduction mechanisms].
Length = 460
Score = 107 bits (268), Expect = 1e-25
Identities = 61/166 (36%), Positives = 86/166 (51%), Gaps = 29/166 (17%)
Query: 222 EIISSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITA 281
E I++I + +++S + +K+W ++ ++ V + + + P T
Sbjct: 86 EKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTK 145
Query: 282 -LRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISS 340
L +P++ + + A P R++ANAH YHINSIS NSD+
Sbjct: 146 ELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK--------------------- 184
Query: 341 TSVNSDQETYLSADDLRINLWHLEITDQSFNIVDIKPTNMEELNEV 386
ET LSADDLRINLW+LEI D SFNIVDIKP NMEEL EV
Sbjct: 185 -------ETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEV 223
Score = 104 bits (260), Expect = 2e-24
Identities = 51/103 (49%), Positives = 64/103 (62%), Gaps = 6/103 (5%)
Query: 15 GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKI 74
G LATGDKGGRVV+F+R+ EY ++ FQSHE EFDYLKSLEIEEKIN I
Sbjct: 38 GLYLATGDKGGRVVLFEREKS------YGCEYKFFTEFQSHELEFDYLKSLEIEEKINAI 91
Query: 75 RWLRRKNQAHFLLSTNDQSFNIVDIKPTNMEELNEVITAAEFH 117
W + HFLLSTND++ + I N++ + E + FH
Sbjct: 92 EWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFH 134
Score = 98.6 bits (245), Expect = 2e-22
Identities = 43/63 (68%), Positives = 49/63 (77%)
Query: 87 LSTNDQSFNIVDIKPTNMEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDR 146
L D SFNIVDIKP NMEEL EVIT+AEFHP CN+F+YSSSKG I+L D+R +ALCD
Sbjct: 200 LEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN 259
Query: 147 HSK 149
K
Sbjct: 260 SKK 262
Score = 97.8 bits (243), Expect = 3e-22
Identities = 41/79 (51%), Positives = 55/79 (69%)
Query: 187 KPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLC 246
K I+L D+R +ALCD K FE D + FF EI+SSISD K S++GRY++SRDYL
Sbjct: 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLT 302
Query: 247 VKVWDLHMESRPVETYPTH 265
VK+WD++M P++T P H
Sbjct: 303 VKIWDVNMAKNPIKTIPMH 321
>gnl|CDD|225314 COG2516, COG2516, Biotin synthase-related enzyme [General function
prediction only].
Length = 339
Score = 31.3 bits (71), Expect = 0.95
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 22/103 (21%)
Query: 19 ATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLR 78
+GG V +F PL T + R +P +E KI R+L
Sbjct: 210 RVRKRGGIVSLFAFTPLKGTQMENR------------KPP-----PVERYRKIQVARYLI 252
Query: 79 RKNQAHFLLSTNDQSFNIVDIKPTNMEELNEVITAAEFHPIDC 121
+ D+ N++D P ME + + F C
Sbjct: 253 GNGEVDLEDFEFDEFGNLIDSIPKVME-----VPPSPFRTRGC 290
>gnl|CDD|111689 pfam02819, Toxin_9, Spider toxin. This family of spider
neurotoxins are thought to be calcium ion channel
inhibitors.
Length = 43
Score = 27.5 bits (61), Expect = 1.6
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 130 KGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLI 163
KG C+ R KC I TNC C+ LI
Sbjct: 10 KGGKPCCE-------GRPCKCNIMMTNCECKKLI 36
>gnl|CDD|132095 TIGR03051, PS_I_psaG_plant, photosystem I reaction center subunit
V, chloroplast.
Length = 88
Score = 28.3 bits (63), Expect = 2.1
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 78 RRKNQAHFLLSTNDQSFNIVDI 99
A L S + FN+VD+
Sbjct: 44 DALQYASLLKSNDPAGFNLVDV 65
>gnl|CDD|213797 TIGR03333, salvage_mtnX,
2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate
phosphatase. Members of this family are the methionine
salvage enzyme MnxX, a member of the HAD-superfamily
hydrolases, subfamily IB (see TIGR01488). Members are
found in Bacillus subtilis and related species, paired
with MtnW (TIGR03332). In most species that recycle
methionine from methylthioadenosine, the single protein
MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX
was first known as ykrX [Amino acid biosynthesis,
Aspartate family, Central intermediary metabolism,
Sulfur metabolism].
Length = 214
Score = 29.0 bits (65), Expect = 3.5
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 223 IISSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETY 262
I S++DV+ + +RDYL + +L + P + +
Sbjct: 162 IGDSVTDVEAAKQSDLCFARDYLLNECEELGLNHAPFQDF 201
>gnl|CDD|240575 cd12960, Spider_toxin, Spider neurotoxins including agatoxin,
purotoxin and ctenitoxin. This domain family contains
spider toxins that include the omega-Aga-IVB, a P-type
calcium channel antagonist from venom of the funnel web
spider, Agelenopsis aperta, as well as purotoxin-1
(PT1), a spider peptide venom of the Central Asian
spider Geolycosa sp., which specifically exerts
inhibitory action on P2X3 purinoreceptors at nanomolar
concentrations. These spider toxins, which are ion
channel blockers, share a common structural motif
composed of a triple-stranded antiparallel beta-sheet,
stabilized by internal disulfide bonds known as cystine
knots.
Length = 36
Score = 25.8 bits (57), Expect = 4.5
Identities = 11/26 (42%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 136 CDMRAAALCD-RHSKCLIEGTNCNCQ 160
CD C+ R KC + GTNC C+
Sbjct: 9 CDKGPTPCCEGRPCKCNLWGTNCKCK 34
>gnl|CDD|178151 PLN02536, PLN02536, diaminopimelate epimerase.
Length = 267
Score = 29.0 bits (65), Expect = 4.6
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 183 DNRRKPAIRLCDMRAAALCDRH 204
DNR +L +A LCDR+
Sbjct: 2 DNRDSSEPKLTPEQAVKLCDRN 23
>gnl|CDD|241247 cd01211, PTB_Rab6GAP, GTPase activating protein for Rab 6
Phosphotyrosine-binding (PTB) domain. GAPCenA is a
centrosome-associated GTPase activating protein (GAP)
for Rab 6. It consists of an N-terminal PTB domain and a
C-terminal TBC domain. PTB domains have a common PH-like
fold and are found in various eukaryotic signaling
molecules. This domain was initially shown to binds
peptides with a NPXY motif with differing requirements
for phosphorylation of the tyrosine, although more
recent studies have found that some types of PTB domains
can bind to peptides lack tyrosine residues altogether.
In contrast to SH2 domains, which recognize
phosphotyrosine and adjacent carboxy-terminal residues,
PTB-domain binding specificity is conferred by residues
amino-terminal to the phosphotyrosine. PTB domains are
classified into three groups: phosphotyrosine-dependent
Shc-like, phosphotyrosine-dependent IRS-like, and
phosphotyrosine-independent Dab-like PTB domains. This
cd is part of the Dab-like subgroup.
Length = 131
Score = 27.6 bits (62), Expect = 6.2
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 4/35 (11%)
Query: 103 NMEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCD 137
M L E PI L V +SS+G++RL D
Sbjct: 26 IMAILREQSAQ----PIKVTLSVPNSSEGSVRLYD 56
>gnl|CDD|147477 pfam05309, TraE, TraE protein. This family consists of several
bacterial sex pilus assembly and synthesis proteins
(TraE). Conjugal transfer of plasmids from donor to
recipient cells is a complex process in which a
cell-to-cell contact plays a key role. Many genes
encoded by self-transmissible plasmids are required for
various processes of conjugation, including pilus
formation, stabilisation of mating pairs, conjugative
DNA metabolism, surface exclusion and regulation of
transfer gene expression. The exact function of the TraE
protein is unknown.
Length = 187
Score = 28.1 bits (63), Expect = 7.4
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
Query: 285 PQIKPIELTVEASPRRIFAN--AHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTS 342
++K EL EA +RI + + ++I SI V+ D LTV+ RG T+ + + +
Sbjct: 106 GRLKA-ELVEEA--KRIKGSNISSAFYITSIRVDPDTLTVDV--RGTL---KTW-VGNQA 156
Query: 343 VNSDQETY---LSADDLRINL 360
S+++TY S + + L
Sbjct: 157 PTSERKTYRLQWSYEGGSLWL 177
>gnl|CDD|176922 cd08914, START_STARD15-like, Lipid-binding START domain of
mammalian STARD15 and related proteins. This subgroup
includes the steroidogenic acute regulatory protein
(StAR)-related lipid transfer (START) domains of
STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA
hydrolase/CACH, THEAL, and MGC105114) and related
domains. It belongs to the START domain family, and in
turn to the SRPBCC
(START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain
superfamily of proteins that bind hydrophobic ligands.
SRPBCC domains have a deep hydrophobic ligand-binding
pocket. STARD15/ACOT12 is a type II acetyl-CoA
thioesterase; it catalyzes the hydrolysis of acyl-CoAs
to free fatty acid and CoASH. Rat CACH hydrolyzes
acetyl-CoA to acetate and CoA. In addition to having a
START domain, most proteins in this subgroup have two
tandem copies of the hotdog domain. Human STARD15/ACOT12
may have roles in cholesterol metabolism and in
beta-oxidation.
Length = 236
Score = 27.6 bits (61), Expect = 9.9
Identities = 24/86 (27%), Positives = 35/86 (40%), Gaps = 7/86 (8%)
Query: 230 VKISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRVPQIKP 289
VK Y + D+ +WD H S V E+ Q+ +IT V KP
Sbjct: 86 VKRPAHLAYRLLSDFTKRPLWDPHFLSCEV----IDWVSEDDQI---YHITCPIVNNDKP 138
Query: 290 IELTVEASPRRIFANAHTYHINSISV 315
+L V S R+ + +TY + SV
Sbjct: 139 KDLVVLVSRRKPLKDGNTYVVAVKSV 164
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.132 0.385
Gapped
Lambda K H
0.267 0.0611 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 20,006,286
Number of extensions: 1883515
Number of successful extensions: 1635
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1632
Number of HSP's successfully gapped: 24
Length of query: 400
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 301
Effective length of database: 6,546,556
Effective search space: 1970513356
Effective search space used: 1970513356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.1 bits)