Query psy12362
Match_columns 92
No_of_seqs 41 out of 43
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 17:08:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy12362.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/12362hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1idra_ a.1.1.1 (A:) Protozoan 43.4 7.2 0.00052 23.7 2.4 45 29-75 18-64 (127)
2 d2gupa2 c.55.1.10 (A:115-289) 40.5 20 0.0015 21.8 4.3 30 31-60 83-112 (175)
3 d1qnta2 c.55.7.1 (A:6-91) O6-a 36.1 7.4 0.00054 24.0 1.5 27 7-35 58-84 (86)
4 d1z6ra3 c.55.1.10 (A:211-406) 29.8 37 0.0027 20.9 4.3 29 31-59 97-125 (196)
5 d2ap1a1 c.55.1.10 (A:118-303) 29.6 38 0.0028 20.3 4.3 28 31-58 101-128 (186)
6 d2hoea2 c.55.1.10 (A:200-368) 27.8 43 0.0031 20.1 4.3 28 31-58 76-103 (169)
7 d1dlwa_ a.1.1.1 (A:) Protozoan 26.6 41 0.003 19.4 3.9 15 33-47 39-53 (116)
8 d2aa4a2 c.55.1.10 (A:120-289) 25.5 50 0.0036 19.8 4.3 29 31-59 87-115 (170)
9 d1z05a2 c.55.1.10 (A:209-405) 25.3 49 0.0036 20.3 4.3 28 31-58 98-125 (197)
10 d1dlya_ a.1.1.1 (A:) Protozoan 25.1 34 0.0025 19.6 3.3 8 15-22 25-32 (121)
11 d1gm5a1 a.24.21.1 (A:7-105) Re 24.1 34 0.0024 21.3 3.2 40 27-73 45-84 (99)
12 d2akja4 d.134.1.1 (A:175-345) 21.3 43 0.0031 21.3 3.4 41 48-89 116-156 (171)
13 d2j7ya1 a.123.1.1 (A:217-452) 20.3 1E+02 0.0074 19.6 8.5 53 34-86 160-212 (236)
No 1
>d1idra_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Mycobacterium tuberculosis, HbN [TaxId: 1773]}
Probab=43.39 E-value=7.2 Score=23.68 Aligned_cols=45 Identities=16% Similarity=0.240 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHhh-Hh-HHHHHHHHhchhhHHHHHHHHHHHHH
Q psy12362 29 AGFTAQGREAVESFLNHCV-RP-FAGLIQMCGHNRARQRDRLSHLLEEF 75 (92)
Q Consensus 29 l~~d~q~~~~~d~F~~~~~-~p-f~~l~~~~g~NRaRQRdkL~h~lee~ 75 (92)
+...+-+++.+|.|.+++. .| +..++ -+.+..++|+++...+..+
T Consensus 18 lGG~~~I~~lv~~FY~~i~~d~~l~~~F--~~~d~~~~~~~~~~fl~~~ 64 (127)
T d1idra_ 18 IGGHEAIEVVVEDFYVRVLADDQLSAFF--SGTNMSRLKGKQVEFFAAA 64 (127)
T ss_dssp TTHHHHHHHHHHHHHHHHHHCTTTGGGG--TTCCHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHHHcChHHHHhc--CCCCHHHHHHHHHHHHHHH
Confidence 3446778888888888865 22 11112 2677888888887666544
No 2
>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=40.49 E-value=20 Score=21.81 Aligned_cols=30 Identities=10% Similarity=0.058 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHhch
Q psy12362 31 FTAQGREAVESFLNHCVRPFAGLIQMCGHN 60 (92)
Q Consensus 31 ~d~q~~~~~d~F~~~~~~pf~~l~~~~g~N 60 (92)
.||.+.+.++.+..+..+...+++.++...
T Consensus 83 gd~~a~~~~~~~~~~la~~i~~~i~~ldp~ 112 (175)
T d2gupa2 83 GNILCQEAIERMNRNLAQGLLNIQYLIDPG 112 (175)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHCCS
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 489999999999999999999999998665
No 3
>d1qnta2 c.55.7.1 (A:6-91) O6-alkylguanine-DNA alkyltransferase {Human (Homo sapiens) [TaxId: 9606]}
Probab=36.14 E-value=7.4 Score=23.98 Aligned_cols=27 Identities=11% Similarity=0.182 Sum_probs=21.8
Q ss_pred hHHHHhhcCCcccCcCCCCCCCCCCCHHH
Q psy12362 7 ASMVRSFIAPPFLHSLYWPSPRAGFTAQG 35 (92)
Q Consensus 7 ~~svk~F~~pP~L~~~vlp~s~l~~d~q~ 35 (92)
.+|++.+|..|...+. ||.+++. +|-.
T Consensus 58 ~~WL~aYF~~p~~~~~-LPlPalH-hp~~ 84 (86)
T d1qnta2 58 TAWLNAYFHQPEAIEE-FPVPALH-HPVF 84 (86)
T ss_dssp HHHHHHHHHCGGGGGG-SCCCCBC-CHHH
T ss_pred HHHHHHHccChhhccC-CCCCccc-chhh
Confidence 4789999999999987 7888886 6644
No 4
>d1z6ra3 c.55.1.10 (A:211-406) Mlc protein {Escherichia coli [TaxId: 562]}
Probab=29.84 E-value=37 Score=20.89 Aligned_cols=29 Identities=10% Similarity=0.100 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHhc
Q psy12362 31 FTAQGREAVESFLNHCVRPFAGLIQMCGH 59 (92)
Q Consensus 31 ~d~q~~~~~d~F~~~~~~pf~~l~~~~g~ 59 (92)
.|+++++.+|.|..+......+++.++.-
T Consensus 97 gd~~a~~i~~~~~~~la~~i~~l~~~ldP 125 (196)
T d1z6ra3 97 GDLLAKDIITGVGAHVGRILAIMVNLFNP 125 (196)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 48899999999999999999999998753
No 5
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}
Probab=29.58 E-value=38 Score=20.34 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHh
Q psy12362 31 FTAQGREAVESFLNHCVRPFAGLIQMCG 58 (92)
Q Consensus 31 ~d~q~~~~~d~F~~~~~~pf~~l~~~~g 58 (92)
.|+.+++.++.+..+..+...+++.++.
T Consensus 101 gd~~a~~i~~~~~~~la~~i~nl~~~ld 128 (186)
T d2ap1a1 101 GDEQAHAHVERYLDLLAVCLGNILTIVD 128 (186)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4889999999999999999999998863
No 6
>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}
Probab=27.79 E-value=43 Score=20.07 Aligned_cols=28 Identities=14% Similarity=0.140 Sum_probs=25.5
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHh
Q psy12362 31 FTAQGREAVESFLNHCVRPFAGLIQMCG 58 (92)
Q Consensus 31 ~d~q~~~~~d~F~~~~~~pf~~l~~~~g 58 (92)
.|+.+++.++.+..+......+++.++.
T Consensus 76 gd~~a~~~~~~~~~~la~~l~n~~~~~d 103 (169)
T d2hoea2 76 GDVRVKEYFDDIARYFSIGLLNLIHLFG 103 (169)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4899999999999999999999998874
No 7
>d1dlwa_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Ciliate (Paramecium caudatum) [TaxId: 5885]}
Probab=26.64 E-value=41 Score=19.40 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhh
Q psy12362 33 AQGREAVESFLNHCV 47 (92)
Q Consensus 33 ~q~~~~~d~F~~~~~ 47 (92)
++.++++-.|+..+.
T Consensus 39 ~~~~~~~~~fl~~~~ 53 (116)
T d1dlwa_ 39 PNQTNKTAAFLCAAL 53 (116)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHc
Confidence 344444445544443
No 8
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}
Probab=25.51 E-value=50 Score=19.76 Aligned_cols=29 Identities=10% Similarity=0.025 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHhc
Q psy12362 31 FTAQGREAVESFLNHCVRPFAGLIQMCGH 59 (92)
Q Consensus 31 ~d~q~~~~~d~F~~~~~~pf~~l~~~~g~ 59 (92)
.|+.+++.++.+..+..+...+++.++--
T Consensus 87 gd~~a~~i~~~~~~~la~~l~~l~~~ldP 115 (170)
T d2aa4a2 87 GDEQAQQLIHRSARTLARLIADIKATTDC 115 (170)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCchhHHHHHHHHHHHHHHHHhhhheECC
Confidence 37899999999999999999999888743
No 9
>d1z05a2 c.55.1.10 (A:209-405) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}
Probab=25.28 E-value=49 Score=20.32 Aligned_cols=28 Identities=7% Similarity=-0.019 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHHHHHhhHhHHHHHHHHh
Q psy12362 31 FTAQGREAVESFLNHCVRPFAGLIQMCG 58 (92)
Q Consensus 31 ~d~q~~~~~d~F~~~~~~pf~~l~~~~g 58 (92)
.|+.+++.+|.+..+..+...+++.++.
T Consensus 98 gd~~a~~~~~~~~~~la~~i~nl~~~ld 125 (197)
T d1z05a2 98 GDPLAVDVIQQLGRYLGAAIAIVINLFN 125 (197)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHHHHHHhHHHhcC
Confidence 3789999999999999999999998875
No 10
>d1dlya_ a.1.1.1 (A:) Protozoan/bacterial hemoglobin {Green alga (Chlamydomonas eugametos) [TaxId: 3054]}
Probab=25.15 E-value=34 Score=19.64 Aligned_cols=8 Identities=25% Similarity=0.426 Sum_probs=3.8
Q ss_pred CCcccCcC
Q psy12362 15 APPFLHSL 22 (92)
Q Consensus 15 ~pP~L~~~ 22 (92)
++|.|.+.
T Consensus 25 ~d~~l~~~ 32 (121)
T d1dlya_ 25 ADPTVSTY 32 (121)
T ss_dssp TCTTTGGG
T ss_pred cCHHHHHh
Confidence 34455544
No 11
>d1gm5a1 a.24.21.1 (A:7-105) RecG, N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=24.14 E-value=34 Score=21.35 Aligned_cols=40 Identities=23% Similarity=0.222 Sum_probs=32.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhhHhHHHHHHHHhchhhHHHHHHHHHHH
Q psy12362 27 PRAGFTAQGREAVESFLNHCVRPFAGLIQMCGHNRARQRDRLSHLLE 73 (92)
Q Consensus 27 s~l~~d~q~~~~~d~F~~~~~~pf~~l~~~~g~NRaRQRdkL~h~le 73 (92)
-||+.|+.+.+.+-.|+.|.+ .+--++..|+|-++....+
T Consensus 45 DpLlen~el~~kLqeF~~Yi~-------~~~~Lp~eR~~kRvk~~~g 84 (99)
T d1gm5a1 45 DPLLENKDLEEKLQAFLDYVK-------EIPNLPEARKRYRIQKSLE 84 (99)
T ss_dssp CGGGGCHHHHHHHHHHHHHHT-------TSSSSCHHHHHHHHHHHHH
T ss_pred cHhhcCHHHHHHHHHHHHHHH-------HhccCCHHHHHHHHhccHH
Confidence 578889999999999999865 3456788999988877654
No 12
>d2akja4 d.134.1.1 (A:175-345) Ferredoxin--nitrite reductase, NIR {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=21.35 E-value=43 Score=21.28 Aligned_cols=41 Identities=15% Similarity=0.276 Sum_probs=26.4
Q ss_pred HhHHHHHHHHhchhhHHHHHHHHHHHHHHHhhHHHHhHhhhc
Q psy12362 48 RPFAGLIQMCGHNRARQRDRLSHLLEEFAALQDEKSKIRAGN 89 (92)
Q Consensus 48 ~pf~~l~~~~g~NRaRQRdkL~h~lee~~~LQ~EAe~vD~~l 89 (92)
...+.+|+.+|.---|.+.++.++|++|.. ..=.+.|.+++
T Consensus 116 ~av~~~y~~~g~r~~r~~aR~~~li~~~G~-e~f~~~v~~~l 156 (171)
T d2akja4 116 KAMLEAFRDLGFRGNRQKCRMMWLIDELGM-EAFRGEVEKRM 156 (171)
T ss_dssp HHHHHHHHHHCCCSSGGGCSHHHHHHHHCH-HHHHHHHHTTS
T ss_pred HHHHHHHHHhcccchhhhhHHHHHHHHcCH-HHHHHHHHHHh
Confidence 445668888887666777778888888872 22233354444
No 13
>d2j7ya1 a.123.1.1 (A:217-452) Estrogen receptor beta {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.31 E-value=1e+02 Score=19.57 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhHhHHHHHHHHhchhhHHHHHHHHHHHHHHHhhHHHHhHh
Q psy12362 34 QGREAVESFLNHCVRPFAGLIQMCGHNRARQRDRLSHLLEEFAALQDEKSKIR 86 (92)
Q Consensus 34 q~~~~~d~F~~~~~~pf~~l~~~~g~NRaRQRdkL~h~lee~~~LQ~EAe~vD 86 (92)
..++.+....++........++.+|.|..-+..+++++|.=+..|..=+.+.-
T Consensus 160 ~~~~~v~~~~~~~~~~l~~~~~~~~~~~p~~~~Rf~~LL~~Lp~Lr~l~~~~~ 212 (236)
T d2j7ya1 160 ESSRKLTHLLNAVTDALVWVIAKSGISSQQQSVRLANLLMLLSHVRHISNKGM 212 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777777777778889999999988876654433
Done!