RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy12356
         (400 letters)



>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 337

 Score = 30.5 bits (67), Expect = 0.34
 Identities = 12/51 (23%), Positives = 19/51 (37%)

Query: 225 SSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHTKEENGQLRD 275
             +  V ISN  R++ +    CVKVWD+                 +  +R 
Sbjct: 52  EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRS 102


>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 388

 Score = 30.5 bits (67), Expect = 0.36
 Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 16/155 (10%)

Query: 116 FHPIDCNLFVYSSSKGTIRLCDMRAAALCDRHSKCLIEGTNCNCQGLIVPESKREERQSS 175
             P D       S    +R+ D     L +R       GT        V  ++  +   S
Sbjct: 212 VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 176 QNRREKEDNRRKPAIRLCDMRAAALCDRHSKFFEEPEDPTNKSFFSEIISSISDVKISNS 235
            +     D      ++L +++ A     +    + P   T +  +      +  V  + +
Sbjct: 272 GSL----DRS----VKLWNLQNA----NNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQN 319

Query: 236 GRYMI--SRDYLCVKVWDLHMESRPVETYPTHTKE 268
             Y++  S+D   V  WD      P+     H   
Sbjct: 320 DEYILSGSKDR-GVLFWDKK-SGNPLLMLQGHRNS 352



 Score = 26.7 bits (57), Expect = 6.5
 Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 5/74 (6%)

Query: 225 SSISDVKISNSGRYMISRDYLCVKVWDLHMESRPVETYPTHTKEENGQLRDPSNITALRV 284
           S +  VK SN G Y+ +      +V+ +  +   V      +       +DP N+     
Sbjct: 63  SVVCCVKFSNDGEYLATGCNKTTQVYRVS-DGSLVARLSDDSAAN----KDPENLNTSSS 117

Query: 285 PQIKPIELTVEASP 298
           P       +V  SP
Sbjct: 118 PSSDLYIRSVCFSP 131



 Score = 25.9 bits (55), Expect = 9.4
 Identities = 18/139 (12%), Positives = 38/139 (27%), Gaps = 28/139 (20%)

Query: 13  SDGELLATGDKGGRVVIFQRDPLSKTSIPKRGEYNVYSTFQSHEPEFDYLKSLEIEEKIN 72
            DG+ + +G     V ++     +  S  K                         ++ + 
Sbjct: 264 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIG-----------HKDFVL 312

Query: 73  KIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNMEELNE------------VITAAEFHPID 120
            +     +N  + L  + D+     D K  +   L              V   +   P +
Sbjct: 313 SVATT--QNDEYILSGSKDRGVLFWDKK--SGNPLLMLQGHRNSVISVAVANGSSLGP-E 367

Query: 121 CNLFVYSSSKGTIRLCDMR 139
            N+F   S     R+   +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386


>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 179

 Score = 28.5 bits (64), Expect = 1.1
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 7/45 (15%)

Query: 322 VEASPRGIFADAHTYHISSTSVNSDQETYLSADDLRINLWHLEIT 366
           VE +P+G+ A    YH  S   + D++ +LS +      W+L I 
Sbjct: 138 VEEAPKGMLARGT-YHNKSFFTDDDKQDHLSWE------WNLSIK 175


>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 138

 Score = 28.1 bits (63), Expect = 1.1
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 7/45 (15%)

Query: 322 VEASPRGIFADAHTYHISSTSVNSDQETYLSADDLRINLWHLEIT 366
           VE +P+G+ A    Y I S   + D+  +LS +      W+L I 
Sbjct: 98  VEEAPKGMLARGS-YSIKSRFTDDDKTDHLSWE------WNLTIK 135


>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode
           (Caenorhabditis elegans) [TaxId: 6239]}
          Length = 311

 Score = 26.8 bits (57), Expect = 4.7
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 5/79 (6%)

Query: 86  LLSTNDQSFNIVDIK-PTNMEELNE---VITAAEFHPIDCNLFVYSSSKGTIRLCDMRAA 141
           +   N  S   V +   T+ E   E     T A+  P            G +R+ D    
Sbjct: 32  IQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSP-SGYYCASGDVHGNVRIWDTTQT 90

Query: 142 ALCDRHSKCLIEGTNCNCQ 160
               + +  +  G   +  
Sbjct: 91  THILKTTIPVFSGPVKDIS 109


>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 393

 Score = 26.7 bits (57), Expect = 5.7
 Identities = 17/137 (12%), Positives = 34/137 (24%), Gaps = 12/137 (8%)

Query: 9   SQRFSDGELLATGDKGGRVVIFQRDPLSKTSIP------KRGEYNVYSTFQSHEPEFDYL 62
           S   S+  L+ATG   G V I +   L                 ++ S   S +     +
Sbjct: 189 SVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI 248

Query: 63  KSLEIEEKINKIRWLRRKNQAHFLLSTNDQSFNIVDIKPTNMEELNEVITAAEFHPIDCN 122
                    N    +            +                 +  + +  F+     
Sbjct: 249 AHDS-----NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND-SGE 302

Query: 123 LFVYSSSKGTIRLCDMR 139
               +   G +R  D++
Sbjct: 303 TLCSAGWDGKLRFWDVK 319


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0556    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,452,288
Number of extensions: 67441
Number of successful extensions: 200
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 15
Length of query: 400
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 313
Effective length of database: 1,213,086
Effective search space: 379695918
Effective search space used: 379695918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.0 bits)