Query psy12362
Match_columns 92
No_of_seqs 41 out of 43
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 17:08:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12362.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/12362hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4doh_A Interleukin-20; IL10 fa 51.2 58 0.002 22.6 7.1 52 32-83 79-134 (153)
2 3c3f_A Alpha/beta peptide with 47.6 24 0.00083 19.5 3.3 27 65-91 7-33 (34)
3 2r2v_A GCN4 leucine zipper; co 44.9 24 0.00082 19.5 3.0 26 65-90 7-32 (34)
4 1x5b_A Signal transducing adap 44.3 58 0.002 22.3 5.7 44 34-77 71-125 (163)
5 2wuj_A Septum site-determining 43.4 29 0.00098 20.3 3.4 32 58-89 19-50 (57)
6 1uo4_A General control protein 41.2 39 0.0013 18.7 3.5 27 65-91 7-33 (34)
7 2ksc_A Cyanoglobin; hemeprotei 41.1 42 0.0014 21.4 4.3 44 31-75 9-53 (123)
8 2a2f_X Exocyst complex compone 40.8 44 0.0015 25.7 5.0 27 21-49 68-94 (325)
9 3m48_A General control protein 37.0 50 0.0017 18.1 3.5 26 66-91 7-32 (33)
10 2i7u_A Four-alpha-helix bundle 35.2 40 0.0014 20.5 3.2 22 64-85 4-25 (62)
11 3c3g_A Alpha/beta peptide with 35.0 50 0.0017 18.1 3.3 27 65-91 6-32 (33)
12 1juq_A ADP-ribosylation factor 34.7 1.1E+02 0.0036 21.2 5.8 44 34-77 69-128 (171)
13 3azd_A Short alpha-tropomyosin 34.2 34 0.0011 18.7 2.5 27 65-91 10-36 (37)
14 2bni_A General control protein 30.7 64 0.0022 17.8 3.3 27 65-91 7-33 (34)
15 3ldz_A STAM-1, signal transduc 29.8 1.2E+02 0.0042 20.0 5.5 44 34-77 61-114 (140)
16 2wq1_A General control protein 28.1 79 0.0027 17.3 3.4 26 65-90 6-31 (33)
17 1s69_A Cyanoglobin, hemoglobin 27.8 83 0.0028 19.7 4.0 42 32-75 11-54 (124)
18 3p6a_A RHO guanine nucleotide 27.7 1.6E+02 0.0056 21.4 6.1 44 40-83 105-155 (377)
19 1elk_A Target of MYB1; superhe 27.6 1.2E+02 0.0041 20.5 5.0 44 34-77 73-130 (157)
20 2qrw_A Hemoglobin-like protein 27.2 1.1E+02 0.0037 19.4 4.5 43 31-75 11-55 (128)
21 2oxj_A Hybrid alpha/beta pepti 26.2 89 0.003 17.2 3.4 27 65-91 7-33 (34)
22 1n1f_A Interleukin-19; cytokin 25.2 1.4E+02 0.0046 20.9 5.0 26 58-83 109-134 (159)
23 1zkl_A HCP1, TM22, high-affini 24.4 2.1E+02 0.0073 22.0 6.4 53 35-87 280-334 (353)
24 3clj_A Protein NRD1; CTD-inter 23.5 1.9E+02 0.0065 20.1 5.8 45 32-76 66-128 (157)
25 1kd8_B GABH BLL, GCN4 acid bas 23.3 69 0.0024 17.8 2.5 25 65-89 7-31 (36)
26 1tu9_A Hypothetical protein PA 23.2 55 0.0019 20.7 2.5 18 60-77 45-62 (134)
27 1jk0_A RNR Y2, ribonucleoside- 22.7 2.9E+02 0.0098 21.9 7.9 61 28-89 178-241 (419)
28 3w03_C DNA repair protein XRCC 22.1 1.7E+02 0.0058 21.1 5.1 45 35-90 139-183 (184)
29 2bkm_A Truncated hemoglobin fr 21.8 69 0.0024 20.4 2.7 41 32-74 13-54 (128)
30 2xyk_A 2-ON-2 hemoglobin; oxyg 21.6 1.7E+02 0.0059 18.9 5.3 44 32-75 15-60 (133)
31 1kd8_A GABH AIV, GCN4 acid bas 21.5 80 0.0027 17.6 2.5 25 65-89 7-31 (36)
32 1ux8_A YJBI protein; oxygen st 21.3 66 0.0023 20.7 2.6 41 32-75 15-56 (132)
33 1a6m_A Myoglobin; heme protein 21.1 1.4E+02 0.0049 19.3 4.3 27 32-58 124-150 (151)
34 1dlw_A Hemoglobin; oxygen stor 21.0 1.3E+02 0.0044 18.6 3.9 12 34-45 11-22 (116)
No 1
>4doh_A Interleukin-20; IL10 family cytokine receptor complex, alpha helical cytokin beta sandwhich receptor fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Probab=51.25 E-value=58 Score=22.56 Aligned_cols=52 Identities=15% Similarity=0.157 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHHhhHhHHHHHHHH----hchhhHHHHHHHHHHHHHHHhhHHHH
Q psy12362 32 TAQGREAVESFLNHCVRPFAGLIQMC----GHNRARQRDRLSHLLEEFAALQDEKS 83 (92)
Q Consensus 32 d~q~~~~~d~F~~~~~~pf~~l~~~~----g~NRaRQRdkL~h~lee~~~LQ~EAe 83 (92)
+|+.+..++++-+.+..---++-+.. |++..+-.+++......|..|+.++.
T Consensus 79 ~~~~~~~vsslan~f~~L~~~L~~C~~~~~C~~~~~~~~~~~~ik~~f~kL~~~~g 134 (153)
T 4doh_A 79 DHYTLRKISSLANSFLTIKKDLRLCHAHMTCHCGEEAMKKYSQILSHFEKLEPQAA 134 (153)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHSCHHHH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHhCccccCCCCcHHHHHHHHHHHHHHHhhchhHH
Confidence 56667766666655555555555543 77888878888888999998887643
No 2
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=47.63 E-value=24 Score=19.53 Aligned_cols=27 Identities=19% Similarity=0.295 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhccC
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGNSE 91 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l~~ 91 (92)
-||...+|.+-.+|++|-+++-..|.+
T Consensus 7 EdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 7 EXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 478999999999999999998876643
No 3
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=44.93 E-value=24 Score=19.54 Aligned_cols=26 Identities=12% Similarity=0.153 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhcc
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGNS 90 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l~ 90 (92)
=||+..++.+-.+|++|-.++-.-|-
T Consensus 7 edKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 7 ADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 48999999999999999999876653
No 4
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=44.33 E-value=58 Score=22.31 Aligned_cols=44 Identities=14% Similarity=0.299 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhhHhHH----------HHHHHHhc-hhhHHHHHHHHHHHHHHH
Q psy12362 34 QGREAVESFLNHCVRPFA----------GLIQMCGH-NRARQRDRLSHLLEEFAA 77 (92)
Q Consensus 34 q~~~~~d~F~~~~~~pf~----------~l~~~~g~-NRaRQRdkL~h~lee~~~ 77 (92)
++-.++|..+++|..+|- .+++.+.- .....|+|+-.+|..|+.
T Consensus 71 ~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~ 125 (163)
T 1x5b_A 71 QALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE 125 (163)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence 566788888888877766 23344432 335899999999999985
No 5
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=43.41 E-value=29 Score=20.30 Aligned_cols=32 Identities=13% Similarity=0.302 Sum_probs=14.5
Q ss_pred hchhhHHHHHHHHHHHHHHHhhHHHHhHhhhc
Q psy12362 58 GHNRARQRDRLSHLLEEFAALQDEKSKIRAGN 89 (92)
Q Consensus 58 g~NRaRQRdkL~h~lee~~~LQ~EAe~vD~~l 89 (92)
|.|..-.-+=|..+.+++..|..|-+++...+
T Consensus 19 GY~~~EVD~FLd~v~~~~~~l~~e~~~L~~~~ 50 (57)
T 2wuj_A 19 GYDEDEVNEFLAQVRKDYEIVLRKKTELEAKV 50 (57)
T ss_dssp EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444544444444433
No 6
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=41.23 E-value=39 Score=18.68 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhccC
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGNSE 91 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l~~ 91 (92)
-||...+|.+-.+|++|-.++-..|.+
T Consensus 7 EdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 7 EDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 478899999999999999999887764
No 7
>2ksc_A Cyanoglobin; hemeprotein, 2/2 hemoglobin, GLBN, TRHBN, unknown function; HET: HEB; NMR {Synechococcus SP}
Probab=41.10 E-value=42 Score=21.35 Aligned_cols=44 Identities=16% Similarity=0.121 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHHHHhhH-hHHHHHHHHhchhhHHHHHHHHHHHHH
Q psy12362 31 FTAQGREAVESFLNHCVR-PFAGLIQMCGHNRARQRDRLSHLLEEF 75 (92)
Q Consensus 31 ~d~q~~~~~d~F~~~~~~-pf~~l~~~~g~NRaRQRdkL~h~lee~ 75 (92)
..+.++..+|.|..++.. |-+.-+-. +.+..++++|+..-+..+
T Consensus 9 g~~~i~~lv~~FY~~v~~Dp~l~~~F~-~~d~~~~~~~l~~Fl~~~ 53 (123)
T 2ksc_A 9 GAAAVDLAVEKFYGKVLADERVNRFFV-NTDMAKQKQHQKDFMTYA 53 (123)
T ss_dssp CSHHHHHHHHHHHHHHHHCHHHHTGGG-SSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCHHHHHhcC-CCCHHHHHHHHHHHHHHH
Confidence 467889999999988774 43222211 357888888888777654
No 8
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=40.85 E-value=44 Score=25.69 Aligned_cols=27 Identities=15% Similarity=0.297 Sum_probs=21.5
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHHHHhhHh
Q psy12362 21 SLYWPSPRAGFTAQGREAVESFLNHCVRP 49 (92)
Q Consensus 21 ~~vlp~s~l~~d~q~~~~~d~F~~~~~~p 49 (92)
|.++|.|..+ |.+...+.+|++.|+.=
T Consensus 68 P~~lPFS~~v--P~~c~~ir~fi~~~~~F 94 (325)
T 2a2f_X 68 PKKFPFSRMV--PEVYHQAKEFMYACMKF 94 (325)
T ss_dssp CCCSSSBTHH--HHHHHHHHHHHHHHHHH
T ss_pred CcccCccHHH--HHHHHHHHHHHHHHHHH
Confidence 7889999987 88888888887777643
No 9
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=36.96 E-value=50 Score=18.10 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHhhHHHHhHhhhccC
Q psy12362 66 DRLSHLLEEFAALQDEKSKIRAGNSE 91 (92)
Q Consensus 66 dkL~h~lee~~~LQ~EAe~vD~~l~~ 91 (92)
+|...+|.+=..|++|-+++-..|.+
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 68889999999999999999877654
No 10
>2i7u_A Four-alpha-helix bundle; HOMO dimer, anesthetic binding, de novo protein/ligand binding protein complex; NMR {Synthetic} PDB: 2jst_A
Probab=35.23 E-value=40 Score=20.49 Aligned_cols=22 Identities=32% Similarity=0.599 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhHHHHhH
Q psy12362 64 QRDRLSHLLEEFAALQDEKSKI 85 (92)
Q Consensus 64 QRdkL~h~lee~~~LQ~EAe~v 85 (92)
.|+.-+.+.|||..|-.||.++
T Consensus 4 lreeaaklfeewkklaeeaakl 25 (62)
T 2i7u_A 4 LREEAAKLFEEWKKLAEEAAKL 25 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4777889999999999999876
No 11
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=35.02 E-value=50 Score=18.10 Aligned_cols=27 Identities=11% Similarity=0.228 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhccC
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGNSE 91 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l~~ 91 (92)
-||...+|.+=.+|++|-+++-.-|.+
T Consensus 6 EdKvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 6 EXKLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 478899999999999999998876653
No 12
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=34.74 E-value=1.1e+02 Score=21.17 Aligned_cols=44 Identities=20% Similarity=0.441 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhHhHHH----------HHHHHh-----ch-hhHHHHHHHHHHHHHHH
Q psy12362 34 QGREAVESFLNHCVRPFAG----------LIQMCG-----HN-RARQRDRLSHLLEEFAA 77 (92)
Q Consensus 34 q~~~~~d~F~~~~~~pf~~----------l~~~~g-----~N-RaRQRdkL~h~lee~~~ 77 (92)
++-.++|..+++|..+|-. ++.... -+ -...|+|+-.+|.+|+.
T Consensus 69 ~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 69 QALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 5667889999999888773 444442 11 26899999999999984
No 13
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=34.22 E-value=34 Score=18.67 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhccC
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGNSE 91 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l~~ 91 (92)
..|+-.+-.+.+++|++|+.+...|-|
T Consensus 10 KkKiq~lq~q~d~aee~~~~~~~~l~~ 36 (37)
T 3azd_A 10 RRKIRSLQEQNYHLENEVARLKKLVGE 36 (37)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 568888889999999999999887643
No 14
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=30.74 E-value=64 Score=17.78 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhccC
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGNSE 91 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l~~ 91 (92)
-||+..+|.+=.+|++|-+++-..|.+
T Consensus 7 EdKvEeLl~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 7 EDKLEEILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhcc
Confidence 478999999999999999998776643
No 15
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=29.83 E-value=1.2e+02 Score=20.02 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHhhHhHHHH----------HHHHhchhhHHHHHHHHHHHHHHH
Q psy12362 34 QGREAVESFLNHCVRPFAGL----------IQMCGHNRARQRDRLSHLLEEFAA 77 (92)
Q Consensus 34 q~~~~~d~F~~~~~~pf~~l----------~~~~g~NRaRQRdkL~h~lee~~~ 77 (92)
++-.++|..+++|..+|-.. +...--.-...|+|+-.+|..|+.
T Consensus 61 ~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~ 114 (140)
T 3ldz_A 61 QALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD 114 (140)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 45567888888887776632 222212235899999999999985
No 16
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=28.06 E-value=79 Score=17.29 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhcc
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGNS 90 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l~ 90 (92)
-||...+|.+-.+|++|-+++-..+-
T Consensus 6 EdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 6 EDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 37889999999999999999876554
No 17
>1s69_A Cyanoglobin, hemoglobin, HB; on 2 helical fold, heme, iron, cyanoba oxygen binding, hexacoordinate, truncated, oxygen storage-T complex; HET: FLC HEM; 1.68A {Synechocystis SP} SCOP: a.1.1.1 PDB: 1s6a_A* 1mwb_A* 1rtx_A* 2hz1_A* 2hz3_A* 2hz2_A*
Probab=27.82 E-value=83 Score=19.74 Aligned_cols=42 Identities=19% Similarity=0.181 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHHhhH-hHHHHHHHHh-chhhHHHHHHHHHHHHH
Q psy12362 32 TAQGREAVESFLNHCVR-PFAGLIQMCG-HNRARQRDRLSHLLEEF 75 (92)
Q Consensus 32 d~q~~~~~d~F~~~~~~-pf~~l~~~~g-~NRaRQRdkL~h~lee~ 75 (92)
.+.+...++.|..++.. |-+ -..|. .|..+|+++|...+..+
T Consensus 11 ~~~i~~lv~~FY~~v~~dp~l--~~~F~~~d~~~~~~~l~~fl~~~ 54 (124)
T 1s69_A 11 TTAVDLAVDKFYERVLQDDRI--KHFFADVDMAKQRAHQKAFLTYA 54 (124)
T ss_dssp HHHHHHHHHHHHHHHHTCTTT--GGGGTTCCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcChHH--HHHhCCCCHHHHHHHHHHHHHHH
Confidence 34556666666666552 211 11122 35666666666665543
No 18
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=27.74 E-value=1.6e+02 Score=21.44 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=29.3
Q ss_pred HHHHHHhhH----hHHHHHHHHhchhhHHHHHHHHHHHH---HHHhhHHHH
Q psy12362 40 ESFLNHCVR----PFAGLIQMCGHNRARQRDRLSHLLEE---FAALQDEKS 83 (92)
Q Consensus 40 d~F~~~~~~----pf~~l~~~~g~NRaRQRdkL~h~lee---~~~LQ~EAe 83 (92)
|-|++++-+ .|..+|..||.|..+....|...... |.....+.+
T Consensus 105 ~~fl~~~~~~~~~~~~~~Y~~Y~~n~~~a~~~l~~~~~~~~~f~~~l~~~~ 155 (377)
T 3p6a_A 105 DVLLARFDGAEGSWFQKISSRFCSRQSFALEQLKAKQRKDPRFCAFVQEAE 155 (377)
T ss_dssp HHHHHHHSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHhcchhhHHHHHHHHHHHHhHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 345555544 36789999999999988888765543 555444444
No 19
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=27.55 E-value=1.2e+02 Score=20.47 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhhHhHHH-----------HHHHHhc--h-hhHHHHHHHHHHHHHHH
Q psy12362 34 QGREAVESFLNHCVRPFAG-----------LIQMCGH--N-RARQRDRLSHLLEEFAA 77 (92)
Q Consensus 34 q~~~~~d~F~~~~~~pf~~-----------l~~~~g~--N-RaRQRdkL~h~lee~~~ 77 (92)
++-.++|..+++|..+|-. +++...- + -...|+|+-.+|..|+.
T Consensus 73 ~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W~~ 130 (157)
T 1elk_A 73 LALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSWAD 130 (157)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHH
Confidence 5667888888888655543 3555531 2 24889999999999986
No 20
>2qrw_A Hemoglobin-like protein HBO; truncated hemoglobin fold, alpha helix, heme, hydroxylation, iron, membrane, metal-binding; HET: HEM; 1.93A {Mycobacterium tuberculosis} PDB: 1ngk_A*
Probab=27.24 E-value=1.1e+02 Score=19.41 Aligned_cols=43 Identities=19% Similarity=0.242 Sum_probs=28.3
Q ss_pred CCHHHHHHHHHHHHHhhH-hHHHHHHHHh-chhhHHHHHHHHHHHHH
Q psy12362 31 FTAQGREAVESFLNHCVR-PFAGLIQMCG-HNRARQRDRLSHLLEEF 75 (92)
Q Consensus 31 ~d~q~~~~~d~F~~~~~~-pf~~l~~~~g-~NRaRQRdkL~h~lee~ 75 (92)
..+.+++.+|.|..++.. |- +-..|. .+..++++|+..-+..+
T Consensus 11 G~~~i~~lv~~FY~~v~~dp~--l~~~F~~~d~~~~~~~l~~fl~~~ 55 (128)
T 2qrw_A 11 GAKTFDAIVSRFYAQVAEDEV--LRRVYPEDDLAGAEERLRMFLEQY 55 (128)
T ss_dssp THHHHHHHHHHHHHHHHHCHH--HHHHSCCSCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCHH--HHHhccCCCHHHHHHHHHHHHHHH
Confidence 456788889999888763 21 333343 56777787777766544
No 21
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=26.16 E-value=89 Score=17.20 Aligned_cols=27 Identities=19% Similarity=0.316 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhccC
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGNSE 91 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l~~ 91 (92)
-||...+|.+=..|++|-+++-+.|.+
T Consensus 7 E~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 7 EXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 378888999999999999998877654
No 22
>1n1f_A Interleukin-19; cytokine, four helix bundle, immune system; HET: NAG; 1.95A {Homo sapiens} SCOP: a.26.1.3
Probab=25.19 E-value=1.4e+02 Score=20.88 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=20.8
Q ss_pred hchhhHHHHHHHHHHHHHHHhhHHHH
Q psy12362 58 GHNRARQRDRLSHLLEEFAALQDEKS 83 (92)
Q Consensus 58 g~NRaRQRdkL~h~lee~~~LQ~EAe 83 (92)
|+|...-++++......|..|+..|.
T Consensus 109 C~~~~~~~~~v~~ik~~f~kL~~~~g 134 (159)
T 1n1f_A 109 CHCRQEATNATRVIHDNYDQLEVHAA 134 (159)
T ss_dssp CCCCHHHHHHHHHHHHHHHHSCHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhcccchhh
Confidence 77888888888888888888887743
No 23
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A*
Probab=24.39 E-value=2.1e+02 Score=21.95 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHhchh--hHHHHHHHHHHHHHHHhhHHHHhHhh
Q psy12362 35 GREAVESFLNHCVRPFAGLIQMCGHNR--ARQRDRLSHLLEEFAALQDEKSKIRA 87 (92)
Q Consensus 35 ~~~~~d~F~~~~~~pf~~l~~~~g~NR--aRQRdkL~h~lee~~~LQ~EAe~vD~ 87 (92)
..+.=-.|++..+.|+...+.-+.--. .-.-+.+...++.|..+.+|..+.++
T Consensus 280 ~~k~QigFi~~vv~Pl~~~l~~~~~~p~~~~~l~~l~~N~~~W~~~~~~~~~~~~ 334 (353)
T 1zkl_A 280 IANIQIGFMTYLVEPLFTEWARFSNTRLSQTMLGHVGLNKASWKGLQREQSSSED 334 (353)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 444445899999999998887765211 12356777788889888877766554
No 24
>3clj_A Protein NRD1; CTD-interacting domain, nucleus, phosphoprotein, RNA polymer binding protein, RNA binding protein; 2.10A {Saccharomyces cerevisiae}
Probab=23.52 E-value=1.9e+02 Score=20.13 Aligned_cols=45 Identities=16% Similarity=0.335 Sum_probs=28.8
Q ss_pred CHHHHHHHHHH-------------HHHhhHhHHHHHHHHhch-----hhHHHHHHHHHHHHHH
Q psy12362 32 TAQGREAVESF-------------LNHCVRPFAGLIQMCGHN-----RARQRDRLSHLLEEFA 76 (92)
Q Consensus 32 d~q~~~~~d~F-------------~~~~~~pf~~l~~~~g~N-----RaRQRdkL~h~lee~~ 76 (92)
|.-+|+..+.| +...++-|..++..+..| -.=||+|+..+|.-|.
T Consensus 66 DSIvR~~~~~~~k~g~~~~a~~gt~a~~v~~~~e~i~~l~~~~~~~~~~~~k~Ki~klldiW~ 128 (157)
T 3clj_A 66 DSIGRAYLDETRSNSNSSSNKPGTCAHAINTLGEVIQELLSDAIAKSNQDHKEKIRMLLDIWD 128 (157)
T ss_dssp HHHHHHHHHHHHTCCC----STTSHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCccCCCCccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc
Confidence 66777777655 222233355555555433 3469999999999997
No 25
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=23.34 E-value=69 Score=17.84 Aligned_cols=25 Identities=12% Similarity=0.364 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhc
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGN 89 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l 89 (92)
-||...+|.+-.+|++|-+++-.-+
T Consensus 7 E~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 7 KAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4788899999999999999887654
No 26
>1tu9_A Hypothetical protein PA3967; structural genomics, heme, hemoglobin, pseudomonas aeruginos PSI, protein structure initiative; HET: HEM; 1.20A {Pseudomonas aeruginosa} SCOP: a.1.1.2
Probab=23.16 E-value=55 Score=20.71 Aligned_cols=18 Identities=11% Similarity=0.110 Sum_probs=13.0
Q ss_pred hhhHHHHHHHHHHHHHHH
Q psy12362 60 NRARQRDRLSHLLEEFAA 77 (92)
Q Consensus 60 NRaRQRdkL~h~lee~~~ 77 (92)
|..+|+.++...|..+..
T Consensus 45 d~~~q~~~l~~~l~~~v~ 62 (134)
T 1tu9_A 45 DMTAQKHLLRAGIMNLVM 62 (134)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHH
Confidence 567788888877776654
No 27
>1jk0_A RNR Y2, ribonucleoside-diphosphate reductase small chain 1; ribonucleotide reductase, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: a.25.1.2 PDB: 1smq_A
Probab=22.72 E-value=2.9e+02 Score=21.89 Aligned_cols=61 Identities=7% Similarity=-0.016 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHH-H--HHhhHhHHHHHHHHhchhhHHHHHHHHHHHHHHHhhHHHHhHhhhc
Q psy12362 28 RAGFTAQGREAVESF-L--NHCVRPFAGLIQMCGHNRARQRDRLSHLLEEFAALQDEKSKIRAGN 89 (92)
Q Consensus 28 ~l~~d~q~~~~~d~F-~--~~~~~pf~~l~~~~g~NRaRQRdkL~h~lee~~~LQ~EAe~vD~~l 89 (92)
+...+|+++-++-.+ + +..++.|..++.++|.+.. .|+.+=..+++...||..|+-+-..+
T Consensus 178 ~~v~~pE~~~~~~~Q~~~EaIHsesYS~il~tl~~d~~-e~~~iF~~i~~~p~L~~Ka~~i~~~~ 241 (419)
T 1jk0_A 178 TEVQIPEAKSFYGFQIMIENIHSETYSLLIDTYIKDPK-ESEFLFNAIHTIPEIGEKAEWALRWI 241 (419)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH-HHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 334688887544333 2 3345899999999998844 78888888899999999998876443
No 28
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=22.07 E-value=1.7e+02 Score=21.12 Aligned_cols=45 Identities=16% Similarity=0.284 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHhhHhHHHHHHHHhchhhHHHHHHHHHHHHHHHhhHHHHhHhhhcc
Q psy12362 35 GREAVESFLNHCVRPFAGLIQMCGHNRARQRDRLSHLLEEFAALQDEKSKIRAGNS 90 (92)
Q Consensus 35 ~~~~~d~F~~~~~~pf~~l~~~~g~NRaRQRdkL~h~lee~~~LQ~EAe~vD~~l~ 90 (92)
.++.+-..+.+|+.... +.+++..|+-.+.+.||.|++++=+++.
T Consensus 139 p~e~i~elid~~ld~~~-----------~L~~~n~~LqkeNeRL~~E~n~~l~qlE 183 (184)
T 3w03_C 139 PAEVIRELICYCLDTIA-----------ENQAKNEHLQKENERLLRDWNDVQGRFE 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34555555666666554 4578899999999999999999877763
No 29
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=21.76 E-value=69 Score=20.35 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHhhH-hHHHHHHHHhchhhHHHHHHHHHHHH
Q psy12362 32 TAQGREAVESFLNHCVR-PFAGLIQMCGHNRARQRDRLSHLLEE 74 (92)
Q Consensus 32 d~q~~~~~d~F~~~~~~-pf~~l~~~~g~NRaRQRdkL~h~lee 74 (92)
.+.++..+|.|..++.. |- +-..|..+..++++|+..-+..
T Consensus 13 ~~~i~~lv~~FY~~v~~Dp~--l~~~F~~d~~~~~~~l~~Fl~~ 54 (128)
T 2bkm_A 13 EETVAKLVEAFYRRVAAHPD--LRPIFPDDLTETAHKQKQFLTQ 54 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCTT--TGGGSCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCHH--HHHHCccCHHHHHHHHHHHHHH
Confidence 34555666666655542 21 1111224555555555554443
No 30
>2xyk_A 2-ON-2 hemoglobin; oxygen storage-transport complex; HET: HEM; 2.10A {Agrobacterium tumefaciens}
Probab=21.63 E-value=1.7e+02 Score=18.90 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHhhH-h-HHHHHHHHhchhhHHHHHHHHHHHHH
Q psy12362 32 TAQGREAVESFLNHCVR-P-FAGLIQMCGHNRARQRDRLSHLLEEF 75 (92)
Q Consensus 32 d~q~~~~~d~F~~~~~~-p-f~~l~~~~g~NRaRQRdkL~h~lee~ 75 (92)
.+.++.++|.|..++.. | +..+-.+|..+..+.++|+..-+..|
T Consensus 15 ~~~i~~lV~~FY~~v~~Dp~~~~l~~~F~~d~~~~~~~l~~Fl~~~ 60 (133)
T 2xyk_A 15 DATVRALTRRFYELMDTLPEAARCRAIHPADLSGSEAKFYDYLTGY 60 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCGGGHHHHHHSCSSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccccHHHHhccCCHHHHHHHHHHHHHHH
Confidence 45789999999988773 4 12233345577888888888776654
No 31
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.48 E-value=80 Score=17.59 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHhhHHHHhHhhhc
Q psy12362 65 RDRLSHLLEEFAALQDEKSKIRAGN 89 (92)
Q Consensus 65 RdkL~h~lee~~~LQ~EAe~vD~~l 89 (92)
-||...+|.+-.+|++|-+++...+
T Consensus 7 E~kVEeLl~~~~~Le~EV~RL~~ll 31 (36)
T 1kd8_A 7 EAEVEEIESEVWHLENEVARLEKEN 31 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 3788889999999999999987655
No 32
>1ux8_A YJBI protein; oxygen storage/transport, truncated hemoglobin, oxygen transport; HET: HEM; 2.15A {Bacillus subtilis} SCOP: a.1.1.1
Probab=21.30 E-value=66 Score=20.74 Aligned_cols=41 Identities=12% Similarity=0.302 Sum_probs=23.7
Q ss_pred CHHHHHHHHHHHHHhhH-hHHHHHHHHhchhhHHHHHHHHHHHHH
Q psy12362 32 TAQGREAVESFLNHCVR-PFAGLIQMCGHNRARQRDRLSHLLEEF 75 (92)
Q Consensus 32 d~q~~~~~d~F~~~~~~-pf~~l~~~~g~NRaRQRdkL~h~lee~ 75 (92)
.+ ++.++|.|..++.. |- +-..|..+..++++|+..-+..|
T Consensus 15 ~~-i~~lv~~FY~~v~~Dp~--l~~~F~~d~~~~~~~l~~Fl~~~ 56 (132)
T 1ux8_A 15 EL-LSQLVDTFYERVASHPL--LKPIFPSDLTETARKQKQFLTQY 56 (132)
T ss_dssp HH-HHHHHHHHHHHHHHCTT--TGGGSCSCCHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHHHHHHHHcChH--HHHHCccCHHHHHHHHHHHHHHH
Confidence 45 77777777777653 21 11223356777777776666543
No 33
>1a6m_A Myoglobin; heme protein, model compounds, oxygen storage, ligand binding geometry, conformational substates, oxygen transpor; HET: HEM; 1.00A {Physeter catodon} SCOP: a.1.1.2 PDB: 1a6k_A* 1a6n_A* 2jho_A* 1ufp_A* 2eb9_A* 2eb8_A* 2w6w_A* 2ekt_A* 105m_A* 104m_A* 1ajh_A* 1ajg_A* 1bvc_A* 1bvd_A* 1bz6_A* 1bzr_A* 1cq2_A* 1duk_A* 1ebc_A* 1hjt_A* ...
Probab=21.08 E-value=1.4e+02 Score=19.32 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=24.4
Q ss_pred CHHHHHHHHHHHHHhhHhHHHHHHHHh
Q psy12362 32 TAQGREAVESFLNHCVRPFAGLIQMCG 58 (92)
Q Consensus 32 d~q~~~~~d~F~~~~~~pf~~l~~~~g 58 (92)
+|.+++.|+.|+...+..+..-|+-.|
T Consensus 124 t~e~~~AW~k~~~~v~~~l~~~y~e~~ 150 (151)
T 1a6m_A 124 GADAQGAMNKALELFRKDIAAKYKELG 150 (151)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 899999999999999999998887665
No 34
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=21.05 E-value=1.3e+02 Score=18.56 Aligned_cols=12 Identities=8% Similarity=0.174 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy12362 34 QGREAVESFLNH 45 (92)
Q Consensus 34 q~~~~~d~F~~~ 45 (92)
.+++.+|.|..+
T Consensus 11 ~i~~lv~~FY~~ 22 (116)
T 1dlw_A 11 AVQAVTAQFYAN 22 (116)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
Done!