RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy12356
(400 letters)
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha
isoform; holoenzyme, PR55, WD repeat, hydrolase, iron,
manganese binding, methylation, phosphoprotein, protein
phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Length = 447
Score = 174 bits (441), Expect = 4e-50
Identities = 142/303 (46%), Positives = 168/303 (55%), Gaps = 61/303 (20%)
Query: 12 FS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEK 70
F+ GELLATGDKGGRVVIFQ++ +K RGEYNVYSTFQSHEPEFDYLKSLEIEEK
Sbjct: 36 FNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK 95
Query: 71 INKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNMEELNE--------------------- 109
INKIRWL +KN A FLLSTND++ + I +
Sbjct: 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVP 155
Query: 110 -----------------------VITAAEFHPIDCNLFVYSSSKGTIRLCDM----RAAA 142
I + + D ++ S+ I L + R+
Sbjct: 156 VFRPMDLMVEASPRRIFANAHTYHINSISINS-DYETYL-SADDLRINLWHLEITDRSFN 213
Query: 143 LCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCD 202
+ D + E T P S SS K IRLCDMRA+ALCD
Sbjct: 214 IVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----------KGTIRLCDMRASALCD 263
Query: 203 RHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETY 262
RHSK FEEPEDP+N+SFFSEIISSISDVK S+SGRYM++RDYL VKVWDL+ME+RPVETY
Sbjct: 264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMENRPVETY 323
Query: 263 PTH 265
H
Sbjct: 324 QVH 326
Score = 99.1 bits (246), Expect = 6e-23
Identities = 83/179 (46%), Positives = 104/179 (58%), Gaps = 30/179 (16%)
Query: 208 FEEPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHTK 267
E D E I+ I + N+ ++++S + +K+W + + E Y
Sbjct: 80 HEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKE- 138
Query: 268 EENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVEASPR 327
E+G+ RDP+ +T LRVP +P++L VEASPRRIFANAHTYHINSI
Sbjct: 139 -EDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI-------------- 183
Query: 328 GIFADAHTYHISSTSVNSDQETYLSADDLRINLWHLEITDQSFNIVDIKPTNMEELNEV 386
S+NSD ETYLSADDLRINLWHLEITD+SFNIVDIKP NMEEL EV
Sbjct: 184 --------------SINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEV 228
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 59.1 bits (142), Expect = 1e-09
Identities = 55/426 (12%), Positives = 124/426 (29%), Gaps = 118/426 (27%)
Query: 4 YMREASQRFSDGELLATGDKGGRVVIFQRDPLSKT-----SIPKRGEYNVYSTF--QSHE 56
+ S E+ D +I +D +S T ++ + E + F +
Sbjct: 41 MPKSI---LSKEEI----DH----IIMSKDAVSGTLRLFWTLLSKQE-EMVQKFVEEVLR 88
Query: 57 PEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQSF---NIVDIKPTNMEELNEVITA 113
+ +L S E+ R + L ++Q F N+ ++P +L + +
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQP--YLKLRQALLE 146
Query: 114 AEFHPIDCNLFVYS---SSKGTIRLCDMRAAALCDRHS-KCLIEG-------TNCNCQGL 162
N+ + S K + A +C + +C ++ NCN
Sbjct: 147 LRPAK---NVLIDGVLGSGKTWV------ALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 163 IVPESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSE 222
++ ++ Q N + D+ +R+ ++ + +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-----AELRRLLKSKPYEN-----CL 247
Query: 223 IISSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITAL 282
++ + +V+ + ++L + + T T R L
Sbjct: 248 LV--LLNVQNAK-----------AWNAFNLS--CKILLT----T-------RFKQVTDFL 281
Query: 283 RVPQIKPIE-------LTVEASPRRIFANAHTYHINSISVNSDQLTVEA---SPR--GIF 330
I LT + + + + L E +PR I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEV-KSLLLKY-------LDCRPQDLPREVLTTNPRRLSII 333
Query: 331 ADAHTYHISSTSVNSDQETYLSADDLRINLWHLEITDQSFNIVDIKPTNMEELNEVREIY 390
A++ + + W D+ I++ +E E R+++
Sbjct: 334 AES-----------------IRDGLATWDNWKHVNCDKLTTIIESSLNVLEP-AEYRKMF 375
Query: 391 YLLLLF 396
L +F
Sbjct: 376 DRLSVF 381
Score = 36.0 bits (82), Expect = 0.021
Identities = 31/178 (17%), Positives = 52/178 (29%), Gaps = 52/178 (29%)
Query: 17 LLATGDKGGRVVIFQRDPLSKTSIPKRGE--------YNVYSTFQSHE----PEFDY--- 61
L+ K + I K + YN+ TF S + Y
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 62 -----LKSLEIEEKIN---KI----RWLRRK--------NQAHFLLST-NDQSF---NIV 97
LK++E E++ + R+L +K N + +L+T F I
Sbjct: 476 HIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC 535
Query: 98 DIKPTNMEELNEVITAAEFHPIDCNLFVYSSSKGTIR--LCDMRAAALCDRHSKCLIE 153
D P +N ++ F+ + I D+ AL E
Sbjct: 536 DNDPKYERLVNAILD-----------FLPKIEENLICSKYTDLLRIALMAEDEAIFEE 582
Score = 34.1 bits (77), Expect = 0.088
Identities = 68/495 (13%), Positives = 135/495 (27%), Gaps = 161/495 (32%)
Query: 5 MREASQRFSDGELLAT-GDKG-GRVVIFQRDPLSKTSIPKRGEYNVY--STFQSHEPE-- 58
+R+A + + G G G+ + D + + ++ ++ + + PE
Sbjct: 140 LRQALLELRPAKNVLIDGVLGSGKTWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198
Query: 59 FDYLKSL----------------EIEEKINKIR-WLRR--KNQAH--------------- 84
+ L+ L I+ +I+ I+ LRR K++ +
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258
Query: 85 ---F------LLSTNDQSFNIVDI------KPTNMEELNEVITAAEFHPIDCNLFVYSSS 129
F LL+T + + D +++ + +T E
Sbjct: 259 WNAFNLSCKILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDE-------------V 303
Query: 130 KGTIRLC-DMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSSQNRREKEDNRRKP 188
K + D R L + I+ ES R+ + N + ++
Sbjct: 304 KSLLLKYLDCRPQDL--PREVLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTT 357
Query: 189 AIRLC-------DMRAAALCDRHSKFFEE----PED---PTN---------KSFFSEII- 224
I + R K F+ P PT ++
Sbjct: 358 IIESSLNVLEPAEYR---------KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 225 ------SSI-SDVKISNSGRYMISRDYL--CVKVWDLHMESRPVETYPTHTKEENGQLRD 275
S + K S I + + LH V+ Y D
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH--RSIVDHYNIPKT------FD 460
Query: 276 PSNITALRVPQ---------IKPIELTVEASP-RRIFANAHTYHI--NSISVNSDQLTVE 323
++ + Q +K IE + R +F + + I +S
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD---FRFLEQKIRHDSTAWNAS 517
Query: 324 ASPRGIFADAHTY--HISSTSVNSDQETYLSA--DDLRINLWHLEITDQSFNIVDIKPTN 379
S Y +I D + + + L +E N++ K T+
Sbjct: 518 GSILNTLQQLKFYKPYI------CDNDPKYERLVNAILDFLPKIEE-----NLICSKYTD 566
Query: 380 MEEL---NEVREIYY 391
+ + E I+
Sbjct: 567 LLRIALMAEDEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 48.5 bits (115), Expect = 3e-06
Identities = 64/369 (17%), Positives = 111/369 (30%), Gaps = 105/369 (28%)
Query: 3 VYMREASQRFSD-----GELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYS--TFQSH 55
Y E + G+L+ + + R L + +G N+ S+
Sbjct: 168 DYFEELRDLYQTYHVLVGDLIKFSAE--TLSELIRTTLDAEKVFTQG-LNILEWLENPSN 224
Query: 56 EPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNMEEL-------- 107
P+ DYL S+ I + + L AH++++ F P +
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQL-----AHYVVTAKLLGFT-----PGELRSYLKGATGHS 274
Query: 108 NEVITAA---------EFHPIDCN----LF-VYSSSKGTIRLCDMRAAALCDRHSKCLIE 153
++TA F LF + + + L D S E
Sbjct: 275 QGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED--SLENNE 332
Query: 154 GTNC---NCQGLIVPESKREERQSSQNRREKED--------NRRK-------PA------ 189
G + L + + ++ + N N K P
Sbjct: 333 GVPSPMLSISNL--TQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLN 390
Query: 190 IRLCDMRAAALCDRHSKFFEE--PE-----DPTNKSFFSEIISSISDVKISNSGRYMISR 242
+ L +A + D+ F E + P F S ++ SD +I++
Sbjct: 391 LTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASD---------LINK 441
Query: 243 DYLCVKV-W---DLHMESRPVETYPTHTKEENGQ-LRDPS-NITALRVPQI--KPI--EL 292
D + V + D+ + PV Y T G LR S +I+ V I P+ E
Sbjct: 442 DLVKNNVSFNAKDIQI---PV--YDTFD----GSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 293 TVEASPRRI 301
T + I
Sbjct: 493 TTQFKATHI 501
Score = 35.8 bits (82), Expect = 0.031
Identities = 60/319 (18%), Positives = 96/319 (30%), Gaps = 109/319 (34%)
Query: 53 Q-SHEP----EFDYLKSLEIEEKINKIRWLRRKNQA--HFLLSTNDQSFNIVDIKPTNME 105
Q S E + Y S + + W N+A HF + F+I+DI N
Sbjct: 1624 QGSQEQGMGMDL-YKTS----KAAQDV-W----NRADNHFK---DTYGFSILDIVINNPV 1670
Query: 106 ELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKC--LIEGTNCNCQGLI 163
L + I N YS+ M + D K + + N +
Sbjct: 1671 NLTIHFGGEKGKRIREN---YSA---------MIFETIVDGKLKTEKIFKEINEHSTSYT 1718
Query: 164 V--PESKREERQSSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSF-- 219
+ Q +Q PA+ L M AA D SK P + +F
Sbjct: 1719 FRSEKGLLSATQFTQ-----------PALTL--MEKAAFEDLKSKGLI----PADATFAG 1761
Query: 220 -----------FSEIISSISD-VKISNS-GRYM---ISRDYLCVKVWDLHMESRP----- 258
++++ SI V++ G M + RD L + + + P
Sbjct: 1762 HSLGEYAALASLADVM-SIESLVEVVFYRGMTMQVAVPRDELGRSNYGM-IAINPGRVAA 1819
Query: 259 ----------VETYPTHTKE---------ENGQ---------LRDPSNI-TALRVPQIKP 289
VE T EN Q L +N+ +++ +I
Sbjct: 1820 SFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDI 1879
Query: 290 IELTVEASPRRIFANAHTY 308
IEL S + H +
Sbjct: 1880 IELQKSLSLEEV--EGHLF 1896
Score = 35.0 bits (80), Expect = 0.054
Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 44/130 (33%)
Query: 272 QLRD--------PSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSDQLTVE 323
QL++ P+ A P EL + F +++S VE
Sbjct: 32 QLQEQFNKILPEPTEGFAADDEPTTPAELVGK------FLG----YVSS--------LVE 73
Query: 324 ASPRGIFADAHTYHISSTSVNSDQETYLSADDLRINLWHLEITDQSF--NIVDIKPTNME 381
S G F + + + + YL +D+ H + ++ T +
Sbjct: 74 PSKVGQFDQ-----VLNLCLTEFENCYLEGNDI-----H------ALAAKLLQENDTTLV 117
Query: 382 ELNEVREIYY 391
+ E+ + Y
Sbjct: 118 KTKELIKNYI 127
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor,
phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila
melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A*
3gfc_A 3cfs_B 3cfv_B
Length = 430
Score = 34.3 bits (79), Expect = 0.061
Identities = 53/365 (14%), Positives = 98/365 (26%), Gaps = 97/365 (26%)
Query: 33 DPLSKTSIPKRGEYN----VYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKNQAHFLLS 88
L + +Y+ + T S E + S+++ + + N+
Sbjct: 52 QWLPDVTKQDGKDYSVHRLILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGG 111
Query: 89 TNDQSFNIVDIKPTNMEELNEVITAAEFHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHS 148
I N E + A + P + + + + + D +H
Sbjct: 112 FGSVCGKIEIEIKINHEG---EVNRARYMPQNACVIATKTPSSDVLVFDY------TKHP 162
Query: 149 KCLIEGTNCNCQGLIVPESKREERQSSQNRREK-------EDNRRKPAIRLCDMRAAALC 201
C L + ++E S N +D+ I L D+ A
Sbjct: 163 SKPEPSGECQPD-LRLRGHQKEGYGLSWNPNLNGYLLSASDDHT----ICLWDINATP-- 215
Query: 202 DRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMI---SRDYLCVKVWDLHMESRP 258
+E K+ F+ + + DV + + D + +WD
Sbjct: 216 -------KEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ-KLMIWDT------ 261
Query: 259 VETYPTHTKEENGQLRDPSNITALRVPQIKPIELTVEASPRRIFANAHTYHINSISVNSD 318
R TV+A HT +N +S N
Sbjct: 262 ------------------------RNNNTSKPSHTVDA---------HTAEVNCLSFNPY 288
Query: 319 QLTVEAS-----------------PRGIFADAHTYHISSTSVNSDQETYL--SADDLRIN 359
+ A+ F ++H I + ET L S D R++
Sbjct: 289 SEFILATGSADKTVALWDLRNLKLKLHSF-ESHKDEIFQVQWSPHNETILASSGTDRRLH 347
Query: 360 LWHLE 364
+W L
Sbjct: 348 VWDLS 352
Score = 34.3 bits (79), Expect = 0.068
Identities = 21/145 (14%), Positives = 43/145 (29%), Gaps = 27/145 (18%)
Query: 11 RFS--DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIE 68
R+ + ++AT V++F P + H+ E
Sbjct: 135 RYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-RLRGHQKE---------- 183
Query: 69 EKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNMEEL-----------NEVITAAEFH 117
+ W + L +++D + + DI T E V+ +H
Sbjct: 184 --GYGLSWNPNL-NGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWH 240
Query: 118 PIDCNLFVYSSSKGTIRLCDMRAAA 142
+ +LF + + + D R
Sbjct: 241 LLHESLFGSVADDQKLMIWDTRNNN 265
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 31.7 bits (72), Expect = 0.40
Identities = 11/91 (12%), Positives = 32/91 (35%), Gaps = 4/91 (4%)
Query: 46 YNVYSTFQSHEPE-FDYLKSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNM 104
++ + + +L + +I + + + + + ++ T M
Sbjct: 3 HHHHHHGEGDVESIEKFLSTFKILPPLRDYKEFGPIQEIVRSPNMGNLRGKLIA---TLM 59
Query: 105 EELNEVITAAEFHPIDCNLFVYSSSKGTIRL 135
E IT++ P + + S +G I++
Sbjct: 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKI 90
Score = 30.9 bits (70), Expect = 0.79
Identities = 21/137 (15%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 12 FS-DGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEK 70
+ + A K G++++ + + + S K LK+ E
Sbjct: 119 MIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKIN--------LKNFGKNEY 170
Query: 71 INKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNMEELNE--------VITAAEFHPIDCN 122
++R + ++ + TN I DI+ +E L +++ +C
Sbjct: 171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIR--TLERLQIIENSPRHGAVSSICIDE-ECC 227
Query: 123 LFVYSSSKGTIRLCDMR 139
+ + +++G I + D+R
Sbjct: 228 VLILGTTRGIIDIWDIR 244
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase,
spliceosome, DNA damage, D repair, mRNA processing,
nucleus; 2.60A {Saccharomyces cerevisiae}
Length = 343
Score = 31.6 bits (71), Expect = 0.44
Identities = 34/280 (12%), Positives = 70/280 (25%), Gaps = 65/280 (23%)
Query: 4 YMREASQRFSDGELLATGDKGGRVVIFQ-RDPLSKTSIPKRGEYNVYSTFQSHEPEFDYL 62
Y + D + + G + Q +D + T+I
Sbjct: 37 YKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTI---------------------- 74
Query: 63 KSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNM-----EELNEVITAAEFH 117
+ + R LL I+D K + + I H
Sbjct: 75 TTPNPRTGGEHPAIISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGH 134
Query: 118 P-IDCNLFVYSSSKGTIRLCDMRAAA---LCDRHSKCLIEGTNCNCQGLIVPESKREERQ 173
++ F+++ ++GTI + + S + L++
Sbjct: 135 NEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLL--------- 185
Query: 174 SSQNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFS-EIISSISDVKI 232
A D + S F + + I +VK
Sbjct: 186 -----------------------ALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKF 222
Query: 233 SNSGRYMISRDYLCVKVWDLHMESRPVETYPTHTKEENGQ 272
+++G +M+ V +DL + + E
Sbjct: 223 ADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTG 262
>2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr
unknown function; HET: EHM; 1.70A {Xanthomonas
campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A
Length = 441
Score = 31.4 bits (71), Expect = 0.52
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 186 RKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISR 242
PAI L + + EEP P + + I I+ V +S +G + +R
Sbjct: 255 VGPAIDWMR----QLAEFDIAWIEEPTSPDDVLGHAAIRQGITPVPVS-TGEHTQNR 306
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.4 bits (65), Expect = 1.8
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 165 PESKREERQSSQNR-REKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPE 212
PES R+ R+ + R +E + + + L + + + E+ E
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller;
3.30A {Saccharomyces cerevisiae}
Length = 416
Score = 28.5 bits (64), Expect = 4.7
Identities = 4/25 (16%), Positives = 10/25 (40%)
Query: 111 ITAAEFHPIDCNLFVYSSSKGTIRL 135
+ +F+ N+ + G I +
Sbjct: 116 VKTVKFNAKQDNVLASGGNNGEIFI 140
>1jb0_D Photosystem 1 reaction centre subunit II; membrane protein,
multiprotein-pigment complex, photosynthes; HET: CL1 PQN
BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP:
d.187.1.1 PDB: 3pcq_D*
Length = 138
Score = 27.3 bits (60), Expect = 5.0
Identities = 11/41 (26%), Positives = 15/41 (36%)
Query: 41 PKRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLRRKN 81
K +Y +Y F E + K EK+NK R
Sbjct: 75 RKINDYKIYRIFPDGETVLIHPKDGVFPEKVNKGREAVNSV 115
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF,
cofilin, structural genomics, PSI, protein structure
initiative; 1.70A {Caenorhabditis elegans} SCOP:
b.69.4.1 b.69.4.1 PDB: 1pev_A
Length = 611
Score = 28.3 bits (64), Expect = 5.6
Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 213 DPTNKSFFSEIISSISDVKISNSGRYMISRDYLC-VKVWDLHMESRPV-ETYPTHT 266
T+ ++E + K S SG Y S D V++WD + + T P +
Sbjct: 48 SLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS 103
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision
repair, xeroderma pigmentosum, cytoplasm, DNA repair;
HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B*
4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Length = 383
Score = 28.1 bits (63), Expect = 6.0
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 111 ITAAEFHPIDCNLFVYSSSKGTIRLCD 137
+T+ E+HP S G I L D
Sbjct: 76 VTSLEWHPTHPTTVAVGSKGGDIILWD 102
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40
repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Length = 425
Score = 28.0 bits (63), Expect = 6.0
Identities = 12/68 (17%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 201 CDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVE 260
+H + E N S S DV+ + +++I + V+ + E P
Sbjct: 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQIT-EKTPTG 241
Query: 261 TYPTHTKE 268
H
Sbjct: 242 KLIGHHGP 249
>3mkc_A Racemase; metabolic process, PSI2, NYSGXRC, structu genomics,
protein structure initiative, NEW YORK SGX resear for
structural genomics; 1.77A {Pseudovibrio SP} PDB: 3nzg_A
Length = 394
Score = 27.6 bits (62), Expect = 6.8
Identities = 11/77 (14%), Positives = 19/77 (24%), Gaps = 12/77 (15%)
Query: 299 RRIFANAHTYHINSISVNSDQLTVEASPRGIFADAHTYHISSTSVNSD-QETYLSADDLR 357
RRI A ++ + N + A H N+ E +
Sbjct: 298 RRITEMATANNVQVMPHN---------WKTGITSAAAIHYQFAVGNAPYFEYV--HPEFC 346
Query: 358 INLWHLEITDQSFNIVD 374
+ +VD
Sbjct: 347 DGELRKYLVTPEAELVD 363
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer,
seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora
crassa} SCOP: b.69.10.1
Length = 365
Score = 27.6 bits (61), Expect = 7.2
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 6/36 (16%)
Query: 13 SDGE-LLATGDKGGRVVIFQRDP-----LSKTSIPK 42
E + T D+ G + I++ +++ IP+
Sbjct: 319 WSDEWMAITDDQEGWLEIYRWKDEFLHRVARVRIPE 354
>3kv0_A HET-C2; GLTP, glycolipid transfer protein, transport protein; HET:
MLY; 1.90A {Podospora anserina}
Length = 209
Score = 27.4 bits (60), Expect = 8.0
Identities = 8/38 (21%), Positives = 10/38 (26%)
Query: 209 EEPEDPTNKSFFSEIISSISDVKISNSGRYMISRDYLC 246
+ P +F S DV I IS
Sbjct: 6 AVVQIPAGATFLETFXXSFVDVPIDAEXGNAISTAEFL 43
>3ejx_A DAP epimerase, diaminopimelate epimerase, chloroplastic;
PLP-independenet amino acid racemase,
aziridino-diaminopimelate, isomerase; HET: ZDP; 1.95A
{Arabidopsis thaliana} PDB: 3ekm_A*
Length = 317
Score = 27.2 bits (61), Expect = 9.3
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 183 DNRRKPAIRLCDMRAAALCDRH 204
DNR ++ +AA LCDR+
Sbjct: 43 DNRDSSEPKITQEQAAKLCDRN 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.385
Gapped
Lambda K H
0.267 0.0557 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,926,405
Number of extensions: 343860
Number of successful extensions: 989
Number of sequences better than 10.0: 1
Number of HSP's gapped: 978
Number of HSP's successfully gapped: 42
Length of query: 400
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 304
Effective length of database: 4,021,377
Effective search space: 1222498608
Effective search space used: 1222498608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)